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Wang Y, Shu D, Li Z, Luo D, Yang J, Chen D, Li T, Hou X, Yang Q, Tan H. Engineering strategies for enhanced 1', 4'-trans-ABA diol production by Botrytis cinerea. Microb Cell Fact 2024; 23:185. [PMID: 38926702 PMCID: PMC11210036 DOI: 10.1186/s12934-024-02460-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 06/17/2024] [Indexed: 06/28/2024] Open
Abstract
BACKGROUND Currently, industrial fermentation of Botrytis cinerea is a significant source of abscisic acid (ABA). The crucial role of ABA in plants and its wide range of applications in agricultural production have resulted in the constant discovery of new derivatives and analogues. While modifying the ABA synthesis pathway of existing strains to produce ABA derivatives is a viable option, it is hindered by the limited synthesis capacity of these strains, which hinders further development and application. RESULTS In this study, we knocked out the bcaba4 gene of B. cinerea TB-31 to obtain the 1',4'-trans-ABA-diol producing strain ZX2. We then studied the fermentation broth of the batch-fed fermentation of the ZX2 strain using metabolomic analysis. The results showed significant accumulation of 3-hydroxy-3-methylglutaric acid, mevalonic acid, and mevalonolactone during the fermentation process, indicating potential rate-limiting steps in the 1',4'-trans-ABA-diol synthesis pathway. This may be hindering the flow of the synthetic pathway. Additionally, analysis of the transcript levels of terpene synthesis pathway genes in this strain revealed a correlation between the bchmgr, bcerg12, and bcaba1-3 genes and 1',4'-trans-ABA-diol synthesis. To further increase the yield of 1',4'-trans-ABA-diol, we constructed a pCBg418 plasmid suitable for the Agrobacterium tumefaciens-mediated transformation (ATMT) system and transformed it to obtain a single-gene overexpression strain. We found that overexpression of bchmgr, bcerg12, bcaba1, bcaba2, and bcaba3 genes increased the yield of 1',4'-trans-ABA-diol. The highest yielding ZX2 A3 strain was eventually screened, which produced a 1',4'-trans-ABA-diol concentration of 7.96 mg/g DCW (54.4 mg/L) in 144 h of shake flask fermentation. This represents a 2.1-fold increase compared to the ZX2 strain. CONCLUSIONS We utilized metabolic engineering techniques to alter the ABA-synthesizing strain B. cinerea, resulting in the creation of the mutant strain ZX2, which has the ability to produce 1',4'-trans-ABA-diol. By overexpressing the crucial genes involved in the 1',4'-trans-ABA-diol synthesis pathway in ZX2, we observed a substantial increase in the production of 1',4'-trans-ABA-diol.
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Affiliation(s)
- Yifan Wang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Dan Shu
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China.
| | - Zhemin Li
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Di Luo
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Jie Yang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Dongbo Chen
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Tianfu Li
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Xiaonan Hou
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Qi Yang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hong Tan
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China.
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Roussin-Léveillée C, Mackey D, Ekanayake G, Gohmann R, Moffett P. Extracellular niche establishment by plant pathogens. Nat Rev Microbiol 2024; 22:360-372. [PMID: 38191847 DOI: 10.1038/s41579-023-00999-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/21/2023] [Indexed: 01/10/2024]
Abstract
The plant extracellular space, referred to as the apoplast, is inhabited by a variety of microorganisms. Reflecting the crucial nature of this compartment, both plants and microorganisms seek to control, exploit and respond to its composition. Upon sensing the apoplastic environment, pathogens activate virulence programmes, including the delivery of effectors with well-established roles in suppressing plant immunity. We posit that another key and foundational role of effectors is niche establishment - specifically, the manipulation of plant physiological processes to enrich the apoplast in water and nutritive metabolites. Facets of plant immunity counteract niche establishment by restricting water, nutrients and signals for virulence activation. The complex competition to control and, in the case of pathogens, exploit the apoplast provides remarkable insights into the nature of virulence, host susceptibility, host defence and, ultimately, the origin of phytopathogenesis. This novel framework focuses on the ecology of a microbial niche and highlights areas of future research on plant-microorganism interactions.
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Affiliation(s)
| | - David Mackey
- Department of Horticulture and Crop Science, The Ohio State University, Columbus, OH, USA.
- Department of Molecular Genetics, The Ohio State University, Columbus, OH, USA.
- Center for Applied Plant Sciences, The Ohio State University, Columbus, OH, USA.
| | - Gayani Ekanayake
- Department of Horticulture and Crop Science, The Ohio State University, Columbus, OH, USA
| | - Reid Gohmann
- Department of Horticulture and Crop Science, The Ohio State University, Columbus, OH, USA
| | - Peter Moffett
- Centre SÈVE, Département de Biologie, Université de Sherbrooke, Sherbrooke, Québec, Canada.
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Liu L, Zhao K, Liu Z. Construction and Regulation of the Abscisic Acid Biosynthesis Pathway in Yarrowia lipolytica. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:7299-7307. [PMID: 38504621 DOI: 10.1021/acs.jafc.4c00223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/21/2024]
Abstract
Abscisic acid (ABA) is an important plant hormone with a variety of physiological functions such as regulating plant growth and helping plants to resist an adverse growth environment. However, at present, the ABA yield of heterologous biosynthesis by metabolic engineering is still low for industrial production. Therefore, five Botrytis cinerea genes (bcaba1, bcaba2, bcaba3, bcaba4, and bccpr1) related to ABA biosynthesis were expressed in Yarrowia lipolytica PO1h; its ABA production was 24.33 mg/L. By increasing the copy number of IDI and ERG12S, ERG20YMT, and bcaba3, bcaba1 genes, the yield of ABA was increased to 54.51 mg/L. By locating HMG-CoA reductase and HMG-CoA synthase in mitochondria, acetyl-CoA in mitochondria was converted into mevalonate; this increased the ABA yield to 102.12 mg/L. Finally, in the fed-batch fermentation process with the addition of dodecane, the ABA yield was up to 1212.57 mg/L, which is the highest yield of heterologous production of ABA by metabolic engineering.
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Affiliation(s)
- Lilu Liu
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, PR China
- Qingdao Key Laboratory of Food Biotechnology, Qingdao 266404, PR China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, PR China
| | - Kaiyuan Zhao
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, PR China
- Qingdao Key Laboratory of Food Biotechnology, Qingdao 266404, PR China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, PR China
| | - Zhen Liu
- State Key Laboratory of Marine Food Processing and Safety Control, College of Food Science and Engineering, Ocean University of China, Qingdao 266404, PR China
- Qingdao Key Laboratory of Food Biotechnology, Qingdao 266404, PR China
- Key Laboratory of Biological Processing of Aquatic Products, China National Light Industry, Qingdao 266404, PR China
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Hiruma K, Aoki S, Takino J, Higa T, Utami YD, Shiina A, Okamoto M, Nakamura M, Kawamura N, Ohmori Y, Sugita R, Tanoi K, Sato T, Oikawa H, Minami A, Iwasaki W, Saijo Y. A fungal sesquiterpene biosynthesis gene cluster critical for mutualist-pathogen transition in Colletotrichum tofieldiae. Nat Commun 2023; 14:5288. [PMID: 37673872 PMCID: PMC10482981 DOI: 10.1038/s41467-023-40867-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Accepted: 08/11/2023] [Indexed: 09/08/2023] Open
Abstract
Plant-associated fungi show diverse lifestyles from pathogenic to mutualistic to the host; however, the principles and mechanisms through which they shift the lifestyles require elucidation. The root fungus Colletotrichum tofieldiae (Ct) promotes Arabidopsis thaliana growth under phosphate limiting conditions. Here we describe a Ct strain, designated Ct3, that severely inhibits plant growth. Ct3 pathogenesis occurs through activation of host abscisic acid pathways via a fungal secondary metabolism gene cluster related to the biosynthesis of sesquiterpene metabolites, including botrydial. Cluster activation during root infection suppresses host nutrient uptake-related genes and changes mineral contents, suggesting a role in manipulating host nutrition state. Conversely, disruption or environmental suppression of the cluster renders Ct3 beneficial for plant growth, in a manner dependent on host phosphate starvation response regulators. Our findings indicate that a fungal metabolism cluster provides a means by which infectious fungi modulate lifestyles along the parasitic-mutualistic continuum in fluctuating environments.
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Affiliation(s)
- Kei Hiruma
- Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan.
- Department of Science and Technology, Nara Institute of Science and Technology, Nara, 630-0192, Japan.
| | - Seishiro Aoki
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-0882, Japan
| | - Junya Takino
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo, 060-0810, Japan
| | - Takeshi Higa
- Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan
| | - Yuniar Devi Utami
- Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan
| | - Akito Shiina
- Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan
| | - Masanori Okamoto
- Center for Bioscience Research and Education, Utsunomiya University, 350 Mine-cho, Utsunomiya, Tochigi, 321-8505, Japan
| | - Masami Nakamura
- Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1, Komaba, Meguro-ku, Tokyo, 153-8902, Japan
| | - Nanami Kawamura
- Department of Science and Technology, Nara Institute of Science and Technology, Nara, 630-0192, Japan
| | - Yoshihiro Ohmori
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Ryohei Sugita
- Radioisotope Research Center, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8602, Japan
| | - Keitaro Tanoi
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Toyozo Sato
- Genetic Resources Center, National Agriculture and Food Research Organization, Ibaraki, 305-8602, Japan
| | - Hideaki Oikawa
- Innovation Center of Marine Biotechnology and Pharmaceuticals, School of Biotechnology and Health Sciences, Wuyi University, Jiangmen, Guangdong, 529020, China
| | - Atsushi Minami
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10, Nishi 8, Kita-ku, Sapporo, 060-0810, Japan
| | - Wataru Iwasaki
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, 277-0882, Japan
| | - Yusuke Saijo
- Department of Science and Technology, Nara Institute of Science and Technology, Nara, 630-0192, Japan
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Chen D, Shu D, Wei Z, Luo D, Yang J, Li Z, Tan H. Combined transcriptome and proteome analysis of Bcfrp1 involved in regulating the biosynthesis of abscisic acid and growth in Botrytis cinerea TB-31. Front Microbiol 2023; 13:1085000. [PMID: 36777027 PMCID: PMC9909433 DOI: 10.3389/fmicb.2022.1085000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 12/23/2022] [Indexed: 01/27/2023] Open
Abstract
Introduction Abscisic acid (ABA) is an important sesquiterpene compound that regulates the stress resistance of plants. Botrytis cinerea can synthesize ABA via the mevalonic acid pathway. To identify the functional genes that are involved in the biosynthesis of ABA, we performed insertion mutagenesis into B. cinerea TB-31. Methods We obtained the ABA-reduced mutant E154 by insertion mutagenesis, and we identified the insertion site was located upstream of the gene bcfrp1 by Thermal asymmetric interlaced PCR. We performed a detailed phenotypic characterization of the bcfrp1 knockout and complementation mutants in TB-31. Furthermore, transcriptome and proteome analyses were conducted to explore how bcfrp1 affects the level of the ABA biosynthesis. Results The bcfrp1 gene encodes an F-box protein. The phenotypic results confirmed the positive contribution of bcfrp1 to the biosynthesis of ABA and growth. Between TB-31 and ΔBcfrp1, we obtained 4,128 and 1,073 differentially expressed genes and proteins, respectively. The impaired ABA biosynthesis in the ΔBcfrp1 mutants was primarily affected by the different levels of expression of the ABA biosynthetic gene cluster and the genes involved in the mevalonic acid pathway. In addition, we further characterized the differentially expressed genes and proteins that participated in the growth, secondary metabolism, and signal transduction in B. cinerea based on the transcriptome and proteome data. Discussion This research based on the transcriptome and proteome analyses to display the changes after the deletion of bcfrp1 in B. cinerea TB-31, will help us to explore the molecular mechanism of ABA biosynthesis in B. cinerea.
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Affiliation(s)
- Dongbo Chen
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China,Chengdu Institute of Biology, China Academy of Sciences (CAS), University of the Chinese Academy of Sciences, Chengdu, China
| | - Dan Shu
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China,*Correspondence: Dan Shu, ✉
| | - Zhao Wei
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China,Chengdu Institute of Biology, China Academy of Sciences (CAS), University of the Chinese Academy of Sciences, Chengdu, China
| | - Di Luo
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Jie Yang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Zhemin Li
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Hong Tan
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China,Hong Tan, ✉
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da Silva Ripardo-Filho H, Coca Ruíz V, Suárez I, Moraga J, Aleu J, Collado IG. From Genes to Molecules, Secondary Metabolism in Botrytis cinerea: New Insights into Anamorphic and Teleomorphic Stages. PLANTS (BASEL, SWITZERLAND) 2023; 12:553. [PMID: 36771642 PMCID: PMC9920419 DOI: 10.3390/plants12030553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Revised: 12/22/2022] [Accepted: 01/23/2023] [Indexed: 06/18/2023]
Abstract
The ascomycete Botrytis cinerea Pers. Fr., classified within the family Sclerotiniaceae, is the agent that causes grey mould disease which infects at least 1400 plant species, including crops of economic importance such as grapes and strawberries. The life cycle of B. cinerea consists of two phases: asexual (anamorph, Botrytis cinerea Pers. Fr.) and sexual (teleomorph, Botryotinia fuckeliana (de Bary) Wetzel). During the XVI International Symposium dedicated to the Botrytis fungus, which was held in Bari in June 2013, the scientific community unanimously decided to assign the most widely used name of the asexual form, Botrytis, to this genus of fungi. However, in the literature, we continue to find articles referring to both morphic stages. In this review, we take stock of the genes and metabolites reported for both morphic forms of B. cinerea between January 2015 and October 2022.
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Affiliation(s)
| | - Víctor Coca Ruíz
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
- Instituto de Investigación en Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
| | - Ivonne Suárez
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
- Departamento de Biomedicina, Biotecnología y Salud Pública, Laboratorio de Microbiología, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
- Instituto de Investigación en Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
| | - Javier Moraga
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
- Departamento de Biomedicina, Biotecnología y Salud Pública, Laboratorio de Microbiología, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
- Instituto de Investigación en Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
| | - Josefina Aleu
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
- Instituto de Investigación en Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
| | - Isidro G. Collado
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
- Instituto de Investigación en Biomoléculas (INBIO), Universidad de Cádiz, Puerto Real, 11510 Cádiz, Spain
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Liu X, Zhou X, Li D, Hong B, Gao J, Zhang Z. Rose WRKY13 promotes disease protection to Botrytis by enhancing cytokinin content and reducing abscisic acid signaling. PLANT PHYSIOLOGY 2023; 191:679-693. [PMID: 36271872 PMCID: PMC9806554 DOI: 10.1093/plphys/kiac495] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 09/25/2022] [Indexed: 06/16/2023]
Abstract
The plant hormones cytokinin (CK) and abscisic acid (ABA) play critical and often opposite roles during plant growth, development, and responses to abiotic and biotic stresses. Rose (Rosa sp.) is an economically important ornamental crop sold as cut flowers. Rose petals are extremely susceptible to gray mold disease caused by the necrotrophic fungal pathogen Botrytis cinerea. The infection of rose petals by B. cinerea leads to tissue collapse and rot, causing severe economic losses. In this study, we showed that CK and ABA play opposite roles in the susceptibility of rose to B. cinerea. Treatment with CK enhanced the disease protection of rose petals to B. cinerea, while ABA promoted disease progression. We further demonstrated that rose flowers activate CK-mediated disease protection via a B. cinerea-induced rose transcriptional repressor, Rosa hybrida (Rh)WRKY13, which is an ortholog of Arabidopsis (Arabidopsis thaliana), AtWRKY40. RhWRKY13 binds to promoter regions of the CK degradation gene CKX3 (RhCKX3) and the ABA-response gene ABA insensitive4 (RhABI4), leading to simultaneous inhibition of their expression in rose petals. The increased CK content and reduced ABA responses result in enhanced protection from B. cinerea. Collectively, these data reveal opposite roles for CK and ABA in the susceptibility of rose petals against B. cinerea infection, which is mediated by B. cinerea-induced RhWRKY13 expression.
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Affiliation(s)
- Xintong Liu
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing 100083, China
| | - Xiaofeng Zhou
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing 100083, China
| | - Dandan Li
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing 100083, China
| | - Bo Hong
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing 100083, China
| | - Junping Gao
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing 100083, China
| | - Zhao Zhang
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing 100083, China
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Arnesen JA, Jacobsen IH, Dyekjær JD, Rago D, Kristensen M, Klitgaard AK, Randelovic M, Martinez JL, Borodina I. Production of abscisic acid in the oleaginous yeast Yarrowia lipolytica. FEMS Yeast Res 2022; 22:foac015. [PMID: 35274684 PMCID: PMC8992728 DOI: 10.1093/femsyr/foac015] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 02/24/2022] [Accepted: 03/09/2022] [Indexed: 11/14/2022] Open
Abstract
Abscisic acid (ABA) is a phytohormone with applications in agriculture and human health. ABA can be produced by Botrytis cinerea, a plant pathogenic filamentous fungus. However, the cultivation process is lengthy and strain improvement by genetic engineering is difficult. Therefore, we engineered the oleaginous yeast Yarrowia lipolytica as an alternative host for ABA production. First, we expressed five B. cinerea genes involved in ABA biosynthesis (BcABA1,BcABA2,BcABA3,BcABA4 and BcCPR1) in a Y. lipolytica chassis with optimized mevalonate flux. The strain produced 59.2 mg/L of ABA in small-scale cultivation. Next, we expressed an additional copy of each gene in the strain, but only expression of additional copy of BcABA1 gene increased the ABA titer to 168.5 mg/L. We then integrated additional copies of the mevalonate pathway and ABA biosynthesis encoding genes, and we expressed plant ABA transporters resulting in an improved strain producing 263.5 mg/L and 9.1 mg/g dry cell weight (DCW) ABA. Bioreactor cultivation resulted in a specific yield of 12.8 mg/g DCW ABA; however, surprisingly, the biomass level obtained in bioreactors was only 10.5 g DCW/L, with a lower ABA titer of 133.6 mg/L. While further optimization is needed, this study confirms Y. lipolytica as a potential alternative host for the ABA production.
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Affiliation(s)
- Jonathan Asmund Arnesen
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet 220, 2800 Kgs Lyngby, Denmark
| | - Irene Hjorth Jacobsen
- Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 223, 2800 Kgs Lyngby, Denmark
| | - Jane Dannow Dyekjær
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet 220, 2800 Kgs Lyngby, Denmark
| | - Daniela Rago
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet 220, 2800 Kgs Lyngby, Denmark
| | - Mette Kristensen
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet 220, 2800 Kgs Lyngby, Denmark
| | - Andreas Koedfoed Klitgaard
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet 220, 2800 Kgs Lyngby, Denmark
| | - Milica Randelovic
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet 220, 2800 Kgs Lyngby, Denmark
| | - José Luis Martinez
- Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 223, 2800 Kgs Lyngby, Denmark
| | - Irina Borodina
- The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet 220, 2800 Kgs Lyngby, Denmark
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Wu D, Wang L, Zhang Y, Bai L, Yu F. Emerging roles of pathogen-secreted host mimics in plant disease development. Trends Parasitol 2021; 37:1082-1095. [PMID: 34627670 DOI: 10.1016/j.pt.2021.09.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 09/17/2021] [Accepted: 09/21/2021] [Indexed: 11/19/2022]
Abstract
Plant pathogens and parasites use multiple virulence factors to successfully infect plants. While most plant-pathogen interaction studies focus on pathogen effectors and their functions in suppressing plant immunity or interfering with normal cellular processes, other virulence factors likely also contribute. Here we highlight another important strategy used by pathogens to promote virulence: secretion of mimics of host molecules, including peptides, phytohormones, and small RNAs, which play diverse roles in plant development and stress responses. Pathogen-secreted mimics hijack the host endogenous signaling pathways, thereby modulating host cellular functions to the benefit of the pathogen and promoting infection. Understanding the mechanisms of pathogen-secreted host mimics will expand our knowledge of host-pathogen coevolution and interactions, while providing new targets for plant disease control.
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Affiliation(s)
- Dousheng Wu
- Hunan Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410082, China
| | - Lifeng Wang
- Hunan Weed Science Key Laboratory, Hunan Academy of Agricultural Sciences, Changsha, 410125, China
| | - Yong Zhang
- College of Resources and Environment, Southwest University, Beibei, Chongqing, 400715, China
| | - Lianyang Bai
- Hunan Weed Science Key Laboratory, Hunan Academy of Agricultural Sciences, Changsha, 410125, China.
| | - Feng Yu
- Hunan Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410082, China.
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Liu T, Li CX, Zhong J, Shu D, Luo D, Li ZM, Zhou JY, Yang J, Tan H, Ma XR. Exogenous 1',4'- trans-Diol-ABA Induces Stress Tolerance by Affecting the Level of Gene Expression in Tobacco ( Nicotiana tabacum L.). Int J Mol Sci 2021; 22:2555. [PMID: 33806336 PMCID: PMC7961390 DOI: 10.3390/ijms22052555] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2021] [Revised: 02/26/2021] [Accepted: 02/27/2021] [Indexed: 02/06/2023] Open
Abstract
1',4'-trans-diol-ABA is a key precursor of the biosynthesis of abscisic acid (ABA) biosynthesis in fungi. We successfully obtained the pure compound from a mutant of Botrytis cinerea and explored its function and possible mechanism on plants by spraying 2 mg/L 1',4'-trans-diol-ABA on tobacco leaves. Our results showed that this compound enhanced the drought tolerance of tobacco seedlings. A comparative transcriptome analysis showed that a large number of genes responded to the compound, exhibiting 1523 genes that were differentially expressed at 12 h, which increased to 1993 at 24 h and 3074 at 48 h, respectively. The enrichment analysis demonstrated that the differentially expressed genes (DEGs) were primarily enriched in pathways related to hormones and resistance. The DEGs of transcription factors were generally up-regulated and included the bHLH, bZIP, ERF, MYB, NAC, WRKY and HSF families. Moreover, the levels of expression of PYL/PYR, PP2C, SnRK2, and ABF at the ABA signaling pathway responded positively to exogenous 1',4'-trans-diol-ABA. Among them, seven ABF transcripts that were detected were significantly up-regulated. In addition, the genes involved in salicylic acid, ethylene and jasmonic acid pathways, reactive oxygen species scavenging system, and other resistance related genes were primarily induced by 1',4'-trans-diol-ABA. These findings indicated that treatment with 1',4'-trans-diol-ABA could improve tolerance to plant abiotic stress and potential biotic resistance by regulating gene expression, similar to the effects of exogenous ABA.
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Affiliation(s)
- Teng Liu
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
- College of Life Sciences, Sichuan University, Chengdu 610041, China
- University of Chinese Academy of sciences, Beijing 100049, China
| | - Cai-Xia Li
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Juan Zhong
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Dan Shu
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Di Luo
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Zhe-Min Li
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Jin-Yan Zhou
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Jie Yang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Hong Tan
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
| | - Xin-Rong Ma
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Innovation Academy for Seed Design, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; (T.L.); (C.-X.L.); (J.Z.); (D.S.); (D.L.); (Z.-M.L.); (J.-Y.Z.); (J.Y.)
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Kamaruzzaman M, Wang Z, Wu M, Yang L, Han Y, Li G, Zhang J. Promotion of tomato growth by the volatiles produced by the hypovirulent strain QT5-19 of the plant gray mold fungus Botrytis cinerea. Microbiol Res 2021; 247:126731. [PMID: 33676312 DOI: 10.1016/j.micres.2021.126731] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 01/05/2021] [Accepted: 02/17/2021] [Indexed: 10/22/2022]
Abstract
Our previous study identified a hypovirulent strain QT5-19 of Botrytis cinerea, the causal agent of the plant gray mold disease, and found that QT5-19 can produce volatile organic compounds (VOCs) with high antifungal activity and high control efficacy against B. cinerea. However, impact of the QT5-19 VOCs on plant growth remains unknown. This study was conducted to investigate the impact of the QT5-19 VOCs on tomato growth, and to elucidate the mechanisms for the plant growth-promoting (PGP) activity of the QT5-19 VOCs. Results showed that compared to the control treatment, the QT5-19 VOCs significantly (P < 0.05) promoted tomato growth, and the PGP activity of the QT5-19 VOCs acted in dose- and time-dependent manners. Results also showed that the values of photosynthetic assimilation, stomatal conductance and transpiration, water use efficiency and chlorophyll content in the treatments of the QT5-19 VOCs were significantly (P < 0.05) higher than the corresponding values in the control treatment. The QT5-19 VOCs up-regulated expression of the genes for expansins (EXP2, EXP9 and EXP18), IAA (SlIAA1, SlIAA3 and SlIAA9), cytokinins (SlCKX1) and gibberellins in leaves and/or roots, whereas down-regulated expression of the gene ACO1 for ethylene in both organs. Moreover, enhanced accumulation of auxins and decreased accumulation of ethylene were observed in tomato roots in the treatment of the QT5-19 VOCs, compared to the control treatment. These results suggest that the QT5-19 VOCs probably promote tomato growth through improving photosynthesis and biosynthesis of expansins and IAA, and reducing ethylene biosynthesis. This study suggests that QT5-19 is a versatile biocontrol control agent.
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Affiliation(s)
- Md Kamaruzzaman
- State Key Laboratory of Agricultural Microbiology and Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Ze Wang
- State Key Laboratory of Agricultural Microbiology and Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Mingde Wu
- State Key Laboratory of Agricultural Microbiology and Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Long Yang
- State Key Laboratory of Agricultural Microbiology and Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Yongchao Han
- Institute of Industrial Crops, Hubei Academy of Agricultural Science, Wuhan, 430070, Hubei, China
| | - Guoqing Li
- State Key Laboratory of Agricultural Microbiology and Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Jing Zhang
- State Key Laboratory of Agricultural Microbiology and Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.
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12
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Eichmann R, Richards L, Schäfer P. Hormones as go-betweens in plant microbiome assembly. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 105:518-541. [PMID: 33332645 PMCID: PMC8629125 DOI: 10.1111/tpj.15135] [Citation(s) in RCA: 77] [Impact Index Per Article: 25.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 12/10/2020] [Accepted: 12/11/2020] [Indexed: 05/04/2023]
Abstract
The interaction of plants with complex microbial communities is the result of co-evolution over millions of years and contributed to plant transition and adaptation to land. The ability of plants to be an essential part of complex and highly dynamic ecosystems is dependent on their interaction with diverse microbial communities. Plant microbiota can support, and even enable, the diverse functions of plants and are crucial in sustaining plant fitness under often rapidly changing environments. The composition and diversity of microbiota differs between plant and soil compartments. It indicates that microbial communities in these compartments are not static but are adjusted by the environment as well as inter-microbial and plant-microbe communication. Hormones take a crucial role in contributing to the assembly of plant microbiomes, and plants and microbes often employ the same hormones with completely different intentions. Here, the function of hormones as go-betweens between plants and microbes to influence the shape of plant microbial communities is discussed. The versatility of plant and microbe-derived hormones essentially contributes to the creation of habitats that are the origin of diversity and, thus, multifunctionality of plants, their microbiota and ultimately ecosystems.
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Affiliation(s)
- Ruth Eichmann
- Institute of Molecular BotanyUlm UniversityUlm89069Germany
| | - Luke Richards
- School of Life SciencesUniversity of WarwickCoventryCV4 7ALUK
| | - Patrick Schäfer
- Institute of Molecular BotanyUlm UniversityUlm89069Germany
- School of Life SciencesUniversity of WarwickCoventryCV4 7ALUK
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13
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Hagee D, Abu Hardan A, Botero J, Arnone JT. Genomic clustering within functionally related gene families in Ascomycota fungi. Comput Struct Biotechnol J 2020; 18:3267-3277. [PMID: 33209211 PMCID: PMC7653285 DOI: 10.1016/j.csbj.2020.10.020] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Revised: 10/15/2020] [Accepted: 10/17/2020] [Indexed: 12/17/2022] Open
Abstract
Multiple mechanisms collaborate for proper regulation of gene expression. One layer of this regulation is through the clustering of functionally related genes at discrete loci throughout the genome. This phenomenon occurs extensively throughout Ascomycota fungi and is an organizing principle for many gene families whose proteins participate in diverse molecular functions throughout the cell. Members of this phylum include organisms that serve as model systems and those of interest medically, pharmaceutically, and for industrial and biotechnological applications. In this review, we discuss the prevalence of functional clustering through a broad range of organisms within the phylum. Position effects on transcription, genomic locations of clusters, transcriptional regulation of clusters, and selective pressures contributing to the formation and maintenance of clusters are addressed, as are common methods to identify and characterize clusters.
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Affiliation(s)
- Danielle Hagee
- Department of Biology, William Paterson University, Wayne, NJ 07470, USA
| | - Ahmad Abu Hardan
- Department of Biology, William Paterson University, Wayne, NJ 07470, USA
| | - Juan Botero
- Department of Biology, William Paterson University, Wayne, NJ 07470, USA
| | - James T. Arnone
- Department of Biology, William Paterson University, Wayne, NJ 07470, USA
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14
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Shi L, Ge B, Wang J, Liu B, Ma J, Wei Q, Zhang K. iTRAQ-based proteomic analysis reveals the mechanisms of Botrytis cinerea controlled with Wuyiencin. BMC Microbiol 2019; 19:280. [PMID: 31829181 PMCID: PMC6907358 DOI: 10.1186/s12866-019-1675-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Accepted: 12/04/2019] [Indexed: 01/24/2023] Open
Abstract
Background Grey mould is an important plant disease worldwide, caused by Botrytis cinerea, resulting in serious economic loss. Wuyiencin, a low toxicity, high efficiency, and broad-spectrum agricultural antibiotic, has been demonstrated effectiveness against B. cinerea. Results Wuyiencin treatment inhibited growth and sporulation of B. cinerea, specifically altering hypha morphology and intracellular structures. These changes were accompanied by differential expression (fold change > 2.0) of 316 proteins identified by iTRAQ-labelling LC-MS/MS analysis (P < 0.05). Up-regulation of 14 proteins, including carbohydrate metabolism proteins and cell wall stabilization proteins, was validated by parallel reaction monitoring (PRM). Down-regulation of 13 proteins was validated by PRM, including regulators of energy metabolism, nucleotide/protein synthesis, and the biosynthesis of mediators of plant stress and decay. Conclusion Our results confirm the inhibitory biological effects of wuyiencin on B. cinereal and elaborate on the differentially expressed proteins and associated pathways implicated in the capacity of wuyiencin to debilitate the growth and pathogenicity of grey mould. This study provides validated candidates for further targeted exploration with the goal of optimizing wuyiencin as a safe, low-toxicity agent for biological control.
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Affiliation(s)
- Liming Shi
- State Key Laboratory of Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China
| | - Beibei Ge
- State Key Laboratory of Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China
| | - Jinzi Wang
- Guangxi Key Laboratory of Utilization of Microbial and Botanical Resources, Guangxi Key Laboratory for Polysaccharide Materials and Modifications, School of Marine Sciences and Biotechnology, Guangxi University for Nationalities, Nanning, People's Republic of China
| | - Binghua Liu
- State Key Laboratory of Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China
| | - Jinjin Ma
- State Key Laboratory of Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China
| | - Qiuhe Wei
- State Key Laboratory of Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China
| | - Kecheng Zhang
- State Key Laboratory of Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, People's Republic of China.
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15
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Kumar M, Kesawat MS, Ali A, Lee SC, Gill SS, Kim HU. Integration of Abscisic Acid Signaling with Other Signaling Pathways in Plant Stress Responses and Development. PLANTS (BASEL, SWITZERLAND) 2019; 8:E592. [PMID: 31835863 PMCID: PMC6963649 DOI: 10.3390/plants8120592] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Revised: 11/26/2019] [Accepted: 12/10/2019] [Indexed: 12/30/2022]
Abstract
Plants are immobile and, to overcome harsh environmental conditions such as drought, salt, and cold, they have evolved complex signaling pathways. Abscisic acid (ABA), an isoprenoid phytohormone, is a critical signaling mediator that regulates diverse biological processes in various organisms. Significant progress has been made in the determination and characterization of key ABA-mediated molecular factors involved in different stress responses, including stomatal closure and developmental processes, such as seed germination and bud dormancy. Since ABA signaling is a complex signaling network that integrates with other signaling pathways, the dissection of its intricate regulatory network is necessary to understand the function of essential regulatory genes involved in ABA signaling. In the present review, we focus on two aspects of ABA signaling. First, we examine the perception of the stress signal (abiotic and biotic) and the response network of ABA signaling components that transduce the signal to the downstream pathway to respond to stress tolerance, regulation of stomata, and ABA signaling component ubiquitination. Second, ABA signaling in plant development processes, such as lateral root growth regulation, seed germination, and flowering time regulation is investigated. Examining such diverse signal integration dynamics could enhance our understanding of the underlying genetic, biochemical, and molecular mechanisms of ABA signaling networks in plants.
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Affiliation(s)
- Manu Kumar
- Department of Bioindustry and Bioresource Engineering, Plant Engineering Research Institute, Sejong University, Seoul 05006, Korea
| | | | - Asjad Ali
- Southern Cross Plant Science, Southern Cross University, East Lismore NSW 2480, Australia;
| | | | - Sarvajeet Singh Gill
- Stress Physiology and Molecular Biology Lab, Centre for Biotechnology, MD University, Rohtak 124001, India;
| | - Hyun Uk Kim
- Department of Bioindustry and Bioresource Engineering, Plant Engineering Research Institute, Sejong University, Seoul 05006, Korea
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16
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Behrens FH, Schenke D, Hossain R, Ye W, Schemmel M, Bergmann T, Häder C, Zhao Y, Ladewig L, Zhu W, Cai D. Suppression of abscisic acid biosynthesis at the early infection stage of Verticillium longisporum in oilseed rape (Brassica napus). MOLECULAR PLANT PATHOLOGY 2019; 20:1645-1661. [PMID: 31603283 PMCID: PMC6859492 DOI: 10.1111/mpp.12867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Verticillium longisporum infects oilseed rape (Brassica napus) and Arabidopsis thaliana. To investigate the early response of oilseed rape to the fungal infection, we determined transcriptomic changes in oilseed rape roots at 6 days post-inoculation (dpi) by RNA-Seq analysis, in which non-infected roots served as a control. Strikingly, a subset of genes involved in abscisic acid (ABA) biosynthesis was found to be down-regulated and the ABA level was accordingly attenuated in 6 dpi oilseed rape as compared with the control. Gene expression analysis revealed that this was mainly attributed to the suppression of BnNCED3-mediated ABA biosynthesis, involving, for example, BnWRKY57. However, this down-regulation of ABA biosynthesis could not be observed in infected Arabidopsis roots. Arabidopsis ABA- defective mutants nced3 and aao3 displayed pronounced tolerance to the fungal infection with delayed and impeded symptom development, even though fungal colonization was not affected in both mutants. These data suggest that ABA appears to be required for full susceptibility of Arabidopsis to the fungal infection. Furthermore, we found that in both 6 dpi oilseed rape and the Arabidopsis nced3 mutant, the salicylic acid (SA) signalling pathway was induced while the jasmonic acid (JA)/ethylene (ET) signalling pathway was concomitantly mitigated. Following these data, we conclude that in oilseed rape the V. longisporum infection triggers a host-specific suppression of the NCED3-mediated ABA biosynthesis, consequently increasing plant tolerance to the fungal infection. We believe that this might be part of the virulence strategy of V. longisporum to initiate/establish a long-lasting compatible interaction with oilseed rape (coexistence), which appears to be different from the infection process in Arabidopsis.
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Affiliation(s)
- Falk H. Behrens
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Dirk Schenke
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Roxana Hossain
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Wanzhi Ye
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Markus Schemmel
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Thomas Bergmann
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Claudia Häder
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Yan Zhao
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Lena Ladewig
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Wenxuan Zhu
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
| | - Daguang Cai
- Institute of PhytopathologyDepartment of Molecular Phytopathology and BiotechnologyChristian‐Albrechts‐University of KielHermann Rodewald Str. 9D‐24118KielGermany
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Otto M, Teixeira PG, Vizcaino MI, David F, Siewers V. Integration of a multi-step heterologous pathway in Saccharomyces cerevisiae for the production of abscisic acid. Microb Cell Fact 2019; 18:205. [PMID: 31767000 PMCID: PMC6876084 DOI: 10.1186/s12934-019-1257-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Accepted: 11/15/2019] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND The sesquiterpenoid abscisic acid (ABA) is mostly known for regulating developmental processes and abiotic stress responses in higher plants. Recent studies show that ABA also exhibits a variety of pharmacological activities. Affordable and sustainable production will be required to utilize the compound in agriculture and as a potential pharmaceutical. Saccharomyces cerevisiae is an established workhorse for the biotechnological production of chemicals. In this study, we constructed and characterised an ABA-producing S. cerevisiae strain using the ABA biosynthetic pathway from Botrytis cinerea. RESULTS Expression of the B. cinerea genes bcaba1, bcaba2, bcaba3 and bcaba4 was sufficient to establish ABA production in the heterologous host. We characterised the ABA-producing strain further by monitoring ABA production over time and, since the pathway contains two cytochrome P450 enzymes, by investigating the effects of overexpressing the native S. cerevisiae or the B. cinerea cytochrome P450 reductase. Both, overexpression of the native or heterologous cytochrome P450 reductase, led to increased ABA titres. We were able to show that ABA production was not affected by precursor or NADPH supply, which suggested that the heterologous enzymes were limiting the flux towards the product. The B. cinerea cytochrome P450 monooxygenases BcABA1 and BcABA2 were identified as pathway bottlenecks and balancing the expression levels of the pathway enzymes resulted in 4.1-fold increased ABA titres while reducing by-product formation. CONCLUSION This work represents the first step towards a heterologous ABA cell factory for the commercially relevant sesquiterpenoid.
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Affiliation(s)
- Maximilian Otto
- Novo Nordisk Foundation Center for Biosustainability, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Paulo Gonçalves Teixeira
- Novo Nordisk Foundation Center for Biosustainability, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Maria Isabel Vizcaino
- Chalmers Mass Spectrometry Infrastructure, Chalmers University of Technology, Gothenburg, Sweden
| | - Florian David
- Novo Nordisk Foundation Center for Biosustainability, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Verena Siewers
- Novo Nordisk Foundation Center for Biosustainability, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.
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Cui F, Wu W, Wang K, Zhang Y, Hu Z, Brosché M, Liu S, Overmyer K. Cell death regulation but not abscisic acid signaling is required for enhanced immunity to Botrytis in Arabidopsis cuticle-permeable mutants. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:5971-5984. [PMID: 31328223 PMCID: PMC6812726 DOI: 10.1093/jxb/erz345] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 07/16/2019] [Indexed: 05/21/2023]
Abstract
Prevailing evidence indicates that abscisic acid (ABA) negatively influences immunity to the fungal pathogen Botrytis cinerea in most but not all cases. ABA is required for cuticle biosynthesis, and cuticle permeability enhances immunity to Botrytis via unknown mechanisms. This complex web of responses obscures the role of ABA in Botrytis immunity. Here, we addressed the relationships between ABA sensitivity, cuticle permeability, and Botrytis immunity in the Arabidopsis thaliana ABA-hypersensitive mutants protein phosphatase2c quadruple mutant (pp2c-q) and enhanced response to aba1 (era1-2). Neither pp2c-q nor era1-2 exhibited phenotypes predicted by the known roles of ABA; conversely, era1-2 had a permeable cuticle and was Botrytis resistant. We employed RNA-seq analysis in cuticle-permeable mutants of differing ABA sensitivities and identified a core set of constitutively activated genes involved in Botrytis immunity and susceptibility to biotrophs, independent of ABA signaling. Furthermore, botrytis susceptible1 (bos1), a mutant with deregulated cell death and enhanced ABA sensitivity, suppressed the Botrytis immunity of cuticle permeable mutants, and this effect was linearly correlated with the extent of spread of wound-induced cell death in bos1. Overall, our data demonstrate that Botrytis immunity conferred by cuticle permeability can be genetically uncoupled from PP2C-regulated ABA sensitivity, but requires negative regulation of a parallel ABA-dependent cell-death pathway.
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Affiliation(s)
- Fuqiang Cui
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Lin’an, Hangzhou, China
- Organismal and Evolutionary Biology Research Program, Faculty of Biological and Environmental Sciences, and Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
- Correspondence: or
| | - Wenwu Wu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Lin’an, Hangzhou, China
| | - Kai Wang
- Organismal and Evolutionary Biology Research Program, Faculty of Biological and Environmental Sciences, and Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Yuan Zhang
- Library of Donghu Campus, Zhejiang A&F University, Lin’an, Hangzhou, China
| | - Zhubing Hu
- State Key Laboratory of Cotton Biology, Department of Biology, Institute of Plant Stress Biology, Henan University, Kaifeng, China
| | - Mikael Brosché
- Organismal and Evolutionary Biology Research Program, Faculty of Biological and Environmental Sciences, and Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
| | - Shenkui Liu
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Lin’an, Hangzhou, China
- Correspondence: or
| | - Kirk Overmyer
- Organismal and Evolutionary Biology Research Program, Faculty of Biological and Environmental Sciences, and Viikki Plant Science Centre, University of Helsinki, Helsinki, Finland
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19
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Mahmoudjanlou Y, Hoff B, Kück U. Construction of a Codon-Adapted Nourseotricin-Resistance Marker Gene for Efficient Targeted Gene Deletion in the Mycophenolic Acid Producer Penicillium brevicompactum. J Fungi (Basel) 2019; 5:E96. [PMID: 31658687 PMCID: PMC6958462 DOI: 10.3390/jof5040096] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 10/01/2019] [Accepted: 10/06/2019] [Indexed: 11/16/2022] Open
Abstract
Penicillium brevicompactum is a filamentous ascomycete used in the pharmaceutical industry to produce mycophenolic acid, an immunosuppressant agent. To extend options for genetic engineering of this fungus, we have tested two resistance markers that have not previously been applied to P. brevicompactum. Although a generally available phleomycin resistance marker (ble) was successfully used in DNA-mediated transformation experiments, we were not able to use a commonly applicable nourseothricin resistance cassette (nat1). To circumvent this failure, we constructed a new nat gene, considering the codon bias for P. brevicompactum. We then used this modified nat gene in subsequent transformation experiments for the targeted disruption of two nuclear genes, MAT1-2-1 and flbA. For MAT1-2-1, we obtained deletion strains with a frequency of about 10%. In the case of flbA, the frequency was about 4%, and this disruption strain also showed reduced conidiospore formation. To confirm the deletion, we used ble to reintroduce the wild-type genes. This step restored the wild-type phenotype in the flbA deletion strain, which had a sporulation defect. The successful transformation system described here substantially extends options for genetically manipulating the biotechnologically relevant fungus P. brevicompactum.
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Affiliation(s)
| | - Birgit Hoff
- Allgemeine & Molekulare Botanik, Ruhr-Universität Bochum, 44780 Bochum, Germany.
| | - Ulrich Kück
- Allgemeine & Molekulare Botanik, Ruhr-Universität Bochum, 44780 Bochum, Germany.
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Abstract
The blast disease, caused by the ascomycete Magnaporthe oryzae, poses a great threat to rice production worldwide. Increasing use of fungicides and/or blast-resistant varieties of rice (Oryza sativa) has proved to be ineffective in long-term control of blast disease under field conditions. To develop effective and durable resistance to blast, it is important to understand the cellular mechanisms underlying pathogenic development in M. oryzae. In this review, we summarize the latest research in phototropism, autophagy, nutrient and redox signaling, and intrinsic phytohormone mimics in M. oryzae for cellular and metabolic adaptation(s) during its interactions with the host plants.
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Affiliation(s)
- Yi Zhen Deng
- Integrative Microbiology Research Centre and State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
| | - Naweed I Naqvi
- Temasek Life Sciences Laboratory and the Department of Biological Sciences, National University of Singapore, Singapore 117604;
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Takino J, Kozaki T, Ozaki T, Liu C, Minami A, Oikawa H. Elucidation of biosynthetic pathway of a plant hormone abscisic acid in phytopathogenic fungi. Biosci Biotechnol Biochem 2019; 83:1642-1649. [DOI: 10.1080/09168451.2019.1618700] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Abstract
ABSTRACT
Abscisic acid (ABA) is one of the plant hormones that regulates physiological functions in various organisms, including plants, sponges, and humans. The biosynthetic machinery in plants is firmly established, while that in fungi is still unclear. Here, we elucidated the functions of the four biosynthetic genes, bcABA1-bcABA4, found in Botrytis cinerea by performing biotransformation experiments and in vitro enzymatic reactions with putative biosynthetic intermediates. The first-committed step is the cyclization of farnesyl diphosphate to give α-ionylideneethane catalyzed by a novel sesquiterpene synthase, BcABA3, which exhibits low amino acid sequence identities with sesquiterpene synthases. Subsequently, two cytochrome P450s, BcABA1 and BcABA2, mediate oxidative modifications of the cyclized product to afford 1ʹ,4ʹ-trans-dihydroxy-α-ionylideneacetic acid, which undergoes alcohol oxidation to furnish ABA. Our results demonstrated that production of ABA does not depend on the nucleotide sequence of bcABA genes. The present study set the stage to investigate the role of ABA in infections.
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Affiliation(s)
- Junya Takino
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Takuto Kozaki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Taro Ozaki
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Chengwei Liu
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Atsushi Minami
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
| | - Hideaki Oikawa
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan
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22
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Darma R, Lutz A, Elliott CE, Idnurm A. Identification of a gene cluster for the synthesis of the plant hormone abscisic acid in the plant pathogen Leptosphaeria maculans. Fungal Genet Biol 2019; 130:62-71. [DOI: 10.1016/j.fgb.2019.04.015] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Revised: 04/10/2019] [Accepted: 04/25/2019] [Indexed: 12/30/2022]
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Killiny N, Nehela Y. Abscisic acid deficiency caused by phytoene desaturase silencing is associated with dwarfing syndrome in citrus. PLANT CELL REPORTS 2019; 38:965-980. [PMID: 31055623 DOI: 10.1007/s00299-019-02418-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Accepted: 04/29/2019] [Indexed: 06/09/2023]
Abstract
In citrus, abscisic acid-deficiency was associated with a dwarfing phenotype, slow growth, small leaves, decreased fresh weight, and faster water loss. ABA supplementation reversed the dwarfing phenotype and enhanced growth. Abscisic acid (ABA) is a ubiquitously distributed phytohormone, which is almost produced by all living kingdoms. In plants, ABA plays pleiotropic physiological roles in growth, development, and stress responses. We explored the hidden relationship between ABA deficiency, and citrus dwarfing. We used targeted-HPLC, targeted-GC-MS, molecular genetics, immunoassays, and gene expression techniques to investigate the effects of the silencing of phytoene desaturase (PDS) gene on the ABA-biosynthetic pathway, endogenous ABA content, and other phytohormones. Silencing of PDS directly suppressed the carotenoids compounds involved in ABA biosynthesis, altered phytohormonal profile, and caused phytoene accumulation and ABA deficiency. The reduction of ABA presumably due to the limited availability of its precursor, zeaxanthin. The ABA-deficient citrus cuttings displayed photobleaching, a dwarf phenotype with impaired growth characteristics that included slow growth, small leaves, decreased fresh weight, and faster water loss. ABA supplementation enhanced the growth and reversed the dwarfing phenotype of the ABA-deficient cuttings. Our data demonstrate that ABA-deficiency may lead to dwarfing phenotype and impaired growth in citrus cuttings. The negative influence of ABA-deficiency on growth rate is the result of altered water relations. Addition of ABA to the CTV-tPDS roots restored shoot growth and reversed the dwarfing phenotype.
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Affiliation(s)
- Nabil Killiny
- Department of Plant Pathology, Citrus Research and Education Center, IFAS, University of Florida, 700 Experiment Station Road, Lake Alfred, FL, 33850, USA.
| | - Yasser Nehela
- Department of Plant Pathology, Citrus Research and Education Center, IFAS, University of Florida, 700 Experiment Station Road, Lake Alfred, FL, 33850, USA
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Kang X, Guo Y, Leng S, Xiao L, Wang L, Xue Y, Liu C. Comparative Transcriptome Profiling of Gaeumannomyces graminis var. tritici in Wheat Roots in the Absence and Presence of Biocontrol Bacillus velezensis CC09. Front Microbiol 2019; 10:1474. [PMID: 31338074 PMCID: PMC6629770 DOI: 10.3389/fmicb.2019.01474] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Accepted: 06/13/2019] [Indexed: 12/27/2022] Open
Abstract
This study aimed to explore potential biocontrol mechanisms involved in the interference of antagonistic bacteria with fungal pathogenicity in planta. To do this, we conducted a comparative transcriptomic analysis of the “take-all” pathogenic fungus Gaeumannomyces graminis var. tritici (Ggt) by examining Ggt-infected wheat roots in the presence or absence of the biocontrol agent Bacillus velezensis CC09 (Bv) compared with Ggt grown on potato dextrose agar (PDA) plates. A total of 4,134 differentially expressed genes (DEGs) were identified in Ggt-infected wheat roots, while 2,011 DEGs were detected in Bv+Ggt-infected roots, relative to the Ggt grown on PDA plates. Moreover, 31 DEGs were identified between wheat roots, respectively infected with Ggt and Bv+Ggt, consisting of 29 downregulated genes coding for potential Ggt pathogenicity factors – e.g., para-nitrobenzyl esterase, cutinase 1 and catalase-3, and two upregulated genes coding for tyrosinase and a hypothetical protein in the Bv+Ggt-infected roots when compared with the Ggt-infected roots. In particular, the expression of one gene, encoding the ABA3 involved in the production of Ggt’s hormone abscisic acid, was 4.11-fold lower in Ggt-infected roots with Bv than without Bv. This is the first experimental study to analyze the activity of Ggt transcriptomes in wheat roots exposed or not to a biocontrol bacterium. Our results therefore suggest the presence of Bv directly and/or indirectly impairs the pathogenicity of Ggt in wheat roots through complex regulatory mechanisms, such as hyphopodia formation, cell wall hydrolase, and expression of a papain inhibitor, among others, all which merit further investigation.
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Affiliation(s)
- Xingxing Kang
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
| | - Yu Guo
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
| | - Shuang Leng
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
| | - Lei Xiao
- School of Chemical Engineering and Technology, China University of Mining and Technology, Xuzhou, China
| | - Lanhua Wang
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
| | - Yarong Xue
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
| | - Changhong Liu
- State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
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25
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Petrasch S, Knapp SJ, van Kan JAL, Blanco‐Ulate B. Grey mould of strawberry, a devastating disease caused by the ubiquitous necrotrophic fungal pathogen Botrytis cinerea. MOLECULAR PLANT PATHOLOGY 2019; 20:877-892. [PMID: 30945788 PMCID: PMC6637890 DOI: 10.1111/mpp.12794] [Citation(s) in RCA: 133] [Impact Index Per Article: 26.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The fungal pathogen Botrytis cinerea causes grey mould, a commercially damaging disease of strawberry. This pathogen affects fruit in the field, storage, transport and market. The presence of grey mould is the most common reason for fruit rejection by growers, shippers and consumers, leading to significant economic losses. Here, we review the biology and epidemiology of the pathogen, mechanisms of infection and the genetics of host plant resistance. The development of grey mould is affected by environmental and genetic factors; however, little is known about how B. cinerea and strawberry interact at the molecular level. Despite intensive efforts, breeding strawberry for resistance to grey mould has not been successful, and the mechanisms underlying tolerance to B. cinerea are poorly understood and under-investigated. Current control strategies against grey mould include pre- and postharvest fungicides, yet they are generally ineffective and expensive. In this review, we examine available research on horticultural management, chemical and biological control of the pathogen in the field and postharvest storage, and discuss their relevance for integrative disease management. Additionally, we identify and propose approaches for increasing resistance to B. cinerea in strawberry by tapping into natural genetic variation and manipulating host factors via genetic engineering and genome editing.
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Affiliation(s)
- Stefan Petrasch
- Department of Plant SciencesUniversity of California, DavisDavisCAUSA
| | - Steven J. Knapp
- Department of Plant SciencesUniversity of California, DavisDavisCAUSA
| | - Jan A. L. van Kan
- Laboratory of PhytopathologyWageningen UniversityWageningenNetherlands
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26
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Han X, Kahmann R. Manipulation of Phytohormone Pathways by Effectors of Filamentous Plant Pathogens. FRONTIERS IN PLANT SCIENCE 2019; 10:822. [PMID: 31297126 PMCID: PMC6606975 DOI: 10.3389/fpls.2019.00822] [Citation(s) in RCA: 86] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Accepted: 06/07/2019] [Indexed: 05/19/2023]
Abstract
Phytohormones regulate a large variety of physiological processes in plants. In addition, salicylic acid (SA), jasmonic acid (JA), and ethylene (ET) are responsible for primary defense responses against abiotic and biotic stresses, while plant growth regulators, such as auxins, brassinosteroids (BRs), cytokinins (CKs), abscisic acid (ABA), and gibberellins (GAs), also contribute to plant immunity. To successfully colonize plants, filamentous pathogens like fungi and oomycetes have evolved diverse strategies to interfere with phytohormone pathways with the help of secreted effectors. These include proteins, toxins, polysaccharides as well as phytohormones or phytohormone mimics. Such pathogen effectors manipulate phytohormone pathways by directly altering hormone levels, by interfering with phytohormone biosynthesis, or by altering or blocking important components of phytohormone signaling pathways. In this review, we outline the various strategies used by filamentous phytopathogens to manipulate phytohormone pathways to cause disease.
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27
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Haile ZM, Nagpala-De Guzman EG, Moretto M, Sonego P, Engelen K, Zoli L, Moser C, Baraldi E. Transcriptome Profiles of Strawberry ( Fragaria vesca) Fruit Interacting With Botrytis cinerea at Different Ripening Stages. FRONTIERS IN PLANT SCIENCE 2019; 10:1131. [PMID: 31620156 PMCID: PMC6759788 DOI: 10.3389/fpls.2019.01131] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Accepted: 08/15/2019] [Indexed: 05/04/2023]
Abstract
Gray mold caused by Botrytis cinerea is a major cause of economic losses in strawberry fruit production, limiting fruit shelf life and commercialization. When the fungus infects Fragaria × ananassa strawberry at flowering or unripe fruit stages, symptoms develop after an extended latent phase on ripe fruits before or after harvesting. To elucidate the growth kinetics of B. cinerea on flower/fruit and the molecular responses associated with low susceptibility of unripe fruit stages, woodland strawberry Fragaria vesca flowers and fruits, at unripe white and ripe red stages, were inoculated with B. cinerea. Quantification of fungal genomic DNA within 72 h postinoculation (hpi) showed limited fungal growth on open flower and white fruit, while on red fruit, the growth was exponential starting from 24 hpi and sporulation was observed within 48 hpi. RNA sequencing applied to white and red fruit at 24 hpi showed that a total of 2,141 genes (12.5% of the total expressed genes) were differentially expressed due to B. cinerea infection. A broad transcriptional reprogramming was observed in both unripe and ripe fruits, involving in particular receptor and signaling, secondary metabolites, and defense response pathways. Membrane-localized receptor-like kinases and nucleotide-binding site leucine-rich repeat genes were predominant in the surveillance system of the fruits, most of them being downregulated in white fruits and upregulated in red fruits. In general, unripe fruits exhibited a stronger defense response than red fruits. Genes encoding for pathogenesis-related proteins and flavonoid polyphenols as well as genes involved in cell-wall strengthening were upregulated, while cell-softening genes appeared to be switched off. As a result, B. cinerea remained quiescent in white fruits, while it was able to colonize ripe red fruits.
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Affiliation(s)
- Zeraye Mehari Haile
- Laboratory of Biotechnology and Plant Pathology, DISTAL, University of Bologna, Bologna, Italy
- Plant Protection Research Division of Melkasa Agricultural Research Center, Ethiopian Institute of Agricultural Research (EIAR), Addis Ababa, Ethiopia
- Genomics and Biology of Fruit Crops Department, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | | | - Marco Moretto
- Unit of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Paolo Sonego
- Unit of Computational Biology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Kristof Engelen
- ESAT-ELECTA, Electrical Energy and Computer Architectures, Leuven, Belgium
| | - Lisa Zoli
- Laboratory of Biotechnology and Plant Pathology, DISTAL, University of Bologna, Bologna, Italy
| | - Claudio Moser
- Genomics and Biology of Fruit Crops Department, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Elena Baraldi
- Laboratory of Biotechnology and Plant Pathology, DISTAL, University of Bologna, Bologna, Italy
- *Correspondence: Elena Baraldi,
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28
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Takino J, Kozaki T, Sato Y, Liu C, Ozaki T, Minami A, Oikawa H. Unveiling Biosynthesis of the Phytohormone Abscisic Acid in Fungi: Unprecedented Mechanism of Core Scaffold Formation Catalyzed by an Unusual Sesquiterpene Synthase. J Am Chem Soc 2018; 140:12392-12395. [PMID: 30226766 DOI: 10.1021/jacs.8b08925] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Abscisic acid (ABA) is a well-known phytohormone that regulates abiotic stresses. ABA produced by fungi is also proposed to be a virulence factor of fungal pathogens. Although its biosynthetic pathway in fungi was proposed by a series of feeding experiments, the enzyme catalyzing the reaction from farnesyl diphosphate to α-ionylideneethane remains to be identified. In this work, we identified the novel type of sesquiterpene synthase BcABA3 and its unprecedented three-step reaction mechanism involving two neutral intermediates, β-farnesene and allofarnesene. Database searches showed that BcABA3 has no homology with typical sesquiterpene synthases and that the homologous enzyme genes are found in more than 100 bacteria, suggesting that these enzymes form a new family of sesquiterpene synthases.
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Affiliation(s)
- Junya Takino
- Department of Chemistry, Faculty of Science , Hokkaido University , Kita-ku Kita 10 Jo Nishi 8 Chome , Sapporo 060-0810 , Japan
| | - Takuto Kozaki
- Department of Chemistry, Faculty of Science , Hokkaido University , Kita-ku Kita 10 Jo Nishi 8 Chome , Sapporo 060-0810 , Japan
| | - Yoshiro Sato
- Department of Chemistry, Faculty of Science , Hokkaido University , Kita-ku Kita 10 Jo Nishi 8 Chome , Sapporo 060-0810 , Japan
| | - Chengwei Liu
- Department of Chemistry, Faculty of Science , Hokkaido University , Kita-ku Kita 10 Jo Nishi 8 Chome , Sapporo 060-0810 , Japan
| | - Taro Ozaki
- Department of Chemistry, Faculty of Science , Hokkaido University , Kita-ku Kita 10 Jo Nishi 8 Chome , Sapporo 060-0810 , Japan
| | - Atsushi Minami
- Department of Chemistry, Faculty of Science , Hokkaido University , Kita-ku Kita 10 Jo Nishi 8 Chome , Sapporo 060-0810 , Japan
| | - Hideaki Oikawa
- Department of Chemistry, Faculty of Science , Hokkaido University , Kita-ku Kita 10 Jo Nishi 8 Chome , Sapporo 060-0810 , Japan
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Cys 2His 2 Zinc Finger Transcription Factor BcabaR1 Positively Regulates Abscisic Acid Production in Botrytis cinerea. Appl Environ Microbiol 2018; 84:AEM.00920-18. [PMID: 29959241 DOI: 10.1128/aem.00920-18] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Accepted: 06/11/2018] [Indexed: 01/03/2023] Open
Abstract
Abscisic acid (ABA) is one of the five classical phytohormones involved in increasing the tolerance of plants for various kinds of stresses caused by abiotic or biotic factors, and it also plays important roles in regulating the activation of innate immune cells and glucose homeostasis in mammals. For these reasons, as a "stress hormone," ABA has recently received attention as a candidate drug for agriculture and biomedical applications, prompting significant development of ABA synthesis. Some plant-pathogenic fungi can synthesize natural ABA. The fungus Botrytis cinerea has been used for biotechnological production of ABA. Identification of the transcription factors (TFs) involved in regulation of ABA biosynthesis in B. cinerea would provide new clues to understand how ABA is synthesized and regulated. In this study, we defined a novel Cys2His2 TF, BcabaR1, that regulates the transcriptional levels of ABA synthase genes (bcaba1, bcaba2, bcaba3, and bcaba4) in an ABA-overproducing mutant, B. cinerea TBC-A. Electrophoretic mobility shift assays revealed that recombinant BcabaR1 can bind specifically to both a 14-nucleotide sequence motif and a 39-nucleotide sequence motif in the promoter region of bcaba1 to -4 genes in vitro A decreased transcriptional level of the bcabaR1 gene in B. cinerea led to significantly decreased ABA production and downregulated transcription of bcaba1 to -4 When bcabaR1 was overexpressed in B. cinerea, ABA production was significantly increased, with upregulated transcription of bcaba1 to -4 Thus, in this study, we found that BcabaR1 acts as a positive regulator of ABA biosynthesis in B. cinereaIMPORTANCE Abscisic acid (ABA) could make a potentially important contribution to theoretical research and applications in agriculture and medicine. Botrytis cinerea is a plant-pathogenic fungus that was found to produce ABA. There has been a view that ABA is related to the interaction between pathogenic fungi and plants. Identification of regulatory genes involved in ABA biosynthesis may facilitate an understanding of the underlying molecular mechanisms of ABA biosynthesis and the pathogenesis of B. cinerea Here, we present a positive regulator, BcabaR1, of ABA biosynthesis in B. cinerea that can affect the transcriptional level of the ABA biosynthesis gene cluster, bcaba1 to -4, by directly binding to the conserved sequence elements in the promoter of the bcaba1 to -4 genes. This TF was found to be specifically involved in regulation of ABA biosynthesis. This work provides new clues for finding other ABA biosynthesis genes and improving ABA yield in B. cinerea.
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Izquierdo-Bueno I, González-Rodríguez VE, Simon A, Dalmais B, Pradier JM, Le Pêcheur P, Mercier A, Walker AS, Garrido C, Collado IG, Viaud M. Biosynthesis of abscisic acid in fungi: identification of a sesquiterpene cyclase as the key enzyme in Botrytis cinerea. Environ Microbiol 2018; 20:2469-2482. [PMID: 29708647 DOI: 10.1111/1462-2920.14258] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Revised: 04/24/2018] [Accepted: 04/25/2018] [Indexed: 12/25/2022]
Abstract
While abscisic acid (ABA) is known as a hormone produced by plants through the carotenoid pathway, a small number of phytopathogenic fungi are also able to produce this sesquiterpene but they use a distinct pathway that starts with the cyclization of farnesyl diphosphate (FPP) into 2Z,4E-α-ionylideneethane which is then subjected to several oxidation steps. To identify the sesquiterpene cyclase (STC) responsible for the biosynthesis of ABA in fungi, we conducted a genomic approach in Botrytis cinerea. The genome of the ABA-overproducing strain ATCC58025 was fully sequenced and five STC-coding genes were identified. Among them, Bcstc5 exhibits an expression profile concomitant with ABA production. Gene inactivation, complementation and chemical analysis demonstrated that BcStc5/BcAba5 is the key enzyme responsible for the key step of ABA biosynthesis in fungi. Unlike what is observed for most of the fungal secondary metabolism genes, the key enzyme-coding gene Bcstc5/Bcaba5 is not clustered with the other biosynthetic genes, i.e., Bcaba1 to Bcaba4 that are responsible for the oxidative transformation of 2Z,4E-α-ionylideneethane. Finally, our study revealed that the presence of the Bcaba genes among Botrytis species is rare and that the majority of them do not possess the ability to produce ABA.
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Affiliation(s)
- Inmaculada Izquierdo-Bueno
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Cádiz, Cádiz, 11510 Puerto Real, Spain
| | - Victoria E González-Rodríguez
- Departamento de Biomedicina, Biotecnología y Salud Pública, Laboratorio de Microbiología, Facultad de Ciencias de Mar y Ambientales, Universidad de Cádiz, Puerto Real, Cádiz 11510, Spain
| | - Adeline Simon
- UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850 Thiverval-Grignon, France
| | - Bérengère Dalmais
- UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850 Thiverval-Grignon, France
| | - Jean-Marc Pradier
- UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850 Thiverval-Grignon, France
| | - Pascal Le Pêcheur
- UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850 Thiverval-Grignon, France
| | - Alex Mercier
- UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850 Thiverval-Grignon, France.,Université Paris-Sud, 91405 Orsay, France
| | - Anne-Sophie Walker
- UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850 Thiverval-Grignon, France
| | - Carlos Garrido
- Departamento de Biomedicina, Biotecnología y Salud Pública, Laboratorio de Microbiología, Facultad de Ciencias de Mar y Ambientales, Universidad de Cádiz, Puerto Real, Cádiz 11510, Spain
| | - Isidro González Collado
- Departamento de Química Orgánica, Facultad de Ciencias, Universidad de Cádiz, Cádiz, 11510 Puerto Real, Spain
| | - Muriel Viaud
- UMR BIOGER, INRA, AgroParisTech, Université Paris-Saclay, 78850 Thiverval-Grignon, France
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31
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Otoguro M, Suzuki S. Status and future of disease protection and grape berry quality alteration by micro-organisms in viticulture. Lett Appl Microbiol 2018; 67:106-112. [PMID: 29908033 DOI: 10.1111/lam.13033] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Revised: 06/12/2018] [Accepted: 06/12/2018] [Indexed: 01/27/2023]
Abstract
Grapevine is one of the most widely grown fruit crops in the world. At present, however, there is much concern regarding chemical pollution in viticulture due to the application of chemical fungicides and fertilizers. One viticultural practice to resolve this issue is the application of micro-organisms to grapevine as a substitute for chemicals. Some micro-organisms act as an enhancer of grape berry quality as well as a suppresser of disease in grapevine through their antagonistic ability and/or systemic resistance inducing ability. Herein, we review current and prospective applications of micro-organisms in viticulture. SIGNIFICANCE AND IMPACT OF THE STUDY In this review, we evaluate the applicability of micro-organisms in viticulture. Micro-organisms can improve grape berry quality through grapevine disease protection and grape berry quality alteration. Because the use of micro-organisms to protect grapevine from plant diseases is safer than the use of chemical fungicides, the use of biofungicides in viticulture is expected to be enhanced by the increasing consumer concern towards chemical fungicides. Micro-organisms also modify plant secondary metabolites for use as flavours, pharmaceuticals and food additives. Studies of micro-organisms that promote polyphenol, anthocyanin and aroma compound biosynthesis are in progress with an eye to improving grape berry quality.
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Affiliation(s)
- M Otoguro
- The Institute of Enology and Viticulture, University of Yamanashi, Kofu, Yamanashi, Japan
| | - S Suzuki
- The Institute of Enology and Viticulture, University of Yamanashi, Kofu, Yamanashi, Japan
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Zhang S, Deng YZ, Zhang LH. Phytohormones: the chemical language in Magnaporthe oryzae-rice pathosystem. Mycology 2018; 9:233-237. [PMID: 30181929 PMCID: PMC6115884 DOI: 10.1080/21501203.2018.1483441] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Accepted: 05/29/2018] [Indexed: 01/19/2023] Open
Abstract
Phytohormones (also named as plant hormones) are chemicals produced by plants in order to modulate various aspects of plant development, stress responses and defence. Recent studies revealed that fungi can also produce phytohormones or phytohormone-mimiking molecules, while it remains poorly understood about the details in the role and regulatory mechanism of such fungal produced phytohormonal molecules in plant-fungus interactions. The rice-blast fungus Magnaporthe oryzae imposes a great threat to global food security. Intensive investigation has been conducted to elucidate M. oryzae pathogenicity and rice (Oryza sativa L.) defense mechanism against blast disease, in order to provide theoretical basis and/or identify potential target(s) for developing novel disease control strategies, as well as for breeding of resistance varieties. Phytohormones have been demonstrated to play conserved and divergent roles in fine-tuning the balance of rice growth and immunity towards M. oryzae. Meanwhile, M. oryzae evolved elaborate strategy to manipulate the rice phytohormones metabolism, or even directly produce and secrete phytohormones, during their invasion process. In this review, we discuss the chemical communication in term of phytohormones in M. oryzae-rice pathosystem.
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Affiliation(s)
- Shulin Zhang
- Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, China
| | - Yi Zhen Deng
- Guangdong Province Key Laboratory of Microbial Signals and Disease Control, South China Agricultural University, Guangzhou, China
| | - Lian-Hui Zhang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
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Xu G, Yang S, Meng L, Wang BG. The plant hormone abscisic acid regulates the growth and metabolism of endophytic fungus Aspergillus nidulans. Sci Rep 2018; 8:6504. [PMID: 29695775 PMCID: PMC5916901 DOI: 10.1038/s41598-018-24770-9] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Accepted: 04/10/2018] [Indexed: 01/14/2023] Open
Abstract
Plant hormones are well known chemical signals that regulate plant growth, development, and adaptation. However, after comparative transcriptome and metabolite analysis, we found that the plant hormone abscisic acid (ABA) also affect the growth and metabolism of endophytic fungus Aspergillus nidulans. There were 3148 up-regulated and 3160 down-regulated genes identified during 100 nM ABA induction. These differentially expressed genes (DEGs) were mainly involved in: RNA polymerase and basal transcription factors; ribosome biogenesis, protein processing, proteasome, and ubiquitin mediated proteolysis; nucleotide metabolism and tri-carboxylic acid (TCA) cycle; cell cycle and biosynthesis of secondary metabolites. Production of mycotoxins, which have insect-resistance or anti-pathogen activity, was also changed with ABA induction. This study provides the first global view of ABA induced transcription and metabolite changes in endophytic fungus, which might suggest a potential fungus-plant cross-talk via ABA.
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Affiliation(s)
- Gangming Xu
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao, 266071, People's Republic of China. .,Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao, 266071, People's Republic of China.
| | - Suiqun Yang
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao, 266071, People's Republic of China.,University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing, 100049, P. R. China
| | - Linghong Meng
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao, 266071, People's Republic of China.,Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao, 266071, People's Republic of China
| | - Bin-Gui Wang
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Nanhai Road 7, Qingdao, 266071, People's Republic of China. .,Laboratory of Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Nanhai Road 7, Qingdao, 266071, People's Republic of China.
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Olds CL, Glennon EKK, Luckhart S. Abscisic acid: new perspectives on an ancient universal stress signaling molecule. Microbes Infect 2018; 20:484-492. [PMID: 29408537 DOI: 10.1016/j.micinf.2018.01.009] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2017] [Revised: 01/17/2018] [Accepted: 01/18/2018] [Indexed: 01/06/2023]
Abstract
Few biological molecules have as far reaching and dynamic effects as abscisic acid (ABA). In this review, we draw together the often segregated fields of plant, animal, and human biology to highlight ABA biosynthesis, signaling and physiological effects with examples of host-pathogen interactions to emphasize the cross-kingdom biology of this ancient signaling molecule.
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Affiliation(s)
- Cassandra L Olds
- Department of Entomology, Plant Pathology and Nematology, University of Idaho, 875 Perimeter Drive MS 2329, Moscow, ID, 83844-2329, USA; Center for Health in the Human Ecosystem, University of Idaho, 875 Perimeter Drive MS 1122, Moscow, ID, 83844-1122, USA.
| | - Elizabeth K K Glennon
- Center for Infectious Disease Research, 307 Westlake Ave N, Suite 500, Seattle, WA, 98109, USA
| | - Shirley Luckhart
- Department of Entomology, Plant Pathology and Nematology, University of Idaho, 875 Perimeter Drive MS 2329, Moscow, ID, 83844-2329, USA; Center for Health in the Human Ecosystem, University of Idaho, 875 Perimeter Drive MS 1122, Moscow, ID, 83844-1122, USA; Department of Biological Sciences, University of Idaho 875 Perimeter Drive, MS 3051, Moscow, ID, 83844-3051, USA
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35
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Overmyer K, Vuorinen K, Brosché M. Interaction points in plant stress signaling pathways. PHYSIOLOGIA PLANTARUM 2018; 162:191-204. [PMID: 28857168 DOI: 10.1111/ppl.12639] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2017] [Revised: 08/23/2017] [Accepted: 08/24/2017] [Indexed: 05/29/2023]
Abstract
Plants live in a world where they are challenged by abiotic and biotic stresses. In response to unfavorable conditions or an acute challenge like a pathogen attack, plants use various signaling pathways that regulate expression of defense genes and other mechanisms to provide resistance or stress adaptation. Identification of the regulatory steps in defense signaling has seen much progress in recent years. Many of the identified signaling pathways show interactions with each other, exemplified by the modulation of the jasmonic acid response by salicylic acid. Accordingly, defense regulation is more appropriately thought of as a web of interactions, rather than linear pathways. Here we describe various regulatory components and how they interact to provide an appropriate defense response. One of the common assays to monitor the output of defense signaling, as well as interaction between signaling pathways, is the measurement of altered gene expression. We illustrate that, while this is a suitable assay to monitor defense regulation, it can also inadvertently provide overstated conclusions about interaction among signaling pathways.
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Affiliation(s)
- Kirk Overmyer
- Division of Plant Biology, Department of Biosciences, Viikki Plant Science Centre, University of Helsinki, P.O. Box 65 (Viikinkaari 1), FI-00014, Helsinki, Finland
| | - Katariina Vuorinen
- Division of Plant Biology, Department of Biosciences, Viikki Plant Science Centre, University of Helsinki, P.O. Box 65 (Viikinkaari 1), FI-00014, Helsinki, Finland
| | - Mikael Brosché
- Division of Plant Biology, Department of Biosciences, Viikki Plant Science Centre, University of Helsinki, P.O. Box 65 (Viikinkaari 1), FI-00014, Helsinki, Finland
- Institute of Technology, University of Tartu, Nooruse 1, 50411, Tartu, Estonia
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Abstract
Metabolic gene clusters (MGCs) have provided some of the earliest glimpses at the biochemical machinery of yeast and filamentous fungi. MGCs encode diverse genetic mechanisms for nutrient acquisition and the synthesis/degradation of essential and adaptive metabolites. Beyond encoding the enzymes performing these discrete anabolic or catabolic processes, MGCs may encode a range of mechanisms that enable their persistence as genetic consortia; these include enzymatic mechanisms to protect their host fungi from their inherent toxicities, and integrated regulatory machinery. This modular, self-contained nature of MGCs contributes to the metabolic and ecological adaptability of fungi. The phylogenetic and ecological patterns of MGC distribution reflect the broad diversity of fungal life cycles and nutritional modes. While the origins of most gene clusters are enigmatic, MGCs are thought to be born into a genome through gene duplication, relocation, or horizontal transfer, and analyzing the death and decay of gene clusters provides clues about the mechanisms selecting for their assembly. Gene clustering may provide inherent fitness advantages through metabolic efficiency and specialization, but experimental evidence for this is currently limited. The identification and characterization of gene clusters will continue to be powerful tools for elucidating fungal metabolism as well as understanding the physiology and ecology of fungi.
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Affiliation(s)
- Jason C Slot
- The Ohio State University, Columbus, OH, United States.
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Park YG, Mun BG, Kang SM, Hussain A, Shahzad R, Seo CW, Kim AY, Lee SU, Oh KY, Lee DY, Lee IJ, Yun BW. Bacillus aryabhattai SRB02 tolerates oxidative and nitrosative stress and promotes the growth of soybean by modulating the production of phytohormones. PLoS One 2017; 12:e0173203. [PMID: 28282395 PMCID: PMC5345817 DOI: 10.1371/journal.pone.0173203] [Citation(s) in RCA: 103] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2016] [Accepted: 02/16/2017] [Indexed: 12/22/2022] Open
Abstract
Plant growth promoting rhizobacteria (PGPR) are diverse, naturally occurring bacteria that establish a close association with plant roots and promote the growth and immunity of plants. Established mechanisms involved in PGPR-mediated plant growth promotion include regulation of phytohormones, improved nutrient availability, and antagonistic effects on plant pathogens. In this study, we isolated a bacterium from the rhizospheric soil of a soybean field in Chungcheong buk-do, South Korea. Using 16S rRNA sequencing, the bacterium was identified as Bacillus aryabhattai strain SRB02. Here we show that this strain significantly promotes the growth of soybean. Gas chromatography-mass spectrometry analysis showed that SRB02 produced significant amounts of abscisic acid, indole acetic acid, cytokinin and different gibberellic acids in culture. SRB02-treated soybean plants showed significantly better heat stress tolerance than did untreated plants. These plants also produced consistent levels of ABA under heat stress and exhibited ABA-mediated stomatal closure. High levels of IAA, JA, GA12, GA4, and GA7, were recorded in SRB02-treated plants. These plants produced longer roots and shoots than those of control plants. B. aryabhattai SRB02 was found to be highly tolerant to oxidative stress induced by H2O2 and MV potentiated by high catalase (CAT) and superoxide dismutase (SOD) activities. SRB02 also tolerated high nitrosative stress induced by the nitric oxide donors GSNO and CysNO. Because of these attributes, B. aryabhattai SRB02 may prove to be a valuable resource for incorporation in biofertilizers and other soil amendments that seek to improve crop productivity.
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Affiliation(s)
- Yeon-Gyeong Park
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Bong-Gyu Mun
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Sang-Mo Kang
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Adil Hussain
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
- Department of Agriculture, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Raheem Shahzad
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Chang-Woo Seo
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Ah-Yeong Kim
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Sang-Uk Lee
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Kyeong Yeol Oh
- Gyeongnam Oriental Medicinal Herb Institute, Sancheong, Republic of Korea
| | - Dong Yeol Lee
- Gyeongnam Oriental Medicinal Herb Institute, Sancheong, Republic of Korea
| | - In-Jung Lee
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
| | - Byung-Wook Yun
- School of Applied Biosciences, Kyungpook National University, Daegu, Republic of Korea
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Lecompte F, Nicot PC, Ripoll J, Abro MA, Raimbault AK, Lopez-Lauri F, Bertin N. Reduced susceptibility of tomato stem to the necrotrophic fungus Botrytis cinerea is associated with a specific adjustment of fructose content in the host sugar pool. ANNALS OF BOTANY 2017; 119:931-943. [PMID: 28065923 PMCID: PMC5378192 DOI: 10.1093/aob/mcw240] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2016] [Revised: 07/12/2016] [Accepted: 10/10/2016] [Indexed: 05/18/2023]
Abstract
Background and aims Plant soluble sugars, as main components of primary metabolism, are thought to be implicated in defence against pathogenic fungi. However, the function of sucrose and hexoses remains unclear. This study aimed to identify robust patterns in the dynamics of soluble sugars in sink tissues of tomato plants during the course of infection by the necrotrophic fungus Botrytis cinerea . Distinct roles for glucose and fructose in defence against B. cinerea were hypothesized. Methods We examined sugar contents and defence hormonal markers in tomato stem tissues before and after infection by B. cinerea , in a range of abiotic environments created by various nitrogen and water supplies. Key Results Limited nitrogen or water supplies increased tomato stem susceptibility to B. cinerea . Glucose and fructose contents of tissues surrounding infection sites evolved differently after inoculation. The fructose content never decreased after inoculation with B. cinerea , while that of glucose showed either positive or negative variation, depending on the abiotic environment. An increase in the relative fructose content (defined as the proportion of fructose in the soluble sugar pool) was observed in the absence of glucose accumulation and was associated with lower susceptibility. A lower expression of the salicylic acid marker PR1a , and a lower repression of a jasmonate marker COI1 were associated with reduced susceptibility. Accordingly, COI1 expression was positively correlated with the relative fructose contents 7 d after infection. Conclusions Small variations of fructose content among the sugar pool are unlikely to affect intrinsic pathogen growth. Our results highlight distinct use of host glucose and fructose after infection by B. cinerea and suggest strongly that adjustment of the relative fructose content is required for enhanced plant defence.
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Affiliation(s)
| | | | | | | | - Astrid K. Raimbault
- UMR Qualisud, Université d’Avignon et des Pays du Vaucluse, F-84916 Avignon, France
| | - Félicie Lopez-Lauri
- UMR Qualisud, Université d’Avignon et des Pays du Vaucluse, F-84916 Avignon, France
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Using Network Extracted Ontologies to Identify Novel Genes with Roles in Appressorium Development in the Rice Blast Fungus Magnaporthe oryzae. Microorganisms 2017; 5:microorganisms5010003. [PMID: 28106722 PMCID: PMC5374380 DOI: 10.3390/microorganisms5010003] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2016] [Revised: 01/04/2017] [Accepted: 01/07/2017] [Indexed: 11/17/2022] Open
Abstract
Magnaporthe oryzae is the causal agent of rice blast disease, the most important infection of rice worldwide. Half the world's population depends on rice for its primary caloric intake and, as such, rice blast poses a serious threat to food security. The stages of M. oryzae infection are well defined, with the formation of an appressorium, a cell type that allows penetration of the plant cuticle, particularly well studied. However, many of the key pathways and genes involved in this disease stage are yet to be identified. In this study, I have used network-extracted ontologies (NeXOs), hierarchical structures inferred from RNA-Seq data, to identify pathways involved in appressorium development, which in turn highlights novel genes with potential roles in this process. This study illustrates the use of NeXOs for pathway identification from large-scale genomics data and also identifies novel genes with potential roles in disease. The methods presented here will be useful to study disease processes in other pathogenic species and these data represent predictions of novel targets for intervention in M. oryzae.
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40
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Lievens L, Pollier J, Goossens A, Beyaert R, Staal J. Abscisic Acid as Pathogen Effector and Immune Regulator. FRONTIERS IN PLANT SCIENCE 2017; 8:587. [PMID: 28469630 PMCID: PMC5395610 DOI: 10.3389/fpls.2017.00587] [Citation(s) in RCA: 103] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2017] [Accepted: 03/31/2017] [Indexed: 05/18/2023]
Abstract
Abscisic acid (ABA) is a sesquiterpene signaling molecule produced in all kingdoms of life. To date, the best known functions of ABA are derived from its role as a major phytohormone in plant abiotic stress resistance. Different organisms have developed different biosynthesis and signal transduction pathways related to ABA. Despite this, there are also intriguing common themes where ABA often suppresses host immune responses and is utilized by pathogens as an effector molecule. ABA also seems to play an important role in compatible mutualistic interactions such as mycorrhiza and rhizosphere bacteria with plants, and possibly also the animal gut microbiome. The frequent use of ABA in inter-species communication could be a possible reason for the wide distribution and re-invention of ABA as a signaling molecule in different organisms. In humans and animal models, it has been shown that ABA treatment or nutrient-derived ABA is beneficial in inflammatory diseases like colitis and type 2 diabetes, which confer potential to ABA as an interesting nutraceutical or pharmacognostic drug. The anti-inflammatory activity, cellular metabolic reprogramming, and other beneficial physiological and psychological effects of ABA treatment in humans and animal models has sparked an interest in this molecule and its signaling pathway as a novel pharmacological target. In contrast to plants, however, very little is known about the ABA biosynthesis and signaling in other organisms. Genes, tools and knowledge about ABA from plant sciences and studies of phytopathogenic fungi might benefit biomedical studies on the physiological role of endogenously generated ABA in humans.
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Affiliation(s)
- Laurens Lievens
- Unit of Molecular Signal Transduction in Inflammation, VIB-UGent Center for Inflammation Research, VIBGhent, Belgium
- Department of Biomedical Molecular Biology, Ghent UniversityGhent, Belgium
| | - Jacob Pollier
- VIB-UGent Center for Plant Systems Biology, VIBGhent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent UniversityGhent, Belgium
| | - Alain Goossens
- VIB-UGent Center for Plant Systems Biology, VIBGhent, Belgium
- Department of Plant Biotechnology and Bioinformatics, Ghent UniversityGhent, Belgium
| | - Rudi Beyaert
- Unit of Molecular Signal Transduction in Inflammation, VIB-UGent Center for Inflammation Research, VIBGhent, Belgium
- Department of Biomedical Molecular Biology, Ghent UniversityGhent, Belgium
| | - Jens Staal
- Unit of Molecular Signal Transduction in Inflammation, VIB-UGent Center for Inflammation Research, VIBGhent, Belgium
- Department of Biomedical Molecular Biology, Ghent UniversityGhent, Belgium
- *Correspondence: Jens Staal
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Survila M, Davidsson PR, Pennanen V, Kariola T, Broberg M, Sipari N, Heino P, Palva ET. Peroxidase-Generated Apoplastic ROS Impair Cuticle Integrity and Contribute to DAMP-Elicited Defenses. FRONTIERS IN PLANT SCIENCE 2016; 7:1945. [PMID: 28066496 PMCID: PMC5179520 DOI: 10.3389/fpls.2016.01945] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Accepted: 12/07/2016] [Indexed: 05/20/2023]
Abstract
Cuticular defects trigger a battery of reactions including enhanced reactive oxygen species (ROS) production and resistance to necrotrophic pathogens. However, the source of ROS generated by such impaired cuticles has remained elusive. Here, we report the characterization of Arabidopsis thaliana ohy1 mutant, a Peroxidase 57 (PER57) - overexpressing line that demonstrates enhanced defense responses that result both from increased accumulation of ROS and permeability of the leaf cuticle. The ohy1 mutant was identified in a screen of A. thaliana seedlings for oligogalacturonides (OGs) insensitive/hypersensitive mutants that exhibit altered growth retardation in response to exogenous OGs. Mutants impaired in OG sensitivity were analyzed for disease resistance/susceptibility to the necrotrophic phytopathogens Botrytis cinerea and Pectobacterium carotovorum. In the ohy1 line, the hypersensitivity to OGs was associated with resistance to the tested pathogens. This PER57 overexpressing line exhibited a significantly more permeable leaf cuticle than wild-type plants and this phenotype could be recapitulated by overexpressing other class III peroxidases. Such peroxidase overexpression was accompanied by the suppressed expression of cutin biosynthesis genes and the enhanced expression of genes associated with OG-signaling. Application of ABA completely removed ROS, restored the expression of genes associated with cuticle biosynthesis and led to decreased permeability of the leaf cuticle, and finally, abolished immunity to B. cinerea. Our work demonstrates that increased peroxidase activity increases permeability of the leaf cuticle. The loss of cuticle integrity primes plant defenses to necrotrophic pathogens via the activation of DAMP-responses.
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Affiliation(s)
| | | | | | | | | | | | | | - Erkki T. Palva
- Division of Genetics, Viikki Plant Science Centre, Department of Biosciences, Faculty of Biological and Environmental Sciences, University of HelsinkiHelsinki, Finland
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42
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Comparative transcriptome analysis between an evolved abscisic acid-overproducing mutant Botrytis cinerea TBC-A and its ancestral strain Botrytis cinerea TBC-6. Sci Rep 2016; 6:37487. [PMID: 27892476 PMCID: PMC5124961 DOI: 10.1038/srep37487] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Accepted: 10/31/2016] [Indexed: 12/21/2022] Open
Abstract
Abscisic acid (ABA) is a classical phytohormone which plays an important role in plant stress resistance. Moreover, ABA is also found to regulate the activation of innate immune cells and glucose homeostasis in mammals. Therefore, this ‘stress hormone’ is of great importance to theoretical research and agricultural and medical applications. Botrytis cinerea is a well-known phytopathogenic ascomycete that synthesizes ABA via a pathway substantially different from higher plants. Identification of the functional genes involved in ABA biosynthesis in B. cinerea would be of special interest. We developed an ABA-overproducing mutant strain, B. cinerea TBC-A, previously and obtained a 41.5-Mb genome sequence of B. cinerea TBC-A. In this study, the transcriptomes of B. cinerea TBC-A and its ancestral strain TBC-6 were sequenced under identical fermentation conditions. A stringent comparative transcriptome analysis was performed to identify differentially expressed genes participating in the metabolic pathways related to ABA biosynthesis in B. cinerea. This study provides the first global view of the transcriptional changes underlying the very different ABA productivity of the B. cinerea strains and will expand our knowledge of the molecular basis for ABA biosynthesis in B. cinerea.
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Abstract
Most classical plant hormones are also produced by pathogenic and symbiotic fungi. The way in which these molecules favour the invasion of plant tissues and the development of fungi inside plant tissues is still largely unknown. In this review, we examine the different roles of such hormone production by pathogenic fungi. Converging evidence suggests that these fungal-derived molecules have potentially two modes of action: (i) they may perturb plant processes, either positively or negatively, to favour invasion and nutrient uptake; and (ii) they may also act as signals for the fungi themselves to engage appropriate developmental and physiological processes adapted to their environment. Indirect evidence suggests that abscisic acid, gibberellic acid and ethylene produced by fungi participate in pathogenicity. There is now evidence that auxin and cytokinins could be positive regulators required for virulence. Further research should establish whether or not fungal-derived hormones act like other fungal effectors.
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Affiliation(s)
- Emilie Chanclud
- Université Montpellier, UMR BGPI INRA/CIRAD/SupAgro, 34398, Montpellier, France
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44
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Allu AD, Brotman Y, Xue GP, Balazadeh S. Transcription factor ANAC032 modulates JA/SA signalling in response to Pseudomonas syringae infection. EMBO Rep 2016; 17:1578-1589. [PMID: 27632992 DOI: 10.15252/embr.201642197] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2016] [Accepted: 08/23/2016] [Indexed: 11/09/2022] Open
Abstract
Responses to pathogens, including host transcriptional reprogramming, require partially antagonistic signalling pathways dependent on the phytohormones salicylic (SA) and jasmonic (JA) acids. However, upstream factors modulating the interplay of these pathways are not well characterized. Here, we identify the transcription factor ANAC032 from Arabidopsis thaliana as one such regulator in response to the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (Pst). ANAC032 directly represses MYC2 activation upon Pst attack, resulting in blockage of coronatine-mediated stomatal reopening which restricts entry of bacteria into plant tissue. Furthermore, ANAC032 activates SA signalling by repressing NIMIN1, a key negative regulator of SA-dependent defence. Finally, ANAC032 reduces expression of JA-responsive genes, including PDF1.2A Thus, ANAC032 enhances resistance to Pst by generating an orchestrated transcriptional output towards key SA- and JA-signalling genes coordinated through direct binding of ANAC032 to the MYC2, NIMIN1 and PDF1.2A promoters.
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Affiliation(s)
- Annapurna Devi Allu
- Institute of Biochemistry and Biology, University of Potsdam, Potsdam-Golm, Germany.,Max-Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Yariv Brotman
- Max-Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Gang-Ping Xue
- CSIRO Agriculture Flagship, St. Lucia, QLD, Australia
| | - Salma Balazadeh
- Institute of Biochemistry and Biology, University of Potsdam, Potsdam-Golm, Germany .,Max-Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
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45
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Buhrow LM, Cram D, Tulpan D, Foroud NA, Loewen MC. Exogenous Abscisic Acid and Gibberellic Acid Elicit Opposing Effects on Fusarium graminearum Infection in Wheat. PHYTOPATHOLOGY 2016; 106:986-96. [PMID: 27135677 DOI: 10.1094/phyto-01-16-0033-r] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Although the roles of salicylate (SA) and jasmonic acid (JA) have been well-characterized in Fusarium head blight (FHB)-infected cereals, the roles of other phytohormones remain more ambiguous. Here, the association between an array of phytohormones and FHB pathogenesis in wheat is investigated. Comprehensive profiling of endogenous hormones demonstrated altered cytokinin, gibberellic acid (GA), and JA metabolism in a FHB-resistant cultivar, whereas challenge by Fusarium graminearum increased abscisic acid (ABA), JA, and SA in both FHB-susceptible and -resistant cultivars. Subsequent investigation of ABA or GA coapplication with fungal challenge increased and decreased FHB spread, respectively. These phytohormones-induced effects may be attributed to alteration of the F. graminearum transcriptome because ABA promoted expression of early-infection genes, including hydrolases and cytoskeletal reorganization genes, while GA suppressed nitrogen metabolic gene expression. Neither ABA nor GA elicited significant effects on F. graminearum fungal growth or sporulation in axenic conditions, nor do these phytohormones affect trichothecene gene expression, deoxynivalenol mycotoxin accumulation, or SA/JA biosynthesis in F. graminearum-challenged wheat spikes. Finally, the combined application of GA and paclobutrazol, a Fusarium fungicide, provided additive effects on reducing FHB severity, highlighting the potential for combining fungicidal agents with select phytohormone-related treatments for management of FHB infection in wheat.
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Affiliation(s)
- Leann M Buhrow
- First, second, and fifth authors: National Research Council of Canada, Aquatic and Crop Resources Development, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9 Canada; third author: National Research Council of Canada, Information and Communication Technologies, 100 des Aboiteaux Street, Moncton, NB, E1A 7R1 Canada; fourth author: Agriculture and Agri-Food Canada, 5403 1st Ave S., Lethbridge, AB, T1J 4B1 Canada; and fifth author: Department of Biochemistry, University of Saskatchewan, 107 Wiggins Rd. Saskatoon, SK, S7N 5E5 Canada
| | - Dustin Cram
- First, second, and fifth authors: National Research Council of Canada, Aquatic and Crop Resources Development, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9 Canada; third author: National Research Council of Canada, Information and Communication Technologies, 100 des Aboiteaux Street, Moncton, NB, E1A 7R1 Canada; fourth author: Agriculture and Agri-Food Canada, 5403 1st Ave S., Lethbridge, AB, T1J 4B1 Canada; and fifth author: Department of Biochemistry, University of Saskatchewan, 107 Wiggins Rd. Saskatoon, SK, S7N 5E5 Canada
| | - Dan Tulpan
- First, second, and fifth authors: National Research Council of Canada, Aquatic and Crop Resources Development, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9 Canada; third author: National Research Council of Canada, Information and Communication Technologies, 100 des Aboiteaux Street, Moncton, NB, E1A 7R1 Canada; fourth author: Agriculture and Agri-Food Canada, 5403 1st Ave S., Lethbridge, AB, T1J 4B1 Canada; and fifth author: Department of Biochemistry, University of Saskatchewan, 107 Wiggins Rd. Saskatoon, SK, S7N 5E5 Canada
| | - Nora A Foroud
- First, second, and fifth authors: National Research Council of Canada, Aquatic and Crop Resources Development, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9 Canada; third author: National Research Council of Canada, Information and Communication Technologies, 100 des Aboiteaux Street, Moncton, NB, E1A 7R1 Canada; fourth author: Agriculture and Agri-Food Canada, 5403 1st Ave S., Lethbridge, AB, T1J 4B1 Canada; and fifth author: Department of Biochemistry, University of Saskatchewan, 107 Wiggins Rd. Saskatoon, SK, S7N 5E5 Canada
| | - Michele C Loewen
- First, second, and fifth authors: National Research Council of Canada, Aquatic and Crop Resources Development, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9 Canada; third author: National Research Council of Canada, Information and Communication Technologies, 100 des Aboiteaux Street, Moncton, NB, E1A 7R1 Canada; fourth author: Agriculture and Agri-Food Canada, 5403 1st Ave S., Lethbridge, AB, T1J 4B1 Canada; and fifth author: Department of Biochemistry, University of Saskatchewan, 107 Wiggins Rd. Saskatoon, SK, S7N 5E5 Canada
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Tang XL, Dai P, Gao H, Wang CX, Chen GD, Hong K, Hu D, Yao XS. A Single Gene Cluster for Chalcomycins and Aldgamycins: Genetic Basis for Bifurcation of Their Biosynthesis. Chembiochem 2016; 17:1241-9. [PMID: 27191535 DOI: 10.1002/cbic.201600118] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2016] [Indexed: 01/27/2023]
Abstract
Aldgamycins are 16-membered macrolide antibiotics with a rare branched-chain sugar d-aldgarose or decarboxylated d-aldgarose at C-5. In our efforts to clone the gene cluster for aldgamycins from a marine-derived Streptomyces sp. HK-2006-1 capable of producing both aldgamycins and chalcomycins, we found that both are biosynthesized from a single gene cluster. Whole-genome sequencing combined with gene disruption established the entire gene cluster of aldgamycins: nine new genes are incorporated with the previously identified chalcomycin gene cluster. Functional analysis of these genes revealed that almDI/almDII, (encoding α/β subunits of pyruvate dehydrogenase) triggers the biosynthesis of aldgamycins, whereas almCI (encoding an oxidoreductase) initiates chalcomycins biosynthesis. This is the first report that aldgamycins and chalcomycins are derived from a single gene cluster and of the genetic basis for bifurcation in their biosynthesis.
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Affiliation(s)
- Xiao-Long Tang
- College of Traditional Chinese Materia Medica, Shenyang Pharmaceutical University, No. 103 Wenhua Road, Shenyang, 110016, China
| | - Ping Dai
- Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, Jinan University, No. 601 Huangpu Avenue, Guangzhou, 510632, China
| | - Hao Gao
- Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, Jinan University, No. 601 Huangpu Avenue, Guangzhou, 510632, China
| | - Chuan-Xi Wang
- Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, Jinan University, No. 601 Huangpu Avenue, Guangzhou, 510632, China
| | - Guo-Dong Chen
- Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, Jinan University, No. 601 Huangpu Avenue, Guangzhou, 510632, China
| | - Kui Hong
- Key Laboratory of Combinatorial Biosynthesis and Drug Discovery, Ministry of Education, School of Pharmaceutical Sciences, Wuhan University, No. 185 Donghu Road, Wuhan, 430071, China
| | - Dan Hu
- Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, Jinan University, No. 601 Huangpu Avenue, Guangzhou, 510632, China.
| | - Xin-Sheng Yao
- College of Traditional Chinese Materia Medica, Shenyang Pharmaceutical University, No. 103 Wenhua Road, Shenyang, 110016, China. .,Institute of Traditional Chinese Medicine and Natural Products, College of Pharmacy, Jinan University, No. 601 Huangpu Avenue, Guangzhou, 510632, China.
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Blanco-Ulate B, Amrine KCH, Collins TS, Rivero RM, Vicente AR, Morales-Cruz A, Doyle CL, Ye Z, Allen G, Heymann H, Ebeler SE, Cantu D. Developmental and Metabolic Plasticity of White-Skinned Grape Berries in Response to Botrytis cinerea during Noble Rot. PLANT PHYSIOLOGY 2015; 169:2422-43. [PMID: 26450706 PMCID: PMC4677888 DOI: 10.1104/pp.15.00852] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Accepted: 10/06/2015] [Indexed: 05/24/2023]
Abstract
Noble rot results from exceptional infections of ripe grape (Vitis vinifera) berries by Botrytis cinerea. Unlike bunch rot, noble rot promotes favorable changes in grape berries and the accumulation of secondary metabolites that enhance wine grape composition. Noble rot-infected berries of cv Sémillon, a white-skinned variety, were collected over 3 years from a commercial vineyard at the same time that fruit were harvested for botrytized wine production. Using an integrated transcriptomics and metabolomics approach, we demonstrate that noble rot alters the metabolism of cv Sémillon berries by inducing biotic and abiotic stress responses as well as ripening processes. During noble rot, B. cinerea induced the expression of key regulators of ripening-associated pathways, some of which are distinctive to the normal ripening of red-skinned cultivars. Enhancement of phenylpropanoid metabolism, characterized by a restricted flux in white-skinned berries, was a common outcome of noble rot and red-skinned berry ripening. Transcript and metabolite analyses together with enzymatic assays determined that the biosynthesis of anthocyanins is a consistent hallmark of noble rot in cv Sémillon berries. The biosynthesis of terpenes and fatty acid aroma precursors also increased during noble rot. We finally characterized the impact of noble rot in botrytized wines. Altogether, the results of this work demonstrated that noble rot causes a major reprogramming of berry development and metabolism. This desirable interaction between a fruit and a fungus stimulates pathways otherwise inactive in white-skinned berries, leading to a greater accumulation of compounds involved in the unique flavor and aroma of botrytized wines.
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Affiliation(s)
- Barbara Blanco-Ulate
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Katherine C H Amrine
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Thomas S Collins
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Rosa M Rivero
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Ariel R Vicente
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Abraham Morales-Cruz
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Carolyn L Doyle
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Zirou Ye
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Greg Allen
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Hildegarde Heymann
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Susan E Ebeler
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
| | - Dario Cantu
- Department of Viticulture and Enology, University of California, Davis, California 95616 (B.B.-U., K.C.H.A., T.S.C., A.M.-C., C.L.D., Z.Y., H.H., S.E.E., D.C.);Viticulture and Enology Program, Washington State University, Tri-Cities, Richland, Washington 99354 (T.S.C.);Centro de Edafología y Biología Aplicada del Segura-Consejo Superior de Investigaciones Científicas, 30100 Murcia, Spain (R.M.R.);Consejo Nacional de Investigaciones Científicas y Técnicas, 1900 La Plata, Argentina (A.R.V.);Facultad de Ciencias Agrarias y Forestales, Universidad Nacional de La Plata, 1900 La Plata, Argentina (A.R.V.); andDolce Winery, Oakville, California 94562 (G.A.)
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Kelloniemi J, Trouvelot S, Héloir MC, Simon A, Dalmais B, Frettinger P, Cimerman A, Fermaud M, Roudet J, Baulande S, Bruel C, Choquer M, Couvelard L, Duthieuw M, Ferrarini A, Flors V, Le Pêcheur P, Loisel E, Morgant G, Poussereau N, Pradier JM, Rascle C, Trdá L, Poinssot B, Viaud M. Analysis of the Molecular Dialogue Between Gray Mold (Botrytis cinerea) and Grapevine (Vitis vinifera) Reveals a Clear Shift in Defense Mechanisms During Berry Ripening. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2015; 28:1167-80. [PMID: 26267356 DOI: 10.1094/mpmi-02-15-0039-r] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Mature grapevine berries at the harvesting stage (MB) are very susceptible to the gray mold fungus Botrytis cinerea, while veraison berries (VB) are not. We conducted simultaneous microscopic and transcriptomic analyses of the pathogen and the host to investigate the infection process developed by B. cinerea on MB versus VB, and the plant defense mechanisms deployed to stop the fungus spreading. On the pathogen side, our genome-wide transcriptomic data revealed that B. cinerea genes upregulated during infection of MB are enriched in functional categories related to necrotrophy, such as degradation of the plant cell wall, proteolysis, membrane transport, reactive oxygen species (ROS) generation, and detoxification. Quantitative-polymerase chain reaction on a set of representative genes related to virulence and microscopic observations further demonstrated that the infection is also initiated on VB but is stopped at the penetration stage. On the plant side, genome-wide transcriptomic analysis and metabolic data revealed a defense pathway switch during berry ripening. In response to B. cinerea inoculation, VB activated a burst of ROS, the salicylate-dependent defense pathway, the synthesis of the resveratrol phytoalexin, and cell-wall strengthening. On the contrary, in infected MB, the jasmonate-dependent pathway was activated, which did not stop the fungal necrotrophic process.
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Affiliation(s)
- Jani Kelloniemi
- 1 Université de Bourgogne, UMR 1347 Agroécologie, Pôle Interactions Plantes Micro-organismes-ERL CNRS 6300, 17 rue Sully, 21000 Dijon, France
| | - Sophie Trouvelot
- 1 Université de Bourgogne, UMR 1347 Agroécologie, Pôle Interactions Plantes Micro-organismes-ERL CNRS 6300, 17 rue Sully, 21000 Dijon, France
| | - Marie-Claire Héloir
- 1 Université de Bourgogne, UMR 1347 Agroécologie, Pôle Interactions Plantes Micro-organismes-ERL CNRS 6300, 17 rue Sully, 21000 Dijon, France
| | - Adeline Simon
- 2 INRA, UMR 1290 BIOGER, Avenue Lucien Brétignières, 78850 Grignon, France
| | - Bérengère Dalmais
- 2 INRA, UMR 1290 BIOGER, Avenue Lucien Brétignières, 78850 Grignon, France
| | - Patrick Frettinger
- 1 Université de Bourgogne, UMR 1347 Agroécologie, Pôle Interactions Plantes Micro-organismes-ERL CNRS 6300, 17 rue Sully, 21000 Dijon, France
- 3 UMR 5240 MAP, Université Lyon 1-CNRS-Bayer CropScience, Villeurbanne, France
| | - Agnès Cimerman
- 2 INRA, UMR 1290 BIOGER, Avenue Lucien Brétignières, 78850 Grignon, France
| | - Marc Fermaud
- 4 INRA, UMR 1065 Santé et Agroécologie du Vignoble, 33882 Villenave d'Ornon, France
| | - Jean Roudet
- 4 INRA, UMR 1065 Santé et Agroécologie du Vignoble, 33882 Villenave d'Ornon, France
| | | | - Christophe Bruel
- 3 UMR 5240 MAP, Université Lyon 1-CNRS-Bayer CropScience, Villeurbanne, France
| | - Mathias Choquer
- 3 UMR 5240 MAP, Université Lyon 1-CNRS-Bayer CropScience, Villeurbanne, France
| | | | | | - Alberto Ferrarini
- 6 Università degli Studi di Verona, Dipartimento di Biotecnologie, Strada Le Grazie 15, 37134 Verona, Italy
| | - Victor Flors
- 7 University of Jaume I, Plant Physiology Section, CAMN, Castellón, 12071, Spain
| | - Pascal Le Pêcheur
- 2 INRA, UMR 1290 BIOGER, Avenue Lucien Brétignières, 78850 Grignon, France
| | - Elise Loisel
- 4 INRA, UMR 1065 Santé et Agroécologie du Vignoble, 33882 Villenave d'Ornon, France
| | - Guillaume Morgant
- 2 INRA, UMR 1290 BIOGER, Avenue Lucien Brétignières, 78850 Grignon, France
| | - Nathalie Poussereau
- 3 UMR 5240 MAP, Université Lyon 1-CNRS-Bayer CropScience, Villeurbanne, France
| | - Jean-Marc Pradier
- 2 INRA, UMR 1290 BIOGER, Avenue Lucien Brétignières, 78850 Grignon, France
| | - Christine Rascle
- 3 UMR 5240 MAP, Université Lyon 1-CNRS-Bayer CropScience, Villeurbanne, France
| | - Lucie Trdá
- 1 Université de Bourgogne, UMR 1347 Agroécologie, Pôle Interactions Plantes Micro-organismes-ERL CNRS 6300, 17 rue Sully, 21000 Dijon, France
| | - Benoit Poinssot
- 1 Université de Bourgogne, UMR 1347 Agroécologie, Pôle Interactions Plantes Micro-organismes-ERL CNRS 6300, 17 rue Sully, 21000 Dijon, France
| | - Muriel Viaud
- 2 INRA, UMR 1290 BIOGER, Avenue Lucien Brétignières, 78850 Grignon, France
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Spence C, Bais H. Role of plant growth regulators as chemical signals in plant-microbe interactions: a double edged sword. CURRENT OPINION IN PLANT BIOLOGY 2015; 27:52-8. [PMID: 26125499 DOI: 10.1016/j.pbi.2015.05.028] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2015] [Revised: 05/21/2015] [Accepted: 05/22/2015] [Indexed: 05/20/2023]
Abstract
Growth regulators act not only as chemicals that modulate plant growth but they also act as signal molecules under various biotic and abiotic stresses. Of all growth regulators, abscisic acid (ABA) is long known for its role in modulating plants response against both biotic and abiotic stress. Although the genetic information for ABA biosynthesis in plants is well documented, the knowledge about ABA biosynthesis in other organisms is still in its infancy. It is known that various microbes including bacteria produce and secrete ABA, but the overall functional significance of why ABA is synthesized by microbes is not known. Here we discuss the functional involvement of ABA biosynthesis by a pathogenic fungus. Furthermore, we propose that ABA biosynthesis in plant pathogenic fungi could be targeted for novel fungicidal discovery.
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Affiliation(s)
- Carla Spence
- Delaware Biotechnology Institute, Newark, DE 19711, United States; Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19716, United States
| | - Harsh Bais
- Delaware Biotechnology Institute, Newark, DE 19711, United States; Department of Plant and Soil Sciences, University of Delaware, Newark, DE 19716, United States.
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50
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Schumacher J, Simon A, Cohrs KC, Traeger S, Porquier A, Dalmais B, Viaud M, Tudzynski B. The VELVET Complex in the Gray Mold Fungus Botrytis cinerea: Impact of BcLAE1 on Differentiation, Secondary Metabolism, and Virulence. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2015; 28:659-74. [PMID: 25625818 DOI: 10.1094/mpmi-12-14-0411-r] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Botrytis cinerea, the gray mold fungus, is an important plant pathogen. Field populations are characterized by variability with regard to morphology, the mode of reproduction (conidiation or sclerotia formation), the spectrum of secondary metabolites (SM), and virulence. Natural variation in bcvel1 encoding the ortholog of Aspergillus nidulans VeA, a member of the VELVET complex, was previously shown to affect light-dependent differentiation, the formation of oxalic acid (OA), and virulence. To gain broader insight into the B. cinerea VELVET complex, an ortholog of A. nidulans LaeA, BcLAE1, a putative interaction partner of BcVEL1, was studied. BcVEL1 but not its truncated versions interacts with BcLAE1 and BcVEL2 (VelB ortholog). In accordance with the expected common as well as specific functions of BcVEL1 and BcLAE1, the deletions of both genes result in similar though not identical phenotypes. Both mutants lost the ability to produce OA, to colonize the host tissue, and to form sclerotia. However, mutants differ with regard to aerial hyphae and conidia formation. Genome-wide expression analyses revealed that BcVEL1 and BcLAE1 have common and distinct target genes. Some of the genes that are underexpressed in both mutants, e.g., those encoding SM-related enzymes, proteases, and carbohydrate-active enzymes, may account for their reduced virulence.
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Affiliation(s)
| | - Adeline Simon
- 2 BIOGER, INRA, Avenue Lucien Brétignières, 78850 Grignon, France
| | - Kim C Cohrs
- 1 IBBP, WWU Münster, Schlossplatz 8, 48143 Münster, Germany
| | | | - Antoine Porquier
- 2 BIOGER, INRA, Avenue Lucien Brétignières, 78850 Grignon, France
- 3 Université Paris-Sud, 91405 Orsay, France
| | | | - Muriel Viaud
- 2 BIOGER, INRA, Avenue Lucien Brétignières, 78850 Grignon, France
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