Chemistry of Isotopes: Isotope chemistry has opened new areas of chemical physics, geochemistry, and molecular biology

Stable isotopic signature of cadmium in tracing the source, fate, and translocation of cadmium in soil: A review

Cadmium (Cd), one of the most severe environmental pollutants in soil, poses a great threat to food safety and human health. Understanding the potential sources, fate, and translocation of Cd in soil-plant systems can provide valuable information on Cd contamination and its environmental impacts. Stable Cd isotopic ratios (δ114/110Cd) can provide "fingerprint" information on the sources and fate of Cd in the soil environment. Here, we review the application of Cd isotopes in soil, including (i) the Cd isotopic signature of soil and anthropogenic sources, (ii) the interactions of Cd with soil constituents and associated Cd isotopic fractionation, and (iii) the translocation of Cd at soil-plant interfaces and inside plant bodies, which aims to provide an in-depth understanding of Cd transport and migration in soil and soil-plant systems. This review would help to improve the understanding and application of Cd isotopic techniques for tracing the potential sources and (bio-)geochemical cycling of Cd in soil environment.

Dual carbon and oxygen isotopes in Siberian tree rings as indicator of millennia sunshine duration changes

The current lack of information on past summer sunshine duration variability from annually resolved palaeoclimatological archives is hindering progress in the understanding and modelling of the earth climate system. We show that a combination of tree-ring carbon and oxygen isotopes from Siberia provides robust information on summer sunshine duration, which we use for an annual 1505-year reconstruction of July sunshine duration variability (1,5K-SIB-JSDR). We found that the Medieval maximum is 56 % higher than the average over 1505 years. Rapid and drastic decreases in sunshine duration up to 60 % correspond to major stratospheric volcanic eruptions. Grand Solar Minima and total sunspot numbers are also well preserved in the 1,5K-SIB-JSDR. Coherency with a global air temperature composite and spring Arctic Oscillation indicate that a large-scale climate signal is retained in our sunshine reconstruction.

Isotope effects on radical pair performance in cryptochrome: A new hypothesis for the evolution of animal migration: The quantum biology of migration

Mechanisms occurring at the atomic level are now known to drive processes essential for life, as revealed by quantum effects on biochemical reactions. Some macroscopic characteristics of organisms may thus show an atomic imprint, which may be transferred across organisms and affect their evolution. This possibility is considered here for the first time, with the aim of elucidating the appearance of an animal innovation with an unclear evolutionary origin: migratory behaviour. This trait may be mediated by a radical pair (RP) mechanism in the retinal flavoprotein cryptochrome, providing essential magnetic orientation for migration. Isotopes may affect the performance of quantum processes through their nuclear spin. Here, we consider a simple model and then apply the standard open quantum system approach to the spin dynamics of cryptochrome RP. We changed the spin quantum number (I) and g-factor of hydrogen and nitrogen isotopes to investigate their effect on RP's yield and magnetic sensitivity. Strong differences arose between isotopes with I = 1 and I = 1/2 in their contribution to cryptochrome magnetic sensitivity, particularly regarding Earth's magnetic field strengths (25-65 µT). In most cases, isotopic substitution improved RP's magnetic sensitivity. Migratory behaviour may thus have been favoured in animals with certain isotopic compositions of cryptochrome.

Magnetic isotope effects: a potential testing ground for quantum biology

One possible explanation for magnetosensing in biology, such as avian magnetoreception, is based on the spin dynamics of certain chemical reactions that involve radical pairs. Radical pairs have been suggested to also play a role in anesthesia, hyperactivity, neurogenesis, circadian clock rhythm, microtubule assembly, etc. It thus seems critical to probe the credibility of such models. One way to do so is through isotope effects with different nuclear spins. Here we briefly review the papers involving spin-related isotope effects in biology. We suggest studying isotope effects can be an interesting avenue for quantum biology.

Fatty acid isotopic composition in Atlantic pollock is not influenced by environmentally relevant dietary fat concentrations

The application of fatty acid (FA) isotopic analysis has great potential in elucidating food web structure, but it has not experienced the same wide-spread use as amino acid isotopic analyses. The failure to adopt FA isotopic methods is almost certainly linked to a lack of reliable information on trophic fractionation of FA, particularly in higher predators. In this work, we attempt to address this shortfall, through comparison of FA δ¹³C values in captive Atlantic pollock (Pollachius virens) liver and their known diets. Since catabolism is likely the main cause of fractionation and it may vary with dietary fat content, we investigated the impact of dietary fat concentration on isotopic discrimination in FA. We fed Atlantic pollock three formulated diets with similar FA isotopic compositions but different fat concentrations (5-9% of diet), representative of the range found in natural prey, for 20 weeks. At the conclusion of the study, δ¹³C values of liver FA were very similar to the FA within the corresponding diets, with most discrimination factors < 1. For all FA except 22:6n-3, dietary fat had no effect on discrimination factors. Only for 22:6n-3 did fish fed the highest fat diet have lower δ¹³C values than the diet consumed. Thus, these FA-specific discrimination factors can be applied to evaluate diets in marine fish consuming natural diets and will serve as additional and valuable biomarkers in fish feeding ecology.

Pyisotopomer: A Python package for obtaining intramolecular isotope ratio differences from mass spectrometric analysis of nitrous oxide isotopocules

RATIONALE

Obtaining nitrous oxide isotopocule measurements with isotope ratio mass spectrometry (IRMS) involves analyzing the ion current ratios of the nitrous oxide parent ion (N₂ O⁺ ) as well as those of the NO⁺ fragment ion. The data analysis requires correcting for "scrambling" in the ion source, whereby the NO⁺ fragment ion obtains the outer N atom from the N₂ O molecule. While descriptions exist for this correction, and interlaboratory intercalibration efforts have been made, there has yet to be published a package of code for implementing isotopomer calibrations.

METHODS

We developed a user-friendly Python package (pyisotopomer) to determine two coefficients (γ and κ) that describe scrambling in the IRMS ion source, and then used this calibration to obtain intramolecular isotope deltas in N₂ O samples.

RESULTS

With two appropriate reference materials, γ and κ can be determined robustly and accurately for a given IRMS system. An additional third reference material is needed to define the zero-point of the delta scale. We show that IRMS scrambling behavior can vary with time, necessitating regular calibrations. Finally, we present an intercalibration between two IRMS laboratories, using pyisotopomer to calculate γ and κ, and to obtain intramolecular N₂ O isotope deltas in lake water unknowns.

CONCLUSIONS

Given these considerations, we discuss how to use pyisotopomer to obtain high-quality N₂ O isotopocule data from IRMS systems, including the use of appropriate reference materials and frequency of calibration.

Equilibrium isotope fractionation factors of H exchange between steam and soil clay fractions

RATIONALE

Steam equilibration overcomes the problem of the traditional measurements of H isotope compositions, which leave an arbitrary amount of adsorbed water in the sample, by controlling for the entire exchangeable H pool, including adsorbed water and hydroxyl-H. However, the use of steam equilibration to determine nonexchangeable stable H isotope compositions in environmental media (expressed as δ² H_n values) by mathematically eliminating the influence of exchangeable H after sample equilibration with waters of known H-isotopic composition requires the knowledge of the equilibrium isotope fractionation factor between steam-H and exchangeable H of the sample (α_ex-w ), which is frequently unknown.

METHODS

We developed a new method to determine the α_ex-w values for clay minerals, topsoil clay fractions, and mica by manipulating the contributions of exchangeable H to the total H pool via different degrees of post-equilibration sample drying. We measured the δ² H values of steam-equilibrated mineral and soil samples using elemental analyzer-pyrolysis-isotope ratio mass spectrometry.

RESULTS

The α_ex-w values of seven clay minerals ranged from 1.071 to 1.140, and those of 19 topsoil clay fractions ranged from 0.885 to 1.216. The α_ex-w value of USGS57 biotite, USGS58 muscovite, and of cellulose was 0.965, 0.871, and 1.175, respectively. The method did not work for kaolinite, because its small exchangeable H pool did not respond to the selected drying conditions. Structurally different mineral groups such as two- and three-layer clay minerals or mica showed systematically different α_ex-w values. The α_ex-w value of the topsoil clay fractions correlated with the soil clay content (r = 0.63, P = 0.004), the local mean annual temperature (r = 0.68, P = 0.001), and the δ² H values of local precipitation (r = 0.72, P < 0.001), likely to reflect the different clay mineralogy under different weathering regimes.

CONCLUSIONS

Our new α_ex-w determination method yielded realistic results in line with the few previously published values for cellulose. The determined α_ex-w values were similar to the widely assumed values of 1.00-1.08 in the literature, suggesting that the adoption of one of these values in steam equilibration approaches is appropriate.

Altered Mechanisms for Acid-Catalyzed RNA Cleavage and Isomerization Reactions Models

RNA strand cleavage by 2'-O-transphosphorylation is catalyzed not only by numerous nucleolytic RNA enzymes (ribozymes) but also by hydroxide or hydronium ions. In experiments, both cleavage of the 5'-linked nucleoside and isomerization between 3',5'- and 2',5'-phosphodiesters occur under acidic conditions, while only the cleavage reaction is observed under basic conditions. An ab initio path-integral approach for simulating kinetic isotope effects is used to reveal the reaction mechanisms for RNA cleavage and isomerization reactions under acidic conditions. Moreover, the proposed mechanisms can also be combined through the experimental pH-rate profiles.

Isotope Exchange-Based 18F-Labeling Methods

¹⁸F-Labeling methods for the preparation of ¹⁸F-labeled molecular probes can be classified into electrophilic fluorination, nucleophilic fluorination, metal-F coordination, and ¹⁸F/¹⁹F isotope exchange. Isotope exchange-based ¹⁸F-labeling methods demonstrate mild conditions featuring water resistance and facile high-performance liquid chromatography-free purification in direct ¹⁸F-labeling of substrates. This paper systematically reviews isotope exchange-based ¹⁸F-labeling methods sorted by the adjacent atom bonding with F, i.e., carbon and noncarbon atoms (Si, B, P, S, Ga, Fe, etc.). The respective isotope exchange mechanism, radiolabeling condition, radiochemical yield, molar activity, and stability of the ¹⁸F-product are mainly discussed for each isotope exchange-based ¹⁸F-labeling method as well as the cutting-edge application of the corresponding ¹⁸F-labeled molecular probes.

Magnetic field effects in biology from the perspective of the radical pair mechanism

Hundreds of studies have found that weak magnetic fields can significantly influence various biological systems. However, the underlying mechanisms behind these phenomena remain elusive. Remarkably, the magnetic energies implicated in these effects are much smaller than thermal energies. Here, we review these observations, and we suggest an explanation based on the radical pair mechanism, which involves the quantum dynamics of the electron and nuclear spins of transient radical molecules. While the radical pair mechanism has been studied in detail in the context of avian magnetoreception, the studies reviewed here show that magnetosensitivity is widespread throughout biology. We review magnetic field effects on various physiological functions, discussing static, hypomagnetic and oscillating magnetic fields, as well as isotope effects. We then review the radical pair mechanism as a potential unifying model for the described magnetic field effects, and we discuss plausible candidate molecules for the radical pairs. We review recent studies proposing that the radical pair mechanism provides explanations for isotope effects in xenon anaesthesia and lithium treatment of hyperactivity, magnetic field effects on the circadian clock, and hypomagnetic field effects on neurogenesis and microtubule assembly. We conclude by discussing future lines of investigation in this exciting new area of quantum biology.

Stable Isotope Fractionation of Metals and Metalloids in Plants: A Review

This work critically reviews stable isotope fractionation of essential (B, Mg, K, Ca, Fe, Ni, Cu, Zn, Mo), beneficial (Si), and non-essential (Cd, Tl) metals and metalloids in plants. The review (i) provides basic principles and methodologies for non-traditional isotope analyses, (ii) compiles isotope fractionation for uptake and translocation for each element and connects them to physiological processes, and (iii) interlinks knowledge from different elements to identify common and contrasting drivers of isotope fractionation. Different biological and physico-chemical processes drive isotope fractionation in plants. During uptake, Ca and Mg fractionate through root apoplast adsorption, Si through diffusion during membrane passage, Fe and Cu through reduction prior to membrane transport in strategy I plants, and Zn, Cu, and Cd through membrane transport. During translocation and utilization, isotopes fractionate through precipitation into insoluble forms, such as phytoliths (Si) or oxalate (Ca), structural binding to cell walls (Ca), and membrane transport and binding to soluble organic ligands (Zn, Cd). These processes can lead to similar (Cu, Fe) and opposing (Ca vs. Mg, Zn vs. Cd) isotope fractionation patterns of chemically similar elements in plants. Isotope fractionation in plants is influenced by biotic factors, such as phenological stages and plant genetics, as well as abiotic factors. Different nutrient supply induced shifts in isotope fractionation patterns for Mg, Cu, and Zn, suggesting that isotope process tracing can be used as a tool to detect and quantify different uptake pathways in response to abiotic stresses. However, the interpretation of isotope fractionation in plants is challenging because many isotope fractionation factors associated with specific processes are unknown and experiments are often exploratory. To overcome these limitations, fundamental geochemical research should expand the database of isotope fractionation factors and disentangle kinetic and equilibrium fractionation. In addition, plant growth studies should further shift toward hypothesis-driven experiments, for example, by integrating contrasting nutrient supplies, using established model plants, genetic approaches, and by combining isotope analyses with complementary speciation techniques. To fully exploit the potential of isotope process tracing in plants, the interdisciplinary expertise of plant and isotope geochemical scientists is required.

Catalytic asymmetric synthesis of enantioenriched α-deuterated pyrrolidine derivatives

The recent promising applications of deuterium-labeled pharmaceutical compounds have led to an urgent need for the efficient synthetic methodologies that site-specifically incorporate a deuterium atom into bioactive molecules. Nevertheless, precisely building a deuterium-containing stereogenic center, which meets the requirement for optimizing the absorption, distribution, metabolism, excretion and toxicity (ADMET) properties of chiral drug candidates, remains a significant challenge in organic synthesis. Herein, a catalytic asymmetric strategy combining H/D exchange (H/D-Ex) and azomethine ylide-involved 1,3-dipolar cycloaddition (1,3-DC) was developed for the construction of biologically important enantioenriched α-deuterated pyrrolidine derivatives in good yields with excellent stereoselectivities and uniformly high levels of deuterium incorporation. Directly converting glycine-derived aldimine esters into the deuterated counterparts with D₂O via Cu(i)-catalyzed H/D-Ex, and the subsequent thermodynamically/kinetically favored cleavage of the α-C-H bond rather than the α-C-D bond to generate the key N-metallated α-deuterated azomethine ylide species for the ensuing 1,3-DC are crucial to the success of α-deuterated chiral pyrrolidine synthesis. The current protocol exhibits remarkable features, such as readily available substrates, inexpensive and safe deuterium source, mild reaction conditions, and easy manipulation. Notably, the synthetic utility of a reversed 1,3-DC/[H/D-Ex] protocol has been demonstrated by catalytic asymmetric synthesis of deuterium-labelled MDM2 antagonist idasanutlin (RG7388) with high deuterium incorporation.

Oxygen Isotopic Composition of U3O8 Synthesized From U Metal, Uranyl Nitrate Hydrate, and UO3 as a Signature for Nuclear Forensics

Triuranium octoxide (U₃O₈) is one of the main compounds in the nuclear fuel cycle. As such, identifying its processing parameters that control the oxygen isotopic composition could be developed as a new signature for nuclear forensic investigation. This study investigated the effect of different synthesis conditions such as calcination time, temperature, and cooling rates on the final δ¹⁸O values of U₃O₈, produced from uranium metal, uranyl nitrate hydrate, and uranium trioxide as starting materials. The results showed that δ¹⁸O of U₃O₈ is independent of the above-listed starting materials. δ¹⁸O values of 10 synthetic U₃O₈ were similar (9.35 ± 0.46‰) and did not change as a function of calcination time or calcination temperature. We showed that the cooling rate of U₃O₈ at the end of the synthesis process determines the final oxygen isotope composition, yielding a significant isotope effect on the order of 30‰. Experiments with two isotopically spiked 10 M HNO₃, with a difference of δ¹⁸O ∼75‰, show that no memory of the starting solution oxygen isotope signature is expressed in the final U₃O₈ product. We suggest that the interaction with atmospheric oxygen is the main process parameter that controls the δ¹⁸O value in U₃O₈. The uranium mass effect, the tendency of uranium ions to preferentially incorporate ¹⁶O, is expressed during the solid-gas oxygen exchange, which occurs throughout cooling of the system.

Heavy-Atom Kinetic Isotope Effects: Primary Interest or Zero Point?

Chemists have many options for elucidating reaction mechanisms. Global kinetic analysis and classic transition-state probes (e.g., LFERs, Eyring) inevitably form the cornerstone of any strategy, yet their application to increasingly sophisticated synthetic methodologies often leads to a wide range of indistinguishable mechanistic proposals. Computational chemistry provides powerful tools for narrowing the field in such cases, yet wholly simulated mechanisms must be interpreted with great caution. Heavy-atom kinetic isotope effects (KIEs) offer an exquisite but underutilized method for reconciling the two approaches, anchoring the theoretician in the world of calculable observables and providing the experimentalist with atomistic insights. This Perspective provides a personal outlook on this synergy. It surveys the computation of heavy-atom KIEs and their measurement by NMR spectroscopy, discusses recent case studies, highlights the intellectual reward that lies in alignment of experiment and theory, and reflects on the changes required in chemical education in the area.

Oxygen Kinetic Isotope Effects in the Thermal Decomposition and Reduction of Ammonium Diuranate

Oxygen stable isotopes in uranium oxides processed through the nuclear fuel cycle may have the potential to provide information about a material's origin and processing history. However, a more thorough understanding of the fractionating processes governing the formation of signatures in real-world samples is still needed. In this study, laboratory synthesis of uranium oxides modeled after industrial nuclear fuel fabrication was performed to follow the isotope fractionation during thermal decomposition and reduction of ammonium diuranate (ADU). Synthesis of ADU occurred using a gaseous NH₃ route, followed by thermal decomposition in a dry nitrogen atmosphere at 400, 600, and 800 °C. The kinetic impact of heating ramp rates on isotope effects was explored by ramping to each decomposition temperature at 2, 20, and 200 °C min^-1. In addition, ADU was reduced using direct (ramped to 600 °C in a hydrogen atmosphere) and indirect (thermally decomposed to U₃O₈ at 600 °C, then exposed to a hydrogen atmosphere) routes. The bulk oxygen isotope composition of ADU (δ¹⁸O = -16 ± 1‰) was very closely related to precipitation water (δ¹⁸O = -15.6‰). The solid products of thermal decomposition using ramp rates of 2 and 20 °C min^-1 had statistically indistinguishable oxygen isotope compositions at each decomposition temperature, with increasing δ¹⁸O values in the transition from ADU to UO₃ at 400 °C (δ¹⁸O_UO3 - δ¹⁸O_ADU = 12.3‰) and the transition from UO₃ to U₃O₈ at 600 °C (δ¹⁸O_U3O8 - δ¹⁸O_UO3 = 2.8‰). An enrichment of ¹⁸O attributable to water volatilization was observed in the low temperature (400 °C) product of thermal decomposition using a 200 °C min^-1 ramp rate (δ¹⁸O_UO3 - δ¹⁸O_ADU = 9.2‰). Above 400 °C, no additional fractionation was observed as UO₃ decomposed to U₃O₈ with the rapid heating rate. Indirect reduction of ADU produced UO₂ with a δ¹⁸O value 19.1‰ greater than the precipitate and 4.0‰ greater than the intermediate U₃O₈. Direct reduction of ADU at 600 °C in a hydrogen atmosphere resulted in the production of U₄O₉ with a δ¹⁸O value 17.1‰ greater than the precipitate. Except when a 200 °C min^-1 ramp rate is employed, the results of both thermal decomposition and reduction show a consistent preferential enrichment of ¹⁸O as oxygen is removed from the original precipitate. Hence, the calcination and reduction reactions leading to the production of UO₂ will yield unique oxygen isotope fractionations based on process parameters including heating rate and decomposition temperature.

Variable thermoregulation of Late Cretaceous dinosaurs inferred by clumped isotope analysis of fossilized eggshell carbonates

The thermal physiology of non-avian dinosaurs, especially the endothermic/ectothermic nature of their metabolism, inferred indirectly using body mass, biophysical modelling, bone histology and growth rate, has long been a matter of debate. Clumped isotope thermometry, based on the thermodynamically driven preference of ¹³C-¹⁸O bond in carbonate minerals of fossilized eggshells, yields temperature of egg formation in the oviduct and can delineate the nature of thermoregulation of some extinct dinosaur taxa. In the present study, the clumped isotope thermometry was applied to the eggshells of a few species of modern birds and reptiles to show that it is possible to obtain the body temperatures of these species in most of the cases. We then used this method to the fossil eggshells of Late Cretaceous sauropods and theropods recovered from western and central India. The estimated body temperatures varied between 29 °C and 46 °C, with an overall average of 37 °C, significantly higher than the environmental temperature (about 25 °C) of this region during the Late Cretaceous. The results also show that the theropod species with low body masses (~800 kg) had high body temperature (~38 °C), while some gigantic (~20000 kg) sauropods had low body temperatures that were comparable to or slightly higher than the environmental temperature. Our analyses suggest that these Late Cretaceous giant species were endowed with a capacity of variable thermoregulation to control their body temperature.

Mechanistic Dichotomy in Bacterial Trichloroethene Dechlorination Revealed by Carbon and Chlorine Isotope Effects

Tetrachloroethene (PCE) and trichloroethene (TCE) are significant groundwater contaminants. Microbial reductive dehalogenation at contaminated sites can produce nontoxic ethene but often stops at toxic cis-1,2-dichloroethene ( cis-DCE) or vinyl chloride (VC). The magnitude of carbon relative to chlorine isotope effects (as expressed by Λ_C/Cl, the slope of δ¹³C versus δ³⁷Cl regressions) was recently recognized to reveal different reduction mechanisms with vitamin B₁₂ as a model reactant for reductive dehalogenase activity. Large Λ_C/Cl values for cis-DCE reflected cob(I)alamin addition followed by protonation, whereas smaller Λ_C/Cl values for PCE evidenced cob(I)alamin addition followed by Cl^- elimination. This study addressed dehalogenation in actual microorganisms and observed identical large Λ_C/Cl values for cis-DCE (Λ_C/Cl = 10.0 to 17.8) that contrasted with identical smaller Λ_C/Cl for TCE and PCE (Λ_C/Cl = 2.3 to 3.8). For TCE, the trend of small Λ_C/Cl could even be reversed when mixed cultures were precultivated on VC or DCEs and subsequently confronted with TCE (Λ_C/Cl = 9.0 to 18.2). This observation provides explicit evidence that substrate adaptation must have selected for reductive dehalogenases with different mechanistic motifs. The patterns of Λ_C/Cl are consistent with practically all studies published to date, while the difference in reaction mechanisms offers a potential answer to the long-standing question of why bioremediation frequently stalls at cis-DCE.

Isotopic determination with molecular emission using laser-induced breakdown spectroscopy and laser-induced radical fluorescence

Molecular emission can be used for isotopic analysis in laser-induced breakdown spectroscopy (LIBS) due to its large isotopic shift. However, spectral weakness and interference have become the main flaws in molecular isotopic analysis, causing deterioration of quantitative accuracy and sensitivity. Here, to overcome these problems, laser-induced radical fluorescence (LIRF) was applied to enhance the molecular spectra and eliminate the spectral interference. The root mean square errors of cross validation (RMSECVs) of boron and carbon isotopes (¹¹BO, ¹⁰BO, ¹²CN, and ¹³CN) improved to 2.632, 5.721, 5.990, and 1.543 at.%, as compared with 16.96, 35.79, 57.10, and 13.89 at.%, respectively, obtained in the case without LIRF. The limits of detection (LoDs) of ¹¹BO, ¹⁰BO, ¹²CN, and ¹³CN were 0.9858, 0.8470, 1.606, and 1.193 at.%, respectively. This work demonstrates the feasibility of LIBS-LIRF to achieve isotopic determination with high accuracy and sensitivity.

Chitosan-graft-benzo-15-crown-5-ether/PVA Blend Membrane with Sponge-Like Pores for Lithium Isotope Adsorptive Separation

Crown ether exhibits a high separation coefficient for lithium isotope separation owing to its precise size selectivity to cations. A crown ether-based solid-liquid extraction method for the lithium isotope separation with a high extraction efficiency is regarded as a valid alternative to the classic liquid-liquid method. A chitosan-graft-benzo-15-crown-5-ether (CTS-g-B15C5)/polyvinyl alcohol (PVA) porous blend membrane for lithium isotope adsorptive separation was fabricated by immersion-precipitation-phase inversion. Results indicated that the finger-like structure of the blend membrane was replaced gradually by a sponge-like structure with the increase of the CTS-g-B15C5 concentration from 20 to 50 wt %. Meanwhile, the porosity and mechanical strength of the blend membrane slightly decreased from 76.9% and 2.68 MPa to 72.5% and 2.02 MPa, respectively, whereas the average pore size increased from 0.33 to 0.73 μm. The obtained CTS-g-B15C5/PVA (50/50 wt/wt) blend membrane exhibited a sponge-like asymmetrical gradient structure and good mechanical strength and used for the solid-liquid extraction experiment. It is found that the distribution coefficient increased from 13.50 to 49.33, and the single-stage separation factor increased from 1.008 to 1.046 with the immobilization amount of crown ether from 1.07 to 2.60 mmol·g^-1. It also meets the acceptable separation factor of 1.03 in a large scale of lithium isotope separation. In addition, ⁶Li and ⁷Li were enriched in the solid or membrane phase and the aqueous phase, respectively. In summary, the blend membrane has great potential applications in the development of green and highly efficient membrane chromatography for lithium isotope separation.

High-precision determination of lithium and magnesium isotopes utilising single column separation and multi-collector inductively coupled plasma mass spectrometry

RATIONALE

Li and Mg isotopes are increasingly used as a combined tool within the geosciences. However, established methods require separate sample purification protocols utilising several column separation procedures. This study presents a single-step cation-exchange method for quantitative separation of trace levels of Li and Mg from multiple sample matrices.

METHODS

The column method utilises the macro-porous AGMP-50 resin and a high-aspect ratio column, allowing quantitative separation of Li and Mg from natural waters, sediments, rocks and carbonate matrices following the same elution protocol. High-precision isotope determination was conducted by multi-collector inductively coupled plasma mass spectrometry (MC-ICPMS) on the Thermo Scientific™ NEPTUNE Plus™ fitted with 10¹³  Ω amplifiers which allow accurate and precise measurements at ion beams ≤0.51 V.

RESULTS

Sub-nanogram Li samples (0.3-0.5 ng) were regularly separated (yielding Mg masses of 1-70 μg) using the presented column method. The total sample consumption during isotopic analysis is <0.5 ng Li and <115 ng Mg with long-term external 2σ precisions of ±0.39‰ for δ⁷ Li and ±0.07‰ for δ²⁶ Mg. The results for geological reference standards and seawater analysed by our method are in excellent agreement with published values despite the order of magnitude lower sample consumption.

CONCLUSIONS

The possibility of eluting small sample masses and the low analytical sample consumption make this method ideal for samples of limited mass or low Li concentration, such as foraminifera, mineral separates or dilute river waters.

Review of computer simulations of isotope effects on biochemical reactions: From the Bigeleisen equation to Feynman's path integral

Enzymatic reactions are integral components in many biological functions and malfunctions. The iconic structure of each reaction path for elucidating the reaction mechanism in details is the molecular structure of the rate-limiting transition state (RLTS). But RLTS is very hard to get caught or to get visualized by experimentalists. In spite of the lack of explicit molecular structure of the RLTS in experiment, we still can trace out the RLTS unique "fingerprints" by measuring the isotope effects on the reaction rate. This set of "fingerprints" is considered as a most direct probe of RLTS. By contrast, for computer simulations, oftentimes molecular structures of a number of TS can be precisely visualized on computer screen, however, theoreticians are not sure which TS is the actual rate-limiting one. As a result, this is an excellent stage setting for a perfect "marriage" between experiment and theory for determining the structure of RLTS, along with the reaction mechanism, i.e., experimentalists are responsible for "fingerprinting", whereas theoreticians are responsible for providing candidates that match the "fingerprints". In this Review, the origin of isotope effects on a chemical reaction is discussed from the perspectives of classical and quantum worlds, respectively (e.g., the origins of the inverse kinetic isotope effects and all the equilibrium isotope effects are purely from quantum). The conventional Bigeleisen equation for isotope effect calculations, as well as its refined version in the framework of Feynman's path integral and Kleinert's variational perturbation (KP) theory for systematically incorporating anharmonicity and (non-parabolic) quantum tunneling, are also presented. In addition, the outstanding interplay between theory and experiment for successfully deducing the RLTS structures and the reaction mechanisms is demonstrated by applications on biochemical reactions, namely models of bacterial squalene-to-hopene polycyclization and RNA 2'-O-transphosphorylation. For all these applications, we used our recently-developed path-integral method based on the KP theory, called automated integration-free path-integral (AIF-PI) method, to perform ab initio path-integral calculations of isotope effects. As opposed to the conventional path-integral molecular dynamics (PIMD) and Monte Carlo (PIMC) simulations, values calculated from our AIF-PI path-integral method can be as precise as (not as accurate as) the numerical precision of the computing machine. Lastly, comments are made on the general challenges in theoretical modeling of candidates matching the experimental "fingerprints" of RLTS. This article is part of a Special Issue entitled: Enzyme Transition States from Theory and Experiment.

Hydrogen isotope measurement of bird feather keratin, one laboratory's response to evolving methodologies

Hydrogen in organic tissue resides in a complex mixture of molecular contexts. Some hydrogen, called non-exchangeable (H(non)), is strongly bound, and its isotopic ratio is fixed when the tissue is synthesized. Other pools of hydrogen, called exchangeable hydrogen (H(ex)), constantly exchange with ambient water vapor. The measurement of the δ(2)H(non) in organic tissues such as hair or feather therefore requires an analytical process that accounts for exchangeable hydrogen. In this study, swan feather and sheep wool keratin were used to test the effects of sample drying and capsule closure on the measurement of δ(2)H(non) values, and the rate of back-reaction with ambient water vapor. Homogenous feather or wool keratins were also calibrated at room temperature for use as control standards to correct for the effects of exchangeable hydrogen on feathers. Total δ(2)H values of both feather and wool samples showed large changes throughout the first ∼6 h of drying. Desiccant plus low vacuum seems to be more effective than room temperature vacuum pumping for drying samples. The degree of capsule closure affects exchangeable hydrogen equilibration and drying, with closed capsules responding more slowly. Using one control keratin standard to correct for the δ(2)H(ex) value for a batch of samples leads to internally consistent δ(2)H(non) values for other calibrated keratins run as unknowns. When placed in the context of other recent improvements in the measurement of keratin δ(2)H(non) values, we make recommendations for sample handing, data calibration and the reporting of results.

Lead isotope ratios in bone ash of blesbok (Damaliscus pygargus phillipsi): a means of screening for the accumulation of contaminants from uraniferous rocks

This study was done to determine whether blesbok (Damaliscus pygargus phillipsi) from the Krugersdorp Game Reserve (KGR) in Gauteng Province, South Africa have higher concentrations of (238)U and higher (206)Pb/(204)Pb and (207)Pb/(204)Pb ratios in their bone ash than blesbok from a nearby control reserve that is not exposed to mine water and has no outcrops of uraniferous rocks. Eight blesbok females from the KGR and seven from the control site, all killed with a brain shot, were used. A Thermo X-series 2 quadrupole ICPMS was used to measure the concentrations of (238)U and lead and a Nu Instruments NuPlasma HR MC-ICP-MS to measure the lead isotope ratios in the tibial ash from each animal. KGR blesbok had higher mean concentrations of (238)U (P = 0.02) and ratios of (206)Pb/(204)Pb and (207)Pb/(204)Pb (P < 0.00001) than the control blesbok. The probability of rejecting the false null hypothesis of no difference in the (206)Pb/(204)Pb or (207)Pb/(204)Pb ratios between KGR and control reserve animals (the power of the test) was 0.999. The blesbok from the KGR accumulated contaminants from an uraniferous environment. The (206)Pb/(204)Pb and (207)Pb/(204)Pb ratios in tibial ash proved effective in confirming accumulation of contaminants from uraniferous rocks.

Carbon and hydrogen isotopic composition of methane and C2+ alkanes in electrical spark discharge: implications for identifying sources of hydrocarbons in terrestrial and extraterrestrial settings

The low-molecular-weight alkanes--methane, ethane, propane, and butane--are found in a wide range of terrestrial and extraterrestrial settings. The development of robust criteria for distinguishing abiogenic from biogenic alkanes is essential for current investigations of Mars' atmosphere and for future exobiology missions to other planets and moons. Here, we show that alkanes synthesized during gas-phase radical recombination reactions in electrical discharge experiments have values of δ(2)H(methane)>δ(2)H(ethane)>δ(2)H(propane), similar to those of the carbon isotopes. The distribution of hydrogen isotopes in gas-phase radical reactions is likely due to kinetic fractionations either (i) from the preferential incorporation of (1)H into longer-chain alkanes due to the more rapid rate of collisions of the smaller (1)H-containing molecules or (ii) by secondary ion effects. Similar δ(13)C(C1-C2+) and δ(2)H(C1-C2+) patterns may be expected in a range of extraterrestrial environments where gas-phase radical reactions dominate, including interstellar space, the atmosphere and liquid hydrocarbon lakes of Saturn's moon Titan, and the outer atmospheres of Jupiter, Saturn, Neptune, and Uranus. Radical recombination reactions at high temperatures and pressures may provide an explanation for the combined reversed δ(13)C(C1-C2+) and δ(2)H(C1-C2+) patterns of terrestrial alkanes documented at a number of high-temperature/pressure crustal sites.

Ion desolvation as a mechanism for kinetic isotope fractionation in aqueous systems

Molecular dynamics simulations show that the desolvation rates of isotopes of Li(+), K(+), Rb(+), Ca(2+), Sr(2+), and Ba(2+) may have a relatively strong dependence on the metal cation mass. This inference is based on the observation that the exchange rate constant, k(wex), for water molecules in the first hydration shell follows an inverse power-law mass dependence (k(wex) ∝ m(-γ)), where the coefficient γ is 0.05 ± 0.01 on average for all cations studied. Simulated water-exchange rates increase with temperature and decrease with increasing isotopic mass for each element. The magnitude of the water-exchange rate is different for simulations run using different water models [i.e., extended simple point charge (SPC/E) vs. four-site transferrable intermolecular potential (TIP4P)]; however, the value of the mass exponent γ is the same. Reaction rate theory calculations predict mass exponents consistent with those determined via molecular dynamics simulations. The simulation-derived mass dependences imply that solids precipitating from aqueous solution under kinetically controlled conditions should be enriched in the light isotopes of the metal cations relative to the solutions, consistent with measured isotopic signatures in natural materials and laboratory experiments. Desolvation effects are large enough that they may be a primary determinant of the observed isotopic fractionation during precipitation.

Assessment of nitrogen and oxygen isotopic fractionation during nitrification and its expression in the marine environment

Nitrification is a microbially-catalyzed process whereby ammonia (NH(3)) is oxidized to nitrite (NO(2)(-)) and subsequently to nitrate (NO(3)(-)). It is also responsible for production of nitrous oxide (N(2)O), a climatically important greenhouse gas. Because the microbes responsible for nitrification are primarily autotrophic, nitrification provides a unique link between the carbon and nitrogen cycles. Nitrogen and oxygen stable isotope ratios have provided insights into where nitrification contributes to the availability of NO(2)(-) and NO(3)(-), and where it constitutes a significant source of N(2)O. This chapter describes methods for determining kinetic isotope effects involved with ammonia oxidation and nitrite oxidation, the two independent steps in the nitrification process, and their expression in the marine environment. It also outlines some remaining questions and issues related to isotopic fractionation during nitrification.

High-precision optical measurements of 13C/12C isotope ratios in organic compounds at natural abundance

A continuous-flow cavity ring-down spectroscopy (CRDS) system integrating a chromatographic separation technique, a catalytic combustor, and an isotopic (13)C/(12)C optical analyzer is described for the isotopic analysis of a mixture of organic compounds. A demonstration of its potential is made for the geochemically important class of short-chain hydrocarbons. The system proved to be linear over a 3-fold injection volume dynamic range with an average precision of 0.95 per thousand and 0.67 per thousand for ethane and propane, respectively. The calibrated accuracy for methane, ethane, and propane is within 3 per thousand of the values determined using isotope ratio mass spectrometry (IRMS), which is the current method of choice for compound-specific isotope analysis. With anticipated improvements, the low-cost, portable, and easy-to-use CRDS-based instrumental setup is poised to evolve into a credible challenge to the high-cost and complex IRMS-based technique.

Simplified batch equilibration for D/H determination of non-exchangeable hydrogen in solid organic material

Hydrogen isotopic analysis of organic materials has been widely applied in studies of paleoclimate, animal migration, forensics, food and flavor authentication, and the origin and diagenesis of organic matter. Hydrogen bound to carbon (C-H) generally retains isotopic information about the water present during organic matter synthesis and associated biosynthetic fractionations, but hydrogen bound to other elements (O, S, or N) can readily exchange with atmospheric water vapor and reflects recent exposure to water or vapor. These two pools must be separated to obtain meaningful information from isotope ratios of organic materials. Previously published analytical methods either replace exchangeable H chemically or control its isotopic composition, usually by equilibration with water or waters of known isotopic composition. In addition, the fraction of H that is exchangeable can vary among samples and is itself of scientific interest. Here we report an improved and automated double-equilibration approach.Samples are loaded in a 50-position autosampler carousel in an air-tight aluminum equilibration chamber. Water vapor of known isotopic composition is pumped through the chamber at 115 degrees C for at least 6 h. After flushing with dry N(2) and being cooled, the carousel is rapidly transferred from the equilibration chamber to a He-purged autosampler attached to a pyrolysis elemental analyzer connected to an isotope ratio mass spectrometer. By equilibrating two aliquots of each sample with two isotopically distinct waters, it is possible to calculate both (1) the D/H ratio of non-exchangeable H, and (2) the fraction of H that is exchangeable. Relative to previous double-equilibration techniques, this approach offers significant reductions in sample size and labor by allowing simultaneous equilibration of several tens of samples.

Carbon isotope fractionation by sulfate-reducing bacteria using different pathways for the oxidation of acetate

Acetate is a key intermediate in the anaerobic degradation of organic matter. In anoxic environments, available acetate is a competitive substrate for sulfate-reducing bacteria (SRB) and methane-producing archaea. Little is known about the fractionation of carbon isotopes by sulfate reducers. Therefore, we determined carbon isotope compositions in cultures of three acetate-utilizing SRB, Desulfobacter postgatei, Desulfobacter hydrogenophilus, and Desulfobacca acetoxidans. We found that these species showed strong differences in their isotope enrichment factors (epsilon) of acetate. During the consumption of acetate and sulfate, acetate was enriched in 13C by 19.3% per hundred in Desulfobacca acetoxidans. By contrast, both D. postgatei and D. hydrogenophilus showed a slight depletion of 13C resulting in epsilon(ac)-values of 1.8 and 1.5% per hundred, respectively. We suggest that the different isotope fractionation is due to the different metabolic pathways for acetate oxidation. The strongly fractionating Desulfobacca acetoxidans uses the acetyl-CoA/carbon monoxide dehydrogenase pathway, which is also used by acetoclastic methanogens that show a similar fractionation of acetate (epsilon(ac) = -21 to -27% per hundred). In contrast, Desulfobacter spp. oxidize acetate to CO2 via the tricarboxylic acid (TCA) cycle and apparently did not discriminate against 13C. Our results suggestthat carbon isotope fractionation in environments with sulfate reduction will strongly depend on the composition of the sulfate-reducing bacterial community oxidizing acetate.

The calibration of the intramolecular nitrogen isotope distribution in nitrous oxide measured by isotope ratio mass spectrometry

Two alternative approaches for the calibration of the intramolecular nitrogen isotope distribution in nitrous oxide using isotope ratio mass spectrometry have yielded a difference in the 15N site preference (defined as the difference between the delta15N of the central and end position nitrogen in NNO) of tropospheric N2O of almost 30 per thousand. One approach is based on adding small amounts of labeled 15N2O to the N2O reference gas and tracking the subsequent changes in m/z 30, 31, 44, 45 and 46, and this yields a 15N site preference of 46.3 +/- 1.4 per thousand for tropospheric N2O. The other involves the synthesis of N2O by thermal decomposition of isotopically characterized ammonium nitrate and yields a 15N site preference of 18.7 +/- 2.2 per thousand for tropospheric N2O. Both approaches neglect to fully account for isotope effects associated with the formation of NO+ fragment ions from the different isotopic species of N2O in the ion source of a mass spectrometer. These effects vary with conditions in the ion source and make it impossible to reproduce a calibration based on the addition of isotopically enriched N2O on mass spectrometers with different ion source configurations. These effects have a much smaller impact on the comparison of a laboratory reference gas with N2O synthesized from isotopically characterized ammonium nitrate. This second approach was successfully replicated and leads us to advocate the acceptance of the site preference value 18.7 +/- 2.2 per thousand for tropospheric N2O as the provisional community standard until further independent calibrations are developed and validated. We present a technique for evaluating the isotope effects associated with fragment ion formation and revised equations for converting ion signal ratios into isotopomer ratios.

Intramolecular, compound-specific, and bulk carbon isotope patterns in C3 and C4 plants: a review and synthesis

Studies using carbon isotope differences between C₃ and C₄ photosynthesis to calculate terrestrial productivity or soil carbon turnover assume that intramolecular isotopic patterns and isotopic shifts between specific plant components are similar in C₃ and C₄ plants. To test these assumptions, we calculated isotopic differences in studies measuring components from C₃ or C₄ photosynthesis. Relative to source sugars in fermentation, C₃ -derived ethanol had less ¹³ C and C₃ -derived CO₂ had more ¹³ C than C₄ -derived ethanol and CO₂ . Both results agreed with intramolecular isotopic signatures in C₃ and C₄ glucose. Isotopic shifts between plant compounds (e.g. lignin and cellulose) or tissues (e.g. leaves and roots) also differed in C₃ and C₄ plants. Woody C₃ plants allocated more carbon to ¹³ C-depleted compounds such as lignin or lipids than herbaceous C₃ or C₄ plants. This allocation influenced ¹³ C patterns among compounds and tissues. Photorespiration and isotopic fractionation at metabolic branch points, coupled to different allocation patterns during metabolism for C₃ vs C₄ plants, probably influence position-specific and compound-specific isotopic differences. Differing ¹³ C content of mobile and immobile compounds (e.g. sugars vs lignin) may then create isotopic differences among plant pools and along transport pathways. We conclude that a few basic mechanisms can explain intramolecular, compound-specific and bulk isotopic differences between C₃ and C₄ plants. Understanding these mechanisms will improve our ability to link bulk and compound-specific isotopic patterns to metabolic pathways in C₃ and C₄ plants. Contents Summary 371 I. Introduction 372 II. Methods and terminology 373 III. Results 373 IV. Discussion 376 V. Conclusions 382 Acknowledgements 382 References 382.

Mass-independent oxygen isotope fractionation in atmospheric CO as a result of the reaction CO + OH

Atmospheric carbon monoxide (CO) exhibits mass-independent fractionation in the oxygen isotopes. An 17O excess up to 7.5 per mil was observed in summer at high northern latitudes. The major source of this puzzling fractionation in this important trace gas is its dominant atmospheric removal reaction, CO + OH --> CO2 + H, in which the surviving CO gains excess 17O. The occurrence of mass-independent fractionation in the reaction of CO with OH raises fundamental questions about kinetic processes. At the same time the effect is a useful marker for the degree to which CO in the atmosphere has been reacting with OH.

Tansley Review No. 95 15 N natural abundance in soil-plant systems

Equilibrium and kinetic isotope fractionations during incomplete reactions result in minute differences in the ratio between the two stable X isotopes, ¹⁵ N and ¹⁴ N, in various N pools. In ecosystems such variations (usually expressed in per mil [δ¹⁵ N] deviations from the standard atmospheric N₂ ) depend on isotopic signatures of inputs and outputs, the input-output balance, N transformations and their specific isotope effects, and compartmentation of N within the system. Products along a sequence of reactions, e.g. the N mineralization-N uptake pathway, should, if fractionation factors were equal for the different reactions, become progressively depleted. However, fractionation factors van. For example, because nitrification discriminates against ¹⁵ N in the substrate more than does N mineralization, NH₄ ⁺ can become isotopically heavier than the organic N from which it is derived. Levels of isotopic enrichment depend dynamically on the stoichiometry of reactions, as well as on specific abiotic and biotic conditions. Thus, the δ¹⁵ N of a specific N pool is not a constant, and ¹⁵ N of a N compound added to the system is not a conservative, unchanging tracer. This fact, together with analytical problems of measuring ¹⁵ N in small and dynamic pools of N in the soil-plant system, and the complexity of the X cycle itself (for instance the abundance of reversible reactions), limit the possibilities of making inferences based on observations of ¹⁵ N abundance in one or a few pools of N in a system. Nevertheless, measurements of δ¹⁵ N might offer the advantage of giving insights into the N cycle without disturbing the system by adding ¹⁵ N tracer. Such attempts require, however, that the complex factors affecting ¹⁵ N in plants be taken into account, viz. (i) the source(s) of N (soil, precipitation, NO_X , NH₃ , N₂ -fixation), (ii) the depth(s) in soil from which N is taken up, (iii) the form(s) of soil-N used (organic N, NH₄ ⁺ , NO₃ ^- ), (iv) influences of mycorrhizal symbioses and fractionations during and after N uptake by plants, and (v) interactions between these factors and plant phenology. Because of this complexity, data on δ¹⁵ N can only be used alone when certain requirements are met, e.g. when a clearly discrete N source in terms of amount and isotopic signature is studied. For example, it is recommended that N in non-N₂ -fixing species should differ more than 5% from N derived by N₂ -fixation, and that several non-N₂ -fixing references are used, when data on δ¹⁵ N are used to estimate N_a -fixation in poorly described ecosystems. As well as giving information on N source effects, δ¹⁵ N can give insights into N cycle rates. For example, high levels of N deposition onto previously N-limited systems leads to increased nitrification, which produces ¹⁵ N-enriched NH₄ and N-depleted NO₃ . As many forest plants prefer NH₄ ^- they become enriched in ¹⁵ N in such circumstances. This change in plant ¹⁵ N will subsequently also occur in the soil surface horizon after litter-fall, and might be a useful indicator of N saturation, especially since there is usually an increase in ¹⁵ N with depth in soils of N-limited forests. Generally, interpretation of ¹⁵ N measurements requires additional independent data and modelling, and benefits from a controlled experimental setting. Modelling will be greatly assisted by the development of methods to measure the ¹⁵ N of small dynamic pools of N in soils. Direct comparisons with parallel low tracer level ¹⁵ N studies will be necessary to further develop the interpretation of variations in ¹⁵ N in soil-plant systems. Another promising approach is to study ratios of ¹⁵ N: ¹⁴ N together with other pairs of stable isotopes, e.g. ¹³ C: ¹² C or ¹⁸ O:¹⁶ O, in the same ion or molecules. This approach can help to tackle the challenge of distinguishing isotopic source effects from fractionations within the system studied. CONTENTS Summary 179 I. Introduction 180 II. Units, causes of isotope effects, stoichiometry, modelling 181 III. N dynamics and variations in ¹⁵ N abundance in soil-plant systems 183 IV. Applications 189 V. Conclusions and suggestions for future research 197 Acknowledgements 198 References 198.

Heavy water lengthens the period of free-running rhythms in lesioned hamsters bearing SCN grafts

Heavy water (D2O) lengthens the period of free-running circadian rhythms in most organisms. We compared the effect of D2O on free-running locomotor activity rhythms in intact and SCN-lesioned (SCN-X) hamsters that had recovered circadian rhythmicity following implantation of SCN grafts. The animals were housed individually in cages equipped with running wheels, and locomotor activity was monitored using a computer-based data acquisition system. At the end of the behavioral tests, animals were anesthetized and perfused. Brain sections were immunostained for vasoactive intestinal peptide (VIP) and vasopressin (VP) to evaluate the extent of the lesion and the presence of a functional graft. The D2O similarly lengthened the period of free-running activity without affecting amount of activity in both intact and in SCN-X grafted animals. The results indicate that D2O acts directly on the SCN to lengthen the free-running period, and suggest that coupling between pacemakers within the grafted SCN is as efficient as in the intact SCN.