1
|
Atay G, Holyavkin C, Can H, Arslan M, Topaloğlu A, Trotta M, Çakar ZP. Evolutionary engineering and molecular characterization of cobalt-resistant Rhodobacter sphaeroides. Front Microbiol 2024; 15:1412294. [PMID: 38993486 PMCID: PMC11236759 DOI: 10.3389/fmicb.2024.1412294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 06/12/2024] [Indexed: 07/13/2024] Open
Abstract
With its versatile metabolism including aerobic and anaerobic respiration, photosynthesis, photo-fermentation and nitrogen fixation, Rhodobacter sphaeroides can adapt to diverse environmental and nutritional conditions, including the presence of various stressors such as heavy metals. Thus, it is an important microorganism to study the molecular mechanisms of bacterial stress response and resistance, and to be used as a microbial cell factory for biotechnological applications or bioremediation. In this study, a highly cobalt-resistant and genetically stable R. sphaeroides strain was obtained by evolutionary engineering, also known as adaptive laboratory evolution (ALE), a powerful strategy to improve and characterize genetically complex, desired microbial phenotypes, such as stress resistance. For this purpose, successive batch selection was performed in the presence of gradually increased cobalt stress levels between 0.1-15 mM CoCl2 for 64 passages and without any mutagenesis of the initial population prior to selection. The mutant individuals were randomly chosen from the last population and analyzed in detail. Among these, a highly cobalt-resistant and genetically stable evolved strain called G7 showed significant cross-resistance against various stressors such as iron, magnesium, nickel, aluminum, and NaCl. Growth profiles and flame atomic absorption spectrometry analysis results revealed that in the presence of 4 mM CoCl2 that significantly inhibited growth of the reference strain, the growth of the evolved strain was unaffected, and higher levels of cobalt ions were associated with G7 cells than the reference strain. This may imply that cobalt ions accumulated in or on G7 cells, indicating the potential of G7 for cobalt bioremediation. Whole genome sequencing of the evolved strain identified 23 single nucleotide polymorphisms in various genes that are associated with transcriptional regulators, NifB family-FeMo cofactor biosynthesis, putative virulence factors, TRAP-T family transporter, sodium/proton antiporter, and also in genes with unknown functions, which may have a potential role in the cobalt resistance of R. sphaeroides.
Collapse
Affiliation(s)
- Güneş Atay
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Can Holyavkin
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Hanay Can
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Mevlüt Arslan
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Alican Topaloğlu
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| | - Massimo Trotta
- IPCF-CNR Istituto per I processi Chimico-Fisici, Consiglio Nazionale delle Ricerche, Bari, Italy
| | - Zeynep Petek Çakar
- Department of Molecular Biology and Genetics, Faculty of Science and Letters, Istanbul Technical University, İstanbul, Türkiye
- Dr. Orhan Öcalgiray Molecular Biology, Biotechnology and Genetics Research Center (İTÜ-MOBGAM), Istanbul Technical University, İstanbul, Türkiye
| |
Collapse
|
2
|
Morris JA, Lickey BS, Liptak MD. Insertion of cobalt into tetrapyrroles. VITAMINS AND HORMONES 2022; 119:1-22. [PMID: 35337616 DOI: 10.1016/bs.vh.2022.01.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Vitamin B12 is one of the most complex cofactors known, and this chapter will discuss current understanding with regards to the cobalt insertion step of its syntheses. Two total syntheses of vitamin B12 were reported in the 1970s, which remain two of the most exceptional achievements of natural product synthesis. In subsequent years, two distinct biosynthetic pathways were identified in aerobic and anaerobic organisms. For these biosynthetic pathways, selectivity for Co(II) over other divalent metal ions with similar ionic radii and coordination chemistry remains an open question with three competing hypotheses proposed: metal affinity, tetrapyrrole distortion, and product inhibition. A 20 step biosynthetic route to convert 5-aminolevulinic acid (ALA) to vitamin B12 was elucidated in aerobic organisms in the 1990s, where cobalt is inserted relatively late in the pathway by the CobNST multi-protein complex. This chapter includes a mechanistic proposal for this reaction, but the majority of the proposal is based upon analogy to the ChlDHI magnesium chelatase complex as critical data for the cobalt chelatase is lacking. Later, in the 2010s, a distinct 21 step pathway from ALA to vitamin B12 was reported in anaerobic organisms, where cobalt is inserted early in the pathway by the enzyme CbiK. A recent study strongly suggests that the cobalt affinity of CbiK is the origin of cobalt selectivity for CbiK, but several important mechanistic questions remain unanswered. In general, it is expected that significant insight into the cobalt insertion mechanisms of CobNST and CbiK could be derived from additional structural, spectroscopic, and computational data.
Collapse
Affiliation(s)
- J A Morris
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | - B S Lickey
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | - M D Liptak
- Department of Chemistry, University of Vermont, Burlington, VT, United States.
| |
Collapse
|
3
|
Journot G, Neier R, Gualandi A. Hydrogenation of Calix[4]pyrrole: From the Formation to the Synthesis of Calix[4]pyrrolidine. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100620] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
| | - Reinhard Neier
- Department of Chemistry University of Neuchâtel Avenue Bellevaux 51 2000 Neuchâtel Switzerland
| | - Andrea Gualandi
- Dipartimento di Chimica “G. Ciamician” Alma Mater Studiorum – Università di Bologna Via Selmi 2 I-40126 Bologna Italy
| |
Collapse
|
4
|
Hamchand R, Lafountain AM, Büchel R, Maas KR, Hird SM, Warren M, Frank HA, Brückner C. Red Fluorescence of European Hedgehog (Erinaceus europaeus) Spines Results from Free-Base Porphyrins of Potential Microbial Origin. J Chem Ecol 2021; 47:588-596. [PMID: 33948884 DOI: 10.1007/s10886-021-01279-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 04/13/2021] [Accepted: 04/27/2021] [Indexed: 01/04/2023]
Abstract
Bioluminescence has been recognized as an important means for inter- and intra-species communication. A growing number of reports of red fluorescence occurring in keratinaceous materials have become available. The fluorophore(s) in these cases were shown to be, or suspected to be, free base porphyrins. The red fluorescence found in the downs of bustards was associated with inter-species signaling in mate selection. First reported in 1925, we confirm that spines of the European hedgehog (Erinaceus europaeus) when irradiated with UV (365-395 nm) light display red fluorescence localized in the light-colored sections of their proximal ends. Using reflectance fluorescence spectroscopy, we confirmed that the fluorophores responsible for the emission are free-base porphyrins, as suspected in the original report. Base-induced degradation of the spine matrix and subsequent HPLC, UV-vis, and ESI+ mass spectrometry analysis revealed the presence of a mixture of coproporphyrin III and uroporphyrin III as predominant porphyrins and a minor fraction of protoporphyrin IX. Investigation of the spine microbiome uncovered the abundant presence of bacteria known to secrete and/or interconvert porphyrins and that are not present on the non-fluorescing quills of the North American porcupine (Erethizon dorsatum). Given this circumstantial evidence, we propose the porphyrins could originate from commensal bacteria. Furthermore, we hypothesize that the fluorescence may be incidental and of no biological function for the hedgehog.
Collapse
Affiliation(s)
- Randy Hamchand
- Department of Chemistry, University of Connecticut, Unit 3060, Storrs, CT, 06269-3060, USA
| | - Amy M Lafountain
- Department of Chemistry, University of Connecticut, Unit 3060, Storrs, CT, 06269-3060, USA
| | - Rhea Büchel
- Department of Chemistry, University of Connecticut, Unit 3060, Storrs, CT, 06269-3060, USA
| | - Kendra R Maas
- Microbial Analysis, Resources, and Services (MARS), University of Connecticut, Unit-3032, Storrs, CT, 06269-3032, USA
| | - Sarah M Hird
- Department of Molecular and Cell Biology, University of Connecticut, Unit 3125, Storrs, CT, 06269-3125, USA
| | - Martin Warren
- Department of Biochemistry, University of Kent, Canterbury, CT2 7NJ, UK
| | - Harry A Frank
- Department of Chemistry, University of Connecticut, Unit 3060, Storrs, CT, 06269-3060, USA
| | - Christian Brückner
- Department of Chemistry, University of Connecticut, Unit 3060, Storrs, CT, 06269-3060, USA.
| |
Collapse
|
5
|
Osman D, Cooke A, Young TR, Deery E, Robinson NJ, Warren MJ. The requirement for cobalt in vitamin B 12: A paradigm for protein metalation. BIOCHIMICA ET BIOPHYSICA ACTA. MOLECULAR CELL RESEARCH 2021; 1868:118896. [PMID: 33096143 PMCID: PMC7689651 DOI: 10.1016/j.bbamcr.2020.118896] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 10/13/2020] [Accepted: 10/14/2020] [Indexed: 12/20/2022]
Abstract
Vitamin B12, cobalamin, is a cobalt-containing ring-contracted modified tetrapyrrole that represents one of the most complex small molecules made by nature. In prokaryotes it is utilised as a cofactor, coenzyme, light sensor and gene regulator yet has a restricted role in assisting only two enzymes within specific eukaryotes including mammals. This deployment disparity is reflected in another unique attribute of vitamin B12 in that its biosynthesis is limited to only certain prokaryotes, with synthesisers pivotal in establishing mutualistic microbial communities. The core component of cobalamin is the corrin macrocycle that acts as the main ligand for the cobalt. Within this review we investigate why cobalt is paired specifically with the corrin ring, how cobalt is inserted during the biosynthetic process, how cobalt is made available within the cell and explore the cellular control of cobalt and cobalamin levels. The partitioning of cobalt for cobalamin biosynthesis exemplifies how cells assist metalation.
Collapse
Affiliation(s)
- Deenah Osman
- Department of Biosciences, Durham University, Durham DH1 3LE, UK; Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - Anastasia Cooke
- School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, UK.
| | - Tessa R Young
- Department of Biosciences, Durham University, Durham DH1 3LE, UK; Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - Evelyne Deery
- School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, UK.
| | - Nigel J Robinson
- Department of Biosciences, Durham University, Durham DH1 3LE, UK; Department of Chemistry, Durham University, Durham DH1 3LE, UK.
| | - Martin J Warren
- School of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, UK; Quadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UQ, UK; Biomedical Research Centre, University of East Anglia, Norwich NR4 7TJ, UK.
| |
Collapse
|
6
|
Abstract
The recently delineated structure- and reactivity-based concept of antivitamins B12 has begun to bear fruit by the generation, and study, of a range of such B12 -dummies, either vitamin B12 -derived, or transition metal analogues that also represent potential antivitamins B12 or specific B12 -antimetabolites. As reviewed here, this has opened up new research avenues in organometallic B12 -chemistry and bioinorganic coordination chemistry. Exploratory studies with antivitamins B12 have, furthermore, revealed some of their potential, as pharmacologically interesting compounds, for inducing B12 -deficiency in a range of organisms, from hospital resistant bacteria to laboratory mice. The derived capacity of antivitamins B12 to induce functional B12 -deficiency in mammalian cells and organs also suggest their valuable potential as growth inhibitors of cancerous human and animal cells.
Collapse
Affiliation(s)
- Bernhard Kräutler
- Institute of Organic Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck6020InnsbruckAustria
| |
Collapse
|
7
|
Abstract
Modified tetrapyrroles are large macrocyclic compounds, consisting of diverse conjugation and metal chelation systems and imparting an array of colors to the biological structures that contain them. Tetrapyrroles represent some of the most complex small molecules synthesized by cells and are involved in many essential processes that are fundamental to life on Earth, including photosynthesis, respiration, and catalysis. These molecules are all derived from a common template through a series of enzyme-mediated transformations that alter the oxidation state of the macrocycle and also modify its size, its side-chain composition, and the nature of the centrally chelated metal ion. The different modified tetrapyrroles include chlorophylls, hemes, siroheme, corrins (including vitamin B12), coenzyme F430, heme d1, and bilins. After nearly a century of study, almost all of the more than 90 different enzymes that synthesize this family of compounds are now known, and expression of reconstructed operons in heterologous hosts has confirmed that most pathways are complete. Aside from the highly diverse nature of the chemical reactions catalyzed, an interesting aspect of comparative biochemistry is to see how different enzymes and even entire pathways have evolved to perform alternative chemical reactions to produce the same end products in the presence and absence of oxygen. Although there is still much to learn, our current understanding of tetrapyrrole biogenesis represents a remarkable biochemical milestone that is summarized in this review.
Collapse
Affiliation(s)
- Donald A Bryant
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717
| | - C Neil Hunter
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom
| | - Martin J Warren
- School of Biosciences, University of Kent, Canterbury CT2 7NJ, United Kingdom
- Quadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UQ, United Kingdom
| |
Collapse
|
8
|
Zhao YY, Cao CL, Liu YL, Wang J, Li SY, Li J, Deng Y. Genetic analysis of oxidative and endoplasmic reticulum stress responses induced by cobalt toxicity in budding yeast. Biochim Biophys Acta Gen Subj 2020; 1864:129516. [DOI: 10.1016/j.bbagen.2020.129516] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 12/07/2019] [Accepted: 12/31/2019] [Indexed: 12/23/2022]
|
9
|
Kieninger C, Baker JA, Podewitz M, Wurst K, Jockusch S, Lawrence AD, Deery E, Gruber K, Liedl KR, Warren MJ, Kräutler B. Zinc Substitution of Cobalt in Vitamin B 12: Zincobyric acid and Zincobalamin as Luminescent Structural B 12‐Mimics. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908428] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Christoph Kieninger
- Institute of Organic Chemistry and Center for Molecular Biosciences (CMBI) University of Innsbruck 6020 Innsbruck Austria
| | - Joseph A. Baker
- School of Biosciences University of Kent Canterbury CT2 7NJ UK
| | - Maren Podewitz
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI) University of Innsbruck 6020 Innsbruck Austria
| | - Klaus Wurst
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI) University of Innsbruck 6020 Innsbruck Austria
| | | | | | - Evelyne Deery
- School of Biosciences University of Kent Canterbury CT2 7NJ UK
| | - Karl Gruber
- Institute for Molecular Biosciences University of Graz Austria
| | - Klaus R. Liedl
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI) University of Innsbruck 6020 Innsbruck Austria
| | | | - Bernhard Kräutler
- Institute of Organic Chemistry and Center for Molecular Biosciences (CMBI) University of Innsbruck 6020 Innsbruck Austria
| |
Collapse
|
10
|
Kieninger C, Baker JA, Podewitz M, Wurst K, Jockusch S, Lawrence AD, Deery E, Gruber K, Liedl KR, Warren MJ, Kräutler B. Zinc Substitution of Cobalt in Vitamin B 12 : Zincobyric acid and Zincobalamin as Luminescent Structural B 12 -Mimics. Angew Chem Int Ed Engl 2019; 58:14568-14572. [PMID: 31420932 PMCID: PMC6790578 DOI: 10.1002/anie.201908428] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2019] [Indexed: 11/14/2022]
Abstract
Replacing the central cobalt ion of vitamin B12 by other metals has been a long-held aspiration within the B12 -field. Herein, we describe the synthesis from hydrogenobyric acid of zincobyric acid (Znby) and zincobalamin (Znbl), the Zn-analogues of the natural cobalt-corrins cobyric acid and vitamin B12 , respectively. The solution structures of Znby and Znbl were studied by NMR-spectroscopy. Single crystals of Znby were produced, providing the first X-ray crystallographic structure of a zinc corrin. The structures of Znby and of computationally generated Znbl were found to resemble the corresponding CoII -corrins, making such Zn-corrins potentially useful for investigations of B12 -dependent processes. The singlet excited state of Znby had a short life-time, limited by rapid intersystem crossing to the triplet state. Znby allowed the unprecedented observation of a corrin triplet (ET =190 kJ mol-1 ) and was found to be an excellent photo-sensitizer for 1 O2 (ΦΔ =0.70).
Collapse
Affiliation(s)
- Christoph Kieninger
- Institute of Organic Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck6020InnsbruckAustria
| | | | - Maren Podewitz
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck6020InnsbruckAustria
| | - Klaus Wurst
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck6020InnsbruckAustria
| | | | | | - Evelyne Deery
- School of BiosciencesUniversity of KentCanterburyCT2 7NJUK
| | - Karl Gruber
- Institute for Molecular BiosciencesUniversity ofGrazAustria
| | - Klaus R. Liedl
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck6020InnsbruckAustria
| | | | - Bernhard Kräutler
- Institute of Organic Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck6020InnsbruckAustria
| |
Collapse
|
11
|
Kieninger C, Deery E, Lawrence AD, Podewitz M, Wurst K, Nemoto-Smith E, Widner FJ, Baker JA, Jockusch S, Kreutz CR, Liedl KR, Gruber K, Warren MJ, Kräutler B. The Hydrogenobyric Acid Structure Reveals the Corrin Ligand as an Entatic State Module Empowering B 12 Cofactors for Catalysis. Angew Chem Int Ed Engl 2019; 58:10756-10760. [PMID: 31115943 PMCID: PMC6771967 DOI: 10.1002/anie.201904713] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Indexed: 11/09/2022]
Abstract
The B12 cofactors instill a natural curiosity regarding the primordial selection and evolution of their corrin ligand. Surprisingly, this important natural macrocycle has evaded molecular scrutiny, and its specific role in predisposing the incarcerated cobalt ion for organometallic catalysis has remained obscure. Herein, we report the biosynthesis of the cobalt-free B12 corrin moiety, hydrogenobyric acid (Hby), a compound crafted through pathway redesign. Detailed insights from single-crystal X-ray and solution structures of Hby have revealed a distorted helical cavity, redefining the pattern for binding cobalt ions. Consequently, the corrin ligand coordinates cobalt ions in desymmetrized "entatic" states, thereby promoting the activation of B12 -cofactors for their challenging chemical transitions. The availability of Hby also provides a route to the synthesis of transition metal analogues of B12 .
Collapse
Affiliation(s)
- Christoph Kieninger
- Institute of Organic Chemistry and Center for Molecular Biosciences, University of Innsbruck, 6020, Innsbruck, Austria
| | - Evelyne Deery
- School of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK
| | | | - Maren Podewitz
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences (CMBI), University of Innsbruck, 6020, Innsbruck, Austria
| | - Klaus Wurst
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences (CMBI), University of Innsbruck, 6020, Innsbruck, Austria
| | - Emi Nemoto-Smith
- School of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK
| | - Florian J Widner
- Institute of Organic Chemistry and Center for Molecular Biosciences, University of Innsbruck, 6020, Innsbruck, Austria
| | - Joseph A Baker
- School of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK
| | | | - Christoph R Kreutz
- Institute of Organic Chemistry and Center for Molecular Biosciences, University of Innsbruck, 6020, Innsbruck, Austria
| | - Klaus R Liedl
- Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences (CMBI), University of Innsbruck, 6020, Innsbruck, Austria
| | - Karl Gruber
- Institute for Molecular Biosciences, University of Graz, Austria
| | - Martin J Warren
- School of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK
| | - Bernhard Kräutler
- Institute of Organic Chemistry and Center for Molecular Biosciences, University of Innsbruck, 6020, Innsbruck, Austria
| |
Collapse
|
12
|
Kieninger C, Deery E, Lawrence AD, Podewitz M, Wurst K, Nemoto‐Smith E, Widner FJ, Baker JA, Jockusch S, Kreutz CR, Liedl KR, Gruber K, Warren MJ, Kräutler B. Die Hydrogenobyrsäure‐Struktur enthüllt den Corrin‐Liganden als entatisches Zustandsmodul zur Steigerung der Katalyseaktivität von B
12
‐Cofaktoren. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201904713] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Christoph Kieninger
- Institute of Organic Chemistry and Center for Molecular BiosciencesUniversity of Innsbruck 6020 Innsbruck Österreich
| | - Evelyne Deery
- School of BiosciencesUniversity of Kent Canterbury CT2 7NJ Großbritannien
| | - Andrew D. Lawrence
- School of BiosciencesUniversity of Kent Canterbury CT2 7NJ Großbritannien
| | - Maren Podewitz
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck 6020 Innsbruck Österreich
| | - Klaus Wurst
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck 6020 Innsbruck Österreich
| | - Emi Nemoto‐Smith
- School of BiosciencesUniversity of Kent Canterbury CT2 7NJ Großbritannien
| | - Florian J. Widner
- Institute of Organic Chemistry and Center for Molecular BiosciencesUniversity of Innsbruck 6020 Innsbruck Österreich
| | - Joseph A. Baker
- School of BiosciencesUniversity of Kent Canterbury CT2 7NJ Großbritannien
| | | | - Christoph R. Kreutz
- Institute of Organic Chemistry and Center for Molecular BiosciencesUniversity of Innsbruck 6020 Innsbruck Österreich
| | - Klaus R. Liedl
- Institute of General, Inorganic and Theoretical Chemistry and Center for Molecular Biosciences (CMBI)University of Innsbruck 6020 Innsbruck Österreich
| | - Karl Gruber
- Institute for Molecular BiosciencesUniversity of Graz Österreich
| | - Martin J. Warren
- School of BiosciencesUniversity of Kent Canterbury CT2 7NJ Großbritannien
| | - Bernhard Kräutler
- Institute of Organic Chemistry and Center for Molecular BiosciencesUniversity of Innsbruck 6020 Innsbruck Österreich
| |
Collapse
|
13
|
Pereira J, Simões M, Silva JL. Microalgal assimilation of vitamin B 12 toward the production of a superfood. J Food Biochem 2019; 43:e12911. [PMID: 31368540 DOI: 10.1111/jfbc.12911] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 05/07/2019] [Accepted: 05/08/2019] [Indexed: 12/24/2022]
Abstract
A network of components from different metabolic pathways is the building scaffold of an indispensable compound in the human organism-vitamin B12 . The biosynthesis of this compound is restricted to a limited number of representatives of bacteria and archaea, while vitamin B12 -dependent enzymes are spread through several domains of life. Different attempts have been performed to increase vitamin B12 levels in dietary products, particularly in vegetarian and vegan dietary regimes. The integration of vitamin B12 in microalgae through symbiosis with microorganisms generally recognized as safe, for example the probiotic Lactobacillus reuteri, can even increase the nutritional value of the microalgal biomass. This study reviews the microbial production of vitamin B12 based on genetic analyses and chemical studies. Recent genetic approaches are focused, particularly potential metabolic engineering targets to increase vitamin B12 production. The bioincorporation of vitamin B12 in microalgae as an attempt to provide a superfood is also reviewed. PRACTICAL APPLICATIONS: Novel food habits (i.e., vegan lifestyle) may lack relevant nutrients, including vitamin B12 . Therefore, there is an increased demand for dietary products rich in vitamin B12 . Of potential interest is the provision of microbial-based superfood rich in numerous nutrients, including this vitamin. This manuscript provides an in-depth and timely overview on vitamin B12 biosynthesis and the major advances on metabolic engineering for improved vitamin B12 production by probiotic bacteria and other microorganisms generally recognized as safe. A relevant advance would result from the bioincorporation of vitamin B12 in alternative microorganisms (non-vitamin B12 producers) increasingly recognized as superfood, that is microalgae.
Collapse
Affiliation(s)
- João Pereira
- Allmicroalgae-Natural Products, Lisboa, Portugal.,LEPABE, Departamento de Engenharia Química, da Universidade do Porto, Porto, Portugal
| | - Manuel Simões
- LEPABE, Departamento de Engenharia Química, da Universidade do Porto, Porto, Portugal
| | | |
Collapse
|
14
|
Balakrishna A, Aguiar A, Sobral PJM, Wani MY, Almeida e Silva J, Sobral AJFN. Paal–Knorr synthesis of pyrroles: from conventional to green synthesis. CATALYSIS REVIEWS-SCIENCE AND ENGINEERING 2018. [DOI: 10.1080/01614940.2018.1529932] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Avula Balakrishna
- Department of Chemistry, Faculty of Sciences and Engineering, University of Coimbra, Coimbra, Portugal
- Department of Chemistry, Rajeev Gandhi Memorial College of Engineering and Technology (Autonomous), Nandyal, Andhra Pradesh, India
| | - António Aguiar
- Department of Chemistry, Faculty of Sciences and Engineering, University of Coimbra, Coimbra, Portugal
| | | | - Mohmmad Younus Wani
- Department of Chemistry, Faculty of Sciences and Engineering, University of Coimbra, Coimbra, Portugal
- Chemistry Department, Faculty of Science, University of Jeddah, Jeddah, Kingdom of Saudi Arabia
| | - Joana Almeida e Silva
- Department of Chemistry, Faculty of Sciences and Engineering, University of Coimbra, Coimbra, Portugal
| | - Abilio J. F. N. Sobral
- Department of Chemistry, Faculty of Sciences and Engineering, University of Coimbra, Coimbra, Portugal
| |
Collapse
|
15
|
Abstract
The biosynthesis of B12, involving up to 30 different enzyme-mediated steps, only occurs in bacteria. Thus, most eukaryotes require an external source of B12, and yet the vitamin appears to have only two functions in eukaryotes: as a cofactor for the enzymes methionine synthase and methylmalonylCoA mutase. These two functions are crucial for normal health in humans, and in particular, the formation of methionine is essential for providing methyl groups for over 100 methylation processes. Interference with the methionine synthase reaction not only depletes the body of methyl groups but also leads to the accumulation of homocysteine, a risk factor for many diseases. The syndrome pernicious anemia, characterized by lack of intrinsic factor, leads to a severe, sometimes fatal form of B12 deficiency. However, there is no sharp cutoff for B12 deficiency; rather, there is a continuous inverse relationship between serum B12 and a variety of undesirable outcomes, including neural tube defects, stroke, and dementia. The brain is particularly vulnerable; in children, inadequate B12 stunts brain and intellectual development. Suboptimal B12 status (serum B12<300pmol/L) is very common, occurring in 30%-60% of the population, in particular in pregnant women and in less-developed countries. Thus, many tens of millions of people in the world may suffer harm from having a poor B12 status. Public health steps are urgently needed to correct this inadequacy.
Collapse
Affiliation(s)
- A David Smith
- Department of Pharmacology, University of Oxford, Oxford, United Kingdom.
| | - Martin J Warren
- School of Biosciences, University of Kent, Canterbury, Kent, United Kingdom
| | - Helga Refsum
- Department of Nutrition, University of Oslo, Oslo, Norway
| |
Collapse
|
16
|
Schubert T. The organohalide-respiring bacterium Sulfurospirillum multivorans: a natural source for unusual cobamides. World J Microbiol Biotechnol 2017; 33:93. [DOI: 10.1007/s11274-017-2258-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Accepted: 04/01/2017] [Indexed: 01/27/2023]
|
17
|
Elucidation of the biosynthesis of the methane catalyst coenzyme F 430. Nature 2017; 543:78-82. [PMID: 28225763 PMCID: PMC5337119 DOI: 10.1038/nature21427] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2016] [Accepted: 01/25/2017] [Indexed: 02/06/2023]
Abstract
Methane biogenesis in methanogens is mediated by methyl-coenzyme M reductase, an enzyme that is also responsible for the utilisation of methane through anaerobic methane oxidation. The enzyme employs an ancillary factor called coenzyme F430, a nickel-containing modified tetrapyrrole that promotes catalysis through a novel methyl radical/Ni(II)-thiolate intermediate. However, the biosynthesis of coenzyme F430 from the common primogenitor uroporphyrinoge III, incorporating 11 steric centres into the macrocycle, has remained poorly understood although the pathway must involve chelation, amidation, macrocyclic ring reduction, lactamisation and carbocyclic ring formation. We have now identified the proteins that catalyse coenzyme F430 biosynthesis from sirohydrochlorin, termed CfbA-E, and shown their activity. The research completes our understanding of how nature is able to construct its repertoire of tetrapyrrole-based life pigments, permitting the development of recombinant systems to utilise these metalloprosthetic groups more widely.
Collapse
|
18
|
Liu Q, Tang M, Zeng W, Zhang X, Wang J, Zhou Z. Optimal Size Matching and Minimal Distortion Energy: Implications for Natural Selection by the Macrocycle of the Iron Species in Heme. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201600883] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Qiuhua Liu
- College of Chemistry and Chemical EngineeringCentral South University410083ChangshaChina
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecules of the Ministry of EducationSchool of Chemistry and Chemical EngineeringHunan University of Science and Technology411201XiangtanChina
| | - Min Tang
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecules of the Ministry of EducationSchool of Chemistry and Chemical EngineeringHunan University of Science and Technology411201XiangtanChina
| | - Wennan Zeng
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecules of the Ministry of EducationSchool of Chemistry and Chemical EngineeringHunan University of Science and Technology411201XiangtanChina
| | - Xi Zhang
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecules of the Ministry of EducationSchool of Chemistry and Chemical EngineeringHunan University of Science and Technology411201XiangtanChina
| | - Jianxiu Wang
- College of Chemistry and Chemical EngineeringCentral South University410083ChangshaChina
| | - Zaichun Zhou
- Key Laboratory of Theoretical Organic Chemistry and Functional Molecules of the Ministry of EducationSchool of Chemistry and Chemical EngineeringHunan University of Science and Technology411201XiangtanChina
| |
Collapse
|
19
|
Banala S, Wurst K, Kräutler B. Panchromatic π-Extended Porphyrins from Conjugation with Quinones. Chempluschem 2016; 81:477-488. [PMID: 31968777 DOI: 10.1002/cplu.201600115] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Indexed: 11/06/2022]
Abstract
Typical porphyrins are coloured compounds due to their characteristic wavelength-selective visible light absorptions. An exceptional "blackened" ZnII -porphyrin was recently obtained from fusing the β,β'-positions of the porphyrin core with four quinone units. Here, studies with metal-free and NiII -containing analogues are reported. These quinone-fused porphyrins were prepared from the corresponding β,β'-tetrasulfolenoporphyrins via thermally generated porphyrindienes, which were trapped by [4+2] cycloaddition as benzoquinone cycloadducts, which were subsequently oxidised. By using this strategy, metal-free and NiII -containing porphyrins with one, two, three or four conjugated naphthoquinone moieties were prepared efficiently. The presence of the π-conjugated naphthoquinone moieties changed the porphyrin chromophores profoundly, giving broadly absorbing "blackened" pigments. The influence of coordinated NiII ions, or of the absence of a metal ion in the modified porphyrin core, on their structural and spectroscopic properties was explored. Blackened quinone-conjugated porphyrins might be pigments suitable for solar energy conversion. With their unique peripheral functional groups they are also a set of porphyrins "programmed" for further covalent extension. Thus, they are building blocks for the preparation of supra-porphyrinoid assemblies that might be useful in optoelectronics and in the nanosciences.
Collapse
Affiliation(s)
- Srinivas Banala
- Institute of Organic Chemistry, University of Innsbruck, Innrain 80-82, 6020, Innsbruck, Austria.,Institutes of Organic Chemistry and Experimental Molecular Imaging, RWTH University Aachen, 52074, Aachen, Germany
| | - Klaus Wurst
- Institute of General, Inorganic and Theoretical Chemistry, University of Innsbruck, Innrain 80-82, 6020, Innsbruck, Austria
| | - Bernhard Kräutler
- Institute of Organic Chemistry, University of Innsbruck, Innrain 80-82, 6020, Innsbruck, Austria
| |
Collapse
|
20
|
Crystal structure of CobK reveals strand-swapping between Rossmann-fold domains and molecular basis of the reduced precorrin product trap. Sci Rep 2015; 5:16943. [PMID: 26616290 PMCID: PMC4663756 DOI: 10.1038/srep16943] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2015] [Accepted: 10/22/2015] [Indexed: 11/08/2022] Open
Abstract
CobK catalyzes the essential reduction of the precorrin ring in the cobalamin biosynthetic pathway. The crystal structure of CobK reveals that the enzyme, despite not having the signature sequence, comprises two Rossmann fold domains which bind coenzyme and substrate respectively. The two parallel β-sheets have swapped their last β-strands giving a novel sheet topology which is an interesting variation on the Rossmann-fold. The trapped ternary complex with coenzyme and product reveals five conserved basic residues that bind the carboxylates of the tetrapyrrole tightly anchoring the product. A loop, disordered in both the apoenzyme and holoenzyme structures, closes around the product further tightening binding. The structure is consistent with a mechanism involving protonation of C18 and pro-R hydride transfer from NADPH to C19 of precorrin-6A and reveals the interactions responsible for the specificity of CobK. The almost complete burial of the reduced precorrin product suggests a remarkable form of metabolite channeling where the next enzyme in the biosynthetic pathway triggers product release.
Collapse
|
21
|
Abstract
This review summarizes research performed over the last 23 years on the genetics, enzyme structures and functions, and regulation of the expression of the genes encoding functions involved in adenosylcobalamin (AdoCbl, or coenzyme B12) biosynthesis. It also discusses the role of coenzyme B12 in the physiology of Salmonella enterica serovar Typhimurium LT2 and Escherichia coli. John Roth's seminal contributions to the field of coenzyme B12 biosynthesis research brought the power of classical and molecular genetic, biochemical, and structural approaches to bear on the extremely challenging problem of dissecting the steps of what has turned out to be one of the most complex biosynthetic pathways known. In E. coli and serovar Typhimurium, uro'gen III represents the first branch point in the pathway, where the routes for cobalamin and siroheme synthesis diverge from that for heme synthesis. The cobalamin biosynthetic pathway in P. denitrificans was the first to be elucidated, but it was soon realized that there are at least two routes for cobalamin biosynthesis, representing aerobic and anaerobic variations. The expression of the AdoCbl biosynthetic operon is complex and is modulated at different levels. At the transcriptional level, a sensor response regulator protein activates the transcription of the operon in response to 1,2-Pdl in the environment. Serovar Typhimurium and E. coli use ethanolamine as a source of carbon, nitrogen, and energy. In addition, and unlike E. coli, serovar Typhimurium can also grow on 1,2-Pdl as the sole source of carbon and energy.
Collapse
|
22
|
A concise synthesis of Ni-didecarboxysirohydrochlorin hexamethylester—a model compound for key intermediates in heme d1 and heme biosynthesis. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.10.110] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
23
|
Padmanabhan B, Yokoyama S, Bessho Y. Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B12) biosynthesis. BMC STRUCTURAL BIOLOGY 2013; 13:10. [PMID: 23688113 PMCID: PMC3672029 DOI: 10.1186/1472-6807-13-10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/02/2013] [Accepted: 05/10/2013] [Indexed: 11/10/2022]
Abstract
BACKGROUND In the anaerobic pathway of cobalamin (vitamin B12) synthesis, the CbiT enzyme plays two roles, as a cobalt-precorrin-7 C15-methyltransferase and a C12-decarboxylase, to produce the intermediate, cobalt-precorrin 8. RESULTS The primary structure of the hypothetical protein MJ0391, from Methanocaldococcus jannaschii, suggested that MJ0391 is a putative CbiT. Here, we report the crystal structure of MJ0391, solved by the MAD procedure and refined to final R-factor and R-free values of 19.8 & 27.3%, respectively, at 2.3 Å resolution. The asymmetric unit contains two NCS molecules, and the intact tetramer generated by crystallographic symmetry may be functionally important. The overall tertiary structure and the tetrameric arrangements are highly homologous to those found in MT0146/CbiT from Methanobacterium thermoautotrophicum. CONCLUSIONS The conservation of functional residues in the binding site for the co-factor, AdoMet, and in the putative precorrin-7 binding pocket suggested that MJ0391 may also possess CbiT activity. The putative function of MJ0391 is discussed, based on structural homology.
Collapse
Affiliation(s)
- Balasundaram Padmanabhan
- Department of Biophysics, National Institute of Mental Health and Neuro Sciences (NIMHANS), Bangalore 560029, India,RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan
| | - Shigeyuki Yokoyama
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan,Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Yoshitaka Bessho
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan,RIKEN SPring-8 Center, Harima Institute, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan
| |
Collapse
|
24
|
Alkim C, Benbadis L, Yilmaz U, Cakar ZP, François JM. Mechanisms other than activation of the iron regulon account for the hyper-resistance to cobalt of a Saccharomyces cerevisiae strain obtained by evolutionary engineering. Metallomics 2013; 5:1043-60. [DOI: 10.1039/c3mt00107e] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
25
|
Deery E, Schroeder S, Lawrence AD, Taylor SL, Seyedarabi A, Waterman J, Wilson KS, Brown D, Geeves MA, Howard MJ, Pickersgill RW, Warren MJ. An enzyme-trap approach allows isolation of intermediates in cobalamin biosynthesis. Nat Chem Biol 2012; 8:933-40. [PMID: 23042036 PMCID: PMC3480714 DOI: 10.1038/nchembio.1086] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2012] [Accepted: 09/05/2012] [Indexed: 11/16/2022]
Abstract
The biosynthesis of many vitamins and coenzymes has often proven difficult to elucidate owing to a combination of low abundance and kinetic lability of the pathway intermediates. Through a serial reconstruction of the cobalamin (vitamin B(12)) pathway in Escherichia coli and by His tagging the terminal enzyme in the reaction sequence, we have observed that many unstable intermediates can be isolated as tightly bound enzyme-product complexes. Together, these approaches have been used to extract intermediates between precorrin-4 and hydrogenobyrinic acid in their free acid form and permitted the delineation of the overall reaction catalyzed by CobL, including the formal elucidation of precorrin-7 as a metabolite. Furthermore, a substrate-carrier protein, CobE, that can also be used to stabilize some of the transient metabolic intermediates and enhance their onward transformation, has been identified. The tight association of pathway intermediates with enzymes provides evidence for a form of metabolite channeling.
Collapse
Affiliation(s)
- Evelyne Deery
- School of Biosciences, University of Kent, Canterbury, Kent, UK
| | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
26
|
Kang Z, Zhang J, Zhou J, Qi Q, Du G, Chen J. Recent advances in microbial production of δ-aminolevulinic acid and vitamin B12. Biotechnol Adv 2012; 30:1533-42. [PMID: 22537876 DOI: 10.1016/j.biotechadv.2012.04.003] [Citation(s) in RCA: 89] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2012] [Revised: 03/29/2012] [Accepted: 04/10/2012] [Indexed: 02/07/2023]
Abstract
δ-aminolevulinate (ALA) is an important intermediate involved in tetrapyrrole synthesis (precursor for vitamin B12, chlorophyll and heme) in vivo. It has been widely applied in agriculture and medicine. On account of many disadvantages of its chemical synthesis, microbial production of ALA has been received much attention as an alternative because of less expensive raw materials, low pollution, and high productivity. Vitamin B12, one of ALA derivatives, which plays a vital role in prevention of anaemia has also attracted intensive works. In this review, recent advances on the production of ALA and vitamin B12 with novel approaches such as whole-cell enzyme-transformation and metabolic engineering are described. Furthermore, the direction for future research and perspective are also summarized.
Collapse
Affiliation(s)
- Zhen Kang
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | | | | | | | | | | |
Collapse
|
27
|
Eschenmoser A. Ätiologie potentiell primordialer Biomolekül-Strukturen: Vom Vitamin B12 zu den Nukleinsäuren und der Frage nach der Chemie der Entstehung des Lebens - ein Rückblick. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201103672] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
28
|
Eschenmoser A. Etiology of potentially primordial biomolecular structures: from vitamin B12 to the nucleic acids and an inquiry into the chemistry of life's origin: a retrospective. Angew Chem Int Ed Engl 2011; 50:12412-72. [PMID: 22162284 DOI: 10.1002/anie.201103672] [Citation(s) in RCA: 135] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2011] [Indexed: 11/10/2022]
Abstract
"We'll never be able to know" is a truism that leads to resignation with respect to any experimental effort to search for the chemistry of life's origin. But such resignation runs radically counter to the challenge imposed upon chemistry as a natural science. Notwithstanding the prognosis according to which the shortest path to understanding the metamorphosis of the chemical into the biological is by way of experimental modeling of "artificial chemical life", the scientific search for the route nature adopted in creating the life we know will arguably never truly end. It is, after all, part of the search for our own origin.
Collapse
Affiliation(s)
- Albert Eschenmoser
- Organisch-chemisches Laboratorium der ETH Zürich, Hönggerberg, Wolfgang-Pauli-Str. 10, CHI H309, CH-8093 Zürich, Switzerland
| |
Collapse
|
29
|
LeBlanc JG, Laiño JE, del Valle MJ, Vannini V, van Sinderen D, Taranto MP, de Valdez GF, de Giori GS, Sesma F. B-group vitamin production by lactic acid bacteria--current knowledge and potential applications. J Appl Microbiol 2011; 111:1297-309. [PMID: 21933312 DOI: 10.1111/j.1365-2672.2011.05157.x] [Citation(s) in RCA: 242] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Although most vitamins are present in a variety of foods, human vitamin deficiencies still occur in many countries, mainly because of malnutrition not only as a result of insufficient food intake but also because of unbalanced diets. Even though most lactic acid bacteria (LAB) are auxotrophic for several vitamins, it is now known that certain strains have the capability to synthesize water-soluble vitamins such as those included in the B-group (folates, riboflavin and vitamin B(12) amongst others). This review article will show the current knowledge of vitamin biosynthesis by LAB and show how the proper selection of starter cultures and probiotic strains could be useful in preventing clinical and subclinical vitamin deficiencies. Here, several examples will be presented where vitamin-producing LAB led to the elaboration of novel fermented foods with increased and bioavailable vitamins. In addition, the use of genetic engineering strategies to increase vitamin production or to create novel vitamin-producing strains will also be discussed. This review will show that the use of vitamin-producing LAB could be a cost-effective alternative to current vitamin fortification programmes and be useful in the elaboration of novel vitamin-enriched products.
Collapse
Affiliation(s)
- J G LeBlanc
- Centro de Referencia para Lactobacilos (CERELA-CONICET), Chacabuco 145, Tucumán, Argentina.
| | | | | | | | | | | | | | | | | |
Collapse
|
30
|
Fedosov SN, Ruetz M, Gruber K, Fedosova NU, Kräutler B. A Blue Corrinoid from Partial Degradation of Vitamin B12 in Aqueous Bicarbonate: Spectra, Structure, and Interaction with Proteins of B12 Transport. Biochemistry 2011; 50:8090-101. [DOI: 10.1021/bi200724s] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sergey N. Fedosov
- Department of Molecular Biology
and Genetics, Aarhus University, Science
Park, Gustav Wieds Vej 10, DK 8000 Aarhus C, Denmark
| | - Markus Ruetz
- Institute of Organic Chemistry
and Center of Molecular Biosciences, University of Innsbruck, Innrain 52A, Innsbruck A-6020, Austria
| | - Karl Gruber
- Institute of Molecular Biosciences, University of Graz, Humboldtstrasse 50/3, Graz A-8010,
Austria
| | - Natalya U. Fedosova
- Department of Biomedicine, Aarhus University, Ole Worms Alle 1185, DK 8000 Aarhus
C, Denmark
| | - Bernhard Kräutler
- Institute of Organic Chemistry
and Center of Molecular Biosciences, University of Innsbruck, Innrain 52A, Innsbruck A-6020, Austria
| |
Collapse
|
31
|
Pichon C, Scott AI. Synthesis of a novel tetrapyrrolic macrolactam and its activity towards Uro'gen III synthase. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/recl.19961150102] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
32
|
A. Jacobi P, L. Brielmann H, Chiu M, Ghosh I, I. Hauck S, Lanz S, Leung S, Li Y, Liu H, Löwer F, G. O’Neal W, Pippin D, Pollina E, A. Pratt B, Robert F, P. Roberts W, Tassa C, Wang H. 4-Alkynoic Acids in the Synthesis of Biologically Important Tetrapyrroles. HETEROCYCLES 2010. [DOI: 10.3987/rev-10-sr(e)6] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
33
|
Padovani D, Banerjee R. A rotary mechanism for coenzyme B(12) synthesis by adenosyltransferase. Biochemistry 2009; 48:5350-7. [PMID: 19413290 DOI: 10.1021/bi900454s] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Adenosyltransferases (ATRs) catalyze the synthesis of the reactive cobalt-carbon bond found in coenzyme B(12) or 5'-deoxyadenosylcobalamin (AdoCbl), which serves as a cofactor for a number of isomerases. The reaction involves a reductive adenosylation of cob(II)alamin in which an electron delivered by a reductase reduces cob(II)alamin to cob(I)alamin, which attacks the 5'-carbon of ATP to form AdoCbl and inorganic triphosphate. Of the three classes of ATRs found in nature, the PduO type, which is also the only one found in mammals, is the most extensively studied. The crystal structures of a number of PduO-type ATRs are available and reveal a trimeric organization with the active sites located at the subunit interfaces. We have previously demonstrated that the ATR from Methylobacterium extorquens, which supports methylmalonyl-CoA mutase activity, serves dual functions; i.e., it tailors the active AdoCbl form of the cofactor and then transfers it directly to the dependent mutase (Padovani et al. (2008) Nat. Chem. Biol. 4, 194). Only two of the three active sites in ATR are simultaneously occupied by AdoCbl. In this study, we demonstrate that binding of the substrate ATP to ATR that is fully loaded with AdoCbl leads to the ejection of 1 equivalent of the cofactor into solution. In the presence of methylmalonyl-CoA mutase and ATP, AdoCbl is transferred from ATR to the acceptor protein in a process that exhibits an approximately 3.5-fold lower K(act) for ATP compared to the one in which cofactor is released into solution. Furthermore, ATP favorably influences cofactor transfer in the forward direction by reducing the ratio of apo-methylmalonyl-CoA mutase/holo-ATR required for delivery of 1 equivalent of AdoCbl, from 4 to 1. These results lead us to propose a rotary mechanism for ATR function in which, at any given time, only two of its active sites are used for AdoCbl synthesis and where binding of ATP to the vacant site leads to the transfer of the high value AdoCbl product to the acceptor mutase.
Collapse
Affiliation(s)
- Dominique Padovani
- Department of Biological Chemistry, University of Michigan Medical Center, Ann Arbor, Michigan 48109-5606, USA
| | | |
Collapse
|
34
|
Banala S, Rühl T, Wurst K, Kräutler B. Porphyrine durch Konjugation mit Chinonen “schwarzfärben”. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200804143] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
35
|
Banala S, Rühl T, Wurst K, Kräutler B. “Blackening” Porphyrins by Conjugation with Quinones. Angew Chem Int Ed Engl 2009; 48:599-603. [DOI: 10.1002/anie.200804143] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
36
|
Schroeder S, Lawrence AD, Biedendieck R, Rose RS, Deery E, Graham RM, McLean KJ, Munro AW, Rigby SEJ, Warren MJ. Demonstration that CobG, the monooxygenase associated with the ring contraction process of the aerobic cobalamin (vitamin B12) biosynthetic pathway, contains an Fe-S center and a mononuclear non-heme iron center. J Biol Chem 2008; 284:4796-805. [PMID: 19068481 DOI: 10.1074/jbc.m807184200] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The ring contraction process that occurs during cobalamin (vitamin B(12)) biosynthesis is mediated via the action of two enzymes, CobG and CobJ. The first of these generates a tertiary alcohol at the C-20 position of precorrin-3A by functioning as a monooxygenase, a reaction that also forms a gamma lactone with the acetic acid side chain on ring A. The product, precorrin-3B, is then acted upon by CobJ, which methylates at the C-17 position and promotes ring contraction of the macrocycle by catalyzing a masked pinacol rearrangement. Here, we report the characterization of CobG enzymes from Pseudomonas denitrificans and Brucella melitensis. We show that both contain a [4Fe-4S] center as well as a mononuclear non-heme iron. Although both enzymes are active in vivo, the P. denitrificans enzyme was found to be inactive in vitro. Further analysis of this enzyme revealed that the mononuclear non-heme iron was not reducible, and it was concluded that it is rapidly inactivated once it is released from the bacterial cell. In contrast, the B. melitensis enzyme was found to be fully active in vitro and the mononuclear non-heme iron was reducible by dithionite. The reduced mononuclear non-heme was able to react with the oxygen analogue NO, but only in the presence of the substrate precorrin-3A. The cysteine residues responsible for binding the Fe-S center were identified by site-directed mutagenesis. A mechanism for CobG is presented.
Collapse
Affiliation(s)
- Susanne Schroeder
- Protein Science Group, Department of Biosciences, University of Kent, Canterbury, Kent CT27NJ, United Kingdom
| | | | | | | | | | | | | | | | | | | |
Collapse
|
37
|
Tandem asymmetric C-C bond formations by enzyme catalysis. Top Curr Chem (Cham) 2008. [DOI: 10.1007/bfb0119221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
|
38
|
Gschösser S, Kräutler B. B12-retro-Riboswitches: Guanosyl-Induced Constitutional Switching of B12 Coenzymes. Chemistry 2008; 14:3605-19. [DOI: 10.1002/chem.200701365] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|
39
|
Santos F, Vera JL, van der Heijden R, Valdez G, de Vos WM, Sesma F, Hugenholtz J. The complete coenzyme B12 biosynthesis gene cluster of Lactobacillus reuteri CRL1098. MICROBIOLOGY-SGM 2008; 154:81-93. [PMID: 18174128 DOI: 10.1099/mic.0.2007/011569-0] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The coenzyme B(12) production pathway in Lactobacillus reuteri has been deduced using a combination of genetic, biochemical and bioinformatics approaches. The coenzyme B(12) gene cluster of Lb. reuteri CRL1098 has the unique feature of clustering together the cbi, cob and hem genes. It consists of 29 ORFs encoding the complete enzymic machinery necessary for de novo biosynthesis. Transcriptional analysis showed it to be expressed as two tandem transcripts of approximately 22 and 4 kb, carrying cobD, cbiABCDETFGHJ, cobA/hemD, cbiKLMNQOP, sirA, hemACBL, and cobUSC, hemD, cobT, respectively. Both transcripts appear to be similarly regulated, and under the conditions assayed are induced in the late-exponential growth phase. Evidence for a regulatory mechanism of negative feedback inhibition by vitamin B(12) itself was observed. Comparative genomics analysis of the coding sequences showed them to be most similar to those coding for the anaerobic coenzyme B(12) pathways previously characterized in a few representatives of the genera Listeria and Salmonella. This contrasts with the trusted species phylogeny and suggests horizontal gene transfer of the B(12) biosynthesis genes. G+C content and codon adaptation index analysis is suggestive that the postulated transfer of these genes was not a recent event. Additional comparative genomics and transcriptional analysis of the sequences acquired during this study suggests a functional link between coenzyme B(12) biosynthesis and reuterin production, which might be implicated in Lb. reuteri's success in colonizing the gastrointestinal tract. This information on gene organization, gene transcription and gene acquisition is relevant for the development of (fermented) foods and probiotics enriched in B(12).
Collapse
Affiliation(s)
- Filipe Santos
- Kluyver Centre for Genomics of Industrial Fermentation, TI Food and Nutrition, and NIZO Food Research, Kernhemseweg 2, PO Box 20, 6710 BA Ede, The Netherlands
| | - Jose L Vera
- Centro de Referencia para Lactobacilos (CERELA-CONICET), Chacabuco 145 (4000), San Miguel de Tucumán, Tucumán, Argentina
| | - René van der Heijden
- Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands
| | - Graciela Valdez
- Centro de Referencia para Lactobacilos (CERELA-CONICET), Chacabuco 145 (4000), San Miguel de Tucumán, Tucumán, Argentina
| | - Willem M de Vos
- Kluyver Centre for Genomics of Industrial Fermentation, TI Food and Nutrition, and NIZO Food Research, Kernhemseweg 2, PO Box 20, 6710 BA Ede, The Netherlands
| | - Fernando Sesma
- Centro de Referencia para Lactobacilos (CERELA-CONICET), Chacabuco 145 (4000), San Miguel de Tucumán, Tucumán, Argentina
| | - Jeroen Hugenholtz
- Kluyver Centre for Genomics of Industrial Fermentation, TI Food and Nutrition, and NIZO Food Research, Kernhemseweg 2, PO Box 20, 6710 BA Ede, The Netherlands
| |
Collapse
|
40
|
Li KT, Liu DH, Chu J, Wang YH, Zhuang YP, Zhang SL. An effective and simplified pH-stat control strategy for the industrial fermentation of vitamin B(12) by Pseudomonas denitrificans. Bioprocess Biosyst Eng 2008; 31:605-10. [PMID: 18320234 DOI: 10.1007/s00449-008-0209-5] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2007] [Accepted: 01/29/2008] [Indexed: 11/28/2022]
Abstract
In order to improve the productivity of vitamin B(12) by Pseudomonas denitrificans carried out in a 120-m(3) fermenter, the effect of pH on vitamin B(12) biosynthesis was investigated. Results obtained from shake flask experiments showed that the feeding of carbon source (beet molasses or glucose) and methyl-group donor (betaine or choline chloride) significantly influenced the pH and the biosynthesis of vitamin B(12). In contrast to beet molasses or choline chloride, using glucose as a feed medium and betaine as a methyl-group donor, pH could be maintained at a stable range. As a result, higher vitamin B(12) production was achieved. Accordingly, an effective and simplified pH-stat control strategy was established for the fermentation of vitamin B(12) in a 120-m(3) industrial fermenter. When the new pH control strategy was applied, pH was stably kept in the range of 7.15-7.30 during fermentation. Thus, 214.3 microg/mL of vitamin B(12) was achieved.
Collapse
Affiliation(s)
- Kun-Tai Li
- State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, People's Republic of China
| | | | | | | | | | | |
Collapse
|
41
|
Fan C, Bobik TA. The PduX enzyme of Salmonella enterica is an L-threonine kinase used for coenzyme B12 synthesis. J Biol Chem 2008; 283:11322-9. [PMID: 18308727 DOI: 10.1074/jbc.m800287200] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
Here, the PduX enzyme of Salmonella enterica is shown to be an L-threonine kinase used for the de novo synthesis of coenzyme B(12) and the assimilation of cobyric acid (Cby). PduX with a C-terminal His tag (PduX-His(6)) was produced at high levels in Escherichia coli, purified by nickel affinity chromatography, and partially characterized. (31)P NMR spectroscopy established that purified PduX-His(6) catalyzed the conversion of l-threonine and ATP to L-threonine-O-3-phosphate and ADP. Enzyme assays showed that ATP was the preferred substrate compared with GTP, CTP, or UTP. PduX displayed Michaelis-Menten kinetics with respect to both ATP and l-threonine and nonlinear regression was used to determine the following kinetic constants: V(max) = 62.1 +/- 3.6 nmol min(-1) mg of protein(-1); K(m)(, ATP) = 54.7 +/- 5.7 microm and K(m)(,Thr) = 146.1 +/- 8.4 microm. Growth studies showed that pduX mutants were impaired for the synthesis of coenzyme B(12) de novo and from Cby, but not from cobinamide, which was the expected phenotype for an L-threonine kinase mutant. The defect in Cby assimilation was corrected by ectopic expression of pduX or by supplementation of growth medium with L-threonine-O-3-phosphate, providing further support that PduX is an L-threonine kinase. In addition, a bioassay showed that a pduX mutant was impaired for the de novo synthesis of coenzyme B(12) as expected. Collectively, the genetic and biochemical studies presented here show that PduX is an L-threonine kinase used for AdoCbl synthesis. To our knowledge, PduX is the first enzyme shown to phosphorylate free L-threonine and the first L-threonine kinase shown to function in coenzyme B(12) synthesis.
Collapse
Affiliation(s)
- Chenguang Fan
- Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa 50011, USA
| | | |
Collapse
|
42
|
Soldermann CP, Vallinayagam R, Tzouros M, Neier R. Facile Synthesis of a “Ready to Use” Precursor of Porphobilinogen and Its Amino Acid Derivatives. J Org Chem 2007; 73:764-7. [DOI: 10.1021/jo702319n] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Carole Pissot Soldermann
- Institut de Chimie, Université de Neuchatel, Rue Emile-Argand 11, PO 158, CH-2009 Neuchatel, Switzerland
| | - Ramakrishnan Vallinayagam
- Institut de Chimie, Université de Neuchatel, Rue Emile-Argand 11, PO 158, CH-2009 Neuchatel, Switzerland
| | - Manuel Tzouros
- Institut de Chimie, Université de Neuchatel, Rue Emile-Argand 11, PO 158, CH-2009 Neuchatel, Switzerland
| | - Reinhard Neier
- Institut de Chimie, Université de Neuchatel, Rue Emile-Argand 11, PO 158, CH-2009 Neuchatel, Switzerland
| |
Collapse
|
43
|
Wang X, Wei L, Kotra LP. Cyanocobalamin (vitamin B12) conjugates with enhanced solubility. Bioorg Med Chem 2007; 15:1780-7. [PMID: 17161950 DOI: 10.1016/j.bmc.2006.11.036] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2006] [Revised: 11/20/2006] [Accepted: 11/27/2006] [Indexed: 11/18/2022]
Abstract
Cyanocobalamin (vitamin B12) is an essential nutrient as well as a very useful carrier in drug delivery. Conjugates of vitamin B12 are investigated due to their wide range of therapeutic applications. We report the synthesis of six vitamin B12 conjugates, and the effect of conjugation on their solubilities and stabilities in various media. We reveal here that vitamin B12 can be released readily if a 2'-hydroxyl group is conjugated rather than the 5'-hydroxyl group, and the solubility (thus the equivalents of vitamin B12) could be enhanced as much as 19-fold, by simple conjugates such as glycolates. Findings disclosed here provide insights into the reactivities of vitamin B12 conjugates, the design of future prodrugs and similar conjugated moieties using vitamin B12.
Collapse
Affiliation(s)
- Xiaoyang Wang
- Center for Molecular Design and Preformulations, Toronto General Research Institute, University Health Network, Toronto, Ont., Canada
| | | | | |
Collapse
|
44
|
Boiadjiev SE, Lightner DA. DIPYRRINONES-CONSTITUENTS OF THE PIGMENTS OF LIFE. A REVIEW. ORG PREP PROCED INT 2006. [DOI: 10.1080/00304940609355999] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
45
|
Banwell MG, Goodwin TE, Ng S, Smith JA, Wong DJ. Palladium‐Catalysed Cross‐Coupling and Related Reactions Involving Pyrroles. European J Org Chem 2006. [DOI: 10.1002/ejoc.200500911] [Citation(s) in RCA: 85] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Martin G. Banwell
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia, Fax: +61‐2‐6125‐8114
| | - Thomas E. Goodwin
- Department of Chemistry, Hendrix College, 1600 Washington Ave, Conway, AR 72032, USA
| | - Sarah Ng
- School of Chemistry, University of Tasmania, Hobart, TAS 7000, Australia
| | - Jason A. Smith
- School of Chemistry, University of Tasmania, Hobart, TAS 7000, Australia
| | - David J. Wong
- Research School of Chemistry, Institute of Advanced Studies, The Australian National University, Canberra, ACT 2601, Australia, Fax: +61‐2‐6125‐8114
| |
Collapse
|
46
|
Warren MJ. Finding the final pieces of the vitamin B12 biosynthetic jigsaw. Proc Natl Acad Sci U S A 2006; 103:4799-800. [PMID: 16567660 PMCID: PMC1458747 DOI: 10.1073/pnas.0601030103] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Martin J Warren
- Department of Biosciences, University of Kent, Canterbury, Kent CT2 7NJ, United Kingdom.
| |
Collapse
|
47
|
Walsh CT, Garneau-Tsodikova S, Howard-Jones AR. Biological formation of pyrroles: Nature's logic and enzymatic machinery. Nat Prod Rep 2006; 23:517-31. [PMID: 16874387 DOI: 10.1039/b605245m] [Citation(s) in RCA: 360] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Christopher T Walsh
- Department of Biological Chemistry & Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
| | | | | |
Collapse
|
48
|
Heldt D, Lawrence AD, Lindenmeyer M, Deery E, Heathcote P, Rigby SE, Warren MJ. Aerobic synthesis of vitamin B12: ring contraction and cobalt chelation. Biochem Soc Trans 2005; 33:815-9. [PMID: 16042605 DOI: 10.1042/bst0330815] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The aerobic biosynthetic pathway for vitamin B12 (cobalamin) biosynthesis is reviewed. Particular attention is focused on the ring contraction process, whereby an integral carbon atom of the tetrapyrrole-derived macrocycle is removed. Previous work had established that this chemically demanding step is facilitated by the action of a mono-oxygenase called CobG, which generates a hydroxy lactone intermediate. This mono-oxygenase contains both a non-haem iron and an Fe-S centre, but little information is known about its mechanism. Recent work has established that in bacteria such as Rhodobacter capsulatus, CobG is substituted by an isofunctional protein called CobZ. This protein has been shown to contain flavin, haem and Fe-S centres. A mechanism is proposed to explain the function of CobZ. Another interesting aspect of the aerobic cobalamin biosynthetic pathway is cobalt insertion, which displays some similarity to the process of magnesium chelation in chlorophyll synthesis. The genetic requirements of cobalt chelation and the subsequent reduction of the metal ion are discussed.
Collapse
Affiliation(s)
- D Heldt
- School of Biological Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, UK.
| | | | | | | | | | | | | |
Collapse
|
49
|
Frank S, Brindley AA, Deery E, Heathcote P, Lawrence AD, Leech HK, Pickersgill RW, Warren MJ. Anaerobic synthesis of vitamin B12: characterization of the early steps in the pathway. Biochem Soc Trans 2005; 33:811-4. [PMID: 16042604 DOI: 10.1042/bst0330811] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The anaerobic biosynthesis of vitamin B12 is slowly being unravelled. Recent work has shown that the first committed step along the anaerobic route involves the sirohydrochlorin (chelation of cobalt into factor II). The following enzyme in the pathway, CbiL, methylates cobalt-factor II to give cobalt-factor III. Recent progress on the molecular characterization of this enzyme has given a greater insight into its mode of action and specificity. Structural studies are being used to provide insights into how aspects of this highly complex biosynthetic pathway may have evolved. Between cobalt-factor III and cobyrinic acid, only one further intermediate has been identified. A combination of molecular genetics, recombinant DNA technology and bioorganic chemistry has led to some recent advances in assigning functions to the enzymes of the anaerobic pathway.
Collapse
Affiliation(s)
- S Frank
- School of Biological Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, UK.
| | | | | | | | | | | | | | | |
Collapse
|
50
|
Romanowski F, Mai G, Kusch D, Montforts FP, Bats JW. Stereoselektive Synthese des Nitrit-reduzierenden Cofaktors Häm d1ausgehend von Hämatoporphyrin. Helv Chim Acta 2004. [DOI: 10.1002/hlca.19960790607] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
|