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Xu H, Teng H, Zhang B, Liu W, Sui Y, Yan X, Wang Z, Cui H, Zhang H. NtHD9 modulates plant salt tolerance by regulating the formation of glandular trichome heads in Nicotiana tabacum. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 212:108765. [PMID: 38795550 DOI: 10.1016/j.plaphy.2024.108765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 05/13/2024] [Accepted: 05/21/2024] [Indexed: 05/28/2024]
Abstract
Salt stress is one of the main abiotic factor affecting plant growth. We have previously identified a key gene (NtHD9) in Nicotiana tabacum L. that positively regulates the formation of long glandular trichomes (LGTs). Here, we verified that both abiotic stress (aphids, drought and salt stress) could restore the phenotype lacking LGTs in NtHD9-knockout (NtHD9-KO) plants. The abiotic stress response assays indicated that NtHD9 is highly sensitive to salt stress. Compared with cultivated tobacco "K326" (CK) plants, NtHD9-overexpressing (NtHD9-OE) plants with more LGTs exhibited stronger salt tolerance, whereas NtHD9-KO with no LGTs showed weaker tolerance to salt. The densities and sizes of the glandular heads gradually increased with increasing NaCl concentrations in NtHD9-KO plants. Mineral element determination showed that leaves and trichomes of NtHD9-OE plants accumulated less Na+ but had higher K+ contents under salt stress, thus maintaining ion homeostasis in plants, which could contribute to a robust photosynthetic and antioxidant system under salt stress. Therefore, NtHD9-OE plants maintained a larger leaf area and root length under high-salt conditions than CK and NtHD9-KO plants. We verified that NtHD9 could individually interact with NtHD5, NtHD7, NtHD12, and NtJAZ10 proteins. Salt stress led to an increase in jasmonic acid (JA) levels and activated the expression of NtHDs while inhibiting the expression of NtJAZ. This study suggests that the glandular heads play an important role in plant resistance to salt stress. The activation of JA signaling leading to JAZ protein degradation may be key factors regulating the glandular heads development under salt stress.
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Affiliation(s)
- Hanchi Xu
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Huanyu Teng
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Bokai Zhang
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Wei Liu
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Yalin Sui
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Xiaoxiao Yan
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Zhaojun Wang
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China
| | - Hong Cui
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China.
| | - Hongying Zhang
- Key Laboratory for Cultivation of Tobacco Industry, College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450046, China.
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2
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Sessa G, Carabelli M, Sassi M. The Ins and Outs of Homeodomain-Leucine Zipper/Hormone Networks in the Regulation of Plant Development. Int J Mol Sci 2024; 25:5657. [PMID: 38891845 PMCID: PMC11171833 DOI: 10.3390/ijms25115657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 05/20/2024] [Accepted: 05/21/2024] [Indexed: 06/21/2024] Open
Abstract
The generation of complex plant architectures depends on the interactions among different molecular regulatory networks that control the growth of cells within tissues, ultimately shaping the final morphological features of each structure. The regulatory networks underlying tissue growth and overall plant shapes are composed of intricate webs of transcriptional regulators which synergize or compete to regulate the expression of downstream targets. Transcriptional regulation is intimately linked to phytohormone networks as transcription factors (TFs) might act as effectors or regulators of hormone signaling pathways, further enhancing the capacity and flexibility of molecular networks in shaping plant architectures. Here, we focus on homeodomain-leucine zipper (HD-ZIP) proteins, a class of plant-specific transcriptional regulators, and review their molecular connections with hormonal networks in different developmental contexts. We discuss how HD-ZIP proteins emerge as key regulators of hormone action in plants and further highlight the fundamental role that HD-ZIP/hormone networks play in the control of the body plan and plant growth.
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Affiliation(s)
| | | | - Massimiliano Sassi
- Istituto di Biologia e Patologia Molecolari, Consiglio Nazionale delle Ricerche, 00185 Rome, Italy; (G.S.); (M.C.)
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3
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Schrick K, Ahmad B, Nguyen HV. HD-Zip IV transcription factors: Drivers of epidermal cell fate integrate metabolic signals. CURRENT OPINION IN PLANT BIOLOGY 2023; 75:102417. [PMID: 37441837 PMCID: PMC10527651 DOI: 10.1016/j.pbi.2023.102417] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 06/14/2023] [Accepted: 06/14/2023] [Indexed: 07/15/2023]
Abstract
The leaf epidermis comprises the outermost layer of cells that protect plants against environmental stresses such as drought, ultraviolet radiation, and pathogen attack. Research over the past decades highlights the role of class IV homeodomain leucine-zipper (HD-Zip IV) transcription factors (TFs) in driving differentiation of various epidermal cell types, such as trichomes, guard cells, and pavement cells. Evolutionary origins of this family in the charophycean green algae and HD-Zip-specific gene expression in the maternal genome provide clues to unlocking their secrets which include ties to cell cycle regulation. A distinguishing feature of these TFs is the presence of a lipid binding pocket that integrates metabolic information with gene expression. Identities of metabolic partners are beginning to emerge, uncovering feedback loops to maintain epidermal cell specification. Discoveries of associated molecular mechanisms are revealing fascinating links to phospholipid and sphingolipid metabolism and mechanical signaling.
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Affiliation(s)
- Kathrin Schrick
- Molecular, Cellular, and Developmental Biology, Kansas State University, Manhattan, KS 66506, USA; Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
| | - Bilal Ahmad
- Molecular, Cellular, and Developmental Biology, Kansas State University, Manhattan, KS 66506, USA; Division of Biology, Kansas State University, Manhattan, KS 66506, USA
| | - Hieu V Nguyen
- Division of Biology, Kansas State University, Manhattan, KS 66506, USA
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4
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Zhang J, Jia X, Wang GF, Ma S, Wang S, Yang Q, Chen X, Zhang Y, Lyu Y, Wang X, Shi J, Zhao Y, Chen Y, Wu L. Ascorbate peroxidase 1 confers resistance to southern corn leaf blight in maize. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2022; 64:1196-1211. [PMID: 35319160 DOI: 10.1111/jipb.13254] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Accepted: 03/17/2022] [Indexed: 06/14/2023]
Abstract
Southern corn leaf blight (SCLB), caused by Bipolaris maydis, is one of the most devastating diseases affecting maize production. However, only one SLCB resistance gene, conferring partial resistance, is currently known, underscoring the importance of isolating new SCLB resistance-related genes. Here, we performed a comparative proteomic analysis and identified 258 proteins showing differential abundance during the maize response to B. maydis. These proteins included an ascorbate peroxidase (Zea mays ascorbate peroxidase 1 (ZmAPX1)) encoded by a gene located within the mapping interval of a previously identified quantitative trait locus associated with SCLB resistance. ZmAPX1 overexpression resulted in lower H2 O2 accumulation and enhanced resistance against B. maydis. Jasmonic acid (JA) contents and transcript levels for JA biosynthesis and responsive genes increased in ZmAPX1-overexpressing plants infected with B. maydis, whereas Zmapx1 mutants showed the opposite effects. We further determined that low levels of H2 O2 are accompanied by an accumulation of JA that enhances SCLB resistance. These results demonstrate that ZmAPX1 positively regulates SCLB resistance by decreasing H2 O2 accumulation and activating the JA-mediated defense signaling pathway. This study identified ZmAPX1 as a potentially useful gene for increasing SCLB resistance. Furthermore, the generated data may be relevant for clarifying the functions of plant APXs.
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Affiliation(s)
- Jinghua Zhang
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Xingmeng Jia
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Guan-Feng Wang
- The Key Laboratory of Plant Development and Environmental Adaptation Biologym, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China
| | - Shijun Ma
- The Key Laboratory of Plant Development and Environmental Adaptation Biologym, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China
| | - Shunxi Wang
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Qin Yang
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy, Northwest A&F University, Yangling, 712100, China
| | - Xueyan Chen
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yuqian Zhang
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
- School of Environmental and Rural Science, University of New England, Armidale, 2351, NSW, Australia
| | - Yajing Lyu
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Xiaoxu Wang
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Jiawei Shi
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yangtao Zhao
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yanhui Chen
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Liuji Wu
- National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
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Genome-Wide Identification and Expression Analysis of Homeodomain Leucine Zipper Subfamily IV (HD-ZIP IV) Gene Family in Cannabis sativa L. PLANTS 2022; 11:plants11101307. [PMID: 35631732 PMCID: PMC9144208 DOI: 10.3390/plants11101307] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 05/06/2022] [Accepted: 05/10/2022] [Indexed: 12/19/2022]
Abstract
The plant-specific homeodomain zipper family (HD-ZIP) of transcription factors plays central roles in regulating plant development and environmental resistance. HD-ZIP transcription factors IV (HDZ IV) have been involved primarily in the regulation of epidermal structure development, such as stomata and trichomes. In our study, we identified nine HDZ IV-encoding genes in Cannabis sativa L. by conducting a computational analysis of cannabis genome resources. Our analysis suggests that these genes putatively encode proteins that have all the conserved domains of HDZ IV transcription factors. The phylogenetic analysis of HDZ IV gene family members of cannabis, rice (Oryza sativa), and Arabidopsis further implies that they might have followed distinct evolutionary paths after divergence from a common ancestor. All the identified cannabis HDZ IV gene promoter sequences have multiple regulation motifs, such as light- and hormone-responsive elements. Furthermore, experimental evidence shows that different HDZ IV genes have different expression patterns in root, stem, leaf, and flower tissues. Four genes were primarily expressed in flowers, and the expression of CsHDG5 (XP_030501222.1) was also correlated with flower maturity. Fifty-nine genes were predicted as targets of HDZ IV transcription factors. Some of these genes play central roles in pathogen response, flower development, and brassinosteroid signaling. A subcellular localization assay indicated that one gene of this family is localized in the Arabidopsis protoplast nucleus. Taken together, our work lays fundamental groundwork to illuminate the function of cannabis HDZ IV genes and their possible future uses in increasing cannabis trichome morphogenesis and secondary metabolite production.
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Mazzoni-Putman SM, Brumos J, Zhao C, Alonso JM, Stepanova AN. Auxin Interactions with Other Hormones in Plant Development. Cold Spring Harb Perspect Biol 2021; 13:a039990. [PMID: 33903155 PMCID: PMC8485746 DOI: 10.1101/cshperspect.a039990] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Auxin is a crucial growth regulator that governs plant development and responses to environmental perturbations. It functions at the heart of many developmental processes, from embryogenesis to organ senescence, and is key to plant interactions with the environment, including responses to biotic and abiotic stimuli. As remarkable as auxin is, it does not act alone, but rather solicits the help of, or is solicited by, other endogenous signals, including the plant hormones abscisic acid, brassinosteroids, cytokinins, ethylene, gibberellic acid, jasmonates, salicylic acid, and strigolactones. The interactions between auxin and other hormones occur at multiple levels: hormones regulate one another's synthesis, transport, and/or response; hormone-specific transcriptional regulators for different pathways physically interact and/or converge on common target genes; etc. However, our understanding of this crosstalk is still fragmentary, with only a few pieces of the gigantic puzzle firmly established. In this review, we provide a glimpse into the complexity of hormone interactions that involve auxin, underscoring how patchy our current understanding is.
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Affiliation(s)
- Serina M Mazzoni-Putman
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina 27695, USA
| | - Javier Brumos
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina 27695, USA
| | - Chengsong Zhao
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina 27695, USA
| | - Jose M Alonso
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina 27695, USA
| | - Anna N Stepanova
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina 27695, USA
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7
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Hidvégi N, Gulyás A, Teixeira da Silva JA, Wicaksono A, Kiss E. Promoter analysis of the SPATULA (FvSPT) and SPIRAL (FvSPR) genes in the woodland diploid strawberry (Fragaria vesca L.). Biol Futur 2021; 72:373-384. [PMID: 34554560 DOI: 10.1007/s42977-021-00089-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Accepted: 05/07/2021] [Indexed: 11/28/2022]
Abstract
The aim of this study was to identify transcription factor (TF) binding sites and cis-regulatory elements (CREs) on the promoters of FvSPR1-like2 (SPIRAL) and FvSPT (SPATULA) genes in the woodland diploid strawberry (Fragaria vesca L.). We identified: (1) MYB59, WRKY25 and WRKY8 TFs which play a role in ethylene signaling; (2) ARF family of TFs which play a role in ARF-mediated auxin signaling on the promoter of FvSPR1-like2 gene; (3) ARR family of TFs which play a role in cytokinin signaling; (4) ERF family of TFs which play a role in ethylene signaling on the promoter of FvSPT. This bioinformatic analysis of TFs and CREs may provide a better understanding of the function of genes involved in, and the mechanism underlying, non-climateric ripening during strawberry fruit maturation.
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Affiliation(s)
- Norbert Hidvégi
- Centre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Science and Environmental Management, University of Debrecen, P.O. Box 12, Nyíregyháza, 4400, Hungary.
| | - Andrea Gulyás
- Centre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Science and Environmental Management, University of Debrecen, P.O. Box 12, Nyíregyháza, 4400, Hungary
| | - Jaime A Teixeira da Silva
- Centre for Agricultural Genomics and Biotechnology, Faculty of Agricultural and Food Science and Environmental Management, University of Debrecen, P.O. Box 12, Nyíregyháza, 4400, Hungary.,Independent Researcher, Miki-cho post office, Ikenobe 3011-2, P. O. Box 7, Kagawa-ken, 761-0799, Japan
| | - Adhityo Wicaksono
- Division of Biotechnology, Generasi Biologi Indonesia Foundation, Jl. Swadaya Barat no. 4, Gresik Regency, 61171, Indonesia
| | - Erzsébet Kiss
- Institute of Genetics, Microbiology and Biotechnology, Faculty of Agricultural and Environmental Sciences, Hungarian University of Agriculture and Life Sciences, Páter Károly u. 1, 2100, Gödöllő, Hungary.
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Sharif R, Raza A, Chen P, Li Y, El-Ballat EM, Rauf A, Hano C, El-Esawi MA. HD-ZIP Gene Family: Potential Roles in Improving Plant Growth and Regulating Stress-Responsive Mechanisms in Plants. Genes (Basel) 2021; 12:genes12081256. [PMID: 34440430 PMCID: PMC8394574 DOI: 10.3390/genes12081256] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 08/06/2021] [Accepted: 08/12/2021] [Indexed: 12/11/2022] Open
Abstract
Exploring the molecular foundation of the gene-regulatory systems underlying agronomic parameters or/and plant responses to both abiotic and biotic stresses is crucial for crop improvement. Thus, transcription factors, which alone or in combination directly regulated the targeted gene expression levels, are appropriate players for enlightening agronomic parameters through genetic engineering. In this regard, homeodomain leucine zipper (HD-ZIP) genes family concerned with enlightening plant growth and tolerance to environmental stresses are considered key players for crop improvement. This gene family containing HD and LZ domain belongs to the homeobox superfamily. It is further classified into four subfamilies, namely HD-ZIP I, HD-ZIP II, HD-ZIP III, and HD-ZIP IV. The first HD domain-containing gene was discovered in maize cells almost three decades ago. Since then, with advanced technologies, these genes were functionally characterized for their distinct roles in overall plant growth and development under adverse environmental conditions. This review summarized the different functions of HD-ZIP genes in plant growth and physiological-related activities from germination to fruit development. Additionally, the HD-ZIP genes also respond to various abiotic and biotic environmental stimuli by regulating defense response of plants. This review, therefore, highlighted the various significant aspects of this important gene family based on the recent findings. The practical application of HD-ZIP biomolecules in developing bioengineered plants will not only mitigate the negative effects of environmental stresses but also increase the overall production of crop plants.
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Affiliation(s)
- Rahat Sharif
- Department of Horticulture, College of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China;
- College of Horticulture, Northwest A&F University, Yangling 712100, China
| | - Ali Raza
- Fujian Provincial Key Laboratory of Crop Molecular and Cell Biology, Oil Crops Research Institute, Center of Legume Crop Genetics and Systems Biology, College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China;
- Key Laboratory of Biology and Genetic Improvement of Oil Crops, Oil Crops Research Institute, Chinese Academy of Agriculture Science (CAAS), Wuhan 430062, China
| | - Peng Chen
- College of Life Science, Northwest A&F University, Yangling 712100, China;
| | - Yuhong Li
- College of Horticulture, Northwest A&F University, Yangling 712100, China
- Correspondence: (Y.L.); (M.A.E.-E.)
| | - Enas M. El-Ballat
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt;
| | - Abdur Rauf
- Department of Chemistry, University of Swabi, Anbar 23430, Pakistan;
| | - Christophe Hano
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), INRAE USC1328, Université d’Orléans, 28000 Chartres, France;
| | - Mohamed A. El-Esawi
- Botany Department, Faculty of Science, Tanta University, Tanta 31527, Egypt;
- Correspondence: (Y.L.); (M.A.E.-E.)
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Betti C, Della Rovere F, Piacentini D, Fattorini L, Falasca G, Altamura MM. Jasmonates, Ethylene and Brassinosteroids Control Adventitious and Lateral Rooting as Stress Avoidance Responses to Heavy Metals and Metalloids. Biomolecules 2021; 11:biom11010077. [PMID: 33435585 PMCID: PMC7827588 DOI: 10.3390/biom11010077] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 01/03/2021] [Accepted: 01/06/2021] [Indexed: 02/06/2023] Open
Abstract
Developmental and environmental signaling networks often converge during plant growth in response to changing conditions. Stress-induced hormones, such as jasmonates (JAs), can influence growth by crosstalk with other signals like brassinosteroids (BRs) and ethylene (ET). Nevertheless, it is unclear how avoidance of an abiotic stress triggers local changes in development as a response. It is known that stress hormones like JAs/ET and BRs can regulate the division rate of cells from the first asymmetric cell divisions (ACDs) in meristems, suggesting that stem cell activation may take part in developmental changes as a stress-avoidance-induced response. The root system is a prime responder to stress conditions in soil. Together with the primary root and lateral roots (LRs), adventitious roots (ARs) are necessary for survival in numerous plant species. AR and LR formation is affected by soil pollution, causing substantial root architecture changes by either depressing or enhancing rooting as a stress avoidance/survival response. Here, a detailed overview of the crosstalk between JAs, ET, BRs, and the stress mediator nitric oxide (NO) in auxin-induced AR and LR formation, with/without cadmium and arsenic, is presented. Interactions essential in achieving a balance between growth and adaptation to Cd and As soil pollution to ensure survival are reviewed here in the model species Arabidopsis and rice.
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Affiliation(s)
- Camilla Betti
- Department of Medicine, University of Perugia, Piazzale Menghini 8/9, 06132 Perugia, Italy
- Correspondence: ; Tel.: +39-075-5782402
| | - Federica Della Rovere
- Department of Environmental Biology, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (F.D.R.); (D.P.); (L.F.); (G.F.); (M.M.A.)
| | - Diego Piacentini
- Department of Environmental Biology, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (F.D.R.); (D.P.); (L.F.); (G.F.); (M.M.A.)
| | - Laura Fattorini
- Department of Environmental Biology, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (F.D.R.); (D.P.); (L.F.); (G.F.); (M.M.A.)
| | - Giuseppina Falasca
- Department of Environmental Biology, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (F.D.R.); (D.P.); (L.F.); (G.F.); (M.M.A.)
| | - Maria Maddalena Altamura
- Department of Environmental Biology, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Rome, Italy; (F.D.R.); (D.P.); (L.F.); (G.F.); (M.M.A.)
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10
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Xu P, Zhao PX, Cai XT, Mao JL, Miao ZQ, Xiang CB. Integration of Jasmonic Acid and Ethylene Into Auxin Signaling in Root Development. FRONTIERS IN PLANT SCIENCE 2020; 11:271. [PMID: 32211015 PMCID: PMC7076161 DOI: 10.3389/fpls.2020.00271] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Accepted: 02/20/2020] [Indexed: 05/12/2023]
Abstract
As sessile organisms, plants must be highly adaptable to the changing environment by modifying their growth and development. Plants rely on their underground part, the root system, to absorb water and nutrients and to anchor to the ground. The root is a highly dynamic organ of indeterminate growth with new tissues produced by root stem cells. Plants have evolved unique molecular mechanisms to fine-tune root developmental processes, during which phytohormones play vital roles. These hormones often relay environmental signals to auxin signaling that ultimately directs root development programs. Therefore, the crosstalk among hormones is critical in the root development. In this review, we will focus on the recent progresses that jasmonic acid (JA) and ethylene signaling are integrated into auxin in regulating root development of Arabidopsis thaliana and discuss the key roles of transcription factors (TFs) ethylene response factors (ERFs) and homeobox proteins in the crosstalk.
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Affiliation(s)
- Ping Xu
- Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou, China
- *Correspondence: Ping Xu,
| | - Ping-Xia Zhao
- School of Life Sciences and Division of Molecular and Cell Biophysics, Hefei National Science Center for Physical Sciences at the Microscale, University of Science and Technology of China, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Hefei, China
| | - Xiao-Teng Cai
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing University of Agriculture, Beijing, China
| | - Jie-Li Mao
- School of Life Sciences and Division of Molecular and Cell Biophysics, Hefei National Science Center for Physical Sciences at the Microscale, University of Science and Technology of China, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Hefei, China
| | - Zi-Qing Miao
- School of Life Sciences and Division of Molecular and Cell Biophysics, Hefei National Science Center for Physical Sciences at the Microscale, University of Science and Technology of China, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Hefei, China
| | - Cheng-Bin Xiang
- School of Life Sciences and Division of Molecular and Cell Biophysics, Hefei National Science Center for Physical Sciences at the Microscale, University of Science and Technology of China, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Hefei, China
- Cheng-Bin Xiang,
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11
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Zhang H, Ma X, Li W, Niu D, Wang Z, Yan X, Yang X, Yang Y, Cui H. Genome-wide characterization of NtHD-ZIP IV: different roles in abiotic stress response and glandular Trichome induction. BMC PLANT BIOLOGY 2019; 19:444. [PMID: 31651252 PMCID: PMC6814048 DOI: 10.1186/s12870-019-2023-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 09/10/2019] [Indexed: 05/12/2023]
Abstract
BACKGROUND The plant-specific homeodomain-leucine zipper class IV (HD-ZIP IV) gene family has been involved in the regulation of epidermal development. RESULTS Fifteen genes coding for HD-ZIP IV proteins were identified (NtHD-ZIP-IV-1 to NtHD-ZIP-IV-15) based on the genome of N. tabacum. Four major domains (HD, ZIP, SAD and START) were present in these proteins. Tissue expression pattern analysis indicated that NtHD-ZIP-IV-1, - 2, - 3, - 10, and - 12 may be associated with trichome development; NtHD-ZIP-IV-8 was expressed only in cotyledons; NtHD-ZIP-IV-9 only in the leaf and stem epidermis; NtHD-ZIP-IV-11 only in leaves; and NtHD-ZIP-IV-15 only in the root and stem epidermis. We found that jasmonates may induce the generation of glandular trichomes, and that NtHD-ZIP-IV-1, - 2, - 5, and - 7 were response to MeJA treatment. Dynamic expression under abiotic stress and after application of phytohormones indicated that most NtHD-ZIP IV genes were induced by heat, cold, salt and drought. Furthermore, most of these genes were induced by gibberellic acid, 6-benzylaminopurine, and salicylic acid, but were inhibited by abscisic acid. NtHD-ZIP IV genes were sensitive to heat, but insensitive to osmotic stress. CONCLUSION NtHD-ZIP IV genes are implicated in a complex regulatory gene network controlling epidermal development and abiotic stress responses. The present study provides evidence to elucidate the gene functions of NtHD-ZIP IVs during epidermal development and stress response.
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Affiliation(s)
- Hongying Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002 China
| | - Xudong Ma
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002 China
| | - Wenjiao Li
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002 China
| | - Dexin Niu
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002 China
| | - Zhaojun Wang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002 China
| | - Xiaoxiao Yan
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002 China
| | - Xinling Yang
- Technology Center, China Tobacco Henan Industrial Co., Ltd, Zhengzhou, 450000 China
| | - Yongfeng Yang
- Technology Center, China Tobacco Henan Industrial Co., Ltd, Zhengzhou, 450000 China
| | - Hong Cui
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002 China
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12
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Tan W, Zhang D, Zhou H, Zheng T, Yin Y, Lin H. Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought. PLoS Genet 2018; 14:e1007336. [PMID: 29659577 PMCID: PMC5919683 DOI: 10.1371/journal.pgen.1007336] [Citation(s) in RCA: 60] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2017] [Revised: 04/26/2018] [Accepted: 03/27/2018] [Indexed: 11/19/2022] Open
Abstract
Drought is a major threat to plant growth and crop productivity. The phytohormone abscisic acid (ABA) plays a critical role in plant response to drought stress. Although ABA signaling-mediated drought tolerance has been widely investigated in Arabidopsis thaliana, the feedback mechanism and components negatively regulating this pathway are less well understood. Here we identified a member of Arabidopsis HD-ZIP transcription factors HAT1 which can interacts with and be phosphorylated by SnRK2s. hat1hat3, loss-of-function mutant of HAT1 and its homolog HAT3, was hypersensitive to ABA in primary root inhibition, ABA-responsive genes expression, and displayed enhanced drought tolerance, whereas HAT1 overexpressing lines were hyposensitive to ABA and less tolerant to drought stress, suggesting that HAT1 functions as a negative regulator in ABA signaling-mediated drought response. Furthermore, expression levels of ABA biosynthesis genes ABA3 and NCED3 were repressed by HAT1 directly binding to their promoters, resulting in the ABA level was increased in hat1hat3 and reduced in HAT1OX lines. Further evidence showed that both protein stability and binding activity of HAT1 was repressed by SnRK2.3 phosphorylation. Overexpressing SnRK2.3 in HAT1OX transgenic plant made a reduced HAT1 protein level and suppressed the HAT1OX phenotypes in ABA and drought response. Our results thus establish a new negative regulation mechanism of HAT1 which helps plants fine-tune their drought responses.
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Affiliation(s)
- Wenrong Tan
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan, P.R. China
| | - Dawei Zhang
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan, P.R. China
- * E-mail: (DZ); (HL)
| | - Huapeng Zhou
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan, P.R. China
| | - Ting Zheng
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan, P.R. China
| | - Yanhai Yin
- Department of Genetics, Development, and Cell Biology, Iowa State University, Ames, IA, United States of America
| | - Honghui Lin
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan, P.R. China
- * E-mail: (DZ); (HL)
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13
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Banavath JN, Chakradhar T, Pandit V, Konduru S, Guduru KK, Akila CS, Podha S, Puli COR. Stress Inducible Overexpression of AtHDG11 Leads to Improved Drought and Salt Stress Tolerance in Peanut ( Arachis hypogaea L.). Front Chem 2018; 6:34. [PMID: 29552555 PMCID: PMC5840212 DOI: 10.3389/fchem.2018.00034] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Accepted: 02/12/2018] [Indexed: 12/25/2022] Open
Abstract
Peanut is an important oilseed and food legume cultivated as a rain-fed crop in semi-arid tropics. Drought and high salinity are the major abiotic stresses limiting the peanut productivity in this region. Development of drought and salt tolerant peanut varieties with improved yield potential using biotechnological approach is highly desirable to improve the peanut productivity in marginal geographies. As abiotic stress tolerance and yield represent complex traits, engineering of regulatory genes to produce abiotic stress-resilient transgenic crops appears to be a viable approach. In the present study, we developed transgenic peanut plants expressing an Arabidopsis homeodomain-leucine zipper transcription factor (AtHDG11) under stress inducible rd29A promoter. A stress-inducible expression of AtHDG11 in three independent homozygous transgenic peanut lines resulted in improved drought and salt tolerance through up-regulation of known stress responsive genes (LEA, HSP70, Cu/Zn SOD, APX, P5CS, NCED1, RRS5, ERF1, NAC4, MIPS, Aquaporin, TIP, ELIP) in the stress gene network, antioxidative enzymes, free proline along with improved water use efficiency traits such as longer root system, reduced stomatal density, higher chlorophyll content, increased specific leaf area, improved photosynthetic rates, and increased intrinsic instantaneous WUE. Transgenic peanut plants displayed high yield compared to non-transgenic plants under both drought and salt stress conditions. Holistically, our study demonstrates the potentiality of stress-induced expression of AtHDG11 to improve the drought, salt tolerance in peanut.
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Affiliation(s)
- Jayanna N. Banavath
- Plant Molecular Biology Laboratory, Department of Botany, Yogi Vemana University, Kadapa, India
| | | | - Varakumar Pandit
- Plant Molecular Biology Laboratory, Department of Botany, Yogi Vemana University, Kadapa, India
| | - Sravani Konduru
- Plant Molecular Biology Laboratory, Department of Botany, Yogi Vemana University, Kadapa, India
| | - Krishna K. Guduru
- Plant Molecular Biology Laboratory, Department of Botany, Yogi Vemana University, Kadapa, India
| | - Chandra S. Akila
- Molecular Genetics and Functional Genomics Laboratory, Department of Biotechnology, Yogi Vemana University, Kadapa, India
| | - Sudhakar Podha
- Department of Biotechnology, Acharya Nagarjuna University, Guntur, India
| | - Chandra O. R. Puli
- Plant Molecular Biology Laboratory, Department of Botany, Yogi Vemana University, Kadapa, India
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14
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Zheng G, Fan C, Di S, Wang X, Xiang C, Pang Y. Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa ( Medicago sativa L.). FRONTIERS IN PLANT SCIENCE 2017; 8:2125. [PMID: 29326737 PMCID: PMC5733502 DOI: 10.3389/fpls.2017.02125] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2017] [Accepted: 11/29/2017] [Indexed: 05/18/2023]
Abstract
Alfalfa (Medicago sativa L.) is an important legume forage crop with great economic value. However, as the growth of alfalfa is seriously affected by an inadequate supply of water, drought is probably the major abiotic environmental factor that most severely affects alfalfa production worldwide. In an effort to enhance alfalfa drought tolerance, we transformed the Arabidopsis Enhanced Drought Tolerance 1 (AtEDT1) gene into alfalfa via Agrobacterium-mediated transformation. Compared with wild type plants, drought stress treatment resulted in higher survival rates and biomass, but reduced water loss rates in the transgenic plants. Furthermore, transgenic alfalfa plants had increased stomatal size, but reduced stomatal density, and these stomatal changes contributed greatly to reduced water loss from leaves. Importantly, transgenic alfalfa plants exhibited larger root systems with larger root lengths, root weight, and root diameters than wild type plants. The transgenic alfalfa plants had reduced membrane permeability and malondialdehyde content, but higher soluble sugar and proline content, higher superoxide dismutase activity, higher chlorophyll content, enhanced expression of drought-responsive genes, as compared with wild type plants. Notably, transgenic alfalfa plants grew better in a 2-year field trial and showed enhanced growth performance with increased biomass yield. All of our morphological, physiological, and molecular analyses demonstrated that the ectopic expression of AtEDT1 improved growth and enhanced drought tolerance in alfalfa. Our study provides alfalfa germplasm for use in forage improvement programs, and may help to increase alfalfa production in arid lands.
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Affiliation(s)
- Guangshun Zheng
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Cunying Fan
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Shaokang Di
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing, China
| | - Xuemin Wang
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Chengbin Xiang
- School of Life Sciences, University of Science and Technology of China, Hefei, China
| | - Yongzhen Pang
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing, China
- Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, China
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15
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Liu Y, Sun G, Zhong Z, Ji L, Zhang Y, Zhou J, Zheng X, Deng K. Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza. PROTOPLASMA 2017; 254:1617-1625. [PMID: 27915455 DOI: 10.1007/s00709-016-1045-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Accepted: 11/07/2016] [Indexed: 05/13/2023]
Abstract
Medicinal secondary metabolites (salvianolic acids and tanshinones) are valuable natural bioactive compounds in Salvia miltiorrhiza and have widespread applications. Improvement of medicinal secondary metabolite accumulation through biotechnology is necessary and urgent to satisfy their increasing demand. Herein, it was demonstrated that the overexpression of the transcription factor Arabidopsis thaliana-enhanced drought tolerance 1 (AtEDT1) could affect medicinal secondary metabolite accumulation. In this study, we observed that the transgenic lines significantly conferred drought tolerance phenotype. Meanwhile, we found that the overexpression of AtEDT1 promoted root elongation in S. miltiorrhiza. Interestingly, we also found that the overexpression of AtEDT1 determined the accumulation of salvianolic acids, such as rosmarinic acid, lithospermic acid, salvianolic acid B, and total salvianolic acids due to the induction of the expression levels of salvianolic acid biosynthetic genes. Conversely, S. miltiorrhiza plants overexpressing the AtEDT1 transgene showed a decrease in tanshinone synthesis. Our results demonstrated that the overexpression of AtEDT1 significantly increased the accumulation of salvianolic acids in S. miltiorrhiza. Further studies are required to better elucidate the functional role of AtEDT1 in the regulation of phytochemical compound synthesis.
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Affiliation(s)
- Yu Liu
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Geng Sun
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Zhaohui Zhong
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Linyi Ji
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Yong Zhang
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Jianping Zhou
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Xuelian Zheng
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China.
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China.
| | - Kejun Deng
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China.
- Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, 610054, China.
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16
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Zhu Z, Sun B, Xu X, Chen H, Zou L, Chen G, Cao B, Chen C, Lei J. Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance. FRONTIERS IN PLANT SCIENCE 2016; 7:1285. [PMID: 27625663 PMCID: PMC5003845 DOI: 10.3389/fpls.2016.01285] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2016] [Accepted: 08/11/2016] [Indexed: 05/09/2023]
Abstract
Plants are constantly challenged by environmental stresses, including drought and high salinity. Improvement of drought and osmotic stress tolerance without yield decrease has been a great challenge in crop improvement. The Arabidopsis ENHANCED DROUGHT TOLERANCE1/HOMEODOMAIN GLABROUS11 (AtEDT1/HDG11), a protein of the class IV HD-Zip family, has been demonstrated to significantly improve drought tolerance in Arabidopsis, rice, and pepper. Here, we report that AtEDT1/HDG11 confers drought and osmotic stress tolerance in the Chinese kale. AtEDT1/HDG11-overexpression lines exhibit auxin-overproduction phenotypes, such as long hypocotyls, tall stems, more root hairs, and a larger root system architecture. Compared with the untransformed control, transgenic lines have significantly reduced stomatal density. In the leaves of transgenic Chinese kale plants, proline (Pro) content and reactive oxygen species-scavenging enzyme activity was significantly increased after drought and osmotic stress, particularly compared to wild kale. More importantly, AtEDT1/HDG11-overexpression leads to abscisic acid (ABA) hypersensitivity, resulting in ABA inhibitor germination and induced stomatal closure. Consistent with observed phenotypes, the expression levels of auxin, ABA, and stress-related genes were also altered under both normal and/or stress conditions. Further analysis showed that AtEDT1/HDG11, as a transcription factor, can target the auxin biosynthesis gene YUCC6 and ABA response genes ABI3 and ABI5. Collectively, our results provide a new insight into the role of AtEDT1/HDG11 in enhancing abiotic stress resistance through auxin- and ABA-mediated signaling response in Chinese kale.
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Affiliation(s)
- Zhangsheng Zhu
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
| | - Binmei Sun
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
| | - Xiaoxia Xu
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
| | - Hao Chen
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
| | - Lifang Zou
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
| | - Guoju Chen
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
| | - Bihao Cao
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
| | - Changming Chen
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
- *Correspondence: Jianjun Lei, Changming Chen,
| | - Jianjun Lei
- College of Horticulture, South China Agricultural UniversityGuangzhou, China
- National Engineering Research Center of Plant Space Breeding, South China Agricultural UniversityGuangzhou, China
- Key Laboratory of Biology, Innovation and Utilization for Germplasm Resources in Horticultural Crops in Southern China, College of Horticulture, South China Agricultural UniversityGuangzhou, China
- *Correspondence: Jianjun Lei, Changming Chen,
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17
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Pandey A, Misra P, Alok A, Kaur N, Sharma S, Lakhwani D, Asif MH, Tiwari S, Trivedi PK. Genome-Wide Identification and Expression Analysis of Homeodomain Leucine Zipper Subfamily IV (HDZ IV) Gene Family from Musa accuminata. FRONTIERS IN PLANT SCIENCE 2016; 7:20. [PMID: 26870050 PMCID: PMC4740955 DOI: 10.3389/fpls.2016.00020] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2015] [Accepted: 01/08/2016] [Indexed: 05/12/2023]
Abstract
The homeodomain zipper family (HD-ZIP) of transcription factors is present only in plants and plays important role in the regulation of plant-specific processes. The subfamily IV of HDZ transcription factors (HD-ZIP IV) has primarily been implicated in the regulation of epidermal structure development. Though this gene family is present in all lineages of land plants, members of this gene family have not been identified in banana, which is one of the major staple fruit crops. In the present work, we identified 21 HDZIV encoding genes in banana by the computational analysis of banana genome resource. Our analysis suggested that these genes putatively encode proteins having all the characteristic domains of HDZIV transcription factors. The phylogenetic analysis of the banana HDZIV family genes further confirmed that after separation from a common ancestor, the banana, and poales lineages might have followed distinct evolutionary paths. Further, we conclude that segmental duplication played a major role in the evolution of banana HDZIV encoding genes. All the identified banana HDZIV genes expresses in different banana tissue, however at varying levels. The transcript levels of some of the banana HDZIV genes were also detected in banana fruit pulp, suggesting their putative role in fruit attributes. A large number of genes of this family showed modulated expression under drought and salinity stress. Taken together, the present work lays a foundation for elucidation of functional aspects of the banana HDZIV encoding genes and for their possible use in the banana improvement programs.
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Affiliation(s)
- Ashutosh Pandey
- Department of Biotechnology, National Agri-Food Biotechnology InstituteMohali, India
- *Correspondence: Ashutosh Pandey
| | - Prashant Misra
- CSIR-National Botanical Research InstituteLucknow, India
| | - Anshu Alok
- Department of Biotechnology, National Agri-Food Biotechnology InstituteMohali, India
| | - Navneet Kaur
- Department of Biotechnology, National Agri-Food Biotechnology InstituteMohali, India
| | - Shivani Sharma
- Department of Biotechnology, National Agri-Food Biotechnology InstituteMohali, India
| | | | - Mehar H. Asif
- CSIR-National Botanical Research InstituteLucknow, India
| | - Siddharth Tiwari
- Department of Biotechnology, National Agri-Food Biotechnology InstituteMohali, India
| | - Prabodh K. Trivedi
- CSIR-National Botanical Research InstituteLucknow, India
- Prabodh K. Trivedi ;
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