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Yui T, Uto T, Noda K. Extended Ensemble Molecular Dynamics Study of Ammonia-Cellulose I Complex Crystal Models: Free-Energy Landscape and Atomistic Pictures of Ammonia Diffusion in the Crystalline Phase. J Chem Inf Model 2023. [PMID: 37366678 DOI: 10.1021/acs.jcim.3c00106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
Abstract
Here, we report extended ensemble molecular dynamics simulations of ammonia-cellulose I complex crystal models to evaluate the diffusion behavior of the guest ammonia molecules and the potential of mean force (PMF), namely, the free energy change along the chosen reaction coordinate, for migration of an ammonia molecule in the crystal models. Accelerated molecular dynamics simulations confirmed that ammonia molecules almost exclusively diffused through the hydrophilic channel even when the crystal framework was retained. Adaptive steered molecular dynamics simulations detected distinct PMF peaks with heights of approximately 7 kcal/mol as the ammonia molecule passed through the cellulose-chain layers. Introducing hybrid quantum mechanical and molecular mechanics theory to the adaptive steered molecular dynamics simulation effectively lowered the heights of the PMF peaks to approximately 5 kcal/mol, accompanied by a slight decrease in the baseline. Removal of the ammonia molecules in the neighboring channels resulted in a continuous increase in the baseline for the migration of an ammonia molecule in the hydrophilic channel. When the halves of the crystal model were separated to widen the hydrophilic channel to 0.2 nm, the PMF profiles exhibited an unexpected increase. This resulted from water structuring in the expanded hydrophilic channel, which disappeared with further expansion of the hydrophilic channel to 0.3 nm.
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Affiliation(s)
- Toshifumi Yui
- Department of Applied Chemistry, Faculty of Engineering, University of Miyazaki, Nishi 1-1, Gakuen Kibanadai, Miyazaki 889-2192, Japan
| | - Takuya Uto
- Department of Applied Chemistry, Faculty of Engineering, University of Miyazaki, Nishi 1-1, Gakuen Kibanadai, Miyazaki 889-2192, Japan
- Department of Engineering, Graduate School of Engineering, University of Miyazaki, Nishi 1-1, Gakuen Kibanadai, Miyazaki 889-2192, Japan
| | - Kotaro Noda
- Design Engineering Section, Ceramic Packages Division 1, KYOCERA Corporation, Kokubu Yamashita-cho 1-1, Kirishima, Kagoshima 899-4396, Japan
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Cellulolytic and Xylanolytic Enzymes from Yeasts: Properties and Industrial Applications. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27123783. [PMID: 35744909 PMCID: PMC9229053 DOI: 10.3390/molecules27123783] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/08/2022] [Accepted: 06/09/2022] [Indexed: 11/17/2022]
Abstract
Lignocellulose, the main component of plant cell walls, comprises polyaromatic lignin and fermentable materials, cellulose and hemicellulose. It is a plentiful and renewable feedstock for chemicals and energy. It can serve as a raw material for the production of various value-added products, including cellulase and xylanase. Cellulase is essentially required in lignocellulose-based biorefineries and is applied in many commercial processes. Likewise, xylanases are industrially important enzymes applied in papermaking and in the manufacture of prebiotics and pharmaceuticals. Owing to the widespread application of these enzymes, many prokaryotes and eukaryotes have been exploited to produce cellulase and xylanases in good yields, yet yeasts have rarely been explored for their plant-cell-wall-degrading activities. This review is focused on summarizing reports about cellulolytic and xylanolytic yeasts, their properties, and their biotechnological applications.
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Bhardwaj N, Kumar B, Agrawal K, Verma P. Current perspective on production and applications of microbial cellulases: a review. BIORESOUR BIOPROCESS 2021; 8:95. [PMID: 38650192 PMCID: PMC10992179 DOI: 10.1186/s40643-021-00447-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Accepted: 09/21/2021] [Indexed: 12/27/2022] Open
Abstract
The potential of cellulolytic enzymes has been widely studied and explored for bioconversion processes and plays a key role in various industrial applications. Cellulase, a key enzyme for cellulose-rich waste feedstock-based biorefinery, has increasing demand in various industries, e.g., paper and pulp, juice clarification, etc. Also, there has been constant progress in developing new strategies to enhance its production, such as the application of waste feedstock as the substrate for the production of individual or enzyme cocktails, process parameters control, and genetic manipulations for enzyme production with enhanced yield, efficiency, and specificity. Further, an insight into immobilization techniques has also been presented for improved reusability of cellulase, a critical factor that controls the cost of the enzyme at an industrial scale. In addition, the review also gives an insight into the status of the significant application of cellulase in the industrial sector, with its techno-economic analysis for future applications. The present review gives a complete overview of current perspectives on the production of microbial cellulases as a promising tool to develop a sustainable and greener concept for industrial applications.
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Affiliation(s)
- Nisha Bhardwaj
- Bioprocess and Bioenergy Laboratory, Department of Microbiology, Central University of Rajasthan, NH-8, Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305817, India
- Department of Chemical Engineering, Institute of Chemical Technology, Nathalal Parekh Marg, Matunga, Mumbai, Maharashtra, 400019, India
| | - Bikash Kumar
- Bioprocess and Bioenergy Laboratory, Department of Microbiology, Central University of Rajasthan, NH-8, Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305817, India
| | - Komal Agrawal
- Bioprocess and Bioenergy Laboratory, Department of Microbiology, Central University of Rajasthan, NH-8, Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305817, India
| | - Pradeep Verma
- Bioprocess and Bioenergy Laboratory, Department of Microbiology, Central University of Rajasthan, NH-8, Bandarsindri, Kishangarh, Ajmer, Rajasthan, 305817, India.
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Lee DS, Lee YG, Cho EJ, Song Y, Bae HJ. Hydrolysis pattern analysis of xylem tissues of woody plants pretreated with hydrogen peroxide and acetic acid: rapid saccharification of softwood for economical bioconversion. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:37. [PMID: 33549141 PMCID: PMC7866737 DOI: 10.1186/s13068-021-01889-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Accepted: 01/25/2021] [Indexed: 05/20/2023]
Abstract
BACKGROUND Woody plants with high glucose content are alternative bioresources for the production of biofuels and biochemicals. Various pretreatment methods may be used to reduce the effects of retardation factors such as lignin interference and cellulose structural recalcitrance on the degradation of the lignocellulose material of woody plants. RESULTS A hydrogen peroxide-acetic acid (HPAC) pretreatment was used to reduce the lignin content of several types of woody plants, and the effect of the cellulose structural recalcitrance on the enzymatic hydrolysis was analyzed. The cellulose structural recalcitrance and the degradation patterns of the wood fibers in the xylem tissues of Quercus acutissima (hardwood) resulted in greater retardation in the enzymatic saccharification than those in the tracheids of Pinus densiflora (softwood). In addition to the HPAC pretreatment, the application of supplementary enzymes (7.5 FPU cellulase for 24 h) further increased the hydrolysis rate of P. densiflora from 61.42 to 91.94% whereas the same effect was not observed for Q. acutissima. It was also observed that endoxylanase synergism significantly affected the hydrolysis of P. densiflora. However, this synergistic effect was lower for other supplementary enzymes. The maximum concentration of the reducing sugars produced from 10% softwood was 89.17 g L-1 after 36 h of hydrolysis with 15 FPU cellulase and other supplementary enzymes. Approximately 80 mg mL-1 of reducing sugars was produced with the addition of 7.5 FPU cellulase and other supplementary enzymes after 36 h, achieving rapid saccharification. CONCLUSION HPAC pretreatment removed the interference of lignin, reduced structural recalcitrance of cellulose in the P. densiflora, and enabled rapid saccharification of the woody plants including a high concentration of insoluble substrates with only low amounts of cellulase. HPAC pretreatment may be a viable alternative for the cost-efficient production of biofuels or biochemicals from softwood plant tissues.
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Affiliation(s)
- Dae-Seok Lee
- Bio-Energy Research Center, Chonnam National University, Gwangju, 500-757, Republic of Korea
| | - Yoon-Gyo Lee
- Bio-Energy Research Center, Chonnam National University, Gwangju, 500-757, Republic of Korea
| | - Eun Jin Cho
- Bio-Energy Research Center, Chonnam National University, Gwangju, 500-757, Republic of Korea
| | - Younho Song
- Bio-Energy Research Center, Chonnam National University, Gwangju, 500-757, Republic of Korea
| | - Hyeun-Jong Bae
- Bio-Energy Research Center, Chonnam National University, Gwangju, 500-757, Republic of Korea.
- Department of Bioenergy Science and Technology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju, 500-757, Republic of Korea.
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Nemmaru B, Ramirez N, Farino CJ, Yarbrough JM, Kravchenko N, Chundawat SPS. Reduced type-A carbohydrate-binding module interactions to cellulose I leads to improved endocellulase activity. Biotechnol Bioeng 2020; 118:1141-1151. [PMID: 33245142 DOI: 10.1002/bit.27637] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 11/12/2020] [Accepted: 11/15/2020] [Indexed: 12/24/2022]
Abstract
Dissociation of nonproductively bound cellulolytic enzymes from cellulose is hypothesized to be a key rate-limiting factor impeding cost-effective biomass conversion to fermentable sugars. However, the role of carbohydrate-binding modules (CBMs) in enabling nonproductive enzyme binding is not well understood. Here, we examine the subtle interplay of CBM binding and cellulose hydrolysis activity for three models type-A CBMs (Families 1, 3a, and 64) tethered to multifunctional endoglucanase (CelE) on two distinct cellulose allomorphs (i.e., cellulose I and III). We generated a small library of mutant CBMs with varying cellulose affinity, as determined by equilibrium binding assays, followed by monitoring cellulose hydrolysis activity of CelE-CBM fusion constructs. Finally, kinetic binding assays using quartz crystal microbalance with dissipation were employed to measure CBM adsorption and desorption rate constants k on and k off , respectively, towards nanocrystalline cellulose derived from both allomorphs. Overall, our results indicate that reduced CBM equilibrium binding affinity towards cellulose I alone, resulting from increased desorption rates ( k off ) and reduced effective adsorption rates ( nk on ), is correlated to overall improved endocellulase activity. Future studies could employ similar approaches to unravel the role of CBMs in nonproductive enzyme binding and develop improved cellulolytic enzymes for industrial applications.
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Affiliation(s)
| | - Nicholas Ramirez
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA
| | - Cindy J Farino
- Department of Biomedical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA
| | - John M Yarbrough
- Biosciences Center, National Renewable Energy Laboratory, Golden, Colorado, USA
| | - Nicholas Kravchenko
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA
| | - Shishir P S Chundawat
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey, USA
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Crystalline stability of cellulose III nanocrystals in the hydrothermal treatment and NaOH solution. Carbohydr Polym 2020; 249:116827. [PMID: 32933674 DOI: 10.1016/j.carbpol.2020.116827] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2020] [Revised: 07/22/2020] [Accepted: 07/22/2020] [Indexed: 01/12/2023]
Abstract
To better understand the system and conversion of cellulose allomorphs, cellulose III nanocrystals (CNC-III) were used to investigate the crystalline stability of cellulose III in the hydrothermal condition and a lower concentrated NaOH-water system. It was shown that H2O or alkali played an important role in the process of polymorphic transformation. The CNC-III allomorph turned back to cellulose I with an extremely low crystallinity (∼4.18 %) during hydrothermal process at 90-95 °C, or cellulose II when the temperature excessed boiling point (≥100 °C). Furthermore, CNC-III could be rapidly dissolved in an aqueous NaOH (∼7 wt.%) without a pre-cooled treatment to obtain its stable solution. Afterwards, cellulose II with a steady average crystallite size (∼34) was acquired after the regeneration process via dialysis with distilled water. The polymorphic transformation was also analyzed by X-ray diffraction (XRD), solid-state 13C nuclear magnetic resonance (13C NMR).
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Fauziyah M, Widiyastuti W, Setyawan H. Nitrogen-Doped Carbon Aerogels Prepared by Direct Pyrolysis of Cellulose Aerogels Derived from Coir Fibers Using an Ammonia–Urea System and Their Electrocatalytic Performance toward the Oxygen Reduction Reaction. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.0c03771] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Mar’atul Fauziyah
- Department of Chemical Engineering, Faculty of Industrial Technology, Sepuluh Nopember Institute of Technology, Kampus ITS Sukolilo, Surabaya 60111, Indonesia
| | - Widiyastuti Widiyastuti
- Department of Chemical Engineering, Faculty of Industrial Technology, Sepuluh Nopember Institute of Technology, Kampus ITS Sukolilo, Surabaya 60111, Indonesia
| | - Heru Setyawan
- Department of Chemical Engineering, Faculty of Industrial Technology, Sepuluh Nopember Institute of Technology, Kampus ITS Sukolilo, Surabaya 60111, Indonesia
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Yadav C, Saini A, Zhang W, You X, Chauhan I, Mohanty P, Li X. Plant-based nanocellulose: A review of routine and recent preparation methods with current progress in its applications as rheology modifier and 3D bioprinting. Int J Biol Macromol 2020; 166:1586-1616. [PMID: 33186649 DOI: 10.1016/j.ijbiomac.2020.11.038] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 10/20/2020] [Accepted: 11/06/2020] [Indexed: 02/07/2023]
Abstract
"Nanocellulose" have captivated the topical sphere of sturdily escalating market for sustainable materials. The review focuses on the comprehensive understanding of the distinct surface chemistry and functionalities pertaining to the renovation of macro-cellulose at nanodimensional scale to provide an intuition of their processing-structure-function prospective. The abundant availability, cost effectiveness and diverse properties associated with plant-based resources have great economical perspective for developing sustainable cellulose nanomaterials. Hence, emphasis has been given on nanocellulose types obtained from plant-based sources. An overarching goal is to provide the recent advancement in the preparation routes of nanocellulose. Considering the excellent shear thinning/thixotropic/gel-like behavior, the review provids an assemblage of publications specifically dealing with its application as rheology modifier with emphasis on its use as bioink for 3D bioprinting for various biomedical applications. Altogether, this review has been oriented in a way to collocate a collective data starting from the historical perspective of cellulose discovery to modern cellulosic chemistry and its renovation as nanocellulose with recent technological hype for broad spanning applications.
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Affiliation(s)
- Chandravati Yadav
- Shaanxi Provincial Key Laboratory of Papermaking Technology and Specialty Paper Development, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an, Shaanxi 710021, PR China.
| | - Arun Saini
- Shaanxi Provincial Key Laboratory of Papermaking Technology and Specialty Paper Development, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an, Shaanxi 710021, PR China
| | - Wenbo Zhang
- Shaanxi Collaborative Innovation Center of Industrial Auxiliary Chemistry & Technology, Shaanxi University of Science & Technology, Xi'an, Shaanxi 710021, PR China
| | - Xiangyu You
- Shaanxi Provincial Key Laboratory of Papermaking Technology and Specialty Paper Development, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an, Shaanxi 710021, PR China
| | - Indu Chauhan
- Department of Biotechnology, Dr B. R. Ambedkar National Institute of Technology, Jalandhar 144011, Punjab, India
| | - Paritosh Mohanty
- Functional Materials Laboratory, Department of Chemistry, IIT Roorkee, Roorkee 247667, Uttarakhand, India
| | - Xinping Li
- Shaanxi Provincial Key Laboratory of Papermaking Technology and Specialty Paper Development, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an, Shaanxi 710021, PR China.
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9
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Abstract
Some cellulases exhibit “processivity”: the ability to degrade crystalline cellulose through successive hydrolytic catalytic reactions without the release of the enzyme from the substrate surface. We previously observed the movement of fungal processive cellulases by high-speed atomic force microscopy, and here, we use the same technique to directly observe the processive movement of bacterial cellobiohydrolases settling a long-standing controversy. Although fungal and bacterial processive cellulases have completely different protein folds, they have evolved to acquire processivity through the same strategy of adding subsites to extend the substrate-binding site and forming a tunnel-like active site by increasing the number of loops covering the active site. This represents an example of protein-level convergent evolution to acquire the same functions from different ancestors. Cellulose is the most abundant biomass on Earth, and many microorganisms depend on it as a source of energy. It consists mainly of crystalline and amorphous regions, and natural degradation of the crystalline part is highly dependent on the degree of processivity of the degrading enzymes (i.e., the extent of continuous hydrolysis without detachment from the substrate cellulose). Here, we report high-speed atomic force microscopic (HS-AFM) observations of the movement of four types of cellulases derived from the cellulolytic bacteria Cellulomonas fimi on various insoluble cellulose substrates. The HS-AFM images clearly demonstrated that two of them (CfCel6B and CfCel48A) slide on crystalline cellulose. The direction of processive movement of CfCel6B is from the nonreducing to the reducing end of the substrate, which is opposite that of processive cellulase Cel7A of the fungus Trichoderma reesei (TrCel7A), whose movement was first observed by this technique, while CfCel48A moves in the same direction as TrCel7A. When CfCel6B and TrCel7A were mixed on the same substrate, “traffic accidents” were observed, in which the two cellulases blocked each other’s progress. The processivity of CfCel6B was similar to those of fungal family 7 cellulases but considerably higher than those of fungal family 6 cellulases. The results indicate that bacteria utilize family 6 cellulases as high-processivity enzymes for efficient degradation of crystalline cellulose, whereas family 7 enzymes have the same function in fungi. This is consistent with the idea of convergent evolution of processive cellulases in fungi and bacteria to achieve similar functionality using different protein foldings.
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Wu Q, Xu J, Wu Z, Zhu S, Gao Y, Shi C. The effect of surface modification on chemical and crystalline structure of the cellulose III nanocrystals. Carbohydr Polym 2020; 235:115962. [DOI: 10.1016/j.carbpol.2020.115962] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 02/04/2020] [Accepted: 02/05/2020] [Indexed: 12/13/2022]
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11
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Zhao C, Shao Q, Chundawat SPS. Recent advances on ammonia-based pretreatments of lignocellulosic biomass. BIORESOURCE TECHNOLOGY 2020; 298:122446. [PMID: 31791921 DOI: 10.1016/j.biortech.2019.122446] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Revised: 11/15/2019] [Accepted: 11/16/2019] [Indexed: 05/06/2023]
Abstract
Ammonia-based pretreatments have been extensively studied in the last decade as one of the leading pretreatment technologies for lignocellulose biorefining. Here, we discuss the key features and compare performances of several leading ammonia-based pretreatments (e.g., soaking in aqueous ammonia or SAA, ammonia recycled percolation or ARP, ammonia fiber expansion or AFEX, and extractive ammonia or EA). We provide detailed insight into the distinct physicochemical mechanisms employed during ammonia-based pretreatments and its impact on downstream bioprocesses (e.g., enzymatic saccharification); such as modification of cellulose crystallinity, lignin/hemicellulose structure, and other ultrastructural changes such as cell wall porosity. Lastly, a brief overview of process technoeconomics and environmental impacts are discussed, along with recommendations for future areas of research on ammonia-based pretreatments.
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Affiliation(s)
- Chao Zhao
- National Engineering Research Center for Wood-based Resource Utilization, School of Engineering, Zhejiang A&F University, Linan, Zhejiang 311300, People's Republic of China
| | - Qianjun Shao
- Faculty of Mechanical Engineering & Mechanics, Ningbo University, Ningbo, Zhejiang 315211, People's Republic of China
| | - Shishir P S Chundawat
- Department of Chemical & Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.
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12
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Uto T, Minamizaki M, Yui T. Molecular Dynamics Simulation of Cellulose I-Ethylenediamine Complex Crystal Models. J Phys Chem B 2020; 124:134-143. [PMID: 31794670 DOI: 10.1021/acs.jpcb.9b08153] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cellulose I fibrils swell on exposure to ethylenediamine (EDA), which forms the cellulose I-EDA complex. These are regarded as host materials with guest intercalation. The present study reports molecular dynamics (MD) simulations of cellulose I-EDA crystal models with finite fiber to reproduce desorption of EDA molecules. The force field parameters for EDA were improved. Part of the EDA molecules was desorbed only from the surfaces of the crystal models, not from their interiors. The EDA molecules diffused through a hydrophilic channel composed of the hydrophilic edges of the cellulose chains, and their conformations and orientations changed. With the configuration of the cellulose chains being held, the vacant hydrophilic channel was immediately filled with water molecules. The innermost part of the crystal models, defined as a core unit, was partly deformed from the initial crystal structure, including the changes in the exocyclic group conformations of the cellulose chains and the orientations of the EDA molecules, coupled with partial reconfiguration of the intermolecular hydrogen bonding scheme. A possible crystalline conversion scheme after complete desorption of EDA has been discussed based on the present findings.
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Affiliation(s)
- Takuya Uto
- Organization for Promotion of Tenure Track , University of Miyazaki , Nishi 1-1 Gakuen-Kibanadai , Miyazaki 889-2192 , Japan.,Department of Applied Chemistry, Faculty of Engineering , University of Miyazaki , Nishi 1-1 Gakuen-Kibanadai , Miyazaki 889-2192 , Japan
| | - Meguru Minamizaki
- Department of Applied Chemistry, Faculty of Engineering , University of Miyazaki , Nishi 1-1 Gakuen-Kibanadai , Miyazaki 889-2192 , Japan
| | - Toshifumi Yui
- Department of Applied Chemistry, Faculty of Engineering , University of Miyazaki , Nishi 1-1 Gakuen-Kibanadai , Miyazaki 889-2192 , Japan
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13
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Du J, Liang J, Gao X, Liu G, Qu Y. Optimization of an artificial cellulase cocktail for high-solids enzymatic hydrolysis of cellulosic materials with different pretreatment methods. BIORESOURCE TECHNOLOGY 2020; 295:122272. [PMID: 31669875 DOI: 10.1016/j.biortech.2019.122272] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 10/14/2019] [Accepted: 10/15/2019] [Indexed: 05/17/2023]
Abstract
Optimization of the composition of cellulase mixtures is an effective strategy to improve their hydrolytic efficiency and reduce protein demand during enzymatic degradation of lignocelluloses. In this study, the mixture design method was used to optimize the ratios of endoglucanase II (EG II), cellobiohydrolase I (CBH I) and β-glucosidase I (BG I) from Penicillium oxalicum in an artificial cellulase mixture for the hydrolysis of six different cellulosic materials. The optimal composition of enzyme mixture was distinctly different among not only cellulosic materials with different pretreatment methods but hydrolyses at different solids concentrations. CBH I was most critical for the hydrolysis of two acid-pretreated materials, probably due to its strong adsorption on lignin. A higher proportion of EG II was needed for the hydrolysis of ammonium sulfite pretreated wheat straw. The requirements of specific cellulase components were more pronounced at high solids concentrations, highlighting the importance of considering solids loading when optimizing cellulase cocktails.
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Affiliation(s)
- Jian Du
- College of Food Science and Pharmaceutical Engineering, Zaozhuang University, Zaozhuang 277160, China; State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, China
| | - Jingrui Liang
- College of Food Science and Pharmaceutical Engineering, Zaozhuang University, Zaozhuang 277160, China
| | - Xiuhua Gao
- College of Food Science and Pharmaceutical Engineering, Zaozhuang University, Zaozhuang 277160, China
| | - Guodong Liu
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, China.
| | - Yinbo Qu
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, China
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14
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Emerging technologies for the pretreatment of lignocellulosic materials for bio-based products. Appl Microbiol Biotechnol 2019; 104:455-473. [DOI: 10.1007/s00253-019-10158-w] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Revised: 09/19/2019] [Accepted: 09/24/2019] [Indexed: 10/25/2022]
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15
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Hickey RJ, Pelling AE. Cellulose Biomaterials for Tissue Engineering. Front Bioeng Biotechnol 2019; 7:45. [PMID: 30968018 PMCID: PMC6438900 DOI: 10.3389/fbioe.2019.00045] [Citation(s) in RCA: 192] [Impact Index Per Article: 38.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2018] [Accepted: 02/25/2019] [Indexed: 12/26/2022] Open
Abstract
In this review, we highlight the importance of nanostructure of cellulose-based biomaterials to allow cellular adhesion, the contribution of nanostructure to macroscale mechanical properties, and several key applications of these materials for fundamental scientific research and biomedical engineering. Different features on the nanoscale can have macroscale impacts on tissue function. Cellulose is a diverse material with tunable properties and is a promising platform for biomaterial development and tissue engineering. Cellulose-based biomaterials offer some important advantages over conventional synthetic materials. Here we provide an up-to-date summary of the status of the field of cellulose-based biomaterials in the context of bottom-up approaches for tissue engineering. We anticipate that cellulose-based material research will continue to expand because of the diversity and versatility of biochemical and biophysical characteristics highlighted in this review.
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Affiliation(s)
- Ryan J. Hickey
- Department of Physics, STEM Complex, University of Ottawa, Ottawa, ON, Canada
| | - Andrew E. Pelling
- Department of Physics, STEM Complex, University of Ottawa, Ottawa, ON, Canada
- Department of Biology, University of Ottawa, Ottawa, ON, Canada
- Institute for Science Society and Policy, University of Ottawa, Ottawa, ON, Canada
- SymbioticA, School of Human Sciences, University of Western Australia, Perth, WA, Australia
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16
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Ezaki T, Nishinari K, Samejima M, Igarashi K. Bridging the Micro-Macro Gap between Single-Molecular Behavior and Bulk Hydrolysis Properties of Cellulase. PHYSICAL REVIEW LETTERS 2019; 122:098102. [PMID: 30932525 DOI: 10.1103/physrevlett.122.098102] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2018] [Revised: 12/07/2018] [Indexed: 06/09/2023]
Abstract
The microscopic kinetics of enzymes at the single-molecule level often deviate considerably from those expected from bulk biochemical experiments. Here, we propose a coarse-grained-model approach to bridge this gap, focusing on the unexpectedly slow bulk hydrolysis of crystalline cellulose by cellulase, which constitutes a major obstacle to mass production of biofuels and biochemicals. Building on our previous success in tracking the movements of single molecules of cellulase on crystalline cellulose, we develop a mathematical description of the collective motion and function of enzyme molecules hydrolyzing the surface of cellulose. Model simulations robustly explained the experimental findings at both the microscopic and macroscopic levels and revealed a hitherto-unknown mechanism causing a considerable slowdown of the reaction, which we call the crowding-out effect. The size of the cellulase molecule impacted significantly on the collective dynamics, whereas the rate of molecular motion on the surface did not.
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Affiliation(s)
- Takahiro Ezaki
- Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
- Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Katsuhiro Nishinari
- Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan
| | - Masahiro Samejima
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Kiyohiko Igarashi
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
- VTT Technical Research Centre of Finland, Tietotie 2, Espoo FI-02044, Finland
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Zhang F, Bunterngsook B, Li JX, Zhao XQ, Champreda V, Liu CG, Bai FW. Regulation and production of lignocellulolytic enzymes from Trichoderma reesei for biofuels production. ADVANCES IN BIOENERGY 2019. [DOI: 10.1016/bs.aibe.2019.03.001] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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18
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Du J, Zhang X, Li X, Zhao J, Liu G, Gao B, Qu Y. The cellulose binding region in Trichoderma reesei cellobiohydrolase I has a higher capacity in improving crystalline cellulose degradation than that of Penicillium oxalicum. BIORESOURCE TECHNOLOGY 2018; 266:19-25. [PMID: 29940438 DOI: 10.1016/j.biortech.2018.06.050] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2018] [Revised: 06/16/2018] [Accepted: 06/18/2018] [Indexed: 06/08/2023]
Abstract
Commercial cellulase preparations for lignocellulose bioconversion are mainly produced by the fungus Trichoderma reesei. The maximum cellulose conversion of T. reesei cellulase mixture was 15%-20% higher than that of Penicillium oxalicum in the hydrolysis of corncob residue and Avicel. Nevertheless, both preparations hydrolyzed more than 92% of cellulose in NaOH-mercerized Avicel. When added to Avicel hydrolysis residue that was less reactive to P. oxalicum cellulases, cellobiohydrolase I (CBH I) from T. reesei resulted in a higher cellulose conversion than its homologous proteins from P. oxalicum and Aspergillus niger at the same protein loadings. Further domain exchange experiment attributed the high hydrolytic efficiency of T. reesei CBH I to its inter-domain linker and cellulose-binding domain. The results in part explained the superior performance of T. reesei cellulases on the degradation of native crystalline cellulose, and highlighted the important role of cellulose-binding region in determining the degree of hydrolysis by cellulases.
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Affiliation(s)
- Jian Du
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, Shandong, PR China
| | - Xiu Zhang
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, Shandong, PR China
| | - Xuezhi Li
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, Shandong, PR China
| | - Jian Zhao
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, Shandong, PR China
| | - Guodong Liu
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, Shandong, PR China; Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao 266237, Shandong, PR China.
| | - Baoyu Gao
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao 266237, Shandong, PR China
| | - Yinbo Qu
- State Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, Shandong, PR China; National Glycoengineering Research Center, Shandong University, Qingdao 266237, Shandong, PR China
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19
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Gong J, Mo L, Li J. A comparative study on the preparation and characterization of cellulose nanocrystals with various polymorphs. Carbohydr Polym 2018; 195:18-28. [DOI: 10.1016/j.carbpol.2018.04.039] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Revised: 03/04/2018] [Accepted: 04/09/2018] [Indexed: 12/01/2022]
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20
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Sakuragi K, Igarashi K, Samejima M. Application of ammonia pretreatment to enable enzymatic hydrolysis of hardwood biomass. Polym Degrad Stab 2018. [DOI: 10.1016/j.polymdegradstab.2017.12.008] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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21
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Salminen R, Baccile N, Reza M, Kontturi E. Surface-Induced Frustration in Solid State Polymorphic Transition of Native Cellulose Nanocrystals. Biomacromolecules 2017; 18:1975-1982. [PMID: 28462998 DOI: 10.1021/acs.biomac.7b00463] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The presence of an interface generally influences crystallization of polymers from melt or from solution. Here, by contrast, we explore the effect of surface immobilization in a direct solid state polymorphic transition on individual cellulose nanocrystals (CNCs), extracted from a plant-based origin. The conversion from native cellulose I to cellulose III crystal occurred via a host-guest inclusion of ethylene diamine inside the crystal. A 60% reduction in CNC width (height) in atomic force microscopy images suggested that when immobilized on a flat modified silica surface, the stresses caused by the inclusion or the subsequent regeneration resulted in exfoliation, hypothetically, between the van der Waals bonded sheets within the crystal. Virtually no changes in dimensions were visible when the polymorphic transition was performed to nonimmobilized CNCs in bulk dispersion. With reservations and by acknowledging the obvious dissimilarities, the exfoliation of cellulose crystal sheets can be viewed as analogous to exfoliation of 2D structures like graphene from a van der Waals stacked solid. Here, the detachment is triggered by an inclusion of a guest molecule inside a host cellulose crystal and the stresses caused by the firm attachment of the CNC on a solid substrate, leading to detachment of molecular sheets or stacks of sheets.
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Affiliation(s)
- Reeta Salminen
- Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University , P.O. Box 16300, 00076 Aalto, Finland
| | - Niki Baccile
- Chimie de la Matière Condensée de Paris, Sorbonne Universités , 75005, Paris, France
| | - Mehedi Reza
- Department of Applied Physics, Aalto University , P.O. Box 11100, 00076 Aalto, Finland
| | - Eero Kontturi
- Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University , P.O. Box 16300, 00076 Aalto, Finland
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22
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Griffith CL, Ribeiro GO, Oba M, McAllister TA, Beauchemin KA. Fermentation of Ammonia Fiber Expansion Treated and Untreated Barley Straw in a Rumen Simulation Technique Using Rumen Inoculum from Cattle with Slow versus Fast Rate of Fiber Disappearance. Front Microbiol 2016; 7:1839. [PMID: 27899919 PMCID: PMC5110516 DOI: 10.3389/fmicb.2016.01839] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2016] [Accepted: 11/01/2016] [Indexed: 12/05/2022] Open
Abstract
The purpose of this study was to determine the effect of rumen inoculum from heifers with fast vs. slow rate of in situ fiber digestion on the fermentation of complex versus easily digested fiber sources in the forms of untreated and Ammonia Fiber Expansion (AFEX) treated barley straw, respectively, using an artificial rumen simulation technique (Rusitec). In situ fiber digestion was measured in a previous study by incubating untreated barley straw in the rumen of 16 heifers fed a diet consisting of 700 g/kg barley straw and 300 g/kg concentrate. The two heifers with fastest rate of digestion (Fast ≥ 4.18% h-1) and the two heifers with the slowest rate of digestion (Slow ≤ 3.17% h-1) were chosen as inoculum donors for this study. Two Rusitec apparatuses each equipped with eight fermenters were used in a completely randomized block design with two blocks (apparatus) and four treatments in a 2 × 2 factorial arrangement of treatments (Fast or Slow rumen inoculum and untreated or AFEX treated straw). Fast rumen inoculum and AFEX straw both increased (P < 0.05) disappearance of dry matter (DMD), organic matter, true DMD, neutral detergent fiber, acid detergent fiber, and nitrogen (N) with an interactive effect between the two (P < 0.05). Fast rumen inoculum increased (P > 0.05) methane production per gram of digested material for both untreated and AFEX straw, and reduced (interaction, P < 0.05) acetate: propionate ratio for untreated straw. Greater relative populations of Ruminococcus albus (P < 0.05) and increased microbial N production (P = 0.045) were observed in Fast rumen inoculum. AFEX straw in Fast inoculum had greater total bacterial populations than Slow, but for untreated straw this result was reversed (interaction, P = 0.013). These findings indicate that differences in microbial populations in rumen fluid contribute to differences in the capacity of rumen inoculum to digest fiber.
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Affiliation(s)
- Candace L Griffith
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, LethbridgeAB, Canada; Agricultural, Food and Nutritional Science, University of Alberta, EdmontonAB, Canada
| | - Gabriel O Ribeiro
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, LethbridgeAB, Canada; CAPES Foundation, Ministry of Education of BrazilBrasília, Brazil
| | - Masahito Oba
- Agricultural, Food and Nutritional Science, University of Alberta, Edmonton AB, Canada
| | - Tim A McAllister
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge AB, Canada
| | - Karen A Beauchemin
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, Lethbridge AB, Canada
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23
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24
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Tachioka M, Sugimoto N, Nakamura A, Sunagawa N, Ishida T, Uchiyama T, Igarashi K, Samejima M. Development of simple random mutagenesis protocol for the protein expression system in Pichia pastoris. BIOTECHNOLOGY FOR BIOFUELS 2016; 9:199. [PMID: 27660653 PMCID: PMC5028916 DOI: 10.1186/s13068-016-0613-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Accepted: 09/07/2016] [Indexed: 06/06/2023]
Abstract
BACKGROUND Random mutagenesis is a powerful technique to obtain mutant proteins with different properties from the wild-type molecule. Error-prone PCR is often employed for random mutagenesis in bacterial protein expression systems, but has rarely been used in the methylotrophic yeast Pichia pastoris system, despite its significant advantages, mainly because large (μg-level) amounts of plasmids are required for transformation. RESULTS We developed a quick and easy technique for random mutagenesis in P. pastoris by sequential Phi29 DNA polymerase-based amplification methods, error-prone rolling circle amplification (RCA) and multiple displacement amplification (MDA). The methodology was validated by applying it for random mutation of the gene encoding cellulase from the basidiomycete Phanerochaete chrysosporium (PcCel6A), a key enzyme in degradation of cellulosic biomass. In the error-prone RCA step, the concentrations of manganese ion (Mn(2+)) and cellulase gene-containing plasmid were varied, and the products obtained under each condition were subjected to the second MDA step in the absence of Mn(2+). The maximum error rate was 2.6 mutations/kb, as evaluated from the results of large-scale sequencing. Several μg of MDA products was transformed by electroporation into Pichia cells, and the activities of extracellularly expressed PcCel6A mutants towards crystalline and amorphous celluloses were compared with those of wild-type enzyme to identify key amino acid residues affecting degradation of crystalline cellulose. CONCLUSIONS We present a rapid and convenient random mutagenesis method that does not require laborious steps such as ligation, cloning, and synthesis of specific primers. This method was successfully applied to the protein expression system in P. pastoris.
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Affiliation(s)
- Mikako Tachioka
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
| | - Naohisa Sugimoto
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
- Biomaterial in Tokyo Co., Ltd., Fukuoka Lab, Ōnojō, Fukuoka 816-0905 Japan
| | - Akihiko Nakamura
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
- Institute for Molecular Science, National Institute of Natural Sciences, Okazaki, 444-8787 Japan
| | - Naoki Sunagawa
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
| | - Takuya Ishida
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
| | - Taku Uchiyama
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
| | - Kiyohiko Igarashi
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
| | - Masahiro Samejima
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi 1-1-1, Bunkyo-ku, Tokyo, 113-8657 Japan
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25
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Silveira RL, Stoyanov SR, Kovalenko A, Skaf MS. Cellulose Aggregation under Hydrothermal Pretreatment Conditions. Biomacromolecules 2016; 17:2582-90. [DOI: 10.1021/acs.biomac.6b00603] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rodrigo L. Silveira
- Institute
of Chemistry, University of Campinas, Caixa Postal 6154, Campinas, São Paulo 13083-970, Brazil
| | - Stanislav R. Stoyanov
- National Institute for Nanotechnology, 11421 Saskatchewan Drive NW, Edmonton, Alberta T6G 2M9, Canada
- Department
of Chemical and Materials Engineering, University of Alberta, 9107 −
116 Street, Edmonton, Alberta T6G 2 V4, Canada
- Department
of Mechanical Engineering, University of Alberta, 4-9 Mechanical
Engineering Building, Edmonton, Alberta T6G 2G8, Canada
- CanmetENERGY-Devon,
Natural Resources Canada, 1 Oil Patch
Drive, Devon, Alberta T9G 1A8, Canada
| | - Andriy Kovalenko
- National Institute for Nanotechnology, 11421 Saskatchewan Drive NW, Edmonton, Alberta T6G 2M9, Canada
- Department
of Mechanical Engineering, University of Alberta, 4-9 Mechanical
Engineering Building, Edmonton, Alberta T6G 2G8, Canada
| | - Munir S. Skaf
- Institute
of Chemistry, University of Campinas, Caixa Postal 6154, Campinas, São Paulo 13083-970, Brazil
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26
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Mathew AK, Parameshwaran B, Sukumaran RK, Pandey A. An evaluation of dilute acid and ammonia fiber explosion pretreatment for cellulosic ethanol production. BIORESOURCE TECHNOLOGY 2016; 199:13-20. [PMID: 26358144 DOI: 10.1016/j.biortech.2015.08.121] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 08/24/2015] [Accepted: 08/27/2015] [Indexed: 06/05/2023]
Abstract
The challenge associated with cellulosic ethanol production is maximizing sugar yield at low cost. Current research is being focused to develop a pretreatment method to overcome biomass recalcitrance in an efficient way. This review is focused on two major pretreatments: dilute acid (DA) and ammonia fiber explosion (AFEX) pretreatment of corn stover and how these pretreatment cause morphological and chemical changes to corn stover in order to overcome the biomass recalcitrance. This review highlights the key differences of these two pretreatments based on compositional analysis, cellulose and its crystallinity, morphological changes, structural changes to lignin, enzymatic reactivity and enzyme adsorption onto pretreated solids and finally cellulosic ethanol production from the hydrolysate of DA and AFEX treated corn stover. Each stage of the process, AFEX pretreated corn stover was superior to DA treated corn stover.
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Affiliation(s)
- Anil Kuruvilla Mathew
- Centre for Biofuels, Biotechnology Division, National Institute for Interdisciplinary Science and Technology (CSIR), Trivandrum 695019, India
| | - Binod Parameshwaran
- Centre for Biofuels, Biotechnology Division, National Institute for Interdisciplinary Science and Technology (CSIR), Trivandrum 695019, India
| | - Rajeev Kumar Sukumaran
- Centre for Biofuels, Biotechnology Division, National Institute for Interdisciplinary Science and Technology (CSIR), Trivandrum 695019, India
| | - Ashok Pandey
- Centre for Biofuels, Biotechnology Division, National Institute for Interdisciplinary Science and Technology (CSIR), Trivandrum 695019, India
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27
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Wang J, Xin D, Hou X, Wu J, Fan X, Li K, Zhang J. Structural properties and hydrolysabilities of Chinese Pennisetum and Hybrid Pennisetum: Effect of aqueous ammonia pretreatment. BIORESOURCE TECHNOLOGY 2016; 199:211-219. [PMID: 26320389 DOI: 10.1016/j.biortech.2015.08.046] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2015] [Revised: 08/13/2015] [Accepted: 08/14/2015] [Indexed: 06/04/2023]
Abstract
The effects of aqueous ammonia pretreatment on structural properties and hydrolysabilities of Chinese Pennisetum and Hybrid Pennisetum were investigated. Aqueous ammonia pretreatment increased cellulose crystallinities and hydrolysabilities of Chinese Pennisetum and Hybrid Pennisetum. Compared with Chinese Pennisetum, Hybrid Pennisetum showed better enzymatic digestibility. Xylanase supplementation was more effective than the increase of cellulase loadings in the hydrolysis of aqueous ammonia pretreated Chinese Pennisetum and Hybrid Pennisetum. After supplementation of 2mg of xylanase/g dry matter to 5 FPU of cellulases/g dry matter, the hydrolysis yields of cellulose of aqueous ammonia pretreated Chinese Pennisetum and Hybrid Pennisetum were 92.3-95.4%, and the hydrolysis yields of xylan were 86.9-94.2%. High hydrolysability and low dosage of enzyme loadings together with the advantages of high yield and widely distribution demonstrated the potential of Chinese Pennisetum and Hybrid Pennisetum for the production of platform sugars.
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Affiliation(s)
- Jingfeng Wang
- College of Forestry, Northwest A&F University, 3 Taicheng Road, Yangling 712100, China
| | - Donglin Xin
- College of Forestry, Northwest A&F University, 3 Taicheng Road, Yangling 712100, China
| | - Xincun Hou
- Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Juying Wu
- Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Xifeng Fan
- Beijing Research and Development Center for Grass and Environment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, China
| | - Kena Li
- College of Forestry, Northwest A&F University, 3 Taicheng Road, Yangling 712100, China
| | - Junhua Zhang
- College of Forestry, Northwest A&F University, 3 Taicheng Road, Yangling 712100, China.
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28
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Ishikawa T, Hayakawa D, Miyamoto H, Ozawa M, Ozawa T, Ueda K. Ab initio studies on the structure of and atomic interactions in cellulose IIII crystals. Carbohydr Res 2015; 417:72-7. [DOI: 10.1016/j.carres.2015.09.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2015] [Revised: 08/24/2015] [Accepted: 09/09/2015] [Indexed: 10/23/2022]
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29
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Rose M, Babi M, Moran-Mirabal J. The Study of Cellulose Structure and Depolymerization Through Single-Molecule Methods. Ind Biotechnol (New Rochelle N Y) 2015. [DOI: 10.1089/ind.2014.0019] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Markus Rose
- Department of Physics and Astronomy, McMaster University, Hamilton, Canada
| | - Mouhanad Babi
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Canada
| | - Jose Moran-Mirabal
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Canada
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30
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Yasuda M, Ishii Y, Ohta K. Napier grass (Pennisetum purpureum Schumach) as raw material for bioethanol production: Pretreatment, saccharification, and fermentation. BIOTECHNOL BIOPROC E 2015. [DOI: 10.1007/s12257-014-0465-y] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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31
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Jalak J, Väljamäe P. Multi-mode binding of Cellobiohydrolase Cel7A from Trichoderma reesei to cellulose. PLoS One 2014; 9:e108181. [PMID: 25265511 PMCID: PMC4180464 DOI: 10.1371/journal.pone.0108181] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2014] [Accepted: 08/19/2014] [Indexed: 01/26/2023] Open
Abstract
Enzymatic hydrolysis of recalcitrant polysaccharides like cellulose takes place on the solid-liquid interface. Therefore the adsorption of enzymes to the solid surface is a pre-requisite for catalysis. Here we used enzymatic activity measurements with fluorescent model-substrate 4-methyl-umbelliferyl-β-D-lactoside for sensitive monitoring of the binding of cellobiohydrolase TrCel7A from Trichoderma reesei to bacterial cellulose (BC). The binding at low nanomolar free TrCel7A concentrations was exclusively active site mediated and was consistent with Langmuir's one binding site model with Kd and Amax values of 2.9 nM and 126 nmol/g BC, respectively. This is the strongest binding observed with non-complexed cellulases and apparently represents the productive binding of TrCel7A to cellulose chain ends on the hydrophobic face of BC microfibril. With increasing free TrCel7A concentrations the isotherm gradually deviated from the Langmuir's one binding site model. This was caused by the increasing contribution of lower affinity binding modes that included both active site mediated binding and non-productive binding with active site free from cellulose chain. The binding of TrCel7A to BC was found to be only partially reversible. Furthermore, the isotherm was dependent on the concentration of BC with more efficient binding observed at lower BC concentrations. The phenomenon can be ascribed to the BC concentration dependent aggregation of BC microfibrils with concomitant reduction of specific surface area.
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Affiliation(s)
- Jürgen Jalak
- Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
| | - Priit Väljamäe
- Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia
- * E-mail:
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32
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Shibafuji Y, Nakamura A, Uchihashi T, Sugimoto N, Fukuda S, Watanabe H, Samejima M, Ando T, Noji H, Koivula A, Igarashi K, Iino R. Single-molecule imaging analysis of elementary reaction steps of Trichoderma reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cellulose Iα and IIII. J Biol Chem 2014; 289:14056-65. [PMID: 24692563 DOI: 10.1074/jbc.m113.546085] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Trichoderma reesei cellobiohydrolase I (TrCel7A) is a molecular motor that directly hydrolyzes crystalline celluloses into water-soluble cellobioses. It has recently drawn attention as a tool that could be used to convert cellulosic materials into biofuel. However, detailed mechanisms of action, including elementary reaction steps such as binding, processive hydrolysis, and dissociation, have not been thoroughly explored because of the inherent challenges associated with monitoring reactions occurring at the solid/liquid interface. The crystalline cellulose Iα and IIII were previously reported as substrates with different crystalline forms and different susceptibilities to hydrolysis by TrCel7A. In this study, we observed that different susceptibilities of cellulose Iα and IIII are highly dependent on enzyme concentration, and at nanomolar enzyme concentration, TrCel7A shows similar rates of hydrolysis against cellulose Iα and IIII. Using single-molecule fluorescence microscopy and high speed atomic force microscopy, we also determined kinetic constants of the elementary reaction steps for TrCel7A against cellulose Iα and IIII. These measurements were performed at picomolar enzyme concentration in which density of TrCel7A on crystalline cellulose was very low. Under this condition, TrCel7A displayed similar binding and dissociation rate constants for cellulose Iα and IIII and similar fractions of productive binding on cellulose Iα and IIII. Furthermore, once productively bound, TrCel7A processively hydrolyzes and moves along cellulose Iα and IIII with similar translational rates. With structural models of cellulose Iα and IIII, we propose that different susceptibilities at high TrCel7A concentration arise from surface properties of substrate, including ratio of hydrophobic surface and number of available lanes.
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Affiliation(s)
- Yusuke Shibafuji
- From the Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
| | - Akihiko Nakamura
- the Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Takayuki Uchihashi
- the Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, Japan, the Bio-AFM Frontier Research Center, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, Japan, and
| | - Naohisa Sugimoto
- the Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Shingo Fukuda
- the Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, Japan
| | - Hiroki Watanabe
- the Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, Japan
| | - Masahiro Samejima
- the Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Toshio Ando
- the Department of Physics, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, Japan, the Bio-AFM Frontier Research Center, College of Science and Engineering, Kanazawa University, Kanazawa 920-1192, Japan, and
| | - Hiroyuki Noji
- From the Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
| | - Anu Koivula
- the VTT Technical Research Centre of Finland, Espoo, FI-02044 VTT, Finland
| | - Kiyohiko Igarashi
- the Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Ryota Iino
- From the Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan,
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33
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Lee DS, Wi SG, Lee SJ, Lee YG, Kim YS, Bae HJ. Rapid saccharification for production of cellulosic biofuels. BIORESOURCE TECHNOLOGY 2014; 158:239-47. [PMID: 24607460 DOI: 10.1016/j.biortech.2014.02.039] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2013] [Revised: 02/07/2014] [Accepted: 02/10/2014] [Indexed: 05/11/2023]
Abstract
The economical production of biofuels is hindered by the recalcitrance of lignocellulose to processing, causing high consumption of processing enzymes and impeding hydrolysis of pretreated lignocellulosic biomass. We determined the major rate-limiting factor in the hydrolysis of popping pre-treated rice straw (PPRS) by examining cellulase adsorption to lignin and cellulose, amorphogenesis of PPRS, and re-hydrolysis. Based on the results, equivalence between enzyme loading and the open structural area of cellulose was required to significantly increase productive adsorption of cellulase and to accelerate enzymatic saccharification of PPRS. Amorphogenesis of PPRS by phosphoric acid treatment to expand open structural area of the cellulose fibers resulted in twofold higher cellulase adsorption and increased the yield of the first re-hydrolysis step from 13% to 46%. The total yield from PPRS was increased to 84% after 3h. These results provide evidence that cellulose structure is one of major effects on the enzymatic hydrolysis.
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Affiliation(s)
- Dae-Seok Lee
- Bio-energy Research Institute, Chonnam National University, Gwangju 500-757, Republic of Korea
| | - Seung Gon Wi
- Bio-energy Research Institute, Chonnam National University, Gwangju 500-757, Republic of Korea
| | - Soo Jung Lee
- Bio-energy Research Institute, Chonnam National University, Gwangju 500-757, Republic of Korea
| | - Yoon-Gyo Lee
- Department of Forest Products and Technology, Chonnam National University, Gwangju 500-757, Republic of Korea
| | - Yeong-Suk Kim
- Department of Forest Products, Kookmin University, Seoul 136-702, Republic of Korea
| | - Hyeun-Jong Bae
- Bio-energy Research Institute, Chonnam National University, Gwangju 500-757, Republic of Korea; Department of Forest Products and Technology, Chonnam National University, Gwangju 500-757, Republic of Korea; Department of Bioenergy Science and Technology, Chonnam National University, Gwangju 500-757, Republic of Korea.
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34
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Ando T, Uchihashi T, Scheuring S. Filming biomolecular processes by high-speed atomic force microscopy. Chem Rev 2014; 114:3120-88. [PMID: 24476364 PMCID: PMC4076042 DOI: 10.1021/cr4003837] [Citation(s) in RCA: 234] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2013] [Indexed: 12/21/2022]
Affiliation(s)
- Toshio Ando
- Department of Physics, and Bio-AFM Frontier
Research Center, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
- CREST,
Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi 332-0012, Japan
| | - Takayuki Uchihashi
- Department of Physics, and Bio-AFM Frontier
Research Center, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
- CREST,
Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi 332-0012, Japan
| | - Simon Scheuring
- U1006
INSERM/Aix-Marseille Université, Parc Scientifique et Technologique
de Luminy Bâtiment Inserm TPR2 bloc 5, 163 avenue de Luminy, 13288 Marseille Cedex 9, France
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35
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Nakamura A, Watanabe H, Ishida T, Uchihashi T, Wada M, Ando T, Igarashi K, Samejima M. Trade-off between processivity and hydrolytic velocity of cellobiohydrolases at the surface of crystalline cellulose. J Am Chem Soc 2014; 136:4584-92. [PMID: 24571226 DOI: 10.1021/ja4119994] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Analysis of heterogeneous catalysis at an interface is difficult because of the variety of reaction sites and the difficulty of observing the reaction. Enzymatic hydrolysis of cellulose by cellulases is a typical heterogeneous reaction at a solid/liquid interface, and a key parameter of such reactions on polymeric substrates is the processivity, i.e., the number of catalytic cycles that can occur without detachment of the enzyme from the substrate. In this study, we evaluated the reactions of three closely related glycoside hydrolase family 7 cellobiohydrolases from filamentous fungi at the molecular level by means of high-speed atomic force microscopy to investigate the structure-function relationship of the cellobiohydrolases on crystalline cellulose. We found that high moving velocity of enzyme molecules on the surface is associated with a high dissociation rate constant from the substrate, which means weak interaction between enzyme and substrate. Moreover, higher values of processivity were associated with more loop regions covering the subsite cleft, which may imply higher binding affinity. Loop regions covering the subsites result in stronger interaction, which decreases the velocity but increases the processivity. These results indicate that there is a trade-off between processivity and hydrolytic velocity among processive cellulases.
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Affiliation(s)
- Akihiko Nakamura
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo , Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
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36
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Cui T, Li J, Yan Z, Yu M, Li S. The correlation between the enzymatic saccharification and the multidimensional structure of cellulose changed by different pretreatments. BIOTECHNOLOGY FOR BIOFUELS 2014; 7:134. [PMID: 25278995 PMCID: PMC4177413 DOI: 10.1186/s13068-014-0134-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Accepted: 09/01/2014] [Indexed: 05/09/2023]
Abstract
BACKGROUND The bioconversion of cellulose into simple sugars or chemicals has attracted extensive attention in recent decades. The crystal allomorphs of cellulose are key factor affecting cellulose saccharification. However, due to the influence of lignin, hemicelluloses, and different characterization methods in the literature, the effect of cellulose allomorphs on cellulose saccharification is still unresolved. Thus, a systematic research on the effect of different cellulose allomorphs on enzymatic saccharification was required. RESULTS Multiple approaches, including the use of ionic liquid (IL), ethylenediamine (EDA), glycerol, and sodium hydroxide, were used to pretreat α-cellulose in this work. The properties of the obtained cellulose (crystallinity, lattice spacing, specific surface area, and wettability) were characterized by X-ray diffraction, Brunauer, Emmett, and Teller (BET) specific surface area analysis, and water contact angle analysis, respectively. The distance of the lattice spacing of cellulose III was longer than that of other cellulose samples. The crystallinity and water contact angles of the cellulose samples were ranked in the following order: cellulose treated with IL < cellulose treated with NaOH < cellulose treated with EDA < cellulose without treatment < cellulose treated with glycerol. Cellulose treated with IL, with a crystallinity index value of 20%, was very close to amorphous cellulose. After 72 h hydrolysis, the cellulose conversion ratio ranged from 43% to 99%. Cellulose treated with IL exhibited the best hydrolysis profile, followed by cellulose treated with EDA. CONCLUSION Ionic liquid pretreatment significantly altered the ultrastructure and morphology of cellulose samples, making cellulose much easier for enzymes to digest due to its significantly high amorphous content. However, when the impact of amorphous content was not considered, the allomorph easiest for enzymes to digest was cellulose III, followed by cellulose II, cellulose Iα, and cellulose Iβ. When the cellulose crystallinity index was similar, the allomorph type was the dominant factor. The amorphous content had a strong positive influence on cellulose digestibility. Water contact angle was also an important factor in evaluating the enzymatic hydrolysis efficiency of cellulose except for cellulose III. A high wettability of cellulose enhanced the enzymatic hydrolysis when the crystal allomorph of all the cellulosic samples was the same.
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Affiliation(s)
- Ting Cui
- />Institute of Nuclear and New Energy Technology, Tsinghua University, Beijing, 100084 China
- />Beijing Engineering Research Centre of Biofuels, Tsinghua University, Beijing, 100084 China
| | - Jihong Li
- />Institute of Nuclear and New Energy Technology, Tsinghua University, Beijing, 100084 China
- />Beijing Engineering Research Centre of Biofuels, Tsinghua University, Beijing, 100084 China
| | - Zhipei Yan
- />Institute of Nuclear and New Energy Technology, Tsinghua University, Beijing, 100084 China
- />Beijing Engineering Research Centre of Biofuels, Tsinghua University, Beijing, 100084 China
| | - Menghui Yu
- />Institute of Nuclear and New Energy Technology, Tsinghua University, Beijing, 100084 China
- />Beijing Engineering Research Centre of Biofuels, Tsinghua University, Beijing, 100084 China
| | - Shizhong Li
- />Institute of Nuclear and New Energy Technology, Tsinghua University, Beijing, 100084 China
- />Beijing Engineering Research Centre of Biofuels, Tsinghua University, Beijing, 100084 China
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37
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Teramura H, Oshima T, Matsuda F, Sasaki K, Ogino C, Yamasaki M, Kondo A. Glucose content in the liquid hydrolysate after dilute acid pretreatment is affected by the starch content in rice straw. BIORESOURCE TECHNOLOGY 2013; 149:520-524. [PMID: 24140898 DOI: 10.1016/j.biortech.2013.09.109] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2013] [Revised: 09/20/2013] [Accepted: 09/24/2013] [Indexed: 06/02/2023]
Abstract
Lignocellulosic biomass, such as rice straw, is often utilized as a bioresource after being hydrolyzed using dilute acid and separated into liquid hydrolysate and acid-insoluble residue. However, the biomass component that determines the distribution between liquid hydrolysate and acid-insoluble residue has not yet been clarified. In this study, the glucose content in the liquid hydrolysate and weight of acid-insoluble residue of 13 rice cultivars were analyzed. Starch content was positively correlated with glucose content in the liquid hydrolysate, and negatively correlated with acid-insoluble residue weight. These results indicate that the glucose in the liquid hydrolysate is mainly liberated from starch rather than cellulose in the rice straw. These observations suggest that starch content is a good indicator of the glucose distribution between the liquid hydrolysate and insoluble residue.
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Affiliation(s)
- Hiroshi Teramura
- Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, 1-1 Rokkodaicho, Nada-ku, Kobe, Hyogo 657-8501, Japan
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38
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Rajendran A, Endo M, Sugiyama H. State-of-the-Art High-Speed Atomic Force Microscopy for Investigation of Single-Molecular Dynamics of Proteins. Chem Rev 2013; 114:1493-520. [DOI: 10.1021/cr300253x] [Citation(s) in RCA: 70] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Arivazhagan Rajendran
- Department
of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho
Sakyo-ku, Kyoto 606-8502, Japan
| | - Masayuki Endo
- Institute
for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Yoshida-ushinomiyacho,
Sakyo-ku, Kyoto 606-8501, Japan
- CREST, Japan Science and Technology Corporation (JST), Sanbancho, Chiyoda-ku, Tokyo 102-0075, Japan
| | - Hiroshi Sugiyama
- Department
of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho
Sakyo-ku, Kyoto 606-8502, Japan
- Institute
for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Yoshida-ushinomiyacho,
Sakyo-ku, Kyoto 606-8501, Japan
- CREST, Japan Science and Technology Corporation (JST), Sanbancho, Chiyoda-ku, Tokyo 102-0075, Japan
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39
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Horikawa Y, Konakahara N, Imai T, Kentaro A, Kobayashi Y, Sugiyama J. The structural changes in crystalline cellulose and effects on enzymatic digestibility. Polym Degrad Stab 2013. [DOI: 10.1016/j.polymdegradstab.2013.08.004] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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40
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Abitbol T, Palermo A, Moran-Mirabal JM, Cranston ED. Fluorescent labeling and characterization of cellulose nanocrystals with varying charge contents. Biomacromolecules 2013; 14:3278-84. [PMID: 23952644 DOI: 10.1021/bm400879x] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Cotton-source cellulose nanocrystals (CNCs) with a range of surface charge densities were fluorescently labeled with 5-(4, 6-dichlorotriazinyl) aminofluorescein (DTAF) in a facile, one-pot reaction under alkaline conditions. Three CNC samples were labeled: (I) anionic CNCs prepared by sulfuric acid hydrolysis with a sulfur content of 0.47 wt %, (II) a partially desulfated, sulfuric acid-hydrolyzed CNC sample, which was less anionic with an intermediate sulfur content of 0.21 wt %, and (III) uncharged CNCs prepared by HCl hydrolysis. The DTAF-labeled CNCs were characterized by dynamic light scattering, atomic force microscopy, fluorescence spectroscopy and microscopy, and polarized light microscopy. Fluorescent CNCs exhibited similar colloidal stability to the starting CNCs, with the exception of the HCl-hydrolyzed sample, which became less agglomerated after the labeling reaction. The degree of labeling depended on the sulfur content of the CNCs, indicating that the presence of sulfate half-ester groups on the CNC surfaces hindered labeling. The labeling reaction produced CNCs that had detectable fluorescence, without compromising the overall surface chemistry or behavior of the materials, an aspect relevant to studies that require a fluorescent cellulose substrate with intact native properties. The DTAF-labeled CNCs were proposed as optical markers for the dispersion quality of CNC-loaded polymer composites. Electrospun polyvinyl alcohol fibers loaded with DTAF-labeled CNCs appeared uniformly fluorescent by fluorescence microscopy, suggesting that the nanoparticles were well dispersed within the polymer matrix.
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Affiliation(s)
- Tiffany Abitbol
- Departments of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, Ontario, Canada.
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41
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Hydration and saccharification of cellulose Iβ, II and IIII at increasing dry solids loadings. Biotechnol Lett 2013; 35:1599-607. [DOI: 10.1007/s10529-013-1258-7] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2013] [Accepted: 05/24/2013] [Indexed: 12/01/2022]
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42
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Bubner P, Plank H, Nidetzky B. Visualizing cellulase activity. Biotechnol Bioeng 2013; 110:1529-49. [DOI: 10.1002/bit.24884] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2012] [Revised: 01/08/2013] [Accepted: 02/22/2013] [Indexed: 11/08/2022]
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43
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Thao Ho TT, Zimmermann T, Caseri WR, Smith P. Liquid ammonia treatment of (cationic) nanofibrillated cellulose/vermiculite composites. ACTA ACUST UNITED AC 2013. [DOI: 10.1002/polb.23241] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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44
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He P, Chai L, Li L, Hao L, Shao L, Lü F. In situ visualization of the change in lignocellulose biodegradability during extended anaerobic bacterial degradation. RSC Adv 2013. [DOI: 10.1039/c3ra40654g] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
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45
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Yasuda M, Takeo K, Nagai H, Uto T, Yui T, Matsumoto T, Ishii Y, Ohta K. Enhancement of Ethanol Production from Napiergrass (<i>Pennisetum purpureum</i> Schumach) by a Low-Moisture Anhydrous Ammonia Pretreatment. ACTA ACUST UNITED AC 2013. [DOI: 10.4236/jsbs.2013.33025] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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46
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Sugimoto N, Igarashi K, Wada M, Samejima M. Adsorption characteristics of fungal family 1 cellulose-binding domain from Trichoderma reesei cellobiohydrolase I on crystalline cellulose: negative cooperative adsorption via a steric exclusion effect. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:14323-14329. [PMID: 22950684 DOI: 10.1021/la302352k] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Cellobiohydrolases (CBHs) hydrolyzing crystalline cellulose share a two-domain structure of catalytic domain (CD) and cellulose-binding domain (CBD). To focus on the binding characteristics of CBD, we analyzed the adsorption of fusion protein of fungal family 1 CBD from Trichoderma reesei CBH I and red-fluorescent protein on crystalline and amorphous celluloses. Binding data were better fitted by Hill's model with negative cooperativity than by other adsorption models, suggesting the occurrence of a steric exclusion effect among the fusion molecules on the cellulose surfaces. The degree of negative cooperativity depended on the nature of the cellulose. The significance of this phenomenon for catalysis by intact CBHI is discussed.
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Affiliation(s)
- Naohisa Sugimoto
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
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47
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Gao AH, Bule MV, Laskar DD, Chen S. Structural and thermal characterization of wheat straw pretreated with aqueous ammonia soaking. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2012; 60:8632-8639. [PMID: 22882009 DOI: 10.1021/jf301244m] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Production of renewable fuels and chemicals from lignocellulosic feedstocks requires an efficient pretreatment technology to allow ready access of polysaccharides for cellulolytic enzymes during saccharification. The effect of pretreatment on wheat straw through a low-temperature and low-pressure soaking aqueous ammonia (SAA) process was investigated in this study using Fourier transform infrared (FTIR), pyrolysis-gas chromatography/mass spectroscopy (Py-GC/MS), solid and liquid state nuclear magnetic resonance (NMR), and thermogravimetry/differential thermogravimetry (TG/DTG) to demonstrate the changes in lignin, hemicellulose, and cellulose structure. After treatment of 60 mesh wheat straw particles for 60 h with 28-30% ammonium hydroxide (1:10 solid/liquid) at 50 °C, sugar recovery increased from 14% (untreated) to 67% (SAA treated). The FTIR study revealed a substantial decrease in absorbance of lignin peaks. Solid and liquid state NMR showed minimal lignin structural changes with significant compositional changes. Activation energy of control and pretreated wheat straw was calculated according to the Friedman and ASTM methods and found to be decreased for SAA-treated wheat straw, from 259 to 223 kJ/mol. The SAA treatment was shown to remove significant amounts of lignin without strongly affecting lignin functional groups or structure.
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Affiliation(s)
- Allan H Gao
- Department of Biological Systems Engineering, Washington State University, Pullman, Washington 99164-6120, United States
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48
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Sawada D, Nishiyama Y, Langan P, Forsyth VT, Kimura S, Wada M. Water in crystalline fibers of dihydrate β-chitin results in unexpected absence of intramolecular hydrogen bonding. PLoS One 2012; 7:e39376. [PMID: 22724007 PMCID: PMC3378566 DOI: 10.1371/journal.pone.0039376] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2012] [Accepted: 05/21/2012] [Indexed: 11/18/2022] Open
Abstract
The complete crystal structure (including hydrogen) of dihydrate β-chitin, a homopolymer of N-acetylglucosamine hydrate, was determined using high-resolution X-ray and neutron fiber diffraction data collected from bathophilous tubeworm Lamellibrachia satsuma. Two water molecules per N-acetylglucosamine residue are clearly localized in the structure and these participate in most of the hydrogen bonds. The conformation of the labile acetamide groups and hydroxymethyl groups are similar to those found in anhydrous β-chitin, but more relaxed. Unexpectedly, the intrachain O3-H…O5 hydrogen bond typically observed for crystalline β,1–4 glycans is absent, providing important insights into its relative importance and its relationship to solvation.
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Affiliation(s)
- Daisuke Sawada
- Department of Biomaterials Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
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49
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Garlock RJ, Balan V, Dale BE. Optimization of AFEX™ pretreatment conditions and enzyme mixtures to maximize sugar release from upland and lowland switchgrass. BIORESOURCE TECHNOLOGY 2012; 104:757-68. [PMID: 22138594 DOI: 10.1016/j.biortech.2011.11.034] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2011] [Revised: 11/07/2011] [Accepted: 11/09/2011] [Indexed: 05/21/2023]
Abstract
Switchgrass is a North American grass that is considered to be a highly promising herbaceous bioenergy feedstock. Differences in processing conditions and yields specifically related to switchgrass cultivar or cytotype (upland or lowland) can be confounded by differences in harvest date or region of growth. For this research, AFEX™ pretreatment conditions and hydrolysis enzyme mixtures were statistically optimized for Alamo (lowland) and Shawnee (upland) switchgrass that had been harvested in December in Oklahoma. Optimal pretreatment conditions and enzyme mixtures were almost identical for both varieties and gave similar mass sugar yields. Inclusion of hemicellulases in the enzyme mixture maintained total sugar yields with 50% reduction in enzyme loading. Regardless of variety, the biorefinery should be able to obtain high sugar yields using the same pretreatment and hydrolysis conditions to process switchgrass grown under the same environmental conditions, in the same location, and harvested at the same time of the year.
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Affiliation(s)
- Rebecca J Garlock
- Biomass Conversion Research Laboratory, Department of Chemical Engineering and Materials Science, Michigan State University, MI 48824, USA.
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50
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Igarashi K, Uchihashi T, Koivula A, Wada M, Kimura S, Penttilä M, Ando T, Samejima M. Visualization of cellobiohydrolase I from Trichoderma reesei moving on crystalline cellulose using high-speed atomic force microscopy. Methods Enzymol 2012; 510:169-82. [PMID: 22608726 DOI: 10.1016/b978-0-12-415931-0.00009-4] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Cellulases hydrolyze β-1,4-glucosidic linkages of insoluble cellulose at the solid/liquid interface, generating soluble cellooligosaccharides. We describe here our method for real-time observation of the behavior of cellulase molecules on the substrate, using high-speed atomic force microscopy (HS-AFM). When glycoside hydrolase family 7 cellobiohydrolase from Trichoderma reesei (TrCel7A) was incubated with crystalline cellulose, many enzyme molecules were observed to move unidirectionally on the surface of the substrate by HS-AFM. The velocity of the moving molecules of TrCel7A on cellulose I crystals was estimated by means of image analysis.
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Affiliation(s)
- Kiyohiko Igarashi
- Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
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