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Chialva M, Stelluti S, Novero M, Masson S, Bonfante P, Lanfranco L. Genetic and functional traits limit the success of colonisation by arbuscular mycorrhizal fungi in a tomato wild relative. PLANT, CELL & ENVIRONMENT 2024; 47:4275-4292. [PMID: 38953693 DOI: 10.1111/pce.15007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 05/29/2024] [Accepted: 06/06/2024] [Indexed: 07/04/2024]
Abstract
To understand whether domestication had an impact on susceptibility and responsiveness to arbuscular mycorrhizal fungi (AMF) in tomato (Solanum lycopersicum), we investigated two tomato cultivars ("M82" and "Moneymaker") and a panel of wild relatives including S. neorickii, S. habrochaites and S. pennellii encompassing the whole Lycopersicon clade. Most genotypes revealed good AM colonisation levels when inoculated with the AMF Funneliformis mosseae. By contrast, both S. pennellii accessions analysed showed a very low colonisation, but with normal arbuscule morphology, and a negative response in terms of root and shoot biomass. This behaviour was independent of fungal identity and environmental conditions. Genomic and transcriptomic analyses revealed in S. pennellii the lack of genes identified within QTLs for AM colonisation, a limited transcriptional reprogramming upon mycorrhization and a differential regulation of strigolactones and AM-related genes compared to tomato. Donor plants experiments indicated that the AMF could represent a cost for S. pennellii: F. mosseae could extensively colonise the root only when it was part of a mycorrhizal network, but a higher mycorrhization led to a higher inhibition of plant growth. These results suggest that genetics and functional traits of S. pennellii are responsible for the limited extent of AMF colonisation.
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Affiliation(s)
- Matteo Chialva
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
| | - Stefania Stelluti
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
| | - Mara Novero
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
| | - Simon Masson
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
| | - Paola Bonfante
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
| | - Luisa Lanfranco
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
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2
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Maffei ME, Balestrini R, Costantino P, Lanfranco L, Morgante M, Battistelli A, Del Bianco M. The physiology of plants in the context of space exploration. Commun Biol 2024; 7:1311. [PMID: 39394270 DOI: 10.1038/s42003-024-06989-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 09/30/2024] [Indexed: 10/13/2024] Open
Abstract
The stress that the space environment can induce on plant physiology is of both abiotic and biotic nature. The abiotic space environment is characterized by ionizing radiation and altered gravity, geomagnetic field (GMF), pressure, and light conditions. Biotic interactions include both pathogenic and beneficial interactions. Here, we provide an overall picture of the effects of abiotic and biotic space-related factors on plant physiology. The knowledge required for the success of future space missions will lead to a better understanding of fundamental aspects of plant physiological responses, thus providing useful tools for plant breeding and agricultural practices on Earth.
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Affiliation(s)
- Massimo E Maffei
- Department of Life Sciences and Systems Biology, Plant Physiology Unit, University of Turin, Via Quarello 15/a, 10135, Turin, Italy
| | - Raffaella Balestrini
- Institute of Biosciences and Bioresources, Via Amendola 165/A, 70126, Bari, Italy
| | - Paolo Costantino
- Department of Biology and Biotechnology "C. Darwin", University of Rome "Sapienza", Piazzale Aldo Moro 5, 00185, Rome, Italy
| | - Luisa Lanfranco
- Department of Life Sciences and Systems Biology, University of Turin, Viale Mattioli 25, 10125, Turin, Italy
| | - Michele Morgante
- Institute of Applied Genomics, University of Udine, Via Jacopo Linussio 51, 33100, Udine, Italy
| | - Alberto Battistelli
- Research Institute on Terrestrial Ecosystems (IRET), National Research Council, Viale Guglielmo Marconi 2, 05010, Porano, Italy
| | - Marta Del Bianco
- Italian Space Agency, Viale del Politecnico s.n.c., 00133, Rome, Italy.
- Centre for Space Life Sciences, Viale Regina Elena, 299, 00161, Roma, Italy.
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3
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Yadav R, Ramakrishna W. MicroRNAs Involved in Nutritional Regulation During Plant-Microbe Symbiotic and Pathogenic Interactions with Rice as a Model. Mol Biotechnol 2024; 66:1754-1771. [PMID: 37468736 DOI: 10.1007/s12033-023-00822-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 07/04/2023] [Indexed: 07/21/2023]
Abstract
Plants are constantly challenged with numerous adverse environmental conditions, including biotic and abiotic stresses. Coordinated regulation of plant responses requires crosstalk between regulatory pathways initiated by different external cues. Stress induced by excessiveness or deficiency of nutrients has been shown to positively or negatively interact with pathogen-induced immune responses. Also, colonization by arbuscular mycorrhizal (AM) fungi can improve plant nutrition, mainly phosphorus and resistance to pathogen infection. The proposed review addresses these issues about a new question that integrates adaptation to nutrient stress and disease resistance. The main goal of the current review is to provide insights into the interconnected regulation between nutrient signaling and immune signaling pathways in rice, focusing on phosphate, potassium and iron signaling. The underpinnings of plant/pathogen/AM fungus interaction concerning rice/M. oryzae/R. irregularis is highlighted. The role of microRNAs (miRNAs) involved in Pi (miR399, miR827) and Fe (miR7695) homeostasis in pathogenic/symbiotic interactions in rice is discussed. The intracellular dynamics of membrane proteins that function in nutrient transport transgenic rice lines expressing fluorescent protein fusion genes are outlined. Integrating functional genomic, nutritional and metal content, molecular and cell biology approaches to understand how disease resistance is regulated by nutrient status leading to novel concepts in fundamental processes underlying plant disease resistance will help to devise novel strategies for crop protection with less input of pesticides and fertilizers.
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Affiliation(s)
- Radheshyam Yadav
- Department of Biochemistry, Central University of Punjab, VPO Ghudda, Bathinda, Punjab, India
| | - Wusirika Ramakrishna
- Department of Biochemistry, Central University of Punjab, VPO Ghudda, Bathinda, Punjab, India.
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4
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Wang JY, Chen GTE, Braguy J, Al-Babili S. Distinguishing the functions of canonical strigolactones as rhizospheric signals. TRENDS IN PLANT SCIENCE 2024; 29:925-936. [PMID: 38521698 DOI: 10.1016/j.tplants.2024.02.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 02/12/2024] [Accepted: 02/29/2024] [Indexed: 03/25/2024]
Abstract
Strigolactones (SLs) act as regulators of plant architecture as well as signals in rhizospheric communications. Reduced availability of minerals, particularly phosphorus, leads to an increase in the formation and release of SLs that enable adaptation of root and shoot architecture to nutrient limitation and, simultaneously, attract arbuscular mycorrhizal fungi (AMF) for establishing beneficial symbiosis. Based on their chemical structure, SLs are designated as either canonical or non-canonical; however, the question of whether the two classes are also distinguished in their biological functions remained largely elusive until recently. In this review we summarize the latest advances in SL biosynthesis and highlight new findings pointing to rhizospheric signaling as the major function of canonical SLs.
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Affiliation(s)
- Jian You Wang
- The BioActives Lab, Center for Desert Agriculture, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia
| | - Guan-Ting Erica Chen
- The BioActives Lab, Center for Desert Agriculture, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia; The Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia
| | - Justine Braguy
- The BioActives Lab, Center for Desert Agriculture, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia; The Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia
| | - Salim Al-Babili
- The BioActives Lab, Center for Desert Agriculture, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia; The Plant Science Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia.
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5
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Charakas C, Khokhani D. Expanded trade: tripartite interactions in the mycorrhizosphere. mSystems 2024; 9:e0135223. [PMID: 38837330 PMCID: PMC11265408 DOI: 10.1128/msystems.01352-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024] Open
Abstract
Interactions between arbuscular mycorrhizal fungi (AMF), plants, and the soil microbial community have the potential to increase the availability and uptake of phosphorus (P) and nitrogen (N) in agricultural systems. Nutrient exchange between plant roots, AMF, and the adjacent soil microbes occurs at the interface between roots colonized by mycorrhizal fungi and soil, referred to as the mycorrhizosphere. Research on the P exchange focuses on plant-AMF or AMF-microbe interactions, lacking a holistic view of P exchange between the plants, AMF, and other microbes. Recently, N exchange at both interfaces revealed the synergistic role of AMF and bacterial community in N uptake by the host plant. Here, we highlight work carried out on each interface and build upon it by emphasizing research involving all members of the tripartite network. Both nutrient systems are challenging to study due to the complex chemical and biological nature of the mycorrhizosphere. We discuss some of the effective methods to identify important nutrient processes and the tripartite members involved in these processes. The extrapolation of in vitro studies into the field is often fraught with contradiction and noise. Therefore, we also suggest some approaches that can potentially bridge the gap between laboratory-generated data and their extrapolation to the field, improving the applicability and contextual relevance of data within the field of mycorrhizosphere interactions. Overall, we argue that the research community needs to adopt a holistic tripartite approach and that we have the means to increase the applicability and accuracy of in vitro data in the field.
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Affiliation(s)
- Christos Charakas
- Department of Plant and Microbial Biology, University of Minnesota, Twin Cities, Minnesota, USA
| | - Devanshi Khokhani
- Department of Plant Pathology, University of Minnesota, Twin Cities, Minnesota, USA
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Tang B, Man J, Romero F, Bergmann J, Lehmann A, Rillig MC. Mycorrhization enhances plant growth and stabilizes biomass allocation under drought. GLOBAL CHANGE BIOLOGY 2024; 30:e17438. [PMID: 39054882 DOI: 10.1111/gcb.17438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 06/21/2024] [Accepted: 07/03/2024] [Indexed: 07/27/2024]
Abstract
Plants and their symbionts, such as arbuscular mycorrhizal (AM) fungi, are increasingly subjected to various environmental stressors due to climate change, including drought. As a response to drought, plants generally allocate more biomass to roots over shoots, thereby facilitating water uptake. However, whether this biomass allocation shift is modulated by AM fungi remains unknown. Based on 5691 paired observations from 154 plant species, we conducted a meta-analysis to evaluate how AM fungi modulate the responses of plant growth and biomass allocation (e.g., root-to-shoot ratio, R/S) to drought. We found that AM fungi attenuate the negative impact of drought on plant growth, including biomass production, photosynthetic performance and resource (e.g. nutrient and water) uptake. Accordingly, drought significantly increased R/S in non-inoculated plants, but not in plants symbiotic with established AM fungal symbioses. These results suggest that AM fungi promote plant growth and stabilize their R/S through facilitating nutrient and water uptake in plants under drought. Our findings highlight the crucial role of AM fungi in enhancing plant resilience to drought by optimizing resource allocation. This knowledge opens avenues for sustainable agricultural practices that leverage symbiotic relationships for climate adaptation.
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Affiliation(s)
- Bo Tang
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Jing Man
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Ferran Romero
- Plant-Soil Interactions Group, Agroscope, Zurich, Switzerland
| | - Joana Bergmann
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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Giovannetti M, Genre A. Walking on a tightrope: cell wall-associated kinases act as sensors and regulators of immunity and symbiosis. THE NEW PHYTOLOGIST 2024; 242:1851-1853. [PMID: 38415795 DOI: 10.1111/nph.19634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
Abstract
This article is a Commentary on Zhang et al. (2024), 242: 2180–2194.
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Affiliation(s)
- Marco Giovannetti
- Department of Life Sciences and Systems Biology, University of Turin, 10125, Turin, Italy
| | - Andrea Genre
- Department of Life Sciences and Systems Biology, University of Turin, 10125, Turin, Italy
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Hassan S, Bhadwal SS, Khan M, Sabreena, Nissa KU, Shah RA, Bhat HM, Bhat SA, Lone IM, Ganai BA. Revitalizing contaminated lands: A state-of-the-art review on the remediation of mine-tailings using phytoremediation and genomic approaches. CHEMOSPHERE 2024; 356:141889. [PMID: 38583533 DOI: 10.1016/j.chemosphere.2024.141889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 03/27/2024] [Accepted: 04/01/2024] [Indexed: 04/09/2024]
Abstract
The mining industry has historically served as a critical reservoir of essential raw materials driving global economic progress. Nevertheless, the consequential by-product known as mine tailings has consistently produced a substantial footprint of environmental contamination. With annual discharges of mine tailings surpassing 10 billion tons globally, the need for effective remediation strategies is more pressing than ever as traditional physical and chemical remediation techniques are hindered by their high costs and limited efficacy. Phytoremediation utilizing plants for remediation of polluted soil has developed as a promising and eco-friendly approach to addressing mine tailings contamination. Furthermore, sequencing of genomic DNA and transcribed RNA extracted from mine tailings presents a pivotal opportunity to provide critical supporting insights for activities directed towards the reconstruction of ecosystem functions on contaminated lands. This review explores the growing prominence of phytoremediation and metagenomics as an ecologically sustainable techniques for rehabilitating mine-tailings. The present study envisages that plant species such as Solidago chilensis, Festuca arundinacea, Lolium perenne, Polygonum capitatum, Pennisetum purpureum, Maireana brevifolia, Prosopis tamarugo etc. could be utilized for the remediation of mine-tailings. Furthermore, a critical evaluation of the organic and inorganic ammendments that optimize conditions for the remediation of mine tailings is also provided. The focus of this review extends to the exploration of environmental genomics to characterize microbial communities in mining sites. By delving into the multifaceted dimensions of phytoremediation and genomics for mine tailings, this study contributes to the ongoing efforts to revitalize contaminated lands for a sustainable and environmentally friendly future.
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Affiliation(s)
- Shahnawaz Hassan
- Department of Environmental Science, University of Kashmir, Srinagar, 190006, India.
| | - Siloni Singh Bhadwal
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143005, India
| | - Misba Khan
- Centre of Research for Development, University of Kashmir, Srinagar, 190006, India
| | - Sabreena
- Department of Environmental Science, University of Kashmir, Srinagar, 190006, India
| | - Khair-Ul Nissa
- Department of Environmental Science, University of Kashmir, Srinagar, 190006, India
| | - Rameez Ahmad Shah
- Department of Environmental Science, University of Kashmir, Srinagar, 190006, India
| | - Haneef Mohammad Bhat
- Centre of Research for Development, University of Kashmir, Srinagar, 190006, India
| | - Shabir Ahmad Bhat
- Centre of Research for Development, University of Kashmir, Srinagar, 190006, India
| | - Ishfaq Maqbool Lone
- Centre of Research for Development, University of Kashmir, Srinagar, 190006, India
| | - Bashir Ahmad Ganai
- Centre of Research for Development, University of Kashmir, Srinagar, 190006, India.
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Voller F, Ardanuy A, Taylor AFS, Johnson D. Maintenance of host specialisation gradients in ectomycorrhizal symbionts. THE NEW PHYTOLOGIST 2024; 242:1426-1435. [PMID: 37984824 DOI: 10.1111/nph.19395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Accepted: 10/02/2023] [Indexed: 11/22/2023]
Abstract
Many fungi that form ectomycorrhizas exhibit a degree of host specialisation, and individual trees are frequently colonised by communities of mycorrhizal fungi comprising species that fall on a gradient of specialisation along genetic, functional and taxonomic axes of variation. By contrast, arbuscular mycorrhizal fungi exhibit little specialisation. Here, we propose that host tree root morphology is a key factor that gives host plants fine-scale control over colonisation and therefore opportunities for driving specialisation and speciation of ectomycorrhizal fungi. A gradient in host specialisation is likely driven by four proximate mechanistic 'filters' comprising partner availability, signalling recognition, competition for colonisation, and symbiotic function (trade, rewards and sanctions), and the spatially restricted colonisation seen in heterorhizic roots enables these mechanisms, especially symbiotic function, to be more effective in driving the evolution of specialisation. We encourage manipulation experiments that integrate molecular genetics and isotope tracers to test these mechanisms, alongside mathematical simulations of eco-evolutionary dynamics in mycorrhizal symbioses.
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Affiliation(s)
- Fay Voller
- Department of Earth and Environmental Sciences, The University of Manchester, Michael Smith Building, Dover Street, Manchester, M13 9PT, UK
| | - Agnès Ardanuy
- Department of Earth and Environmental Sciences, The University of Manchester, Michael Smith Building, Dover Street, Manchester, M13 9PT, UK
- Université de Toulouse, INRAE, UMR DYNAFOR, Castanet-Tolosan, 31320, France
| | - Andy F S Taylor
- Ecological Sciences Group, James Hutton Institute, Craigiebuckler, Aberdeen, AB15 8QH, UK
| | - David Johnson
- Department of Earth and Environmental Sciences, The University of Manchester, Michael Smith Building, Dover Street, Manchester, M13 9PT, UK
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Shen K, He Y, Xia T, Guo Y, Wu B, Han X, Chen H, Zhao Y, Wu P, Liu Y. Arbuscular mycorrhizal fungi improve the competitive advantage of a native plant relative to a congeneric invasive plant in growth and nutrition. Ecol Evol 2024; 14:e11459. [PMID: 38774145 PMCID: PMC11106688 DOI: 10.1002/ece3.11459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 02/22/2024] [Accepted: 05/08/2024] [Indexed: 05/24/2024] Open
Abstract
Plant invasions severely threaten natural ecosystems, and invasive plants often outcompete native plants across various ecosystems. Arbuscular mycorrhizal (AM) fungi, serving as beneficial microorganisms for host plants, can greatly influence the competitive outcomes of invasive plants against native plants. However, it remains unclear how AM fungi alter the competitive balance between native and invasive species. A competitive experiment was conducted using an invasive Eupatorium adenophorum paired with a native congener Eupatorium lindleyanum. Specifically, both species were inoculated with (M+) or without (M-) the fungus Glomus etunicatum under intraspecific (Intra-) and interspecific (Inter-) competition. Plant traits were measured and analyzed regarding the growth and nutrition of both species. The results exhibited that the AM fungus significantly increased the height, diameter, biomass, C, N, and P acquisition of both the invasive E. adenophorum and the native E. lindleyanum. The root mycorrhizal colonization and the mycorrhizal dependency of native E. lindleyanum were greater than those of invasive E. adenophorum. Under M+, the Inter-competition inhibited the growth and nutrition of invasive E. adenophorum compared to the Intra- competition. Further, native E. lindleyanum exhibited higher competitiveness than invasive E. adenophorum in growth and nutrition. Meanwhile, the AM fungus significantly improved the competitiveness of native E. lindleyanum over invasive E. adenophorum. In conclusion, AM fungus improved the competitive advantage of native E. lindleyanum over invasive E. adenophorum in growth and nutrition, potentially contributing to native species competitively resisting the invasion of exotic species. These findings emphasize the importance of AM fungi in helping native plants resist the invasion of exotic plants and further contribute to understanding plant invasion prevention mechanisms.
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Affiliation(s)
- Kaiping Shen
- Forestry College, Research Center of Forest EcologyGuizhou UniversityGuiyangChina
| | - Yuejun He
- Forestry College, Research Center of Forest EcologyGuizhou UniversityGuiyangChina
| | - Tingting Xia
- Forestry College, Research Center of Forest EcologyGuizhou UniversityGuiyangChina
| | - Yun Guo
- Forestry College, Research Center of Forest EcologyGuizhou UniversityGuiyangChina
- College of Eco‐Environmental EngineeringGuizhou Minzu UniversityGuiyangChina
| | - Bangli Wu
- Forestry College, Research Center of Forest EcologyGuizhou UniversityGuiyangChina
| | - Xu Han
- Forestry College, Research Center of Forest EcologyGuizhou UniversityGuiyangChina
| | - Hongchun Chen
- College of Resources and Environmental EngineeringGuizhou UniversityGuiyangChina
- Guizhou Provincial Water Conservancy Research InstituteGuiyangChina
| | - Yan Zhao
- College of Resources and Environmental EngineeringGuizhou UniversityGuiyangChina
| | - Pan Wu
- College of Resources and Environmental EngineeringGuizhou UniversityGuiyangChina
| | - Yuan Liu
- College of Life ScienceGuizhou UniversityGuiyangChina
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Aparicio Chacón MV, Hernández Luelmo S, Devlieghere V, Robichez L, Leroy T, Stuer N, De Keyser A, Ceulemans E, Goossens A, Goormachtig S, Van Dingenen J. Exploring the potential role of four Rhizophagus irregularis nuclear effectors: opportunities and technical limitations. FRONTIERS IN PLANT SCIENCE 2024; 15:1384496. [PMID: 38736443 PMCID: PMC11085264 DOI: 10.3389/fpls.2024.1384496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 04/02/2024] [Indexed: 05/14/2024]
Abstract
Arbuscular mycorrhizal fungi (AMF) are obligate symbionts that interact with the roots of most land plants. The genome of the AMF model species Rhizophagus irregularis contains hundreds of predicted small effector proteins that are secreted extracellularly but also into the plant cells to suppress plant immunity and modify plant physiology to establish a niche for growth. Here, we investigated the role of four nuclear-localized putative effectors, i.e., GLOIN707, GLOIN781, GLOIN261, and RiSP749, in mycorrhization and plant growth. We initially intended to execute the functional studies in Solanum lycopersicum, a host plant of economic interest not previously used for AMF effector biology, but extended our studies to the model host Medicago truncatula as well as the non-host Arabidopsis thaliana because of the technical advantages of working with these models. Furthermore, for three effectors, the implementation of reverse genetic tools, yeast two-hybrid screening and whole-genome transcriptome analysis revealed potential host plant nuclear targets and the downstream triggered transcriptional responses. We identified and validated a host protein interactors participating in mycorrhization in the host.S. lycopersicum and demonstrated by transcriptomics the effectors possible involvement in different molecular processes, i.e., the regulation of DNA replication, methylglyoxal detoxification, and RNA splicing. We conclude that R. irregularis nuclear-localized effector proteins may act on different pathways to modulate symbiosis and plant physiology and discuss the pros and cons of the tools used.
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Affiliation(s)
- María Victoria Aparicio Chacón
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Sofía Hernández Luelmo
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Viktor Devlieghere
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Louis Robichez
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Toon Leroy
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Naomi Stuer
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Annick De Keyser
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Evi Ceulemans
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Alain Goossens
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Sofie Goormachtig
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
| | - Judith Van Dingenen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Center for Plant Systems Biology, VIB, Gent, Belgium
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Kong CH, Li Z, Li FL, Xia XX, Wang P. Chemically Mediated Plant-Plant Interactions: Allelopathy and Allelobiosis. PLANTS (BASEL, SWITZERLAND) 2024; 13:626. [PMID: 38475470 DOI: 10.3390/plants13050626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 02/20/2024] [Accepted: 02/22/2024] [Indexed: 03/14/2024]
Abstract
Plant-plant interactions are a central driver for plant coexistence and community assembly. Chemically mediated plant-plant interactions are represented by allelopathy and allelobiosis. Both allelopathy and allelobiosis are achieved through specialized metabolites (allelochemicals or signaling chemicals) produced and released from neighboring plants. Allelopathy exerts mostly negative effects on the establishment and growth of neighboring plants by allelochemicals, while allelobiosis provides plant neighbor detection and identity recognition mediated by signaling chemicals. Therefore, plants can chemically affect the performance of neighboring plants through the allelopathy and allelobiosis that frequently occur in plant-plant intra-specific and inter-specific interactions. Allelopathy and allelobiosis are two probably inseparable processes that occur together in plant-plant chemical interactions. Here, we comprehensively review allelopathy and allelobiosis in plant-plant interactions, including allelopathy and allelochemicals and their application for sustainable agriculture and forestry, allelobiosis and plant identity recognition, chemically mediated root-soil interactions and plant-soil feedback, and biosynthesis and the molecular mechanisms of allelochemicals and signaling chemicals. Altogether, these efforts provide the recent advancements in the wide field of allelopathy and allelobiosis, and new insights into the chemically mediated plant-plant interactions.
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Affiliation(s)
- Chui-Hua Kong
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Zheng Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Feng-Li Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Xin-Xin Xia
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Peng Wang
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China
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13
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Gómez-Gallego T, Molina-Luzón MJ, Conéjéro G, Berthomieu P, Ferrol N. The arbuscular mycorrhizal fungus Rhizophagus irregularis uses the copper exporting ATPase RiCRD1 as a major strategy for copper detoxification. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 341:122990. [PMID: 37992950 DOI: 10.1016/j.envpol.2023.122990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 11/10/2023] [Accepted: 11/16/2023] [Indexed: 11/24/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi establish a mutualistic symbiosis with most land plants. AM fungi regulate plant copper (Cu) acquisition both in Cu deficient and polluted soils. Here, we report characterization of RiCRD1, a Rhizophagus irregularis gene putatively encoding a Cu transporting ATPase. Based on its sequence analysis, RiCRD1 was identified as a plasma membrane Cu + efflux protein of the P1B1-ATPase subfamily. As revealed by heterologous complementation assays in yeast, RiCRD1 encodes a functional protein capable of conferring increased tolerance against Cu. In the extraradical mycelium, RiCRD1 expression was highly up-regulated in response to high concentrations of Cu in the medium. Comparison of the expression patterns of different players of metal tolerance in R. irregularis under high Cu levels suggests that this fungus could mainly use a metal efflux based-strategy to cope with Cu toxicity. RiCRD1 was also expressed in the intraradical fungal structures and, more specifically, in the arbuscules, which suggests a role for RiCRD1 in Cu release from the fungus to the symbiotic interface. Overall, our results show that RiCRD1 encodes a protein which could have a pivotal dual role in Cu homeostasis in R. irregularis, playing a role in Cu detoxification in the extraradical mycelium and in Cu transfer to the apoplast of the symbiotic interface in the arbuscules.
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Affiliation(s)
- Tamara Gómez-Gallego
- Soil and Plant Microbiology Department, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - María Jesús Molina-Luzón
- Soil and Plant Microbiology Department, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Genevieve Conéjéro
- Institut des Sciences des Plantes de Montpellier, Université de Montpellier, Centre National de la Recherche Scientifique, Institut Agro Montpellier, Institut National de Recherche pour l'Agriculture l'Alimentation et l'Environnement, Montpellier, France
| | - Pierre Berthomieu
- Institut des Sciences des Plantes de Montpellier, Université de Montpellier, Centre National de la Recherche Scientifique, Institut Agro Montpellier, Institut National de Recherche pour l'Agriculture l'Alimentation et l'Environnement, Montpellier, France
| | - Nuria Ferrol
- Soil and Plant Microbiology Department, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain.
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14
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Slimani A, Ait-El-Mokhtar M, Ben-Laouane R, Boutasknit A, Anli M, Abouraicha EF, Oufdou K, Meddich A, Baslam M. Molecular and Systems Biology Approaches for Harnessing the Symbiotic Interaction in Mycorrhizal Symbiosis for Grain and Oil Crop Cultivation. Int J Mol Sci 2024; 25:912. [PMID: 38255984 PMCID: PMC10815302 DOI: 10.3390/ijms25020912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/09/2024] [Accepted: 01/09/2024] [Indexed: 01/24/2024] Open
Abstract
Mycorrhizal symbiosis, the mutually beneficial association between plants and fungi, has gained significant attention in recent years due to its widespread significance in agricultural productivity. Specifically, arbuscular mycorrhizal fungi (AMF) provide a range of benefits to grain and oil crops, including improved nutrient uptake, growth, and resistance to (a)biotic stressors. Harnessing this symbiotic interaction using molecular and systems biology approaches presents promising opportunities for sustainable and economically-viable agricultural practices. Research in this area aims to identify and manipulate specific genes and pathways involved in the symbiotic interaction, leading to improved cereal and oilseed crop yields and nutrient acquisition. This review provides an overview of the research frontier on utilizing molecular and systems biology approaches for harnessing the symbiotic interaction in mycorrhizal symbiosis for grain and oil crop cultivation. Moreover, we address the mechanistic insights and molecular determinants underpinning this exchange. We conclude with an overview of current efforts to harness mycorrhizal diversity to improve cereal and oilseed health through systems biology.
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Affiliation(s)
- Aiman Slimani
- Centre d’Agrobiotechnologie et Bioingénierie, Unité de Recherche Labellisée CNRST (Centre AgroBiotech-URL-CNRST-05), Cadi Ayyad University, Marrakesh 40000, Morocco
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
- Laboratory of Microbial Biotechnologies, Agrosciences, and Environment, Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
| | - Mohamed Ait-El-Mokhtar
- Laboratory Biochemistry, Environment & Agri-Food URAC 36, Department of Biology, Faculty of Science and Techniques—Mohammedia, Hassan II University of Casablanca, Mohammedia 28800, Morocco
| | - Raja Ben-Laouane
- Laboratory of Environment and Health, Department of Biology, Faculty of Science and Techniques, Errachidia 52000, Morocco
| | - Abderrahim Boutasknit
- Centre d’Agrobiotechnologie et Bioingénierie, Unité de Recherche Labellisée CNRST (Centre AgroBiotech-URL-CNRST-05), Cadi Ayyad University, Marrakesh 40000, Morocco
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
- Department of Biology, Multidisciplinary Faculty of Nador, Mohamed First University, Nador 62700, Morocco
| | - Mohamed Anli
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
- Department of Life, Earth and Environmental Sciences, University of Comoros, Patsy University Center, Moroni 269, Comoros
| | - El Faiza Abouraicha
- Centre d’Agrobiotechnologie et Bioingénierie, Unité de Recherche Labellisée CNRST (Centre AgroBiotech-URL-CNRST-05), Cadi Ayyad University, Marrakesh 40000, Morocco
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
- Higher Institute of Nursing and Health Techniques (ISPITS), Essaouira 44000, Morocco
| | - Khalid Oufdou
- Laboratory of Microbial Biotechnologies, Agrosciences, and Environment, Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
| | - Abdelilah Meddich
- Centre d’Agrobiotechnologie et Bioingénierie, Unité de Recherche Labellisée CNRST (Centre AgroBiotech-URL-CNRST-05), Cadi Ayyad University, Marrakesh 40000, Morocco
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
| | - Marouane Baslam
- Centre d’Agrobiotechnologie et Bioingénierie, Unité de Recherche Labellisée CNRST (Centre AgroBiotech-URL-CNRST-05), Cadi Ayyad University, Marrakesh 40000, Morocco
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Department of Biology, Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco
- GrowSmart, Seoul 03129, Republic of Korea
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15
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Vannier N, Mesny F, Getzke F, Chesneau G, Dethier L, Ordon J, Thiergart T, Hacquard S. Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota. Nat Commun 2023; 14:8274. [PMID: 38092730 PMCID: PMC10719396 DOI: 10.1038/s41467-023-43688-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 11/16/2023] [Indexed: 12/17/2023] Open
Abstract
The identification of processes activated by specific microbes during microbiota colonization of plant roots has been hampered by technical constraints in metatranscriptomics. These include lack of reference genomes, high representation of host or microbial rRNA sequences in datasets, or difficulty to experimentally validate gene functions. Here, we recolonized germ-free Arabidopsis thaliana with a synthetic, yet representative root microbiota comprising 106 genome-sequenced bacterial and fungal isolates. We used multi-kingdom rRNA depletion, deep RNA-sequencing and read mapping against reference microbial genomes to analyse the in planta metatranscriptome of abundant colonizers. We identified over 3,000 microbial genes that were differentially regulated at the soil-root interface. Translation and energy production processes were consistently activated in planta, and their induction correlated with bacterial strains' abundance in roots. Finally, we used targeted mutagenesis to show that several genes consistently induced by multiple bacteria are required for root colonization in one of the abundant bacterial strains (a genetically tractable Rhodanobacter). Our results indicate that microbiota members activate strain-specific processes but also common gene sets to colonize plant roots.
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Affiliation(s)
- Nathan Vannier
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France
| | - Fantin Mesny
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
- Institute for Plant Sciences, University of Cologne, 50923, Cologne, Germany
| | - Felix Getzke
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
| | - Guillaume Chesneau
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
| | - Laura Dethier
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
| | - Jana Ordon
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
| | - Thorsten Thiergart
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany
| | - Stéphane Hacquard
- Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany.
- Cluster of Excellence on Plant Sciences, Max Planck Institute for Plant Breeding Research, 50829, Cologne, Germany.
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16
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Barka EA, Jeandet P, Lahlali R. The Hidden World within Plants 2.0. Microorganisms 2023; 11:2903. [PMID: 38138046 PMCID: PMC10745288 DOI: 10.3390/microorganisms11122903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2023] [Accepted: 11/30/2023] [Indexed: 12/24/2023] Open
Abstract
Interactions between plants and microorganisms are complex, with some microorganisms causing damage by employing strategies that hinder plant growth and reproduction, while others positively influence plant growth through various physiological activities [...].
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Affiliation(s)
- Essaid Ait Barka
- Unité de Recherche Résistance Induite et Bio-Protection des Plantes, USC INRAe 1488, Université de Reims Champagne-Ardenne, 51100 Reims, France;
| | - Philippe Jeandet
- Unité de Recherche Résistance Induite et Bio-Protection des Plantes, USC INRAe 1488, Université de Reims Champagne-Ardenne, 51100 Reims, France;
| | - Rachid Lahlali
- Phytopathology Unit, Department of Plant Protection, Ecole Nationale d’Agriculture de Meknès, Km10, Rte Haj Kaddour, BP S/40, Menkes 50001, Morocco
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17
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Tang B, Man J, Lehmann A, Rillig MC. Arbuscular mycorrhizal fungi benefit plants in response to major global change factors. Ecol Lett 2023; 26:2087-2097. [PMID: 37794719 DOI: 10.1111/ele.14320] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 09/14/2023] [Accepted: 09/15/2023] [Indexed: 10/06/2023]
Abstract
Land plants play a key role in global carbon cycling, but the potential role of arbuscular mycorrhizal fungi (AMF) in the responses of a wide range of plant species to global change factors (GCFs) remains limited. Based on 1100 paired observations from 181 plant species, we conducted a meta-analysis to test the role of AMF in plant responses to four GCFs: drought, warming, nitrogen (N) addition and elevated CO2 . We show that AMF significantly ameliorate the negative effects of drought on plant performance. The GCFs N addition and elevated CO2 significantly enhance the performance of AM plants but not of non-inoculated plants. AM plants show better performance than their non-inoculated counterparts under warming, although neither of them showed a significant response to this GCF. These results suggest that AMF benefit plants in response to GCFs. Our study highlights the importance of AMF in enhancing plant performance under ongoing global change.
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Affiliation(s)
- Bo Tang
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Jing Man
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Anika Lehmann
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
| | - Matthias C Rillig
- Institute of Biology, Freie Universität Berlin, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Berlin, Germany
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18
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Wu F, Zhao M, Zhang Y, Si W, Cheng B, Li X. Systematic analysis of the Rboh gene family in seven gramineous plants and its roles in response to arbuscular mycorrhizal fungi in maize. BMC PLANT BIOLOGY 2023; 23:603. [PMID: 38030972 PMCID: PMC10688149 DOI: 10.1186/s12870-023-04571-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 10/29/2023] [Indexed: 12/01/2023]
Abstract
BACKGROUND Plant respiratory burst oxidase homolog (Rboh) gene family produces reactive oxygen species (ROS), and it plays key roles in plant-microbe interaction. Most Rboh gene family-related studies mainly focused on dicotyledonous plants; however, little is known about the roles of Rboh genes in gramineae. RESULTS A total of 106 Rboh genes were identified in seven gramineae species, including Zea mays, Sorghum bicolor, Brachypodium distachyon, Oryza sativa, Setaria italica, Hordeum vulgare, and Triticum aestivum. The Rboh protein sequences showed high similarities, suggesting that they may have conserved functions across different species. Duplication mode analysis detected whole-genome/segmental duplication (WGD)/(SD) and dispersed in the seven species. Interestingly, two local duplication (LD, including tandem and proximal duplication) modes were found in Z. mays, S. italica and H. vulgare, while four LD were detected in T. aestivum, indicating that these genes may have similar functions. Collinearity analysis indicated that Rboh genes are at a stable evolution state in all the seven species. Besides, Rboh genes from Z. mays were closely related to those from S. bicolor, consistent with the current understanding of plant evolutionary history. Phylogenetic analysis showed that the genes in the subgroups I and II may participate in plant-AM fungus symbiosis. Cis-element analysis showed that different numbers of elements are related to fungal induction in the promoter region. Expression profiles of Rboh genes in Z. mays suggested that Rboh genes had distinct spatial expression patterns. By inoculation with AM fungi, our transcriptome analysis showed that the expression of Rboh genes varies upon AM fungal inoculation. In particularly, ZmRbohF was significantly upregulated after inoculation with AM fungi. pZmRbohF::GUS expression analyses indicated that ZmRbohF was induced by arbuscular mycorrhizal fungi in maize. By comparing WT and ZmRbohF mutant, we found ZmRbohF had limited impact on the establishment of maize-AM fungi symbiosis, but play critical roles in regulating the proper development of arbuscules. CONCLUSIONS This study provides a comprehensive analysis of the evolution relationship of Rboh genes in seven gramineae species. Results showed that several Rboh genes regulate maize-AM fungal symbiosis process. This study provides valuable information for further studies of Rboh genes in gramineae.
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Affiliation(s)
- Fulang Wu
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China
- College of Life Science, Anhui Agricultural University of China, Changjiang West Road, Hefei, 230036, China
| | - Manli Zhao
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China
- College of Life Science, Anhui Agricultural University of China, Changjiang West Road, Hefei, 230036, China
| | - Yajing Zhang
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China
- College of Life Science, Anhui Agricultural University of China, Changjiang West Road, Hefei, 230036, China
| | - Weina Si
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China
- College of Life Science, Anhui Agricultural University of China, Changjiang West Road, Hefei, 230036, China
| | - Beijiu Cheng
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China.
- College of Life Science, Anhui Agricultural University of China, Changjiang West Road, Hefei, 230036, China.
| | - Xiaoyu Li
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China.
- College of Life Science, Anhui Agricultural University of China, Changjiang West Road, Hefei, 230036, China.
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19
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Qiao SA, Gao Z, Roth R. A perspective on cross-kingdom RNA interference in mutualistic symbioses. THE NEW PHYTOLOGIST 2023; 240:68-79. [PMID: 37452489 PMCID: PMC10952549 DOI: 10.1111/nph.19122] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 05/24/2023] [Indexed: 07/18/2023]
Abstract
RNA interference (RNAi) is arguably one of the more versatile mechanisms in cell biology, facilitating the fine regulation of gene expression and protection against mobile genomic elements, whilst also constituting a key aspect of induced plant immunity. More recently, the use of this mechanism to regulate gene expression in heterospecific partners - cross-kingdom RNAi (ckRNAi) - has been shown to form a critical part of bidirectional interactions between hosts and endosymbionts, regulating the interplay between microbial infection mechanisms and host immunity. Here, we review the current understanding of ckRNAi as it relates to interactions between plants and their pathogenic and mutualistic endosymbionts, with particular emphasis on evidence in support of ckRNAi in the arbuscular mycorrhizal symbiosis.
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Affiliation(s)
- Serena A Qiao
- Department of Biology, University of Oxford, Oxford, OX1 3RB, UK
| | - Zongyu Gao
- Department of Biology, University of Oxford, Oxford, OX1 3RB, UK
| | - Ronelle Roth
- Department of Biology, University of Oxford, Oxford, OX1 3RB, UK
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20
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Mongès A, Yaakoub H, Bidon B, Glévarec G, Héricourt F, Carpin S, Chauderon L, Drašarová L, Spíchal L, Binder BM, Papon N, Rochange S. Are Histidine Kinases of Arbuscular Mycorrhizal Fungi Involved in the Response to Ethylene and Cytokinins? MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2023; 36:656-665. [PMID: 37851914 DOI: 10.1094/mpmi-05-23-0056-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2023]
Abstract
Signals are exchanged at all stages of the arbuscular mycorrhizal (AM) symbiosis between fungi and their host plants. Root-exuded strigolactones are well-known early symbiotic cues, but the role of other phytohormones as interkingdom signals has seldom been investigated. Here we focus on ethylene and cytokinins, for which candidate receptors have been identified in the genome of the AM fungus Rhizophagus irregularis. Ethylene is known from the literature to affect asymbiotic development of AM fungi, and in the present study, we found that three cytokinin forms could stimulate spore germination in R. irregularis. Heterologous complementation of a Saccharomyces cerevisiae mutant strain with the candidate ethylene receptor RiHHK6 suggested that this protein can sense and transduce an ethylene signal. Accordingly, its N-terminal domain expressed in Pichia pastoris displayed saturable binding to radiolabeled ethylene. Thus, RiHHK6 displays the expected characteristics of an ethylene receptor. In contrast, the candidate cytokinin receptor RiHHK7 did not complement the S. cerevisiae mutant strain or Medicago truncatula cytokinin receptor mutants and seemed unable to bind cytokinins, suggesting that another receptor is involved in the perception of these phytohormones. Taken together, our results support the hypothesis that AM fungi respond to a range of phytohormones and that these compounds bear multiple functions in the rhizosphere beyond their known roles as internal plant developmental regulators. Our analysis of two phytohormone receptor candidates also sheds new light on the possible perception mechanisms in AM fungi. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
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Affiliation(s)
- Ayla Mongès
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique, Université Paul Sabatier, INP Toulouse, 31326 Castanet-Tolosan, France
| | - Hajar Yaakoub
- UNIV Angers, IRF, SFR 4208 ICAT, F-49000 Angers, France
| | | | - Gaëlle Glévarec
- EA2106 Biomolécules et Biotechnologies Végétales, Université de Tours, Tours, France
| | - François Héricourt
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), Université d'Orléans, INRAE USC1328, 45067 Orléans Cedex 2, France
| | - Sabine Carpin
- Laboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC), Université d'Orléans, INRAE USC1328, 45067 Orléans Cedex 2, France
| | - Lucie Chauderon
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique, Université Paul Sabatier, INP Toulouse, 31326 Castanet-Tolosan, France
| | - Lenka Drašarová
- Isotope Laboratory, Institute of Experimental Botany, The Czech Academy of Sciences, Vídeňská, 1083, Prague, Czech Republic
| | - Lukáš Spíchal
- Czech Advanced Technology and Research Institute, Šlechtitelů 27, Olomouc CZ-783 71, Palacký University, Olomouc, Czech Republic
| | - Brad M Binder
- Department of Biochemistry and Cellular & Molecular Biology, University of Tennessee, Knoxville, TN, U.S.A
| | - Nicolas Papon
- UNIV Angers, IRF, SFR 4208 ICAT, F-49000 Angers, France
| | - Soizic Rochange
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, Centre National de la Recherche Scientifique, Université Paul Sabatier, INP Toulouse, 31326 Castanet-Tolosan, France
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21
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Duc NH, Szentpéteri V, Mayer Z, Posta K. Distinct impact of arbuscular mycorrhizal isolates on tomato plant tolerance to drought combined with chronic and acute heat stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 201:107892. [PMID: 37490823 DOI: 10.1016/j.plaphy.2023.107892] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 06/17/2023] [Accepted: 07/10/2023] [Indexed: 07/27/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi could mitigate individual drought and heat stress in host plants. However, there are still major gaps in our understanding of AM symbiosis response to the combined stresses. Here, we compared seven AM fungi, Rhizophagus irregularis, Funneliformis mosseae, Funneliformis geosporum, Funneliformis verruculosum, Funneliformis coronatum, Septoglomus deserticola, Septoglomus constrictum, distributed to many world regions in terms of their impacts on tomato endurance to combined drought and chronic heat as well as combined drought and heat shock. A multidisciplinary approach including morphometric, ecophysiological, biochemical, targeted metabolic (by ultrahigh-performance LC-MS), and molecular analyses was applied. The variation among AM fungi isolates in the enhancement in leaf water potential, stomatal conductance, photosynthetic activity, and maximal PSII photochemical efficiency, proline accumulation, antioxidant enzymes (POD, SOD, CAT), and lowered ROS markers (H2O2, MDA) in host plants under combined stresses were observed. S. constrictum inoculation could better enhanced the host plant physiology and biochemical parameters, while F. geosporum colonization less positively influenced the host plants than other treatments under both combined stresses. F. mosseae- and S. constrictum-associated plants showed the common AM-induced modifications and AM species-specific alterations in phytohormones (ABA, SA, JA, IAA), aquaporin (SlSIP1-2; SlTIP2-3; SlNIP2-1; SlPIP2-1) and abiotic stress-responsive genes (SlAREB1, SlLEA, SlHSP70, SlHSP90) in host plants under combined stresses. Altogether, mycorrhizal mitigation of the negative impacts of drought + prolonged heat and drought + acute heat, with the variation among different AM fungi isolates, depending on the specific combined stress and stress duration.
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Affiliation(s)
- Nguyen Hong Duc
- Department of Microbiology and Applied Biotechnology, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences (MATE), Gödöllő, Hungary
| | - Viktor Szentpéteri
- Department of Microbiology and Applied Biotechnology, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences (MATE), Gödöllő, Hungary; Agribiotechnology and Precision Breeding for Food Security National Laboratory, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences (MATE), Gödöllő, Hungary
| | - Zoltán Mayer
- Department of Microbiology and Applied Biotechnology, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences (MATE), Gödöllő, Hungary
| | - Katalin Posta
- Department of Microbiology and Applied Biotechnology, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences (MATE), Gödöllő, Hungary; Agribiotechnology and Precision Breeding for Food Security National Laboratory, Institute of Genetics and Biotechnology, Hungarian University of Agriculture and Life Sciences (MATE), Gödöllő, Hungary.
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Wang X, Chang W, Fan X, Li K, Zhang M, Ping Y, He X, Song F. Cocultivation with Solanum nigrum and inoculation with Rhizophagus intraradices can improve plant photosynthesis and antioxidant defense to alleviate cadmium toxicity to soybean. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 256:114849. [PMID: 37011513 DOI: 10.1016/j.ecoenv.2023.114849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 03/25/2023] [Accepted: 03/28/2023] [Indexed: 06/19/2023]
Abstract
High Cd pollution can damage plant physiology and seriously threaten ecological security and human health. Therefore, we designed a cropping system, arbuscular mycorrhizal fungi (AMF) - soybean - Solanum nigrum L., to solve the high Cd pollution problem in an environmentally and economically friendly way. The results showed that AMF were able to break free from the constraints of cocultivation and still promote plant photosynthesis and growth in combined treatments to resist Cd stress. In addition, cocultivation combined with AMF improved the antioxidant defense to scavenge reactive oxygen species by promoting the production of antioxidant enzymes and nonenzyme substances in host plants. The glutathione content in soybean and the catalase activity in nightshade were recorded at the highest values under cocultivation combined with AMF treatment, which were 23.68% and 129.12% higher than those of monoculture without AMF treatments. The improvement in antioxidant defense alleviated oxidative stress, which was manifested by the reduction in Cd dense electronic particles in the ultrastructure and a 26.38% decrease in MDA content. Furthermore, this cropping mode combined the advantages of cocultivation to improve the Cd extraction efficiency and Rhizophagus intraradices to limit Cd accumulation and transport so that Cd was more accumulated and restricted in the roots of the cocultivated Solanum nigrum L., and the Cd concentration in soybean beans was reduced by 56% compared with the soybean monoculture without AMF treatment. Therefore, we suggest that this cropping system is a comprehensive and mild remediation technology suitable for highly Cd-contaminated soil.
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Affiliation(s)
- Xiaohui Wang
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin 150080, China; Jiaxiang Industrial Technology Research Institute of Heilongjiang University, Jining 272000, Shandong Province, China
| | - Wei Chang
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin 150080, China; Jiaxiang Industrial Technology Research Institute of Heilongjiang University, Jining 272000, Shandong Province, China
| | - Xiaoxu Fan
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin 150080, China
| | - Kun Li
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin 150080, China
| | - Mengmeng Zhang
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin 150080, China
| | - Yuan Ping
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin 150080, China
| | - Xin He
- Hebei University of Environmental Engineering, Hebei Key Laboratory of Agroecological Safety, Qinhuangdao 066102, China
| | - Fuqiang Song
- Engineering Research Center of Agricultural Microbiology Technology, Ministry of Education & Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region & Key Laboratory of Microbiology, College of Heilongjiang Province & School of Life Sciences, Heilongjiang University, Harbin 150080, China; Jiaxiang Industrial Technology Research Institute of Heilongjiang University, Jining 272000, Shandong Province, China.
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23
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Peng M, He H, Wang X, Wang Z, Zhuang L. Comparison of network connectivity and environmental driving factors of root-associated fungal communities of desert ephemeral plants in two habitat soils. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 332:117375. [PMID: 36716547 DOI: 10.1016/j.jenvman.2023.117375] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 01/04/2023] [Accepted: 01/24/2023] [Indexed: 06/18/2023]
Abstract
Root-associated microorganisms regulate plant growth and development, and their distribution is likely influenced by habitat conditions. In this study, the responses of rhizosphere and root-endophytic fungi of dominant ephemeral plants to aeolian soil (AS) and grey desert soil (DS) in the Gurbantünggüt Desert were analyzed using high-throughput sequencing. This was done to understand the adaptation strategies of this vegetation in typical habitat soils from a microbial perspective. We found that the diversity of root-associated fungi of ephemeral plants differed in the two habitat soils. The diversity of rhizosphere fungi was relatively low in AS compared to DS, whereas the diversity of root-endophytic fungi was higher in AS. The community structure of root-associated fungi and relative abundances of some dominant taxa differed between the two soils. A co-occurrence network showed that the degree of coupling and interaction between root-associated fungal taxa were closer in AS than in DS and that most of the fungal taxa were cooperative in the two habitat soils. Additionally, the network properties of the root-endophytic fungi were apparent different between the two soils. Environmental factors, including electrical conductivity, soil organic carbon, carbon/nitrogen, and carbon/phosphorus ratios, were found to be key factors affecting rhizosphere fungi in DS, whereas soil available phosphorus was the main factor in AS. Several factors affect the root-endophytic fungal community and are more influential in DS than in AS. Overall, the root-associated fungal communities of ephemeral plants had different adaptation strategies to the two soils: increasing the diversity of rhizosphere fungi and their relationship with environmental factors in DS, and increasing the diversity and network relationships of root-endophytic fungi in AS. These findings provide insight into the assemblage of ephemeral plant root-associated microbial communities and the underlying environmental factors, which allows for a deeper understanding of how to construct an artificial core root microbiota to promote plant growth and resistance.
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Affiliation(s)
- Mengwen Peng
- College of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, PR China
| | - Hao He
- Key Laboratory of Oasis Eco-agriculture, Xinjiang Production and Construction Corps, College of Agriculture, Shihezi University, Shihezi, Xinjiang, 832003, PR China
| | - Xiushuang Wang
- College of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, PR China
| | - Zhongke Wang
- College of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, PR China
| | - Li Zhuang
- College of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, PR China.
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24
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Yooyongwech S, Tisarum R, Samphumphuang T, Phisalaphong M, Cha-Um S. Integrated strength of osmotic potential and phosphorus to achieve grain yield of rice under water deficit by arbuscular mycorrhiza fungi. Sci Rep 2023; 13:5999. [PMID: 37046003 PMCID: PMC10097676 DOI: 10.1038/s41598-023-33304-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Accepted: 04/10/2023] [Indexed: 04/14/2023] Open
Abstract
Arbuscular mycorrhizal ecosystem provides sustainability to plant integrity under drought situations. However, host plants that survive in drought frequently lose yield. The potential of Funneliformis mosseae (F), Claroideoglomus etunicatum (C), and Acaulospora fovaeta (A) was assessed to evaluate in indica rice cv. Leum Pua during booting stage under 21-day water withholding. The effects of three inoculation types; (i) F, (ii) F + C (FC), and (iii) F + C + A (FCA), on physiological, biochemical, and yield traits were investigated. The three types showed an induced total chlorophyll content in the host as compared to uninoculated plants. Total soluble sugars and free proline were less regulated by FC and FCA inoculated plants than by F inoculated plants under water deficit conditions. However, the FC and FCA inoculations increased phosphorus content, particularly in the shoots of water-stressed plants. In the three inoculations, the FCA dramatically improved plant osmotic potential adaptability under water deficit stress. Furthermore, even when exposed to the water deficit condition, panicle weight, grain number, and grain maturity were maintained in FCA inoculated plants. According to the findings, the increased osmotic potential and phosphorus content of the FCA-inoculated rice plant provide a protection sign against drought stress and will benefit food security in the future.
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Affiliation(s)
- Suravoot Yooyongwech
- School of Interdisciplinary Studies (Kanchanaburi Campus), Mahidol University, Kanchanaburi, 71150, Thailand.
| | - Rujira Tisarum
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, 12120, Thailand
| | - Thapanee Samphumphuang
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, 12120, Thailand
| | - Muenduen Phisalaphong
- Department of Chemical Engineering, Faculty of Engineering, Chulalongkorn University, Bangkok, 10330, Thailand
| | - Suriyan Cha-Um
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, 12120, Thailand
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25
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Domingo G, Vannini C, Bracale M, Bonfante P. Proteomics as a tool to decipher plant responses in arbuscular mycorrhizal interactions: a meta-analysis. Proteomics 2023; 23:e2200108. [PMID: 36571480 DOI: 10.1002/pmic.202200108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 11/09/2022] [Accepted: 12/21/2022] [Indexed: 12/27/2022]
Abstract
The beneficial symbiosis between plants and arbuscular mycorrhizal (AM) fungi leads to a deep reprogramming of plant metabolism, involving the regulation of several molecular mechanisms, many of which are poorly characterized. In this regard, proteomics is a powerful tool to explore changes related to plant-microbe interactions. This study provides a comprehensive proteomic meta-analysis conducted on AM-modulated proteins at local (roots) and systemic (shoots/leaves) level. The analysis was implemented by an in-depth study of root membrane-associated proteins and by a comparison with a transcriptome meta-analysis. A total of 4262 differentially abundant proteins were retrieved and, to identify the most relevant AM-regulated processes, a range of bioinformatic studies were conducted, including functional enrichment and protein-protein interaction network analysis. In addition to several protein transporters which are present in higher amounts in AM plants, and which are expected due to the well-known enhancement of AM-induced mineral uptake, our analysis revealed some novel traits. We detected a massive systemic reprogramming of translation with a central role played by the ribosomal translational apparatus. On one hand, these new protein-synthesis efforts well support the root cellular re-organization required by the fungal penetration, and on the other they have a systemic impact on primary metabolism.
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Affiliation(s)
- Guido Domingo
- Biotechnology and Life Science Department, University of Insubria, Varese, Italy
| | - Candida Vannini
- Biotechnology and Life Science Department, University of Insubria, Varese, Italy
| | - Marcella Bracale
- Biotechnology and Life Science Department, University of Insubria, Varese, Italy
| | - Paola Bonfante
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, Torino, Italy
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26
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Giovannetti M, Salvioli di Fossalunga A, Stringlis IA, Proietti S, Fiorilli V. Unearthing soil-plant-microbiota crosstalk: Looking back to move forward. FRONTIERS IN PLANT SCIENCE 2023; 13:1082752. [PMID: 36762185 PMCID: PMC9902496 DOI: 10.3389/fpls.2022.1082752] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 12/29/2022] [Indexed: 06/18/2023]
Abstract
The soil is vital for life on Earth and its biodiversity. However, being a non-renewable and threatened resource, preserving soil quality is crucial to maintain a range of ecosystem services critical to ecological balances, food production and human health. In an agricultural context, soil quality is often perceived as the ability to support field production, and thus soil quality and fertility are strictly interconnected. The concept of, as well as the ways to assess, soil fertility has undergone big changes over the years. Crop performance has been historically used as an indicator for soil quality and fertility. Then, analysis of a range of physico-chemical parameters has been used to routinely assess soil quality. Today it is becoming evident that soil quality must be evaluated by combining parameters that refer both to the physico-chemical and the biological levels. However, it can be challenging to find adequate indexes for evaluating soil quality that are both predictive and easy to measure in situ. An ideal soil quality assessment method should be flexible, sensitive enough to detect changes in soil functions, management and climate, and should allow comparability among sites. In this review, we discuss the current status of soil quality indicators and existing databases of harmonized, open-access topsoil data. We also explore the connections between soil biotic and abiotic features and crop performance in an agricultural context. Finally, based on current knowledge and technical advancements, we argue that the use of plant health traits represents a powerful way to assess soil physico-chemical and biological properties. These plant health parameters can serve as proxies for different soil features that characterize soil quality both at the physico-chemical and at the microbiological level, including soil quality, fertility and composition of soil microbial communities.
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Affiliation(s)
- Marco Giovannetti
- Department of Biology, University of Padova, Padova, Italy
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | | | - Ioannis A. Stringlis
- Plant - Microbe Interactions, Department of Biology, Science4Life, Utrecht University, Utrecht, Netherlands
| | - Silvia Proietti
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Valentina Fiorilli
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
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27
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Bonfante P. How to reconnect mycorrhizal research with natural environments. Environ Microbiol 2023; 25:59-63. [PMID: 36655714 DOI: 10.1111/1462-2920.16199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Accepted: 08/30/2022] [Indexed: 01/25/2023]
Affiliation(s)
- Paola Bonfante
- Department of Life Sciences and Systems Biology, University of Torino, Torino, Italy
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28
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Üstüner S, Schäfer P, Eichmann R. Development specifies, diversifies and empowers root immunity. EMBO Rep 2022; 23:e55631. [PMID: 36330761 PMCID: PMC9724680 DOI: 10.15252/embr.202255631] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 10/10/2022] [Accepted: 10/13/2022] [Indexed: 08/04/2023] Open
Abstract
Roots are a highly organised plant tissue consisting of different cell types with distinct developmental functions defined by cell identity networks. Roots are the target of some of the most devastating diseases and possess a highly effective immune system. The recognition of microbe- or plant-derived molecules released in response to microbial attack is highly important in the activation of complex immunity gene networks. Development and immunity are intertwined, and immunity activation can result in growth inhibition. In turn, by connecting immunity and cell identity regulators, cell types are able to launch a cell type-specific immunity based on the developmental function of each cell type. By this strategy, fundamental developmental processes of each cell type contribute their most basic functions to drive cost-effective but highly diverse and, thus, efficient immune responses. This review highlights the interdependence of root development and immunity and how the developmental age of root cells contributes to positive and negative outcomes of development-immunity cross-talk.
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Affiliation(s)
- Sim Üstüner
- Institute of Phytopathology, Research Centre for BioSystems, Land Use and NutritionJustus Liebig UniversityGiessenGermany
| | - Patrick Schäfer
- Institute of Phytopathology, Research Centre for BioSystems, Land Use and NutritionJustus Liebig UniversityGiessenGermany
| | - Ruth Eichmann
- Institute of Phytopathology, Research Centre for BioSystems, Land Use and NutritionJustus Liebig UniversityGiessenGermany
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29
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Arbuscular mycorrhiza alters the nutritional requirements in Salvia miltiorrhiza and low nitrogen enhances the mycorrhizal efficiency. Sci Rep 2022; 12:19633. [PMID: 36385104 PMCID: PMC9668911 DOI: 10.1038/s41598-022-17121-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 07/20/2022] [Indexed: 11/17/2022] Open
Abstract
Salvia miltiorrhiza Bunge (danshen in Chinese) is one of the most important medicinal cash crops in China. Previously, we showed that arbuscular mycorrhizal fungi (AMF) can promote S. miltiorrhiza growth and the accumulation of bioactive compounds. Fertilization may affect mycorrhizal efficiency, and appropriate doses of phosphate (P) and nitrogen (N) fertilizers are key factors for obtaining mycorrhizal benefits. However, the optimal fertilization amount for mycorrhizal S. miltiorrhiza remains unclear. In this study, we studied the effects of AMF on the growth and bioactive compounds of S. miltiorrhiza under different doses (low, medium, and high) of P and N fertilizer. The results showed that the mycorrhizal growth response (MGR) and mycorrhizal response of bioactive compounds (MBC) decreased gradually with increasing P addition. Application of a low (N25) dose of N fertilizer significantly increased the MGR of mycorrhizal S. miltiorrhiza, and a medium (N50) dose of N fertilizer significantly increased the MBC of phenolic acids, but decreased the MBC of tanshinones. Our results also showed that the existence of arbuscular mycorrhiza changes nutrient requirement pattern of S. miltiorrhiza. P is the limiting nutrient of non-mycorrhizal plants whereas N is the limiting nutrient of mycorrhizal plants.
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30
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Sun D, Yang X, Wang Y, Fan Y, Ding P, Song X, Yuan X, Yang X. Stronger mutualistic interactions with arbuscular mycorrhizal fungi help Asteraceae invaders outcompete the phylogenetically related natives. THE NEW PHYTOLOGIST 2022; 236:1487-1496. [PMID: 35975696 DOI: 10.1111/nph.18435] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Accepted: 08/04/2022] [Indexed: 06/15/2023]
Abstract
Mutualistic interactions with arbuscular mycorrhizal fungi (AMF) greatly affect the outcome of plant-plant competition, especially for invasive plants competing against native plants. We examined the effects of AMF on the competition between invasive Asteraceae plants and the phylogenetically related native plants. We compared the performance of seven invasive Asteraceae plants from different genera with that of their phylogenetically related native counterparts in response to AMF in monocultures and mixed cultures. We investigated how interactions with AMF impact the competition between Asteraceae relatives. Total biomass increased with AMF colonization in both invasive and native plants. Arbuscular mycorrhizal fungi improved the competitiveness of invasive plants, but decreased that of native plants. Competition increased the shoot nitrogen, phosphorus and root myristic acid concentrations and relative expression of fatty acid transporter genes (RiFAT1 and RiFAT2) in AMF-colonized invasive plants, but decreased those in AMF-colonized native plants. Structural equation models indicated that the presence of AMF increased the uptake of phosphorus, but not nitrogen, by invasive plants, which probably provided more myristic acids to symbiotic AMF in return. These results suggest that invasive Asteraceae plants have greater mutualistic interactions with AMF than their phylogenetically related native counterparts, potentially contributing to invasion success.
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Affiliation(s)
- Dasheng Sun
- College of Resources and Environment, Shanxi Agricultural University, Taigu, 030801, China
| | - Xueping Yang
- College of Agriculture, Shanxi Agricultural University, Taigu, 030801, China
| | - Yi Wang
- Yunnan Key Laboratory of Plant Reproductive Adaptation and Evolutionary Ecology and Centre for Invasion Biology, Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University, Kunming, 650504, China
| | - Yu Fan
- College of Agriculture, Shanxi Agricultural University, Taigu, 030801, China
| | - Pengcheng Ding
- College of Agriculture, Shanxi Agricultural University, Taigu, 030801, China
| | - Xi'E Song
- College of Agriculture, Shanxi Agricultural University, Taigu, 030801, China
| | - Xiangyang Yuan
- College of Agriculture, Shanxi Agricultural University, Taigu, 030801, China
| | - Xuefang Yang
- College of Agriculture, Shanxi Agricultural University, Taigu, 030801, China
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31
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Loo WT, Chua KO, Mazumdar P, Cheng A, Osman N, Harikrishna JA. Arbuscular Mycorrhizal Symbiosis: A Strategy for Mitigating the Impacts of Climate Change on Tropical Legume Crops. PLANTS (BASEL, SWITZERLAND) 2022; 11:2875. [PMID: 36365329 PMCID: PMC9657156 DOI: 10.3390/plants11212875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 10/22/2022] [Accepted: 10/24/2022] [Indexed: 06/16/2023]
Abstract
Climate change is likely to have severe impacts on food security in the topics as these regions of the world have both the highest human populations and narrower climatic niches, which reduce the diversity of suitable crops. Legume crops are of particular importance to food security, supplying dietary protein for humans both directly and in their use for feed and forage. Other than the rhizobia associated with legumes, soil microbes, in particular arbuscular mycorrhizal fungi (AMF), can mitigate the effects of biotic and abiotic stresses, offering an important complementary measure to protect crop yields. This review presents current knowledge on AMF, highlights their beneficial role, and explores the potential for application of AMF in mitigating abiotic and biotic challenges for tropical legumes. Due to the relatively little study on tropical legume species compared to their temperate growing counterparts, much further research is needed to determine how similar AMF-plant interactions are in tropical legumes, which AMF species are optimal for agricultural deployment and especially to identify anaerobic AMF species that could be used to mitigate flood stress in tropical legume crop farming. These opportunities for research also require international cooperation and support, to realize the promise of tropical legume crops to contribute to future food security.
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Affiliation(s)
- Wan Teng Loo
- Centre for Research in Biotechnology for Agriculture, University of Malaya, Kuala Lumpur 50603, Malaysia
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia
| | - Kah-Ooi Chua
- Centre for Research in Biotechnology for Agriculture, University of Malaya, Kuala Lumpur 50603, Malaysia
| | - Purabi Mazumdar
- Centre for Research in Biotechnology for Agriculture, University of Malaya, Kuala Lumpur 50603, Malaysia
| | - Acga Cheng
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia
| | - Normaniza Osman
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia
| | - Jennifer Ann Harikrishna
- Centre for Research in Biotechnology for Agriculture, University of Malaya, Kuala Lumpur 50603, Malaysia
- Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur 50603, Malaysia
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32
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Shen K, He Y, Xu X, Umer M, Liu X, Xia T, Guo Y, Wu B, Xu H, Zang L, Gao L, Jiao M, Yang X, Yan J. Effects of AMF on plant nutrition and growth depend on substrate gravel content and patchiness in the karst species Bidens pilosa L. FRONTIERS IN PLANT SCIENCE 2022; 13:968719. [PMID: 36247600 PMCID: PMC9557229 DOI: 10.3389/fpls.2022.968719] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Accepted: 09/05/2022] [Indexed: 06/16/2023]
Abstract
Karst ecosystems represent a typical heterogeneous habitat, and it is ubiquitous with varying interactive patches of rock and soil associated with differential weathering patterns of carbonate rocks. Arbuscular mycorrhizae fungi (AMF) play an important role in regulating plant growth and nutrition in heterogeneous karst habitats. However, it remains unclear how AMF affects the growth and nutrition of plants in heterogeneous karst soil with varying patches and weathering gravel. A heterogeneous experiment with Bidens pilosa L. was conducted in a grid microcosm through patching karst soil with different gravel contents. The experimental treatments included the AMF treatments inoculated with (M+) or without (M-) fungus Glomus etunicatum; the substrate patchiness treatments involved different sizes of the homogeneous patch (Homo), the heterogeneous large patch (Hetl), and the heterogeneous small patch (Hets); the substrate gravel treatments in the inner patch involved the free gravel (FG), the low gravel (LG) 20% in 80% soil, and the high gravel (HG) 40% in 60% soil. Plant traits related to growth and nutrients were analyzed by comparing substrate gravel content and patch size. The results showed that AMF was more beneficial in increasing the aboveground biomass of B. pilosa under the LG and HG substrates with a higher root mycorrhizal colonization rate than under the FG substrate with a lower root mycorrhizal colonization rate. AMF enhanced higher growth and nutrients for B. pilosa under the LG and HG substrates than under the FG substrate and under the Hets than under the Hetl. Moreover, AMF alleviated the limited supply of N for B. pilosa under all heterogeneous treatments. Furthermore, the response ratio LnRR of B. pilosa presented that the substrate gravel promoted the highest growth, N and P absorption than the substrate patchiness with M+ treatment, and the gravel content had a more effect on plant growth and nutrition as compared to the patch size. Overall, this study suggests that plant growth and nutrition regulated by AMF mainly depend on the substrate gravel content rather than the spatial patchiness in the heterogeneous karst habitat.
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Affiliation(s)
- Kaiping Shen
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Yuejun He
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Xinyang Xu
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Muhammad Umer
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Xiao Liu
- Forestry Survey and Planning Institute of Guizhou Province, Guiyang, China
| | - Tingting Xia
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Yun Guo
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
- College of Eco-Environmental Engineering, Guizhou Minzu University, Guiyang, China
| | - Bangli Wu
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Han Xu
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Lipeng Zang
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Lu Gao
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Min Jiao
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Xionggui Yang
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
| | - Jiawei Yan
- Forestry College, Research Center of Forest Ecology, Guizhou University, Guiyang, China
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Votta C, Fiorilli V, Haider I, Wang JY, Balestrini R, Petřík I, Tarkowská D, Novák O, Serikbayeva A, Bonfante P, Al‐Babili S, Lanfranco L. Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 111:1688-1700. [PMID: 35877598 PMCID: PMC9543690 DOI: 10.1111/tpj.15917] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 07/05/2022] [Accepted: 07/21/2022] [Indexed: 05/12/2023]
Abstract
The Oryza sativa (rice) carotenoid cleavage dioxygenase OsZAS was described to produce zaxinone, a plant growth-promoting apocarotenoid. A zas mutant line showed reduced arbuscular mycorrhizal (AM) colonization, but the mechanisms underlying this behavior are unknown. Here, we investigated how OsZAS and exogenous zaxinone treatment regulate mycorrhization. Micromolar exogenous supply of zaxinone rescued root growth but not the mycorrhizal defects of the zas mutant, and even reduced mycorrhization in wild-type and zas genotypes. The zas line did not display the increase in the level of strigolactones (SLs) that was observed in wild-type plants at 7 days post-inoculation with AM fungus. Moreover, exogenous treatment with the synthetic SL analog GR24 rescued the zas mutant mycorrhizal phenotype, indicating that the lower AM colonization rate of zas is caused by a deficiency in SLs at the early stages of the interaction, and indicating that during this phase OsZAS activity is required to induce SL production, possibly mediated by the Dwarf14-Like (D14L) signaling pathway. OsZAS is expressed in arbuscule-containing cells, and OsPT11prom::OsZAS transgenic lines, where OsZAS expression is driven by the OsPT11 promoter active in arbusculated cells, exhibit increased mycorrhization compared with the wild type. Overall, our results show that the genetic manipulation of OsZAS activity in planta leads to a different effect on AM symbiosis from that of exogenous zaxinone treatment, and demonstrate that OsZAS influences the extent of AM colonization, acting as a component of a regulatory network that involves SLs.
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Affiliation(s)
- Cristina Votta
- Department of Life Sciences and Systems BiologyUniversity of TurinTurin10125Italy
| | - Valentina Fiorilli
- Department of Life Sciences and Systems BiologyUniversity of TurinTurin10125Italy
| | - Imran Haider
- The BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE)King Abdullah University of Science and TechnologyThuwal23955Saudi Arabia
| | - Jian You Wang
- The BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE)King Abdullah University of Science and TechnologyThuwal23955Saudi Arabia
| | - Raffaella Balestrini
- National Research CouncilInstitute for Sustainable Plant ProtectionTurin10135Italy
| | - Ivan Petřík
- Laboratory of Growth Regulators, Faculty of SciencePalacký University and Institute of Experimental Botany, The Czech Academy of SciencesOlomouc78371Czech Republic
| | - Danuše Tarkowská
- Laboratory of Growth Regulators, Faculty of SciencePalacký University and Institute of Experimental Botany, The Czech Academy of SciencesOlomouc78371Czech Republic
| | - Ondřej Novák
- Laboratory of Growth Regulators, Faculty of SciencePalacký University and Institute of Experimental Botany, The Czech Academy of SciencesOlomouc78371Czech Republic
| | - Akmaral Serikbayeva
- The BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE)King Abdullah University of Science and TechnologyThuwal23955Saudi Arabia
| | - Paola Bonfante
- Department of Life Sciences and Systems BiologyUniversity of TurinTurin10125Italy
| | - Salim Al‐Babili
- The BioActives Lab, Center for Desert Agriculture (CDA), Biological and Environment Science and Engineering (BESE)King Abdullah University of Science and TechnologyThuwal23955Saudi Arabia
| | - Luisa Lanfranco
- Department of Life Sciences and Systems BiologyUniversity of TurinTurin10125Italy
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Jessup LH, Halloway AH, Mickelbart MV, McNickle GG. Information theory and plant ecology. OIKOS 2022. [DOI: 10.1111/oik.09352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Laura H. Jessup
- Dept of Forestry and Natural Resources, Purdue Univ. West Lafayette IN USA
- Dept of Ecological Sciences and Engineering, Purdue Univ. West Lafayette IN USA
| | - Abdel H. Halloway
- Dept of Botany and Plant Pathology, Purdue Univ. West Lafayette IN USA
- Purdue Center for Plant Biology, Purdue Univ. West Lafayette IN USA
| | - Michael V. Mickelbart
- Dept of Botany and Plant Pathology, Purdue Univ. West Lafayette IN USA
- Purdue Center for Plant Biology, Purdue Univ. West Lafayette IN USA
| | - Gordon G. McNickle
- Dept of Botany and Plant Pathology, Purdue Univ. West Lafayette IN USA
- Purdue Center for Plant Biology, Purdue Univ. West Lafayette IN USA
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Wheeldon CD, Hamon-Josse M, Lund H, Yoneyama K, Bennett T. Environmental strigolactone drives early growth responses to neighboring plants and soil volume in pea. Curr Biol 2022; 32:3593-3600.e3. [PMID: 35839764 PMCID: PMC9616727 DOI: 10.1016/j.cub.2022.06.063] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 04/28/2022] [Accepted: 06/21/2022] [Indexed: 11/16/2022]
Abstract
There has been a dramatic recent increase in the understanding of the mechanisms by which plants detect their neighbors,1 including by touch,2 reflected light,3 volatile organic chemicals, and root exudates.4,5 The importance of root exudates remains ill-defined because of confounding experimental variables6,7 and difficulties disentangling neighbor detection in shoot and roots.8-10 There is evidence that root exudates allow distinction between kin and non-kin neighbors,11-13 but identification of specific exudates that function in neighbor detection and/or kin recognition remain elusive.1 Strigolactones (SLs), which are exuded into the soil in significant quantities in flowering plants to promote recruitment of arbuscular mycorrhizal fungi (AMF),14 seem intuitive candidates to act as plant-plant signals, since they also act as hormones in plants,15-17 with dramatic effects on shoot growth18,19 and milder effects on root development.20 Here, using pea, we test whether SLs act as either cues or signals for neighbor detection. We show that peas detect neighbors early in the life cycle through their root systems, resulting in strong changes in shoot biomass and branching, and that this requires SL biosynthesis. We demonstrate that uptake and detection of SLs exuded by neighboring plants are needed for this early neighbor detection, and that plants that cannot exude SLs are outcompeted by neighboring plants and fail to adjust growth to their soil volume. We conclude that plants both exude SLs as signals to modulate neighbor growth and detect environmental SLs as a cue for neighbor presence; collectively, this allows plants to proactively adjust their shoot growth according to neighbor density.
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Affiliation(s)
- Cara D Wheeldon
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Maxime Hamon-Josse
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Hannah Lund
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Kaori Yoneyama
- Graduate School of Agriculture, Ehime University, Matsuyama, Japan; Japan Science and Technology, PRESTO, Kawaguchi, Japan
| | - Tom Bennett
- School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.
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Application of Indigenous Rhizospheric Microorganisms and Local Compost as Enhancers of Lettuce Growth, Development, and Salt Stress Tolerance. Microorganisms 2022; 10:microorganisms10081625. [PMID: 36014043 PMCID: PMC9416567 DOI: 10.3390/microorganisms10081625] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 08/01/2022] [Accepted: 08/06/2022] [Indexed: 11/16/2022] Open
Abstract
This study aimed to mitigate salt stress effects on lettuce by using native biostimulants (arbuscular mycorrhizal fungi (M, consortium), plant growth-promoting rhizobacteria (R, Z2, and Z4 strains), and compost (C)) applied alone or in combination under salinity stress (0, 50, and 100 mM NaCl). Physiological, biochemical, nutritional, mycorrhizal, growth, and soil characteristics were evaluated. Results revealed that growth and physiological traits were negatively affected by salinity. However, mycorrhizal colonization was enhanced under 100 mM NaCl after compost application. The applied biostimulants, particularly M and/or R improved the salinity tolerance of lettuce by increasing the dry biomass by 119% and 113% under 100 mM NaCl, respectively, for M and MR treatments. Similarly, MR enhanced stomatal conductance (47%), water content (260%), total chlorophyll (130%), phosphorus content (363%), and reduced the malondialdehyde (54%) and hydrogen peroxide (78%) compared to the control. Moreover, peroxidase activity (76%) and sugar content (36%) were enhanced by CM treatment, while protein (111%) and proline (104%) contents were significantly boosted by R treatment under 100 mM NaCl. Furthermore, glomalin content was enhanced by MR treatment under severe salinity. In conclusion, the applied biostimulants alone or in combination might help lettuce to tolerate salt stress and enhance its production in degraded areas.
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Moormann J, Heinemann B, Hildebrandt TM. News about amino acid metabolism in plant-microbe interactions. Trends Biochem Sci 2022; 47:839-850. [PMID: 35927139 DOI: 10.1016/j.tibs.2022.07.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 06/17/2022] [Accepted: 07/06/2022] [Indexed: 01/17/2023]
Abstract
Plants constantly come into contact with a diverse mix of pathogenic and beneficial microbes. The ability to distinguish between them and to respond appropriately is essential for plant health. Here we review recent progress in understanding the role of amino acid sensing, signaling, transport, and metabolism during plant-microbe interactions. Biochemical pathways converting individual amino acids into active compounds have recently been elucidated, and comprehensive large-scale approaches have brought amino acid sensors and transporters into focus. These findings show that plant central amino acid metabolism is closely interwoven with stress signaling and defense responses at various levels. The individual biochemical mechanisms and the interconnections between the different processes are just beginning to emerge and might serve as a foundation for new plant protection strategies.
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Affiliation(s)
- Jannis Moormann
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419 Hannover, Germany
| | - Björn Heinemann
- Institute for Plant Genetics, Department of Plant Proteomics, Leibniz University Hannover, Herrenhäuser Straße 2, 30419 Hannover, Germany
| | - Tatjana M Hildebrandt
- Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Zülpicher Straße 47a, 50674 Cologne, Germany.
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The Influence of Arbuscular Mycorrhizal Fungus Rhizophagus irregularis on the Growth and Quality of Processing Tomato (Lycopersicon esculentum Mill.) Seedlings. SUSTAINABILITY 2022. [DOI: 10.3390/su14159001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Tomato (Lycopersicon esculentum Mill.) is one of the most valuable horticultural crops, not only for its economic importance but also for its high nutritional value and sensory qualities. The arbuscular mycorrhiza (AM) fungus Rhizophagus irregularis can improve plant nutrient uptake and decrease seedling transplanting shock. Although R. irregularis is one of the most extensively studied AMF species, there is a paucity of data on the effects of this species on processing tomato seedlings produced in an aerated hydroponic float system. A greenhouse experiment with four treatments and three replications was established in a completely randomized design. The treatments contained the addition of 0, 40, 80, and 120 fungal spores per L of nutrient solution (control, AMF1, AMF2, and AMF3, respectively). Root colonization analysis proved that the maximum dose of applied AMF (AMF3) supported colonization to a large extent, succeeding 36.74%. In addition, the highest values of total dry weight (1.386 g), survival rate (94.79%), N content (3.376 mg per 100 g DW) and P content (0.497 mg per 100 g DW) were also observed under AMF3 treatment. In conclusion, the application of high doses of the AM fungus R. irregularis in nutrient solutions of float system leads to a substantial improvement in the quality and growth of processing tomato seedlings.
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Marro N, Grilli G, Soteras F, Caccia M, Longo S, Cofré N, Borda V, Burni M, Janoušková M, Urcelay C. The effects of arbuscular mycorrhizal fungal species and taxonomic groups on stressed and unstressed plants: a global meta-analysis. THE NEW PHYTOLOGIST 2022; 235:320-332. [PMID: 35302658 DOI: 10.1111/nph.18102] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Accepted: 03/08/2022] [Indexed: 05/25/2023]
Abstract
The great majority of plants gain access to soil nutrients and enhance their performance under stressful conditions through symbiosis with arbuscular mycorrhizal fungi (AMF). The benefits that AMF confer vary among species and taxonomic groups. However, a comparative analysis of the different benefits among AMF has not yet been performed. We conducted a global meta-analysis of recent studies testing the benefits of individual AMF species and main taxonomic groups in terms of plant performance (growth and nutrition). Separately, we examined AMF benefits to plants facing biotic (pathogens, parasites, and herbivores) and abiotic (drought, salinity, and heavy metals) stress. AMF had stronger positive effects on phosphorus nutrition than on plant growth and nitrogen nutrition and the effects on the growth of plants facing biotic and abiotic stresses were similarly positive. While the AMF taxonomic groups showed positive effects on plant performance either with or without stress, Diversisporales were the most beneficial to plants without stress and Gigasporales to plants facing biotic stress. Our results provide a comprehensive analysis of the benefits of different AMF species and taxonomic groups on plant performance and useful insights for their management and use as bio-inoculants for agriculture and restoration.
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Affiliation(s)
- Nicolás Marro
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
- Department of Mycorrhizal Symbioses, Institute of Botany of the Czech Academy of Sciences, Zámek 1, 25243, Průhonice, Czech Republic
| | - Gabriel Grilli
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Florencia Soteras
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Milena Caccia
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Silvana Longo
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Noelia Cofré
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Valentina Borda
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Magali Burni
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
| | - Martina Janoušková
- Department of Mycorrhizal Symbioses, Institute of Botany of the Czech Academy of Sciences, Zámek 1, 25243, Průhonice, Czech Republic
| | - Carlos Urcelay
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET, FCEFyN, Universidad Nacional de Córdoba, CC, 495, 5000, Córdoba, Argentina
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40
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Bennett AE, Groten K. The Costs and Benefits of Plant-Arbuscular Mycorrhizal Fungal Interactions. ANNUAL REVIEW OF PLANT BIOLOGY 2022; 73:649-672. [PMID: 35216519 DOI: 10.1146/annurev-arplant-102820-124504] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The symbiotic interaction between plants and arbuscular mycorrhizal (AM) fungi is often perceived as beneficial for both partners, though a large ecological literature highlights the context dependency of this interaction. Changes in abiotic variables, such as nutrient availability, can drive the interaction along the mutualism-parasitism continuum with variable outcomes for plant growth and fitness. However, AM fungi can benefit plants in more ways than improved phosphorus nutrition and plant growth. For example, AM fungi can promote abiotic and biotic stress tolerance even when considered parasitic from a nutrient provision perspective. Other than being obligate biotrophs, very little is known about the benefits AM fungi gain from plants. In this review, we utilize both molecular biology and ecological approaches to expand our understanding of the plant-AM fungal interaction across disciplines.
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Affiliation(s)
- Alison E Bennett
- Department of Evolution, Ecology, and Organismal Biology, Ohio State University, Columbus, Ohio, USA;
| | - Karin Groten
- Max Planck Institute for Chemical Ecology, Jena, Germany;
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Fiorilli V, Forgia M, de Saint Germain A, D’Arrigo G, Cornu D, Le Bris P, Al‐Babili S, Cardinale F, Prandi C, Spyrakis F, Boyer F, Turina M, Lanfranco L. A structural homologue of the plant receptor D14 mediates responses to strigolactones in the fungal phytopathogen Cryphonectria parasitica. THE NEW PHYTOLOGIST 2022; 234:1003-1017. [PMID: 35119708 PMCID: PMC9306968 DOI: 10.1111/nph.18013] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 01/26/2022] [Indexed: 05/27/2023]
Abstract
Strigolactones (SLs) are plant hormones and important signalling molecules required to promote arbuscular mycorrhizal (AM) symbiosis. While in plants an α/β-hydrolase, DWARF14 (D14), was shown to act as a receptor that binds and cleaves SLs, the fungal receptor for SLs is unknown. Since AM fungi are currently not genetically tractable, in this study, we used the fungal pathogen Cryphonectria parasitica, for which gene deletion protocols exist, as a model, as we have previously shown that it responds to SLs. By means of computational, biochemical and genetic analyses, we identified a D14 structural homologue, CpD14. Molecular homology modelling and docking support the prediction that CpD14 interacts with and hydrolyses SLs. The recombinant CpD14 protein shows α/β hydrolytic activity in vitro against the SLs synthetic analogue GR24; its enzymatic activity requires an intact Ser/His/Asp catalytic triad. CpD14 expression in the d14-1 loss-of-function Arabidopsis thaliana line did not rescue the plant mutant phenotype. However, gene inactivation by knockout homologous recombination reduced fungal sensitivity to SLs. These results indicate that CpD14 is involved in SLs responses in C. parasitica and strengthen the role of SLs as multifunctional molecules acting in plant-microbe interactions.
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Affiliation(s)
- Valentina Fiorilli
- Dipartimento di Scienze della Vita e Biologia dei SistemiUniversità di TorinoViale P.A. Mattioli 25Torino10125Italy
| | - Marco Forgia
- Istituto per la Protezione Sostenibile delle Piante – CNRStrada delle Cacce 7310135TorinoItaly
| | | | - Giulia D’Arrigo
- Dipartimento di Scienza e Tecnologia del FarmacoUniversità di Torinovia P. Giuria 1110125TorinoItaly
| | - David Cornu
- CEA, CNRSInstitute for Integrative Biology of the Cell (I2BC)Université Paris‐Saclay1 Avenue de la Terrasse91198Gif‐sur‐YvetteFrance
| | - Philippe Le Bris
- INRAE, AgroParisTechInstitut Jean‐Pierre Bourgin (IJPB)Université Paris‐Saclay78000VersaillesFrance
| | - Salim Al‐Babili
- Division of Biological and Environmental Science and EngineeringKing Abdullah University of Science and TechnologyThuwal23955‐6900Saudi Arabia
| | - Francesca Cardinale
- Dipartimento di Scienze Agrarie, Forestali e AlimentariUniversità di TorinoLargo Braccini 210095GrugliascoItaly
| | - Cristina Prandi
- Dipartimento di ChimicaUniversità di Torinovia P. Giuria 710125TorinoItaly
| | - Francesca Spyrakis
- Dipartimento di Scienza e Tecnologia del FarmacoUniversità di Torinovia P. Giuria 1110125TorinoItaly
| | - François‐Didier Boyer
- CNRSInstitut de Chimie des Substances NaturellesUPR 2301Université Paris‐Saclay1 Avenue de la Terrasse91198Gif‐sur‐YvetteFrance
| | - Massimo Turina
- Istituto per la Protezione Sostenibile delle Piante – CNRStrada delle Cacce 7310135TorinoItaly
| | - Luisa Lanfranco
- Dipartimento di Scienze della Vita e Biologia dei SistemiUniversità di TorinoViale P.A. Mattioli 25Torino10125Italy
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Jiang Y, Hu X, Yuan Y, Guo X, Chase MW, Ge S, Li J, Fu J, Li K, Hao M, Wang Y, Jiao Y, Jiang W, Jin X. The Gastrodia menghaiensis (Orchidaceae) genome provides new insights of orchid mycorrhizal interactions. BMC PLANT BIOLOGY 2022; 22:179. [PMID: 35392808 PMCID: PMC8988336 DOI: 10.1186/s12870-022-03573-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 04/01/2022] [Indexed: 06/01/2023]
Abstract
BACKGROUND To illustrate the molecular mechanism of mycoheterotrophic interactions between orchids and fungi, we assembled chromosome-level reference genome of Gastrodia menghaiensis (Orchidaceae) and analyzed the genomes of two species of Gastrodia. RESULTS Our analyses indicated that the genomes of Gastrodia are globally diminished in comparison to autotrophic orchids, even compared to Cuscuta (a plant parasite). Genes involved in arbuscular mycorrhizae colonization were found in genomes of Gastrodia, and many of the genes involved biological interaction between Gatrodia and symbiotic microbionts are more numerous than in photosynthetic orchids. The highly expressed genes for fatty acid and ammonium root transporters suggest that fungi receive material from orchids, although most raw materials flow from the fungi. Many nuclear genes (e.g. biosynthesis of aromatic amino acid L-tryptophan) supporting plastid functions are expanded compared to photosynthetic orchids, an indication of the importance of plastids even in totally mycoheterotrophic species. CONCLUSION Gastrodia menghaiensis has the smallest proteome thus far among angiosperms. Many of the genes involved biological interaction between Gatrodia and symbiotic microbionts are more numerous than in photosynthetic orchids.
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Affiliation(s)
- Yan Jiang
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Haidian, Beijing, 100093, China
| | - Xiaodi Hu
- Novogene Bioinformatics Institute, Beijing, 100083, China
| | - Yuan Yuan
- National Resource Center for Chinese Meteria Medica, Chinese Academy of Chinese Medical Sciences, Chaoyang, Beijing, 100700, China
| | - Xuelian Guo
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Haidian, Beijing, 100093, China
| | - Mark W Chase
- Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, Surrey, UK
- Department of Environment and Agriculture, Curtin University, Perth, WA, Australia
| | - Song Ge
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Haidian, Beijing, 100093, China
| | - Jianwu Li
- Xishuanbanan Tropical Botanical Gardens, Chinese Academy of Sciences, Menglun, Mengla, Yunnan, China
| | - Jinlong Fu
- Novogene Bioinformatics Institute, Beijing, 100083, China
| | - Kui Li
- Novogene Bioinformatics Institute, Beijing, 100083, China
| | - Meng Hao
- Novogene Bioinformatics Institute, Beijing, 100083, China
| | - Yiming Wang
- Novogene Bioinformatics Institute, Beijing, 100083, China
| | - Yuannian Jiao
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Haidian, Beijing, 100093, China
| | - Wenkai Jiang
- Novogene Bioinformatics Institute, Beijing, 100083, China
| | - Xiaohua Jin
- Institute of Botany, Chinese Academy of Sciences, Xiangshan, Haidian, Beijing, 100093, China.
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Gómez-Gallego T, Valderas A, van Tuinen D, Ferrol N. Impact of arbuscular mycorrhiza on maize P 1B-ATPases gene expression and ionome in copper-contaminated soils. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 234:113390. [PMID: 35278990 DOI: 10.1016/j.ecoenv.2022.113390] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 11/12/2021] [Accepted: 03/03/2022] [Indexed: 06/14/2023]
Abstract
Arbuscular mycorrhizal (AM) fungi, symbionts of most land plants, increase plant fitness in metal contaminated soils. To further understand the mechanisms of metal tolerance in the AM symbiosis, the expression patterns of the maize Heavy Metal ATPase (HMA) family members and the ionomes of non-mycorrhizal and mycorrhizal plants grown under different Cu supplies were examined. Expression of ZmHMA5a and ZmHMA5b, whose encoded proteins were predicted to be localized at the plasma membrane, was up-regulated by Cu in non-mycorrhizal roots and to a lower extent in mycorrhizal roots. Gene expression of the tonoplast ZmHMA3a and ZmHMA4 isoforms was up-regulated by Cu-toxicity in shoots and roots of mycorrhizal plants. AM mitigates the changes induced by Cu toxicity on the maize ionome, specially at the highest Cu soil concentration. Altogether these data suggest that in Cu-contaminated soils, AM increases expression of the HMA genes putatively encoding proteins involved in Cu detoxification and balances mineral nutrient uptake improving the nutritional status of the maize plants.
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Affiliation(s)
- Tamara Gómez-Gallego
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Ascensión Valderas
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Diederik van Tuinen
- INRAE/AgroSup/Université de Bourgogne UMR1347 Agroécologie, ERL CNRS, 6300 Dijon, France
| | - Nuria Ferrol
- Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain.
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Kaur S, Campbell BJ, Suseela V. Root metabolome of plant-arbuscular mycorrhizal symbiosis mirrors the mutualistic or parasitic mycorrhizal phenotype. THE NEW PHYTOLOGIST 2022; 234:672-687. [PMID: 35088406 DOI: 10.1111/nph.17994] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 12/31/2021] [Indexed: 06/14/2023]
Abstract
The symbiosis of arbuscular mycorrhizal fungi (AMF) with plants, the most ancient and widespread association, exhibits phenotypes that range from mutualism to parasitism. However, we still lack an understanding of the cellular-level mechanisms that differentiate and regulate these phenotypes. We assessed the modulation in growth parameters and root metabolome of two sorghum accessions inoculated with two AMF species (Rhizophagus irregularis, Gigaspora gigantea), alone and in a mixture under phosphorus (P) limiting conditions. Rhizophagus irregularis exhibited a mutualistic phenotype with increased P uptake and plant growth. This positive outcome was associated with a facilitatory metabolic response including higher abundance of organic acids and specialized metabolites critical to maintaining a functional symbiosis. However, G. gigantea exhibited a parasitic phenotype that led to plant growth depression and resulted in inhibitory plant metabolic responses including the higher abundance of p-hydroxyphenylacetaldoxime with antifungal properties. These findings suggest that the differential outcome of plant-AMF symbiosis could be regulated by or reflected in changes in the root metabolome that arises from the interaction of the plant species with the specific AMF species. A mutualistic symbiotic association prevailed when the host plants were exposed to a mixture of AMF. Our results provide a metabolome-level landscape of plant-AMF symbiosis and highlight the importance of the identity of both AMF and crop genotypes in facilitating a mutualistic AMF symbiosis.
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Affiliation(s)
- Sukhmanpreet Kaur
- Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, 29634, USA
| | - Barbara J Campbell
- Department of Biological Sciences, Clemson University, Clemson, SC, 29634, USA
| | - Vidya Suseela
- Department of Plant and Environmental Sciences, Clemson University, Clemson, SC, 29634, USA
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Fiorilli V, Maghrebi M, Novero M, Votta C, Mazzarella T, Buffoni B, Astolfi S, Vigani G. Arbuscular Mycorrhizal Symbiosis Differentially Affects the Nutritional Status of Two Durum Wheat Genotypes under Drought Conditions. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11060804. [PMID: 35336686 PMCID: PMC8954065 DOI: 10.3390/plants11060804] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 02/23/2022] [Accepted: 03/14/2022] [Indexed: 05/17/2023]
Abstract
Durum wheat is one of the most important agricultural crops, currently providing 18% of the daily intake of calories and 20% of daily protein intake for humans. However, being wheat that is cultivated in arid and semiarid areas, its productivity is threatened by drought stress, which is being exacerbated by climate change. Therefore, the identification of drought tolerant wheat genotypes is critical for increasing grain yield and also improving the capability of crops to uptake and assimilate nutrients, which are seriously affected by drought. This work aimed to determine the effect of arbuscular mycorrhizal fungi (AMF) on plant growth under normal and limited water availability in two durum wheat genotypes (Svevo and Etrusco). Furthermore, we investigated how the plant nutritional status responds to drought stress. We found that the response of Svevo and Etrusco to drought stress was differentially affected by AMF. Interestingly, we revealed that AMF positively affected sulfur homeostasis under drought conditions, mainly in the Svevo cultivar. The results provide a valuable indication that the identification of drought tolerant plants cannot ignore their nutrient use efficiency or the impact of other biotic soil components (i.e., AMF).
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Affiliation(s)
- Valentina Fiorilli
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Moez Maghrebi
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Mara Novero
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Cristina Votta
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Teresa Mazzarella
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Beatrice Buffoni
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
| | - Stefania Astolfi
- Department of Agricultural and Forestry Sciences (DAFNE), University of Tuscia, 01100 Viterbo, Italy;
| | - Gianpiero Vigani
- Department of Life Sciences and Systems Biology, Università degli Studi di Torino, 10124 Torino, Italy; (V.F.); (M.M.); (M.N.); (C.V.); (T.M.); (B.B.)
- Correspondence: ; Tel.: +39-0116706360
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Anandan A, Nagireddy R, Sabarinathan S, Bhatta BB, Mahender A, Vinothkumar M, Parameswaran C, Panneerselvam P, Subudhi H, Meher J, Bose LK, Ali J. Multi-trait association study identifies loci associated with tolerance of low phosphorus in Oryza sativa and its wild relatives. Sci Rep 2022; 12:4089. [PMID: 35260690 PMCID: PMC8904515 DOI: 10.1038/s41598-022-07781-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 02/16/2022] [Indexed: 11/26/2022] Open
Abstract
We studied variation in adaptive traits and genetic association to understand the low P responses, including the symbiotic association of arbuscular mycorrhizal (AM) fungal colonization in Oryza species (O. sativa, O. nivara, and O. rufipogon). In the present experiment, we performed the phenotypic variability of the morphometric and geometric traits for P deficiency tolerance and conducted the association studies in GLM and MLM methods. A positive association between the geometric trait of the top-view area and root traits suggested the possibility of exploring a non-destructive approach in screening genotypes under low P. The AMOVA revealed a higher proportion of variation among the individuals as they belonged to different species of Oryza and the NM value was 2.0, indicating possible gene flow between populations. A sub-cluster with superior-performing accessions had a higher proportion of landraces (42.85%), and O. rufipogon (33.3%) was differentiated by four Pup1-specific markers. Association mapping identified seven notable markers (RM259, RM297, RM30, RM6966, RM242, RM184, and PAP1) and six potential genotypes (IC459373, Chakhao Aumbi, AC100219, AC100062, Sekri, and Kumbhi Phou), which will be helpful in the marker-assisted breeding to improve rice for P-deprived condition. In addition, total root surface area becomes a single major trait that helps in P uptake under deficit P up to 33% than mycorrhizal colonization. Further, the phenotypic analysis of the morphometric and geometric trait variations and their interactions provides excellent potential for selecting donors for improving P-use efficiency. The identified potential candidate genes and markers offered new insights into our understanding of the molecular and physiological mechanisms driving PUE and improving grain yield under low-P conditions.
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Affiliation(s)
- Annamalai Anandan
- Crop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India.
| | - Ranjitkumar Nagireddy
- Crop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India
| | - Selvaraj Sabarinathan
- Crop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India
| | - Bishal Binaya Bhatta
- Crop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India.,Department of Plant Physiology, Orissa University of Agriculture and Technology, Bhubaneswar, Odisha, 751003, India
| | - Anumalla Mahender
- Rice Breeding Innovation Platform, International Rice Research Institute (IRRI), 4031, Los Baños, Laguna, Philippines
| | | | | | - Periyasamy Panneerselvam
- Crop Production Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India
| | - Hatanath Subudhi
- Crop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India
| | - Jitendriya Meher
- Crop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India
| | - Lotan Kumar Bose
- Crop Improvement Division, ICAR-National Rice Research Institute (NRRI), Cuttack, Odisha, 753006, India
| | - Jauhar Ali
- Rice Breeding Innovation Platform, International Rice Research Institute (IRRI), 4031, Los Baños, Laguna, Philippines.
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Hu XL, Zhang J, Kaundal R, Kataria R, Labbé JL, Mitchell JC, Tschaplinski TJ, Tuskan GA, Cheng ZM(M, Yang X. Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal symbiosis. HORTICULTURE RESEARCH 2022; 9:uhac043. [PMID: 35184190 PMCID: PMC8985099 DOI: 10.1093/hr/uhac043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 01/18/2022] [Indexed: 05/12/2023]
Abstract
Arbuscular mycorrhizal symbiosis (AMS) is widespread mutualistic association between plants and fungi, which plays an essential role in nutrient exchange, enhancement in plant stress resistance, development of host, and ecosystem sustainability. Previous studies have shown that plant small secreted proteins (SSPs) are involved in beneficial symbiotic interactions. However, the role of SSPs in the evolution of AMS has not been well studied yet. In this study, we performed computational analysis of SSPs in 60 plant species and identified three AMS-specific ortholog groups containing SSPs only from at least 30% of the AMS species in this study and three AMS-preferential ortholog groups containing SSPs from both AMS and non-AMS species, with AMS species containing significantly more SSPs than non-AMS species. We found that independent lineages of monocot and eudicot plants contained genes in the AMS-specific ortholog groups and had significant expansion in the AMS-preferential ortholog groups. Also, two AMS-preferential ortholog groups showed convergent changes, between monocot and eudicot species, in gene expression in response to arbuscular mycorrhizal fungus Rhizophagus irregularis. Furthermore, conserved cis-elements were identified in the promoter regions of the genes showing convergent gene expression. We found that the SSPs, and their closely related homologs, in each of three AMS-preferential ortholog groups, had some local variations in the protein structural alignment. We also identified genes co-expressed with the Populus trichocarpa SSP genes in the AMS-preferential ortholog groups. This first plant kingdom-wide analysis on SSP provides insights on plant-AMS convergent evolution with specific SSP gene expression and local diversification of protein structures.
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Affiliation(s)
- Xiao-Li Hu
- Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Jin Zhang
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, Zhejiang 311300, China
| | - Rakesh Kaundal
- Department of Plants, Soils and Climate, Utah State University, Logan, UT 84322, USA
| | - Raghav Kataria
- Department of Plants, Soils and Climate, Utah State University, Logan, UT 84322, USA
| | - Jesse L Labbé
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Julie C Mitchell
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Timothy J Tschaplinski
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Gerald A Tuskan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Zong-Ming (Max) Cheng
- Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
- College of Horticulture, Nanjing Agricultural University, Nanjing, Jiangsu 210095 China
| | - Xiaohan Yang
- Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
- The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
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48
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Darriaut R, Lailheugue V, Masneuf-Pomarède I, Marguerit E, Martins G, Compant S, Ballestra P, Upton S, Ollat N, Lauvergeat V. Grapevine rootstock and soil microbiome interactions: Keys for a resilient viticulture. HORTICULTURE RESEARCH 2022; 9:uhac019. [PMID: 35184168 PMCID: PMC8985100 DOI: 10.1093/hr/uhac019] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 12/18/2021] [Accepted: 01/17/2022] [Indexed: 05/10/2023]
Abstract
Soil microbiota has increasingly been shown to play an integral role in viticulture resilience. The emergence of new metagenomic and culturomic technologies has led to significant advances in the study of microbial biodiversity. In the agricultural sector, soil and plant microbiomes have been found to significantly improve resistance to environmental stressors and diseases, as well as influencing crop yields and fruit quality thus improving sustainability under shifting environments. Grapevines are usually cultivated as a scion grafted on rootstocks, which are selected according to pedoclimatic conditions and cultural practices, known as terroir. The rootstock connects the surrounding soil to the vine's aerial part and impacts scion growth and berry quality. Understanding rootstock and soil microbiome dynamics is a relevant and important field of study, which may be critical to improve viticulture sustainability and resilience. This review aims to highlight the relationship between grapevine roots and telluric microbiota diversity and activity. In addition, this review explores the concept of core microbiome regarding potential applications of soil microbiome engineering with the goal of enhancing grapevine adaptation to biotic and abiotic stress.
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Affiliation(s)
- Romain Darriaut
- EGFV, Univ. Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, F-33882, Villenave d'Ornon, France
| | - Vincent Lailheugue
- EGFV, Univ. Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, F-33882, Villenave d'Ornon, France
| | - Isabelle Masneuf-Pomarède
- Université de Bordeaux,
UMR Oenologie 1366, INRAE, Bordeaux INP, Bordeaux Sciences Agro, ISVV, Villenave d'Ornon, France
- Bordeaux Sciences Agro, 33170 Gradignan, France
| | - Elisa Marguerit
- EGFV, Univ. Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, F-33882, Villenave d'Ornon, France
| | - Guilherme Martins
- Université de Bordeaux,
UMR Oenologie 1366, INRAE, Bordeaux INP, Bordeaux Sciences Agro, ISVV, Villenave d'Ornon, France
- Bordeaux Sciences Agro, 33170 Gradignan, France
| | - Stéphane Compant
- AIT Austrian Institute of Technology, Center for Health and Bioresources, Bioresources Unit, Konrad Lorenz Straße 24, Tulln, A-3430, Austria
| | - Patricia Ballestra
- Université de Bordeaux,
UMR Oenologie 1366, INRAE, Bordeaux INP, Bordeaux Sciences Agro, ISVV, Villenave d'Ornon, France
| | | | - Nathalie Ollat
- EGFV, Univ. Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, F-33882, Villenave d'Ornon, France
| | - Virginie Lauvergeat
- EGFV, Univ. Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, F-33882, Villenave d'Ornon, France
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49
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McDonald TR, Rizvi MF, Ruiter BL, Roy R, Reinders A, Ward JM. Posttranslational regulation of transporters important for symbiotic interactions. PLANT PHYSIOLOGY 2022; 188:941-954. [PMID: 34850211 PMCID: PMC8825328 DOI: 10.1093/plphys/kiab544] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Accepted: 10/27/2021] [Indexed: 05/20/2023]
Abstract
Coordinated sharing of nutritional resources is a central feature of symbiotic interactions, and, despite the importance of this topic, many questions remain concerning the identification, activity, and regulation of transporter proteins involved. Recent progress in obtaining genome and transcriptome sequences for symbiotic organisms provides a wealth of information on plant, fungal, and bacterial transporters that can be applied to these questions. In this update, we focus on legume-rhizobia and mycorrhizal symbioses and how transporters at the symbiotic interfaces can be regulated at the protein level. We point out areas where more research is needed and ways that an understanding of transporter mechanism and energetics can focus hypotheses. Protein phosphorylation is a predominant mechanism of posttranslational regulation of transporters in general and at the symbiotic interface specifically. Other mechanisms of transporter regulation, such as protein-protein interaction, including transporter multimerization, polar localization, and regulation by pH and membrane potential are also important at the symbiotic interface. Most of the transporters that function in the symbiotic interface are members of transporter families; we bring in relevant information on posttranslational regulation within transporter families to help generate hypotheses for transporter regulation at the symbiotic interface.
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Affiliation(s)
- Tami R McDonald
- Department of Biology, St Catherine University, St Paul, Minnesota, USA
| | - Madeeha F Rizvi
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
| | - Bretton L Ruiter
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
| | - Rahul Roy
- Department of Biology, St Catherine University, St Paul, Minnesota, USA
| | - Anke Reinders
- College of Continuing and Professional Studies, University of Minnesota, St. Paul, Minnesota, USA
| | - John M Ward
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, Minnesota, USA
- Author for communication:
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50
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Groen SC, Joly-Lopez Z, Platts AE, Natividad M, Fresquez Z, Mauck WM, Quintana MR, Cabral CLU, Torres RO, Satija R, Purugganan MD, Henry A. Evolutionary systems biology reveals patterns of rice adaptation to drought-prone agro-ecosystems. THE PLANT CELL 2022; 34:759-783. [PMID: 34791424 PMCID: PMC8824591 DOI: 10.1093/plcell/koab275] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 11/02/2021] [Indexed: 05/24/2023]
Abstract
Rice (Oryza sativa) was domesticated around 10,000 years ago and has developed into a staple for half of humanity. The crop evolved and is currently grown in stably wet and intermittently dry agro-ecosystems, but patterns of adaptation to differences in water availability remain poorly understood. While previous field studies have evaluated plant developmental adaptations to water deficit, adaptive variation in functional and hydraulic components, particularly in relation to gene expression, has received less attention. Here, we take an evolutionary systems biology approach to characterize adaptive drought resistance traits across roots and shoots. We find that rice harbors heritable variation in molecular, physiological, and morphological traits that is linked to higher fitness under drought. We identify modules of co-expressed genes that are associated with adaptive drought avoidance and tolerance mechanisms. These expression modules showed evidence of polygenic adaptation in rice subgroups harboring accessions that evolved in drought-prone agro-ecosystems. Fitness-linked expression patterns allowed us to identify the drought-adaptive nature of optimizing photosynthesis and interactions with arbuscular mycorrhizal fungi. Taken together, our study provides an unprecedented, integrative view of rice adaptation to water-limited field conditions.
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Affiliation(s)
- Simon C Groen
- Author for correspondence: (S.C.G.), (M.D.P.), (A.H.)
| | | | | | - Mignon Natividad
- International Rice Research Institute, Los Baños, Laguna, Philippines, USA
| | - Zoë Fresquez
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, USA
| | | | | | - Carlo Leo U Cabral
- International Rice Research Institute, Los Baños, Laguna, Philippines, USA
| | - Rolando O Torres
- International Rice Research Institute, Los Baños, Laguna, Philippines, USA
| | - Rahul Satija
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, USA
- New York Genome Center, New York, USA
| | | | - Amelia Henry
- Author for correspondence: (S.C.G.), (M.D.P.), (A.H.)
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