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For: Dollhopf SL, Hyun JH, Smith AC, Adams HJ, O'Brien S, Kostka JE. Quantification of ammonia-oxidizing bacteria and factors controlling nitrification in salt marsh sediments. Appl Environ Microbiol 2005;71:240-6. [PMID: 15640193 PMCID: PMC544235 DOI: 10.1128/aem.71.1.240-246.2005] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Gios E, Verbruggen E, Audet J, Burns R, Butterbach-Bahl K, Espenberg M, Fritz C, Glatzel S, Jurasinski G, Larmola T, Mander Ü, Nielsen C, Rodriguez AF, Scheer C, Zak D, Silvennoinen HM. Unraveling microbial processes involved in carbon and nitrogen cycling and greenhouse gas emissions in rewetted peatlands by molecular biology. BIOGEOCHEMISTRY 2024;167:609-629. [PMID: 38707517 PMCID: PMC11068585 DOI: 10.1007/s10533-024-01122-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Accepted: 01/22/2024] [Indexed: 05/07/2024]
2
Huda N, Rana MR, Huq MA, Al-Mamun A, Rahman ST, Alam MK, Rahman MM. Understanding vermicompost and organic manure interactions: impact on toxic elements, nitrification activity, comammox Nitrospira inopinata, and archaea/bacteria. ENVIRONMENTAL MONITORING AND ASSESSMENT 2024;196:355. [PMID: 38466496 DOI: 10.1007/s10661-024-12491-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 02/19/2024] [Indexed: 03/13/2024]
3
Bulseco AN, Murphy AE, Giblin AE, Tucker J, Sanderman J, Bowen JL. Marsh sediments chronically exposed to nitrogen enrichment contain degraded organic matter that is less vulnerable to decomposition via nitrate reduction. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;915:169681. [PMID: 38163591 DOI: 10.1016/j.scitotenv.2023.169681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 12/23/2023] [Accepted: 12/23/2023] [Indexed: 01/03/2024]
4
Martínez-Colón M, Capparelli MV, Kolb D, Moulatlet GM. Trophic transfer mechanisms of potentially toxic elements from sediment and plant leaves (Rhizophora mangle) to fiddler crabs (Minuca rapax) (). MARINE POLLUTION BULLETIN 2023;197:115786. [PMID: 37988967 DOI: 10.1016/j.marpolbul.2023.115786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 10/23/2023] [Accepted: 11/11/2023] [Indexed: 11/23/2023]
5
Yang S, Dong M, Lu H, Cai Z, Ge M, Xing J, Huang H, Huang Y, Sun G, Zhou S, Xu M. Explaining nitrogen turnover in sediments and water through variations in microbial community composition and potential function. CHEMOSPHERE 2023;344:140379. [PMID: 37827459 DOI: 10.1016/j.chemosphere.2023.140379] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 09/20/2023] [Accepted: 10/05/2023] [Indexed: 10/14/2023]
6
Sun X, Tan E, Wang B, Gan Z, Yang J, Han J, Zhang X, Kao SJ, King G, Dong H, Jiang H. Salinity change induces distinct climate feedbacks of nitrogen removal in saline lakes. WATER RESEARCH 2023;245:120668. [PMID: 37776589 DOI: 10.1016/j.watres.2023.120668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/19/2023] [Accepted: 09/24/2023] [Indexed: 10/02/2023]
7
Booth JM, Fusi M, Marasco R, Daffonchio D. The microbial landscape in bioturbated mangrove sediment: A resource for promoting nature-based solutions for mangroves. Microb Biotechnol 2023. [PMID: 37209285 PMCID: PMC10364319 DOI: 10.1111/1751-7915.14273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2023] [Revised: 04/25/2023] [Accepted: 04/30/2023] [Indexed: 05/22/2023]  Open
8
Xiong G, Zhu X, Wu J, Liu M, Yang Y, Zeng X. Seawater intrusion alters nitrogen cycling patterns through hydrodynamic behavior and biochemical reactions: Based on Bayesian isotope mixing model and microbial functional network. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023;867:161368. [PMID: 36621512 DOI: 10.1016/j.scitotenv.2022.161368] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 12/07/2022] [Accepted: 12/30/2022] [Indexed: 06/17/2023]
9
Akter R, Mukhles MB, Rahman MM, Rana MR, Huda N, Ferdous J, Rahman F, Rafi MH, Biswas SK. Effect of pesticides on nitrification activity and its interaction with chemical fertilizer and manure in long-term paddy soils. CHEMOSPHERE 2022;304:135379. [PMID: 35716712 DOI: 10.1016/j.chemosphere.2022.135379] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 06/12/2022] [Accepted: 06/13/2022] [Indexed: 06/15/2023]
10
Ooi SK, Barry A, Lawrence BA, Elphick CS, Helton AM. Vegetation zones as indicators of denitrification potential in salt marshes. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2022;32:e2630. [PMID: 35403778 PMCID: PMC9539531 DOI: 10.1002/eap.2630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 11/18/2021] [Accepted: 01/18/2022] [Indexed: 06/14/2023]
11
Capparelli MV, Martínez-Colón M, Lucas-Solis O, Valencia-Castañeda G, Celis-Hernández O, Ávila E, Moulatlet GM. Can the bioturbation activity of the fiddler crab Minuca rapax modify the distribution of microplastics in sediments? MARINE POLLUTION BULLETIN 2022;180:113798. [PMID: 35665620 DOI: 10.1016/j.marpolbul.2022.113798] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 05/18/2022] [Accepted: 05/24/2022] [Indexed: 06/15/2023]
12
Fusi M, Booth JM, Marasco R, Merlino G, Garcias-Bonet N, Barozzi A, Garuglieri E, Mbobo T, Diele K, Duarte CM, Daffonchio D. Bioturbation Intensity Modifies the Sediment Microbiome and Biochemistry and Supports Plant Growth in an Arid Mangrove System. Microbiol Spectr 2022;10:e0111722. [PMID: 35647697 PMCID: PMC9241789 DOI: 10.1128/spectrum.01117-22] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Accepted: 05/06/2022] [Indexed: 01/04/2023]  Open
13
Rolando JL, Kolton M, Song T, Kostka JE. The core root microbiome of Spartina alterniflora is predominated by sulfur-oxidizing and sulfate-reducing bacteria in Georgia salt marshes, USA. MICROBIOME 2022;10:37. [PMID: 35227326 PMCID: PMC8886783 DOI: 10.1186/s40168-021-01187-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 10/25/2021] [Indexed: 05/12/2023]
14
Jones SF, Schutte CA, Roberts BJ, Thorne KM. Seasonal impoundment management reduces nitrogen cycling but not resilience to surface fire in a tidal wetland. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022;303:114153. [PMID: 34875564 DOI: 10.1016/j.jenvman.2021.114153] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2021] [Revised: 10/25/2021] [Accepted: 11/22/2021] [Indexed: 06/13/2023]
15
Wei H, Lin X. Shifts in the relative abundance and potential rates of sediment ammonia-oxidizing archaea and bacteria along environmental gradients of an urban river-estuary-adjacent sea continuum. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;771:144824. [PMID: 33545473 DOI: 10.1016/j.scitotenv.2020.144824] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 12/21/2020] [Accepted: 12/22/2020] [Indexed: 06/12/2023]
16
Wang DQ, Zhou CH, Nie M, Gu JD, Quan ZX. Abundance and niche specificity of different types of complete ammonia oxidizers (comammox) in salt marshes covered by different plants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;768:144993. [PMID: 33736320 DOI: 10.1016/j.scitotenv.2021.144993] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2020] [Revised: 12/24/2020] [Accepted: 12/31/2020] [Indexed: 06/12/2023]
17
Yin Z, Yang X, Wang X, Wang S. Effects of operating conditions on microbial consortium of the heterotrophic ammonia oxidation process. BIORESOURCE TECHNOLOGY 2021;328:124823. [PMID: 33592544 DOI: 10.1016/j.biortech.2021.124823] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 01/27/2021] [Accepted: 01/29/2021] [Indexed: 06/12/2023]
18
Li N, Nie M, Li B, Wu J, Zhao J. Contrasting effects of the aboveground litter of native Phragmites australis and invasive Spartina alterniflora on nitrification and denitrification. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;764:144283. [PMID: 33387763 DOI: 10.1016/j.scitotenv.2020.144283] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Revised: 11/29/2020] [Accepted: 11/29/2020] [Indexed: 06/12/2023]
19
Bernhard AE, Beltz J, Giblin AE, Roberts BJ. Biogeography of ammonia oxidizers in New England and Gulf of Mexico salt marshes and the potential importance of comammox. ISME COMMUNICATIONS 2021;1:9. [PMID: 36717686 PMCID: PMC9723745 DOI: 10.1038/s43705-021-00008-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 02/19/2021] [Accepted: 02/25/2021] [Indexed: 02/03/2023]
20
Kolton M, Rolando JL, Kostka JE. Elucidation of the rhizosphere microbiome linked to Spartina alterniflora phenotype in a salt marsh on Skidaway Island, Georgia, USA. FEMS Microbiol Ecol 2020;96:5813622. [PMID: 32227167 DOI: 10.1093/femsec/fiaa026] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2019] [Accepted: 03/23/2020] [Indexed: 01/04/2023]  Open
21
Yu J, Zhang Y, Zhong J, Ding H, Zheng X, Wang Z, Zhang Y. Water-level alterations modified nitrogen cycling across sediment-water interface in the Three Gorges Reservoir. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020;27:25886-25898. [PMID: 31713142 DOI: 10.1007/s11356-019-06656-z] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 09/30/2019] [Indexed: 06/10/2023]
22
Moncada C, Hassenrück C, Gärdes A, Conaco C. Microbial community composition of sediments influenced by intensive mariculture activity. FEMS Microbiol Ecol 2019;95:5289376. [PMID: 30649441 DOI: 10.1093/femsec/fiz006] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Accepted: 01/10/2019] [Indexed: 12/22/2022]  Open
23
Caffrey JM, Bonaglia S, Conley DJ. Short exposure to oxygen and sulfide alter nitrification, denitrification, and DNRA activity in seasonally hypoxic estuarine sediments. FEMS Microbiol Lett 2019;366:5266299. [PMID: 30596977 PMCID: PMC6343015 DOI: 10.1093/femsle/fny288] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Accepted: 12/14/2018] [Indexed: 02/03/2023]  Open
24
Dale H, Taylor JD, Solan M, Lam P, Cunliffe M. Polychaete mucopolysaccharide alters sediment microbial diversity and stimulates ammonia-oxidising functional groups. FEMS Microbiol Ecol 2018;95:5247715. [DOI: 10.1093/femsec/fiy234] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Accepted: 12/12/2018] [Indexed: 12/17/2022]  Open
25
Burrowing Crabs Weaken Mutualism Between Foundation Species. Ecosystems 2018. [DOI: 10.1007/s10021-018-0301-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
26
Urakawa H, Rajan S, Feeney ME, Sobecky PA, Mortazavi B. Ecological response of nitrification to oil spills and its impact on the nitrogen cycle. Environ Microbiol 2018;21:18-33. [DOI: 10.1111/1462-2920.14391] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Revised: 08/11/2018] [Accepted: 08/17/2018] [Indexed: 01/01/2023]
27
Angell JH, Peng X, Ji Q, Craick I, Jayakumar A, Kearns PJ, Ward BB, Bowen JL. Community Composition of Nitrous Oxide-Related Genes in Salt Marsh Sediments Exposed to Nitrogen Enrichment. Front Microbiol 2018;9:170. [PMID: 29483902 PMCID: PMC5816060 DOI: 10.3389/fmicb.2018.00170] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2017] [Accepted: 01/25/2018] [Indexed: 11/13/2022]  Open
28
Wang W, Dudel EG. Nitrogen species coupled with transpiration enhance Fe plaque assisted aquatic uranium removal via rhizofiltration of Phragmites australis Trin ex Steud. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2018;181:138-146. [PMID: 29150188 DOI: 10.1016/j.jenvrad.2017.11.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Revised: 08/27/2017] [Accepted: 11/07/2017] [Indexed: 06/07/2023]
29
Nacke H, Schöning I, Schindler M, Schrumpf M, Daniel R, Nicol GW, Prosser JI. Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity. FEMS Microbiol Ecol 2017;93:4563574. [DOI: 10.1093/femsec/fix144] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Accepted: 10/23/2017] [Indexed: 11/13/2022]  Open
30
Duff AM, Zhang LM, Smith CJ. Small-scale variation of ammonia oxidisers within intertidal sediments dominated by ammonia-oxidising bacteria Nitrosomonas sp. amoA genes and transcripts. Sci Rep 2017;7:13200. [PMID: 29038459 PMCID: PMC5643298 DOI: 10.1038/s41598-017-13583-x] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Accepted: 09/25/2017] [Indexed: 11/08/2022]  Open
31
Hinshaw SE, Tatariw C, Flournoy N, Kleinhuizen A, Taylor C, Sobecky PA, Mortazavi B. Vegetation Loss Decreases Salt Marsh Denitrification Capacity: Implications for Marsh Erosion. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2017;51:8245-8253. [PMID: 28616973 DOI: 10.1021/acs.est.7b00618] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
32
Kim SH, Lee JS, Hyun JH. Extremely high sulfate reduction, sediment oxygen demand and benthic nutrient flux associated with a large-scale artificial dyke and its implication to benthic-pelagic coupling in the Yeongsan River estuary, Yellow Sea. MARINE POLLUTION BULLETIN 2017;120:126-135. [PMID: 28499584 DOI: 10.1016/j.marpolbul.2017.04.047] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2016] [Revised: 04/25/2017] [Accepted: 04/26/2017] [Indexed: 06/07/2023]
33
Yang WH, Silver WL. Gross nitrous oxide production drives net nitrous oxide fluxes across a salt marsh landscape. GLOBAL CHANGE BIOLOGY 2016;22:2228-2237. [PMID: 26718748 DOI: 10.1111/gcb.13203] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Accepted: 12/15/2015] [Indexed: 06/05/2023]
34
Yu J, Fan C, Zhong J, Zhang L, Zhang L, Wang C, Yao X. Effects of sediment dredging on nitrogen cycling in Lake Taihu, China: Insight from mass balance based on a 2-year field study. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2016;23:3871-3883. [PMID: 26499196 DOI: 10.1007/s11356-015-5517-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2015] [Accepted: 09/28/2015] [Indexed: 06/05/2023]
35
Fan H, Bolhuis H, Stal LJ. Nitrification and Nitrifying Bacteria in a Coastal Microbial Mat. Front Microbiol 2015;6:1367. [PMID: 26648931 PMCID: PMC4664649 DOI: 10.3389/fmicb.2015.01367] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2015] [Accepted: 11/17/2015] [Indexed: 11/13/2022]  Open
36
Diepens NJ, Dimitrov MR, Koelmans AA, Smidt H. Molecular Assessment of Bacterial Community Dynamics and Functional End Points during Sediment Bioaccumulation Tests. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015;49:13586-13595. [PMID: 26466173 DOI: 10.1021/acs.est.5b02992] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
37
Yuan J, Ding W, Liu D, Kang H, Freeman C, Xiang J, Lin Y. Exotic Spartina alterniflora invasion alters ecosystem-atmosphere exchange of CH4 and N2O and carbon sequestration in a coastal salt marsh in China. GLOBAL CHANGE BIOLOGY 2015;21:1567-1580. [PMID: 25367159 DOI: 10.1111/gcb.12797] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2014] [Accepted: 09/30/2014] [Indexed: 06/04/2023]
38
Bernhard AE, Dwyer C, Idrizi A, Bender G, Zwick R. Long-term impacts of disturbance on nitrogen-cycling bacteria in a New England salt marsh. Front Microbiol 2015;6:46. [PMID: 25699033 PMCID: PMC4316780 DOI: 10.3389/fmicb.2015.00046] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2014] [Accepted: 01/13/2015] [Indexed: 12/02/2022]  Open
39
Ochoa-Izaguirre MJ, Soto-Jiménez MF. Variability in nitrogen stable isotope ratios of macroalgae: consequences for the identification of nitrogen sources. JOURNAL OF PHYCOLOGY 2015;51:46-65. [PMID: 26986258 DOI: 10.1111/jpy.12250] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2013] [Accepted: 07/30/2014] [Indexed: 06/05/2023]
40
Damashek J, Smith JM, Mosier AC, Francis CA. Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta. Front Microbiol 2015;5:743. [PMID: 25620958 PMCID: PMC4287051 DOI: 10.3389/fmicb.2014.00743] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2014] [Accepted: 12/08/2014] [Indexed: 11/17/2022]  Open
41
Yang WH, Traut BH, Silver WL. Microbially mediated nitrogen retention and loss in a salt marsh soil. Ecosphere 2015. [DOI: 10.1890/es14-00179.1] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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amoA Gene abundances and nitrification potential rates suggest that benthic ammonia-oxidizing bacteria and not Archaea dominate N cycling in the Colne Estuary, United Kingdom. Appl Environ Microbiol 2014;81:159-65. [PMID: 25326303 DOI: 10.1128/aem.02654-14] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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ISNANSETYO ALIM, GETSU SAI, SEGUCHI MASAHIRO, KORIYAMA MASUMI. Independent Effects of Temperature, Salinity, Ammonium Concentration and pH on Nitrification Rate of the Ariake Seawater Above Mud Sediment. HAYATI JOURNAL OF BIOSCIENCES 2014. [DOI: 10.4308/hjb.21.1.21] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
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Horel A, Bernard RJ, Mortazavi B. Impact of crude oil exposure on nitrogen cycling in a previously impacted Juncus roemerianus salt marsh in the northern Gulf of Mexico. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2014;21:6982-6993. [PMID: 24510533 DOI: 10.1007/s11356-014-2599-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2013] [Accepted: 01/26/2014] [Indexed: 06/03/2023]
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Stauffert M, Duran R, Gassie C, Cravo-Laureau C. Response of archaeal communities to oil spill in bioturbated mudflat sediments. MICROBIAL ECOLOGY 2014;67:108-119. [PMID: 24057322 DOI: 10.1007/s00248-013-0288-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2013] [Accepted: 09/03/2013] [Indexed: 06/02/2023]
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Curado G, Rubio-Casal AE, Figueroa E, Grewell BJ, Castillo JM. Native plant restoration combats environmental change: development of carbon and nitrogen sequestration capacity using small cordgrass in European salt marshes. ENVIRONMENTAL MONITORING AND ASSESSMENT 2013;185:8439-8449. [PMID: 23591677 DOI: 10.1007/s10661-013-3185-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2013] [Accepted: 03/26/2013] [Indexed: 06/02/2023]
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Le Roux X, Schmid B, Poly F, Barnard RL, Niklaus PA, Guillaumaud N, Habekost M, Oelmann Y, Philippot L, Salles JF, Schloter M, Steinbeiss S, Weigelt A. Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands. PLoS One 2013;8:e61069. [PMID: 23613785 PMCID: PMC3629084 DOI: 10.1371/journal.pone.0061069] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2012] [Accepted: 03/05/2013] [Indexed: 11/18/2022]  Open
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Peng X, Yando E, Hildebrand E, Dwyer C, Kearney A, Waciega A, Valiela I, Bernhard AE. Differential responses of ammonia-oxidizing archaea and bacteria to long-term fertilization in a New England salt marsh. Front Microbiol 2013;3:445. [PMID: 23346081 PMCID: PMC3551258 DOI: 10.3389/fmicb.2012.00445] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2012] [Accepted: 12/31/2012] [Indexed: 11/13/2022]  Open
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Beman JM, Bertics VJ, Braunschweiler T, Wilson JM. Quantification of ammonia oxidation rates and the distribution of ammonia-oxidizing Archaea and Bacteria in marine sediment depth profiles from Catalina Island, California. Front Microbiol 2012;3:263. [PMID: 22837756 PMCID: PMC3403348 DOI: 10.3389/fmicb.2012.00263] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2012] [Accepted: 07/04/2012] [Indexed: 11/28/2022]  Open
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Jung J, Yeom J, Han J, Kim J, Park W. Seasonal changes in nitrogen-cycle gene abundances and in bacterial communities in acidic forest soils. J Microbiol 2012;50:365-73. [PMID: 22752898 DOI: 10.1007/s12275-012-1465-2] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2011] [Accepted: 02/28/2012] [Indexed: 11/26/2022]
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