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Dutilloy E, Arias AA, Richet N, Guise JF, Duban M, Leclere V, Selim S, Jacques P, Jacquard C, Clément C, Ait Barka E, Esmaeel Q. Bacillus velezensis BE2 controls wheat and barley diseases by direct antagonism and induced systemic resistance. Appl Microbiol Biotechnol 2024; 108:64. [PMID: 38189957 DOI: 10.1007/s00253-023-12864-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 10/19/2023] [Accepted: 11/05/2023] [Indexed: 01/09/2024]
Abstract
Wheat and barley rank among the main crops cultivated on a global scale, providing the essential nutritional foundation for both humans and animals. Nevertheless, these crops are vulnerable to several fungal diseases, such as Septoria tritici blotch and net blotch, which significantly reduce yields by adversely affecting leaves and grain quality. To mitigate the effect of these diseases, chemical fungicides have proven to be genuinely effective; however, they impose a serious environmental burden. Currently, biocontrol agents have attracted attention as a sustainable alternative to fungicides, offering an eco-friendly option. The study aimed to assess the efficacy of Bacillus velezensis BE2 in reducing disease symptoms caused by Zymoseptoria tritici and Pyrenophora teres. This bacterium exhibited significant antagonistic effects in vitro by suppressing fungal development when pathogens and the beneficial strain were in direct confrontation. These findings were subsequently confirmed through microscopic analysis, which illustrated the strain's capacity to inhibit spore germination and mycelial growth in both pathogens. Additionally, the study analysed the cell-free supernatant of the bacterium using UPLC-MS (ultra-performance liquid chromatography-mass spectrometry). The results revealed that strain BE2 produces, among other metabolites, different families of cyclic lipopeptides that may be involved in biocontrol. Furthermore, the beneficial effects of strain BE2 in planta were assessed by quantifying the fungal DNA content directly at the leaf level after bacterization, using two different application methods (foliar and drenching). The results indicated that applying the beneficial bacterium at the root level significantly reduced pathogens pressure. Finally, gene expression analysis of different markers showed that BE2 application induced a priming effect within the first hours after infection. KEY POINTS: • BE2 managed Z. tritici and P. teres by direct antagonism and induced systemic resistance. • Strain BE2 produced seven metabolite families, including three cyclic lipopeptides. • Application of strain BE2 at the root level triggered plant defense mechanisms.
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Affiliation(s)
- Emma Dutilloy
- Université de Reims Champagne Ardenne, INRAE, RIBP USC 1488, 51100, Reims, France
| | - Anthony Arguëlles Arias
- Microbial Processes and Interactions Laboratory, Terra Teaching and Research Center, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
| | - Nicolas Richet
- Université de Reims Champagne Ardenne, Plateau Technique Mobile de Cytométrie Environnementale MOBICYTE, URCA/INERIS, UFR Sciences Exactes Et Naturelles, Reims, France
| | - Jean-François Guise
- Université de Reims Champagne Ardenne, INRAE, RIBP USC 1488, 51100, Reims, France
| | - Matthieu Duban
- Université de Lille, Université de Liège, UMRT, 1158 BioEcoAgro, Institut Charles Viollette, 59000, Lille, France
| | - Valérie Leclere
- Université de Lille, Université de Liège, UMRT, 1158 BioEcoAgro, Institut Charles Viollette, 59000, Lille, France
| | - Sameh Selim
- AGHYLE UP 2018.C101, SFR Condorcet FR CNRS 3417, Institut Polytechnique UniLaSalle, 19 Rue Pierre Waguet, BP 30313, F-60026, Beauvais Cedex, France
| | - Philippe Jacques
- Microbial Processes and Interactions Laboratory, Terra Teaching and Research Center, Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
| | - Cédric Jacquard
- Université de Reims Champagne Ardenne, INRAE, RIBP USC 1488, 51100, Reims, France
| | - Christophe Clément
- Université de Reims Champagne Ardenne, INRAE, RIBP USC 1488, 51100, Reims, France
| | - Essaïd Ait Barka
- Université de Reims Champagne Ardenne, INRAE, RIBP USC 1488, 51100, Reims, France
| | - Qassim Esmaeel
- Université de Reims Champagne Ardenne, INRAE, RIBP USC 1488, 51100, Reims, France.
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Haq IU, Rahim K, Yahya G, Ijaz B, Maryam S, Paker NP. Eco-smart biocontrol strategies utilizing potent microbes for sustainable management of phytopathogenic diseases. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2024; 44:e00859. [PMID: 39308938 PMCID: PMC11415593 DOI: 10.1016/j.btre.2024.e00859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 09/03/2024] [Accepted: 09/08/2024] [Indexed: 09/25/2024]
Abstract
Plants have an impact on the economy because they are used in the food and medical industries. Plants are a source of macro- and micronutrients for the health of humans and animals; however, the rise in microbial diseases has put plant health and yield at risk. Because there are insufficient controls, microbial infections annually impact approximately 25 % of the world's plant crops. Alternative strategies, such as biocontrol, are required to fight these illnesses. This review discusses the potential uses of recently discovered microorganisms because they are safe, effective, and unlikely to cause drug resistance. They have no negative effects on soil microbiology or the environment because they are environmentally benign. Biological control enhances indigenous microbiomes by reducing bacterial wilt, brown blotch, fire blight, and crown gall. More research is required to make these biocontrol agents more stable, effective, and less toxic before they can be used in commercial settings.
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Affiliation(s)
- Ihtisham Ul Haq
- Programa de Pos-graduacao em Invacao Tecnologia, Universidade de Minas Gerais Belo Horizonte, Brazil
- Department of Physical Chemistry and Technology of Polymers, Silesian University of Technology, M. Strzody 9, 44-100, Gliwice, Poland
- Joint Doctoral School, Silesian University of Technology, Akademicka 2A, 44-100, Gliwice, Poland
| | - Kashif Rahim
- College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China
| | - Galal Yahya
- Department of Microbiology and Immunology, Faculty of Pharmacy, Zagazig University, Zagazig, 44519, Egypt
- Department of Molecular Genetics, Faculty of Biology, Technical University of Kaiserslautern, Paul-Ehrlich Str. 24, 67663, Kaiserslautern, Germany
| | - Bushra Ijaz
- Department of Functional and Evolutionary Ecology, University of Vienna, Austria
| | - Sajida Maryam
- Department of Physical Chemistry and Technology of Polymers, Silesian University of Technology, M. Strzody 9, 44-100, Gliwice, Poland
- Joint Doctoral School, Silesian University of Technology, Akademicka 2A, 44-100, Gliwice, Poland
| | - Najeeba Parre Paker
- Department of Biology, University of York, Wentworth Way, York, YO10 5DD, UK
- Department of Plant Sciences, Quaid-i-Azam University, Islamabad, 45320, Pakistan
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Wu X, Cai J, Wang Z, Li W, Chen G, Bai Y. Diversity and community distribution of soil bacterial in the Yellow River irrigation area of Ningxia, China. PLoS One 2024; 19:e0311087. [PMID: 39348371 PMCID: PMC11441701 DOI: 10.1371/journal.pone.0311087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Accepted: 09/11/2024] [Indexed: 10/02/2024] Open
Abstract
The bacterial community performs an essential ecological role in maintaining agriculture systems. The roles of bacteria in the forest, marine, and agricultural systems have been studied extensively and intensively. However, similar studies in the areas irrigated by the Yellow River remain limited. In this study, we used Illumina sequencing analysis with the 16S rRNA method to analyze the bacterial diversity, community structure, and influencing factors in soil samples from eight regions of the Yellow River irrigation area in northwestern China. The bacterial community structure and diversity varied among samples from the eight regions. The samples differed significantly in terms of the bacterial community composition. Proteobacteria (approximately 12.4%-55.7%) accounted for the largest proportion and was the dominant bacteria, followed by Actinobacteria (approximately 9.2%-39.7%), Bacteroidetes (approximately 1.8%-21.5%), and Chloroflexi (approximately 2.7%-12.6%). Among the physicochemical variables, the soil pH in the eight regions was mildly alkaline, and the total nitrogen, total phosphorus, and total potassium contents in the soils differed significantly. However, the trend in the variations of the above variables was essentially similar. Soil bacteria in Yongning county had greater Chao1, Shannon-Wiener, and Simpson indices than those in the other regions. Notably, soil moisture, organic matter, and total nitrogen were recognized as the primary factors influencing the bacterial community in the Yellow River irrigation area. Our results revealed the laws of variation in soil bacterial diversity and community composition in the Yellow River irrigation area. Our findings could be beneficial for maintaining sustainable ecological practices in the Yellow River irrigation area.
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Affiliation(s)
- Xia Wu
- Institute of Agricultural Resources and Environment, Ningxia Academy of Agriculture and Forestry Science, Yinchuan, China
| | - Jinjun Cai
- Institute of Agricultural Resources and Environment, Ningxia Academy of Agriculture and Forestry Science, Yinchuan, China
| | - Zhangjun Wang
- Institute of Agricultural Resources and Environment, Ningxia Academy of Agriculture and Forestry Science, Yinchuan, China
| | - Weiqian Li
- Institute of Agricultural Resources and Environment, Ningxia Academy of Agriculture and Forestry Science, Yinchuan, China
| | - Gang Chen
- Institute of Agricultural Resources and Environment, Ningxia Academy of Agriculture and Forestry Science, Yinchuan, China
| | - Yangyang Bai
- Institute of Agricultural Resources and Environment, Ningxia Academy of Agriculture and Forestry Science, Yinchuan, China
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Kumar P, Joshi AK, Sharma N, Lata S, Mehmood S, Ahlawat YK, Malik A, Moussa IM, Kerketta A, Soni P. Integrative approaches to improve litchi (Litchi chinensis Sonn.) plant health using bio-transformations and entomopathogenic fungi. BMC PLANT BIOLOGY 2024; 24:902. [PMID: 39350012 PMCID: PMC11441118 DOI: 10.1186/s12870-024-05604-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Accepted: 09/19/2024] [Indexed: 10/04/2024]
Abstract
Bio-transformations refer to the chemical modifications made by an organism on a chemical compound that often involves the interaction of plants with microbes to alter the chemical composition of soil or plant. Integrating bio-transformations and entomopathogenic fungi into litchi cultivation can enhance symbiotic relationships, microbial enzymatic activity in rhizosphere, disease suppression and promote overall plant health. The integration of biological formulations and entomopathogenic fungi can significantly influence growth, nutrient dynamics, physiology, and rhizosphere microbiome of air-layered litchi (Litchi chinensis Sonn.) saplings. Biological modifications included, K-mobilizers, AM fungi, Pseudomonas florescence and Azotobacter chroococcum along with Metarhizium, entomopathogenic fungi have been used. The treatments included, T1-Litchi orchard soil + sand (1:1); T2-Sand + AM fungi + Azotobacter chroococcum (1:2:1); T3-Sand + Pseudomonas florecence + K-mobilizer (1:1:1); T4- AM fungi + K-mobilizers (1:1); T5, P. Florecence + A. chroococcum + K-mobilizer (1:1:1); T6-Sand + P. florecence (1:2) and T7-Uninoculated control for field performance. Treatments T4-T6 were further uniformly amended with drenching of Metarrhizium in rhizosphere. T2 application significantly increased resident microbe survival, total chlorophyll content and root soil ratio in seedlings. A. chroococcum, Pseudomonas, K-mobilizers and AM fungi increased in microbial biomass of 2.59, 3.39, 2.42 and 2.77 times, respectively. Acidic phosphatases, dehydrogenases and alkaline phosphatases were increased in rhizosphere. Leaf nutrients reflected through DOP were considerably altered by T2 treatment. Based on Eigen value, PCA-induced changes at biological modifications showed maximum total variance. The study inferred that the bio-transformations through microbial inoculants and entomopathogenic fungi could be an encouraging strategy to enhance the growth of plants, health and productivity. Such practices align well with the goals of sustainable agriculture through biological means by reducing dependency on chemical inputs. By delving into these aspects, the research gaps including microbial processes, competitive and symbiotic relationships, resistance in microbes and how complex interactions among bio-transformations, entomopathogenic fungi and microbes can significantly impact the health and productivity of litchi. Understanding and harnessing these interactions can lead to more effective and sustainable farming practices.
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Affiliation(s)
- Pramod Kumar
- Department of Fruit Science, Dr YS Parmar University of Horticulture and Forestry, Nauni, Solan, Himachal Pradesh, India
| | - A K Joshi
- Dr YS Parmar University of Horticulture and Forestry, Dhaulakuan, Sirmour, Himachal Pradesh, India
| | - Nisha Sharma
- Department of Basic Sciences, Dr YS Parmar University of Horticulture and Forestry, Nauni, Solan, Himachal Pradesh, India.
- Centre for Sustainability and Planetary Health, Global Health Research and Innovations (GHRIC), Toronto, ON, M6G2W6, Canada.
| | - Suman Lata
- Dr YS Parmar University of Horticulture and Forestry, Dhaulakuan, Sirmour, Himachal Pradesh, India
| | - Sajid Mehmood
- Nanomaterials and Crystal Design Laboratory, Department of Chemistry, Indira Gandhi National Tribal University, Amarkantak, 484887, Madhya Pradesh, India
| | - Yogesh K Ahlawat
- University Centre for Research and Development, Chandigarh University, Gharuan, Mohali, 140413, Punjab, India.
- Centre of Research Impact and Outcome, Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura, 140401, Punjab, India.
| | - Anurag Malik
- Division of Research and Innovation, Uttaranchal University, Dehradun, 248007, Uttarakhand, India
| | - Ihab Mohamed Moussa
- Department of Botany and Microbiology, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Anurag Kerketta
- RamPrasad Potai College of Agriculture and Research station, Indira Gandhi Krishi Vishwavidyalya, 492012, Raipur, Chhatisgarh, India
| | - Praful Soni
- College of Agriculture and Research station, Indira Gandhi Krishi Vishwavidyalya, 492012, Mahasamund, Raipur, Chhatisgarh, India
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Drożdżyński P, Rutkowska N, Rodziewicz M, Marchut-Mikołajczyk O. Bioactive Compounds Produced by Endophytic Bacteria and Their Plant Hosts-An Insight into the World of Chosen Herbaceous Ruderal Plants in Central Europe. Molecules 2024; 29:4456. [PMID: 39339451 PMCID: PMC11433698 DOI: 10.3390/molecules29184456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 09/09/2024] [Accepted: 09/17/2024] [Indexed: 09/30/2024] Open
Abstract
The natural environment has been significantly impacted by human activity, urbanization, and industrialization, leading to changes in living organisms and their adaptation to harsh conditions. Species, including plants, adapt to these changes by creating mechanisms and modifications that allow them to survive in harsh environments. Also, endophytes, microorganisms that live inside plants, can support plant growth and defense mechanisms in these conditions by synthesizing antimicrobial secondary metabolites. What is more, endophytes produce bioactive metabolites, including alkaloids, amines, and peptides, which play a crucial role in the relationship between endophytes and their host organisms. Endophytes themselves benefit from this by creating a stable environment for their survival and development. The aim of this review is to gain insight into endophytic bioactive metabolites from chosen synanthropic ruderal plants. Industrial activities release pollutants like heavy metals, by-products, and waste, which challenge living organisms and require adaptation. Synanthropic plants, where endophytes are abundant, are particularly valuable for their bioactive compounds, which are used in agriculture and medicine. This review presents, among others, endophytes of herbaceous ruderal plants from central Europe-Chelidonium majus L., Urtica dioica L., Plantago lanceolata L., Matricaria chamomilla L., Equisetum arvense L., Oenothera biennis L., Silybum marianum L., and Mentha piperita L.
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Affiliation(s)
- Piotr Drożdżyński
- Institute of Molecular and Industrial Biotechnology, Faculty of Biotechnology and Food Sciences, Lodz University of Technology, Stefanowskiego 2/22, 90-537 Lodz, Poland; (N.R.); (M.R.); (O.M.-M.)
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6
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Su L, Zhang J, Fan J, Li D, Zhao M, Wang Y, Pan H, Zhao L, Zhang X. Antagonistic Mechanism Analysis of Bacillus velezensis JLU-1, a Biocontrol Agent of Rice Pathogen Magnaporthe oryzae. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:19657-19666. [PMID: 39190007 DOI: 10.1021/acs.jafc.4c05353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
Abstract
Magnaporthe oryzae, the causal agent of rice blast, is a fungal disease pathogen. Bacillus spp. have emerged as the most promising biological control agent alternative to chemical fungicides. In this study, the bacterial strain JLU-1 with significant antagonistic activity isolated from the rhizosphere soil of rice was identified as Bacillus velezensis through whole-genome sequencing, average nucleotide identity analysis, and 16S rRNA gene sequencing. Twelve gene clusters for secondary metabolite synthesis were identified in JLU-1. Furthermore, 3 secondary metabolites were identified in JLU-1, and the antagonistic effect of secondary metabolites against fungal pathogens was confirmed. Exposure to JLU-1 reduced the virulence of M. oryzae, and JLU-1 has the ability to induce the reactive oxygen species production of rice and improve the salt tolerance of rice. All of these results indicated that JLU-1 and its secondary metabolites have the promising potential to be developed into a biocontrol agent to control fungal diseases.
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Affiliation(s)
- Longhao Su
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Jiyue Zhang
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Jinyu Fan
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Dan Li
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Meixi Zhao
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Yichi Wang
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Hongyu Pan
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Lei Zhao
- College of Plant Science, Jilin University, Changchun 130062, China
| | - Xianghui Zhang
- College of Plant Science, Jilin University, Changchun 130062, China
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Jiang Z, Wang J, Cao K, Liu Y, Wang B, Wang X, Wang Y, Jiang D, Cao B, Zhang Y. Foliar application of selenium and gibberellins reduce cadmium accumulation in soybean by regulating interplay among rhizosphere soil metabolites, bacteria community and cadmium speciation. JOURNAL OF HAZARDOUS MATERIALS 2024; 476:134868. [PMID: 38897119 DOI: 10.1016/j.jhazmat.2024.134868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Revised: 04/26/2024] [Accepted: 06/07/2024] [Indexed: 06/21/2024]
Abstract
Both selenium (Se) and gibberellins (GA3) can alleviate cadmium (Cd) toxicity in plants. However, the application of Se and GA3 as foliar spray to against Cd stress on soybean and its related mechanisms have been poorly explored. Herein, this experiment evaluated the effects of Se and GA3 alone and combined application on soybean rhizosphere microenvironment, Cd accumulation and growth of soybean seedlings. The results revealed that both Se and GA3 can effectively decrease the accumulation of Cd in soybean seedlings. Foliar application of Se, GA3 and their combination reduced Cd contents in soybean seedlings respectively by 21.70 %, 27.53 % and 45.07 % when compared with the control treatment, suggest a synergistic effect of Se and GA3 in decreasing Cd accumulation. Se and GA3 also significantly increased diversity and abundance of the metabolites in rhizosphere, which consequently played an important role in shaping rhizosphere bacteria community and improve rhizosphere soil physicochemical properties of Cd contaminated soil, as well as decreased the Cd available forms contents but enhance the immobilized form levels. Overall, this study affords a novel approach on mitigating Cd accumulation in soybean seedlings which is attributed to Se and GA3 regulated interplay among rhizosphere soil metabolites, bacteria community and cadmium speciation.
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Affiliation(s)
- Zhao Jiang
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Jianmin Wang
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Kaiqin Cao
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Yiyan Liu
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Baoxin Wang
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Xinyue Wang
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Yuying Wang
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Duo Jiang
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Bo Cao
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Ying Zhang
- School of Resources & Environment, Northeast Agricultural University, Harbin 150030, PR China.
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Mukherjee P, Dutta J, Roy M, Thakur TK, Mitra A. Plant growth-promoting rhizobacterial secondary metabolites in augmenting heavy metal(loid) phytoremediation: An integrated green in situ ecorestorative technology. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:55851-55894. [PMID: 39251536 DOI: 10.1007/s11356-024-34706-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 11/17/2022] [Indexed: 09/11/2024]
Abstract
In recent times, increased geogenic and human-centric activities have caused significant heavy metal(loid) (HM) contamination of soil, adversely impacting environmental, plant, and human health. Phytoremediation is an evolving, cost-effective, environment-friendly, in situ technology that employs indigenous/exotic plant species as natural purifiers to remove toxic HM(s) from deteriorated ambient soil. Interestingly, the plant's rhizomicrobiome is pivotal in promoting overall plant nutrition, health, and phytoremediation. Certain secondary metabolites produced by plant growth-promoting rhizobacteria (PGPR) directly participate in HM bioremediation through chelation/mobilization/sequestration/bioadsorption/bioaccumulation, thus altering metal(loid) bioavailability for their uptake, accumulation, and translocation by plants. Moreover, the metallotolerance of the PGPR and the host plant is another critical factor for the successful phytoremediation of metal(loid)-polluted soil. Among the phytotechniques available for HM remediation, phytoextraction/phytoaccumulation (HM mobilization, uptake, and accumulation within the different plant tissues) and phytosequestration/phytostabilization (HM immobilization within the soil) have gained momentum in recent years. Natural metal(loid)-hyperaccumulating plants have the potential to assimilate increased levels of metal(loid)s, and several such species have already been identified as potential candidates for HM phytoremediation. Furthermore, the development of transgenic rhizobacterial and/or plant strains with enhanced environmental adaptability and metal(loid) uptake ability using genetic engineering might open new avenues in PGPR-assisted phytoremediation technologies. With the use of the Geographic Information System (GIS) for identifying metal(loid)-impacted lands and an appropriate combination of normal/transgenic (hyper)accumulator plant(s) and rhizobacterial inoculant(s), it is possible to develop efficient integrated phytobial remediation strategies in boosting the clean-up process over vast regions of HM-contaminated sites and eventually restore ecosystem health.
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Affiliation(s)
- Pritam Mukherjee
- Department of Oceanography, Techno India University, West Bengal, EM 4/1 Sector V, Salt Lake, Kolkata, 700091, West Bengal, India.
| | - Joystu Dutta
- Department of Environmental Science, University Teaching Department, Sant Gahira Guru University, Ambikapur, 497001, Chhattisgarh, India
| | - Madhumita Roy
- Department of Microbiology, Bose Institute, P-1/12, CIT Road, Scheme VIIM, Kankurgachi, Kolkata, 700054, West Bengal, India
| | - Tarun Kumar Thakur
- Department of Environmental Science, Indira Gandhi National Tribal University, Amarkantak, 484886, Madhya Pradesh, India
| | - Abhijit Mitra
- Department of Marine Science, University of Calcutta, 35 B. C. Road, Kolkata, 700019, West Bengal, India
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Ehinmitan E, Losenge T, Mamati E, Ngumi V, Juma P, Siamalube B. BioSolutions for Green Agriculture: Unveiling the Diverse Roles of Plant Growth-Promoting Rhizobacteria. Int J Microbiol 2024; 2024:6181491. [PMID: 39238543 PMCID: PMC11377119 DOI: 10.1155/2024/6181491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Revised: 07/23/2024] [Accepted: 08/17/2024] [Indexed: 09/07/2024] Open
Abstract
The extensive use of chemical pesticides and fertilizers in conventional agriculture has raised significant environmental and health issues, including the emergence of resistant pests and pathogens. Plant growth-promoting rhizobacteria (PGPR) present a sustainable alternative, offering dual benefits as biofertilizers and biocontrol agents. This review delves into the mechanisms by which PGPR enhance plant growth, including nutrient solubilization, phytohormone production, and pathogen suppression. PGPR's commercial viability and application, particularly under abiotic stress conditions, are also examined. PGPR improves plant growth directly by enhancing nutrient uptake and producing growth-promoting substances and indirectly by inhibiting phytopathogens through mechanisms such as siderophore production and the secretion of lytic enzymes. Despite their potential, the commercialization of PGPR faces challenges, including strain specificity, formulation stability, and regulatory barriers. The review highlights the need for ongoing research to deepen our understanding of plant-microbe interactions and develop more robust PGPR formulations. Addressing these challenges will be crucial for integrating PGPR into mainstream agricultural practices and reducing reliance on synthetic agrochemicals. The successful adoption of PGPR could lead to more sustainable agricultural practices, promoting healthier crops and ecosystems.
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Affiliation(s)
- Emmanuel Ehinmitan
- Department of Molecular Biology and Biotechnology Pan African University Institute for Basic Sciences, Technology and Innovation, P.O. Box 62000-00200, Nairobi, Kenya
| | - Turoop Losenge
- Department of Horticulture Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi, Kenya
| | - Edward Mamati
- Department of Horticulture Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi, Kenya
| | - Victoria Ngumi
- Department of Botany Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi, Kenya
| | - Patrick Juma
- Department of Horticulture Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi, Kenya
| | - Beenzu Siamalube
- Department of Molecular Biology and Biotechnology Pan African University Institute for Basic Sciences, Technology and Innovation, P.O. Box 62000-00200, Nairobi, Kenya
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Nicotra D, Ghadamgahi F, Ghosh S, Anzalone A, Dimaria G, Mosca A, Massimino ME, Vetukuri RR, Catara V. Genomic insights and biocontrol potential of ten bacterial strains from the tomato core microbiome. FRONTIERS IN PLANT SCIENCE 2024; 15:1437947. [PMID: 39253574 PMCID: PMC11381245 DOI: 10.3389/fpls.2024.1437947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 08/05/2024] [Indexed: 09/11/2024]
Abstract
Introduction Despite their adverse environmental effects, modern agriculture relies heavily on agrochemicals to manage diseases and pests and enhance plant growth and productivity. Some of these functions could instead be fulfilled by endophytes from the plant microbiota, which have diverse activities beneficial for plant growth and health. Methods We therefore used a microbiome-guided top-down approach to select ten bacterial strains from different taxa in the core microbiome of tomato plants in the production chain for evaluation as potential bioinoculants. High-quality genomes for each strain were obtained using Oxford Nanopore long-read and Illumina short-read sequencing, enabling the dissection of their genetic makeup to identify phyto-beneficial traits. Results Bacterial strains included both taxa commonly used as biofertilizers and biocontrol agents (i.e. Pseudomonas and Bacillus) as well as the less studied genera Leclercia, Chryseobacterium, Glutamicibacter, and Paenarthorbacter. When inoculated in the tomato rhizosphere, these strains promoted plant growth and reduced the severity of Fusarium Crown and Root Rot and Bacterial Spot infections. Genome analysis yielded a comprehensive inventory of genes from each strain related to processes including colonization, biofertilization, phytohormones, and plant signaling. Traits directly relevant to fertilization including phosphate solubilization and acquisition of nitrogen and iron were also identified. Moreover, the strains carried several functional genes putatively involved in abiotic stress alleviation and biotic stress management, traits that indirectly foster plant health and growth. Discussion This study employs a top-down approach to identify new plant growth-promoting rhizobacteria (PGPRs), offering an alternative to the conventional bottom-up strategy. This method goes beyond the traditional screening of the strains and thus can expand the range of potential bioinoculants available for market application, paving the way to the use of new still underexplored genera.
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Affiliation(s)
- Daniele Nicotra
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
- Department of Biomedical and Biotechnological Sciences, University of Catania, Catania, Italy
| | - Farideh Ghadamgahi
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Samrat Ghosh
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Alice Anzalone
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Giulio Dimaria
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Alexandros Mosca
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Maria Elena Massimino
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Ramesh Raju Vetukuri
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Vittoria Catara
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
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11
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Tamura H. Bacterial Pesticides: Mechanism of Action, Possibility of Food Contamination, and Residue Analysis Using MS. JOURNAL OF PESTICIDE SCIENCE 2024; 49:135-147. [PMID: 39398503 PMCID: PMC11464265 DOI: 10.1584/jpestics.d24-006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Accepted: 06/02/2024] [Indexed: 10/15/2024]
Abstract
As Sustainable Development Goals (SDGs) and the realities of climate change become widely accepted around the world, the next-generation of integrated pest management will become even more important for establishing a sustainable food production system. To meet the current challenge of food security and climate change, biological control has been developed as one sustainable crop protection technology. However, most registered bacteria are ubiquitous soil-borne bacteria that are closely related to food poisoning and spoilage bacteria. Therefore, this review outlined (1) the mechanism of action of bacterial pesticides, (2) potential concerns about secondary contamination sources associated with past food contamination, and, as a prospective solution, focused on (3) principles and methods of bacterial identification, and (4) the possibility of identifying residual bacteria based on mass spectrometry.
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12
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Zheng JL, Li JR, Li AT, Li SH, Blanco SD, Chen SY, Lai YR, Shi MQ, Lin TC, Su JF, Lin YH. A Rapid Method for Screening Pathogen-Associated Molecular Pattern-Triggered Immunity-Intensifying Microbes. PLANTS (BASEL, SWITZERLAND) 2024; 13:2185. [PMID: 39204621 PMCID: PMC11359512 DOI: 10.3390/plants13162185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 07/26/2024] [Accepted: 07/30/2024] [Indexed: 09/04/2024]
Abstract
PAMP-triggered immunity (PTI) is the first layer of plant defense response that occurs on the plant plasma membrane. Recently, the application of a rhizobacterium, Bacillus amyloliquefaciens strain PMB05, has been demonstrated to enhance flg22Pst- or harpin-triggered PTI response such as callose deposition. This PTI intensification by PMB05 further contributes to plant disease resistance to different bacterial diseases. Under the demand for rapid and large-scale screening, it has become critical to establish a non-staining technology to identify microbial strains that can enhance PTI responses. Firstly, we confirmed that the expression of the GSL5 gene, which is required for callose synthesis, can be enhanced by PMB05 during PTI activation triggered by flg22 or PopW (a harpin from Ralstonia solanacearum). The promoter region of the GSL5 gene was further cloned and fused to the coding sequence of gfp. The constructed fragments were used to generate transgenic Arabidopsis plants through a plant transformation vector. The transgenic lines of AtGSL5-GFP were obtained. The analysis was performed by infiltrating flg22Pst or PopW in one homozygous line, and the results exhibited that the green fluorescent signals were observed until after 8 h. In addition, the PopW-induced fluorescent signal was significantly enhanced in the co-treatment with PMB05 at 4 h after inoculation. Furthermore, by using AtGSL5-GFP to analyze 13 Bacillus spp. strains, the regulation of PopW-induced fluorescent signal was observed. And, the regulation of these fluorescent signals was similar to that performed by callose staining. More importantly, the Bacillus strains that enhance PopW-induced fluorescent signals would be more effective in reducing the occurrence of bacterial wilt. Taken together, the technique by using AtGSL5-GFP would be a promising platform to screen plant immunity-intensifying microbes to control bacterial wilt.
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Affiliation(s)
- Jing-Lin Zheng
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
| | - Jia-Rong Li
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
| | - Ai-Ting Li
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
| | - Sin-Hua Li
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
| | - Sabrina Diana Blanco
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
- Department of Tropical Agriculture and International Cooperation, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan
| | - Si-Yan Chen
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
| | - Yun-Ru Lai
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
| | - Ming-Qiao Shi
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
| | - Tsung-Chun Lin
- Plant Pathology Division, Taiwan Agricultural Research Institute, Ministry of Agriculture, Taichung 413008, Taiwan; (T.-C.L.); (J.-F.S.)
| | - Jiunn-Feng Su
- Plant Pathology Division, Taiwan Agricultural Research Institute, Ministry of Agriculture, Taichung 413008, Taiwan; (T.-C.L.); (J.-F.S.)
| | - Yi-Hsien Lin
- Department of Plant Medicine, National Pingtung University of Science and Technology, Pingtung 912301, Taiwan; (J.-L.Z.); (J.-R.L.); (A.-T.L.); (S.-H.L.); (S.D.B.); (S.-Y.C.); (Y.-R.L.); (M.-Q.S.)
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Jannat M, Auyon ST, Tushar ASM, Tonny SH, Hasan MH, Shahi M, Singha UR, Sultana A, Akter S, Islam MR. Seed Priming with Rhizospheric Bacillus subtilis: A Smart Strategy for Reducing Fumonisin Contamination in Pre-Harvest Maize. Toxins (Basel) 2024; 16:337. [PMID: 39195747 PMCID: PMC11358949 DOI: 10.3390/toxins16080337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2024] [Revised: 07/03/2024] [Accepted: 07/05/2024] [Indexed: 08/29/2024] Open
Abstract
Maize, one of the most important cereal crops in Bangladesh, is severely contaminated by fumonisin, a carcinogenic secondary metabolite produced by Fusarium including Fusarium proliferatum. Biocontrol with Bacillus strains is an effective approach to controlling this F. proliferatum as Bacillus has proven antagonistic properties against this fungus. Therefore, the present study aimed to determine how native Bacillus strains can reduce fumonisin in maize cultivated in Bangladesh, where BDISO76MR (Bacillus subtilis) strains showed the highest efficacy both in vitro in detached cob and in planta under field conditions. The BDISO76MR strain could reduce the fumonisin concentration in detached cob at 98.52% over untreated control, by inhibiting the conidia germination and spore formation of F. proliferatum at 61.56% and 77.01%, respectively in vitro. On the other hand, seed treatment with formulated BDISO76MR showed higher efficacy with a reduction of 97.27% fumonisin contamination compared to the in planta cob inoculation (95.45%) over untreated control. This implies that Bacillus-based formulation might be a potential approach in mitigating fumonisin contamination in maize to ensure safe food and feed.
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Affiliation(s)
- Muhtarima Jannat
- Plant Bacteriology & Biotechnology Laboratory, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.J.); (A.S.M.T.); (S.H.T.); (M.H.H.); (M.S.)
| | - Shah Tasdika Auyon
- Department of Environmental Science, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh;
| | - Abu Sina Md. Tushar
- Plant Bacteriology & Biotechnology Laboratory, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.J.); (A.S.M.T.); (S.H.T.); (M.H.H.); (M.S.)
| | - Sadia Haque Tonny
- Plant Bacteriology & Biotechnology Laboratory, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.J.); (A.S.M.T.); (S.H.T.); (M.H.H.); (M.S.)
| | - Md. Hasibul Hasan
- Plant Bacteriology & Biotechnology Laboratory, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.J.); (A.S.M.T.); (S.H.T.); (M.H.H.); (M.S.)
| | - Mangal Shahi
- Plant Bacteriology & Biotechnology Laboratory, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.J.); (A.S.M.T.); (S.H.T.); (M.H.H.); (M.S.)
| | - Uday Rana Singha
- Department of Agricultural Extension, Khamarbari, Dhaka 1215, Bangladesh; (U.R.S.); (A.S.); (S.A.)
| | - Ayesha Sultana
- Department of Agricultural Extension, Khamarbari, Dhaka 1215, Bangladesh; (U.R.S.); (A.S.); (S.A.)
| | - Sabera Akter
- Department of Agricultural Extension, Khamarbari, Dhaka 1215, Bangladesh; (U.R.S.); (A.S.); (S.A.)
| | - Md. Rashidul Islam
- Plant Bacteriology & Biotechnology Laboratory, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (M.J.); (A.S.M.T.); (S.H.T.); (M.H.H.); (M.S.)
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14
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Jácome-Hernández A, Desgarennes D, Guevara R, Olivares-Romero JL, Favila ME. Antifungal capabilities of gut microbial communities of three dung beetle species (Scarabaeidae: Scarabaeinae). THE SCIENCE OF NATURE - NATURWISSENSCHAFTEN 2024; 111:36. [PMID: 38951264 DOI: 10.1007/s00114-024-01923-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 06/14/2024] [Accepted: 06/19/2024] [Indexed: 07/03/2024]
Abstract
Gut microbial communities are part of the regulatory array of various processes within their hosts, ranging from nutrition to pathogen control. Recent evidence shows that dung beetle's gut microbial communities release substances with antifungal activity. Because of the enormous diversity of gut microorganisms in dung beetles, there is a possibility of discovering novel compounds with antifungal properties. We tested the antifungal activity mediated by gut microbial communities of female dung beetles against nine phytopathogenic fungi strains (Colletotrichum asianum-339, C. asianum-340, C. asianum-1, C. kahawae-390, C. karstii-358, C. siamense-220, Fusarium oxysporum-ATCC338, Nectria pseudotrichia-232, Verticillium zaelandica-22). Our tests included the gut microbial communities of three species of dung beetles: Canthon cyanellus (roller beetle), Digitonthophagus gazella (burrower beetle), and Onthophagus batesi (burrower beetle), and we followed the dual confrontation protocol, i.e., we challenged each fungal strain with the microbial communities of each species of beetles in Petri dishes containing culture medium. Our results showed that gut microbial communities of the three dung beetle species exhibit antifungal activity against at least seven of the nine phytopathogenic fungal strains. The gut microbial communities of Onthophagus batesi significantly decreased the mycelial growth of the nine phytopathogenic fungi strains; the gut microbial communities of Canthon cyanellus and Digitonthophagus gazella significantly reduced the mycelial growth of seven strains. These results provide a basis for investigating novel antifungal substances within gut microbial communities of dung beetles.
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Affiliation(s)
| | - Damaris Desgarennes
- Red de Biodiversidad y Sistemática, Instituto de Ecología A.C., Xalapa, Mexico
| | - Roger Guevara
- Red de Biología Evolutiva, Instituto de Ecología A.C., Xalapa, Mexico
| | | | - Mario E Favila
- Red de Ecoetología, Instituto de Ecología A.C., Xalapa, Mexico.
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15
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Hussain A, Faizan S, Kumari R, Pandey E. Morphological and biochemical responses of Vicia faba (faba beans) grown on fly ash amended soil in the presence of Rhizobium leguminosarum and arbuscular mycorrhizal fungus. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:44361-44373. [PMID: 38949734 DOI: 10.1007/s11356-024-34154-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 06/24/2024] [Indexed: 07/02/2024]
Abstract
An experiment was conducted in the greenhouse to investigate the feasibility of Vicia faba grown on different fly ash concentrations (0-30%) and dual inoculation with Rhizobium and arbuscular mycorrhizal fungi (AMF). Sampling was done 45 days after sowing to analyse the plant growth parameters, photosynthetic attributes (total chlorophyll and carotenoids content), protein content, nitrogen (N) and phosphorus (P) content, defensive factors (antioxidant activity and proline content) and damage markers (lipid peroxidation, reactive oxygen species and cell viability). The results revealed that the application of fly ash (FA) alone did not result in any significant improvement in growth, biochemical and physiological parameters. However, dual inoculation showed a synergistic impact on legume growth, photosynthetic pigments, protein, proline, and cell viability. Rhizobium, AMF and 10% FA showed maximum enhancement in all attributes mentioned. 20% and 30% fly doses showed a reduction in growth, photosynthesis and antioxidants and caused oxidative stress via lipid peroxidation. The results showed that the synergistic or combined interactions between all three variables of the symbiotic relationship (Rhizobium-legume-AMF) boosted plant productivity.
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Affiliation(s)
- Alisha Hussain
- Environmental Physiology Laboratory, Department of Botany, Aligarh Muslim University, U.P, Aligarh, 202002, India
| | - Shahla Faizan
- Environmental Physiology Laboratory, Department of Botany, Aligarh Muslim University, U.P, Aligarh, 202002, India.
| | - Rinkee Kumari
- Environmental Physiology Laboratory, Department of Botany, Aligarh Muslim University, U.P, Aligarh, 202002, India
| | - Ekta Pandey
- Environmental Physiology Laboratory, Department of Botany, Aligarh Muslim University, U.P, Aligarh, 202002, India
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Shiva B, Srinivas P, Khulbe D, Rithesh L, Kishore Varma P, Tiwari RK, Lal MK, Kumar R. Isolation and characterization of native antagonistic rhizobacteria against Fusarium wilt of chilli to promote plant growth. PeerJ 2024; 12:e17578. [PMID: 38948222 PMCID: PMC11212620 DOI: 10.7717/peerj.17578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 05/24/2024] [Indexed: 07/02/2024] Open
Abstract
In the eastern coastal regions of Odisha, wilt caused by Fusarium oxysporum f. sp.capsici is an extremely damaging disease in chilli. This disease is very difficult to manage with chemical fungicides since it is soil-borne in nature. The natural rhizosphere soil of the chilli plant was used to isolate and test bacterial antagonists for their effectiveness and ability to promote plant growth. Out of the fifty-five isolates isolated from the rhizosphere of healthy chilli plants, five isolates, namely Iso 01, Iso 17, Iso 23, Iso 24, and Iso 32, showed their highly antagonistic activity against F. oxysporum f. sp. capsici under in vitro. In a dual culture, Iso 32 (73.3%) and Iso 24 (71.5%) caused the highest level of pathogen inhibition. In greenhouse trials, artificially inoculated chilli plants treated with Iso 32 (8.8%) and Iso 24 (10.2%) had decreased percent disease incidence (PDI), with percent disease reduction over control of 85.6% and 83.3%, respectively. Iso 32 and Iso 24 treated chilli seeds have shown higher seed vigor index of 973.7 and 948.8, respectively, as compared to untreated control 636.5. Furthermore, both the isolates significantly increased plant height as well as the fresh and dry weight of chilli plants under the rolled paper towel method. Morphological, biochemical, and molecular characterization identified Bacillus amyloliquefaciens (MH491049) as the key antagonist. This study demonstrates that rhizobacteria, specifically Iso 32 and Iso 24, can effectively protect chilli plants against Fusarium wilt while promoting overall plant development. These findings hold promise for sustainable and eco-friendly management of Fusarium wilt in chilli cultivation.
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Affiliation(s)
- Bhanothu Shiva
- Department of Plant Pathology, College of Agriculture, Odisha University of Agriculture and Technology, Bhubaneswar, Odisha, India
| | - Petikam Srinivas
- Central Horticultural Experiment Station, Indian Council of Agricultural Research-Indian Institute of Horticultural Research, Bhubaneswar, Odisha, India
| | - Deepa Khulbe
- Department of Plant Pathology, College of Agriculture, Odisha University of Agriculture and Technology, Bhubaneswar, Odisha, India
| | - Lellapalli Rithesh
- Department of Plant Pathology, Kerala Agricultural University, Thiruvanathapuram, Kerala, India
| | - Penumatsa Kishore Varma
- Plant Protection Division, Regional Agricultural Research Station, Acharya Ranga Agricultural University, Lam, Telangana, India
| | - Rahul Kumar Tiwari
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh, India
| | - Milan Kumar Lal
- Division of Plant Protection, ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh, India
| | - Ravinder Kumar
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, Delhi, India
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Mosca A, Dimaria G, Nicotra D, Modica F, Massimino ME, Catara AF, Scuderi G, Russo M, Catara V. Soil Microbial Communities in Lemon Orchards Affected by Citrus Mal Secco Disease. Genes (Basel) 2024; 15:824. [PMID: 39062603 PMCID: PMC11276235 DOI: 10.3390/genes15070824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 06/17/2024] [Accepted: 06/18/2024] [Indexed: 07/28/2024] Open
Abstract
Mal secco is a vascular disease of citrus caused by the mitosporic fungus Plenodomus tracheiphilus. Soil containing infected plant material constitutes an inoculum source for root infections. In this study, the soil bacterial and fungal communities of five lemon orchards located in Syracuse Province (Sicily, Italy) affected by mal secco were analyzed. Soil samples were collected under lemon tree canopies and subjected to total genomic DNA extraction. The fungal DNA was detected through qPCR in all orchards, with variable concentrations. Bacterial and fungal communities were profiled using 16S and ITS amplicon-based high-throughput sequencing, respectively. According to our results, the relative abundances of the most represented bacterial phyla (e.g., Proteobacteria, Actinobacteriota, Acidobacteriota) changed across the orchards, while in the fungal community, the phylum Ascomycota was dominant, with Basidiomycota and Mortierellomycota abundances fluctuating. On the whole, β diversity analysis showed significant variation in the composition of the soil microbial communities across the orchards. This result was confirmed by the analysis of the core community (taxa present at ≥ 75% of total samples), where putative beneficial bacteria resulted in significantly enriched fungus-infected soil samples, suggesting complex microbial interactions. Our findings shed light on the composition and diversity of the soil microbiome in lemon orchards with the occurrence of mal secco infections.
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Affiliation(s)
- Alexandros Mosca
- Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; (A.M.); (G.D.); (D.N.); (F.M.); (M.E.M.)
| | - Giulio Dimaria
- Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; (A.M.); (G.D.); (D.N.); (F.M.); (M.E.M.)
| | - Daniele Nicotra
- Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; (A.M.); (G.D.); (D.N.); (F.M.); (M.E.M.)
| | - Francesco Modica
- Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; (A.M.); (G.D.); (D.N.); (F.M.); (M.E.M.)
| | - Maria Elena Massimino
- Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; (A.M.); (G.D.); (D.N.); (F.M.); (M.E.M.)
| | | | - Giuseppe Scuderi
- Agrobiotech Soc. Coop., 95121 Catania, Italy; (A.F.C.); (G.S.); (M.R.)
| | - Marcella Russo
- Agrobiotech Soc. Coop., 95121 Catania, Italy; (A.F.C.); (G.S.); (M.R.)
| | - Vittoria Catara
- Department of Agriculture, Food and Environment, University of Catania, 95123 Catania, Italy; (A.M.); (G.D.); (D.N.); (F.M.); (M.E.M.)
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18
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Adan IH, Asudi GO, Niassy S, Jalloh AA, Mutua JM, Chidawanyika F, Khamis F, Khan Z, Subramanian S, Dubois T, Mutyambai DM. Comparative microbiome diversity in root-nodules of three Desmodium species used in push-pull cropping system. Front Microbiol 2024; 15:1395811. [PMID: 38966391 PMCID: PMC11222577 DOI: 10.3389/fmicb.2024.1395811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 05/28/2024] [Indexed: 07/06/2024] Open
Abstract
Background Desmodium species used as intercrops in push-pull cropping systems are known to repel insect-pests, suppress Striga species weeds, and shift soil microbiome. However, the mechanisms through which Desmodium species impact the soil microbiome, either through its root exudates, changes in soil nutrition, or shading microbes from its nodules into the rhizosphere, are less understood. Here, we investigated the diversity of root-nodule microbial communities of three Desmodium species- Desmodium uncinatum (SLD), Desmodium intortum (GLD), and Desmodium incanum (AID) which are currently used in smallholder maize push-pull technology (PPT). Methods Desmodium species root-nodule samples were collected from selected smallholder farms in western Kenya, and genomic DNA was extracted from the root-nodules. The amplicons underwent paired-end Illumina sequencing to assess bacterial and fungal populations. Results We found no significant differences in composition and relative abundance of bacterial and fungal species within the root-nodules of the three Desmodium species. While a more pronounced shift was observed for fungal community compositions compared to bacteria, no significant differences were observed in the general diversity (evenness and richness) of fungal and bacterial populations among the three Desmodium species. Similarly, beta diversity was not significantly different among the three Desmodium species. The root-nodule microbiome of the three Desmodium species was dominated by Bradyrhizobium and Fusarium species. Nevertheless, there were significant differences in the proportion of marker gene sequences responsible for energy and amino acid biosynthesis among the three Desmodium species, with higher sequence proportions observed in SLD. Conclusion There is no significant difference in the microbial community of the three Desmodium species used in PPT. However, root-nodule microbiome of SLD had significantly higher marker gene sequences responsible for energy and amino acid biosynthesis. Therefore, it is likely that the root-nodules of the three Desmodium species host similar microbiomes and influence soil health, consequently impacting plant growth and agroecosystem functioning.
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Affiliation(s)
- Isack H. Adan
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
- Department of Biochemistry, Microbiology, and Biotechnology, Kenyatta University, Nairobi, Kenya
| | - George Ochieng Asudi
- Department of Biochemistry, Microbiology, and Biotechnology, Kenyatta University, Nairobi, Kenya
| | - Saliou Niassy
- Inter-African Phytosanitary Council of the African Union, Yaoundé, Cameroon
| | - Abdul A. Jalloh
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
- Department of Zoology and Entomology, University of Pretoria, Pretoria, South Africa
| | | | - Frank Chidawanyika
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
- Department of Zoology and Entomology, University of Free State, Bloemfontein, South Africa
| | - Fathiya Khamis
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
| | - Zeyaur Khan
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
| | | | - Thomas Dubois
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
| | - Daniel Munyao Mutyambai
- International Centre of Insect Physiology and Ecology, Nairobi, Kenya
- Department of Life Science, South Eastern Kenya University, Kitui, Kenya
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19
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Sanchez Barrios A, Lundberg D, de Lorenzo L, Amos BK, Nair M, Hunt A, DeBolt S. Bacterial Spermosphere Inoculants Alter N. benthamiana-Plant Physiology and Host Bacterial Microbiome. PLANTS (BASEL, SWITZERLAND) 2024; 13:1677. [PMID: 38931109 PMCID: PMC11207711 DOI: 10.3390/plants13121677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 05/15/2024] [Accepted: 06/12/2024] [Indexed: 06/28/2024]
Abstract
In this study, we investigated the interplay between the spermosphere inoculum, host plant physiology, and endophytic compartment (EC) microbial community. Using 16S ribosomal RNA gene sequencing of root, stem, and leaf endophytic compartment communities, we established a baseline microbiome for Nicotiana sp. Phenotypic differences were observed due to the addition of some bacterial inoculants, correlated with endogenous auxin loads using transgenic plants expressing the auxin reporter pB-GFP::P87. When applied as spermosphere inoculants, select bacteria were found to create reproducible variation within the root EC microbiome and, more systematically, the host plant physiology. Our findings support the assertion that the spermosphere of plants is a zone that can influence the EC microbiome when applied in a greenhouse setting.
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Affiliation(s)
| | - Derek Lundberg
- Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tübingen, Germany;
| | - Laura de Lorenzo
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546, USA
| | - B Kirtley Amos
- Department of Horticulture, University of Kentucky, Lexington, KY 40546, USA; (A.S.B.)
| | - Meera Nair
- Department of Horticulture, University of Kentucky, Lexington, KY 40546, USA; (A.S.B.)
| | - Arthur Hunt
- Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY 40546, USA
| | - Seth DeBolt
- Department of Horticulture, University of Kentucky, Lexington, KY 40546, USA; (A.S.B.)
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20
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Ali MA, Ahmed T, Ibrahim E, Rizwan M, Chong KP, Yong JWH. A review on mechanisms and prospects of endophytic bacteria in biocontrol of plant pathogenic fungi and their plant growth-promoting activities. Heliyon 2024; 10:e31573. [PMID: 38841467 PMCID: PMC11152693 DOI: 10.1016/j.heliyon.2024.e31573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Revised: 05/08/2024] [Accepted: 05/19/2024] [Indexed: 06/07/2024] Open
Abstract
Endophytic bacteria, living inside plants, are competent plant colonizers, capable of enhancing immune responses in plants and establishing a symbiotic relationship with them. Endophytic bacteria are able to control phytopathogenic fungi while exhibiting plant growth-promoting activity. Here, we discussed the mechanisms of phytopathogenic fungi control and plant growth-promoting actions discovered in some major groups of beneficial endophytic bacteria such as Bacillus, Paenibacillus, and Pseudomonas. Most of the studied strains in these genera were isolated from the rhizosphere and soils, and a more extensive study of these endophytic bacteria is needed. It is essential to understand the underlying biocontrol and plant growth-promoting mechanisms and to develop an effective screening approach for selecting potential endophytic bacteria for various applications. We have suggested a screening strategy to identify potentially useful endophytic bacteria based on mechanistic phenomena. The discovery of endophytic bacteria with useful biocontrol and plant growth-promoting characteristics is essential for developing sustainable agriculture.
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Affiliation(s)
- Md. Arshad Ali
- Biotechnology Programme, Faculty of Science and Natural Resources, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu, 88400, Sabah, Malaysia
| | - Temoor Ahmed
- Xianghu Laboratory, Hangzhou, 311231, China
- Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
- MEU Research Unit, Middle East University, Amman, Jordan
| | - Ezzeldin Ibrahim
- Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China
- Department of Vegetable Diseases Research, Plant Pathology Research Institute, Agriculture Research Centre, Giza, Egypt
| | - Muhammad Rizwan
- Department of Environmental Sciences, Government College University Faisalabad, Faisalabad, 38000, Pakistan
| | - Khim Phin Chong
- Biotechnology Programme, Faculty of Science and Natural Resources, Universiti Malaysia Sabah, Jalan UMS, Kota Kinabalu, 88400, Sabah, Malaysia
| | - Jean Wan Hong Yong
- Department of Biosystems and Technology, Swedish University of Agricultural Sciences, 23456, Alnarp, Sweden
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21
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Ruan YN, Nong C, Jintrawet A, Fan H, Fu L, Zheng SJ, Li S, Wang ZY. A smooth vetch ( Vicia villosa var.) strain endogenous to the broad-spectrum antagonist Bacillus siamensis JSZ06 alleviates banana wilt disease. FRONTIERS IN PLANT SCIENCE 2024; 15:1410197. [PMID: 38978518 PMCID: PMC11229777 DOI: 10.3389/fpls.2024.1410197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Accepted: 05/13/2024] [Indexed: 07/10/2024]
Abstract
Fusarium wilt, caused by Fusarium oxysporum f. sp. cubense Tropical Race 4 (Foc TR4), poses a significant threat to banana production globally, thereby necessitating effective biocontrol methods to manage this devastating disease. This study investigates the potential of Bacillus siamensis strain JSZ06, isolated from smooth vetch, as a biocontrol agent against Foc TR4. To this end, we conducted a series of in vitro and in vivo experiments to evaluate the antifungal activity of strain JSZ06 and its crude extracts. Additionally, genomic analyses were performed to identify antibiotic synthesis genes, while metabolomic profiling was conducted to characterize bioactive compounds. The results demonstrated that strain JSZ06 exhibited strong inhibitory activity against Foc TR4, significantly reducing mycelial growth and spore germination. Moreover, scanning and transmission electron microscopy revealed substantial ultrastructural damage to Foc TR4 mycelia treated with JSZ06 extracts. Genomic analysis identified several antibiotic synthesis genes, and metabolomic profiling revealed numerous antifungal metabolites. Furthermore, in pot trials, the application of JSZ06 fermentation broth significantly enhanced banana plant growth and reduced disease severity, achieving biocontrol efficiencies of 76.71% and 79.25% for leaves and pseudostems, respectively. In conclusion, Bacillus siamensis JSZ06 is a promising biocontrol agent against Fusarium wilt in bananas, with its dual action of direct antifungal activity and plant growth promotion underscoring its potential for integrated disease management strategies.
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Affiliation(s)
- Yan-Nan Ruan
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- College of Agronomy and Life Sciences, Kunming Universities, Kunming, Yunnan, China
| | - Caihong Nong
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- College of Agronomy and Life Sciences, Kunming Universities, Kunming, Yunnan, China
| | | | - Huacai Fan
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Libo Fu
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Si-Jun Zheng
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Shu Li
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Zhi-Yuan Wang
- Institute of Agricultural Environment and Resources, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
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22
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Ahsan SM, Injamum-Ul-Hoque M, Das AK, Rahman MM, Mollah MMI, Paul NC, Choi HW. Plant-Entomopathogenic Fungi Interaction: Recent Progress and Future Prospects on Endophytism-Mediated Growth Promotion and Biocontrol. PLANTS (BASEL, SWITZERLAND) 2024; 13:1420. [PMID: 38794490 PMCID: PMC11124879 DOI: 10.3390/plants13101420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/17/2024] [Accepted: 05/18/2024] [Indexed: 05/26/2024]
Abstract
Entomopathogenic fungi, often acknowledged primarily for their insecticidal properties, fulfill diverse roles within ecosystems. These roles encompass endophytism, antagonism against plant diseases, promotion of the growth of plants, and inhabitation of the rhizosphere, occurring both naturally and upon artificial inoculation, as substantiated by a growing body of contemporary research. Numerous studies have highlighted the beneficial aspects of endophytic colonization. This review aims to systematically organize information concerning the direct (nutrient acquisition and production of phytohormones) and indirect (resistance induction, antibiotic and secondary metabolite production, siderophore production, and mitigation of abiotic and biotic stresses) implications of endophytic colonization. Furthermore, a thorough discussion of these mechanisms is provided. Several challenges, including isolation complexities, classification of novel strains, and the impact of terrestrial location, vegetation type, and anthropogenic reluctance to use fungal entomopathogens, have been recognized as hurdles. However, recent advancements in biotechnology within microbial research hold promising solutions to many of these challenges. Ultimately, the current constraints delineate potential future avenues for leveraging endophytic fungal entomopathogens as dual microbial control agents.
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Affiliation(s)
- S. M. Ahsan
- Department of Plant Medicals, Andong National University, Andong 36729, Republic of Korea;
| | - Md. Injamum-Ul-Hoque
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea; (M.I.-U.-H.); (A.K.D.)
| | - Ashim Kumar Das
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea; (M.I.-U.-H.); (A.K.D.)
| | - Md. Mezanur Rahman
- Department of Plant and Soil Science, Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX 79409, USA;
| | - Md. Mahi Imam Mollah
- Department of Entomology, Patuakhali Science and Technology University, Dumki, Patuakhali 8602, Bangladesh;
| | - Narayan Chandra Paul
- Kumho Life Science Laboratory, Chonnam National University, Gwangju 61186, Republic of Korea;
| | - Hyong Woo Choi
- Department of Plant Medicals, Andong National University, Andong 36729, Republic of Korea;
- Institute of Cannabis Biotechnology, Andong National University, Andong 36729, Republic of Korea
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23
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Kačániová M, Vukovic NL, Čmiková N, Bianchi A, Garzoli S, Ben Saad R, Ben Hsouna A, Elizondo-Luévano JH, Said-Al Ahl HAH, Hikal WM, Vukic MD. Biological Activity and Phytochemical Characteristics of Star Anise ( Illicium verum) Essential Oil and Its Anti- Salmonella Activity on Sous Vide Pumpkin Model. Foods 2024; 13:1505. [PMID: 38790803 PMCID: PMC11121629 DOI: 10.3390/foods13101505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 04/27/2024] [Accepted: 05/10/2024] [Indexed: 05/26/2024] Open
Abstract
Illicium verum, commonly known as star anise, represents one of the notable botanical species and is recognized for its rich reservoir of diverse bioactive compounds. Beyond its culinary application as a spice, this plant has been extensively utilized in traditional medicine. Given the contemporary emphasis on incorporating natural resources into food production, particularly essential oils, to enhance sensory attributes and extend shelf life, our study seeks to elucidate the chemical composition and evaluate the antibacterial (in vitro, in situ) and insecticidal properties of Illicium verum essential oil (IVEO). Also, microbiological analyses of pumpkin sous vide treated with IVEO after inoculation of Salmonella enterica were evaluated after 1 and 7 days of study. GC/MS analysis revealed a significantly high amount of (E)-anethole (88.4%) in the investigated EO. The disc diffusion method shows that the antibacterial activity of the IVEO ranged from 5.33 (Streptococcus constellatus) to 10.33 mm (Citrobacter freundii). The lowest minimal inhibition concentration was found against E. coli and the minimum biofilm inhibition concertation was found against S. enterica. In the vapor phase, the best antimicrobial activity was found against E. coli in the pears model and against S. sonei in the beetroot model. The application of the sous vide method in combination with IVEO application decreased the number of microbial counts and eliminated the growth of S. enterica. The most isolated microbiota identified from the sous vide pumpkin were Bacillus amyloliquefaciens, B. cereus, B. licheniformis, and Ralstonia picketii. Modifications to the protein composition of biofilm-forming bacteria S. enterica were suggested by the MALDI TOF MS instigations. The IVEO showed insecticidal potential against Harmonia axyridis. Thanks to the properties of IVEO, our results suggest it can be used in the food industry as a natural supplement to extend the shelf life of foods and as a natural insecticide.
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Affiliation(s)
- Miroslava Kačániová
- Institute of Horticulture, Faculty of Horticulture and Landscape Engineering, Slovak University of Agriculture, Tr. A. Hlinku 2, 94976 Nitra, Slovakia; (N.Č.); (M.D.V.)
- School of Medical & Health Sciences, University of Economics and Human Sciences in Warsaw, Okopowa 59, 01 043 Warszawa, Poland
| | - Nenad L. Vukovic
- Department of Chemistry, Faculty of Science, University of Kragujevac, 34000 Kragujevac, Serbia;
| | - Natália Čmiková
- Institute of Horticulture, Faculty of Horticulture and Landscape Engineering, Slovak University of Agriculture, Tr. A. Hlinku 2, 94976 Nitra, Slovakia; (N.Č.); (M.D.V.)
| | - Alessandro Bianchi
- Department of Agriculture, Food and Environment, University of Pisa, Via del Borghetto 80, 56124 Pisa, Italy;
| | - Stefania Garzoli
- Department of Chemistry and Technologies of Drug, Sapienza University, P. le Aldo Moro, 5, 00185 Rome, Italy;
| | - Rania Ben Saad
- Laboratory of Biotechnology and Plant Improvement, Centre of Biotechnology of Sfax, B.P “1177”, Sfax 3018, Tunisia; (R.B.S.); (A.B.H.)
| | - Anis Ben Hsouna
- Laboratory of Biotechnology and Plant Improvement, Centre of Biotechnology of Sfax, B.P “1177”, Sfax 3018, Tunisia; (R.B.S.); (A.B.H.)
- Department of Environmental Sciences and Nutrition, Higher Institute of Applied Sciences and Technology of Mahdia, University of Monastir, Monastir 5000, Tunisia
| | - Joel Horacio Elizondo-Luévano
- Faculty of Agronomy, Universidad Autónoma de Nuevo León (UANL), Av. Francisco Villa S/N, Col. Ex Hacienda el Canadá, General Escobedo 66050, Nuevo León, Mexico;
| | - Hussein A. H. Said-Al Ahl
- Medicinal and Aromatic Plants Research Department, Pharmaceutical and Drug Industries Research Institute, National Research Centre (NRC), 33 El-Behouth St. Dokki, Giza 12622, Egypt;
| | - Wafaa M. Hikal
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk 71491, Saudi Arabia;
| | - Milena D. Vukic
- Institute of Horticulture, Faculty of Horticulture and Landscape Engineering, Slovak University of Agriculture, Tr. A. Hlinku 2, 94976 Nitra, Slovakia; (N.Č.); (M.D.V.)
- Department of Chemistry, Faculty of Science, University of Kragujevac, 34000 Kragujevac, Serbia;
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24
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Zhi Q, Tan G, Wu S, Ma Q, Fan J, Chen Y, Li J, Hu Z, Xiao Y, Li L, Liu Z, Yang Z, Yang Z, Meng D, Yin H, Tang Q, Liu T. What role do biocontrol agents with Mg 2+ play in the fate of antibiotic resistome and pathogenic bacteria in the phyllosphere? mSystems 2024; 9:e0112623. [PMID: 38506511 PMCID: PMC11019836 DOI: 10.1128/msystems.01126-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 01/10/2024] [Indexed: 03/21/2024] Open
Abstract
The contamination of the plant phyllosphere with antibiotics and antibiotic resistance genes (ARGs), caused by application of antibiotics, is a significant environmental issue in agricultural management. Alternatively, biocontrol agents are environmentally friendly and have attracted a lot of interest. However, the influence of biocontrol agents on the phyllosphere resistome remains unknown. In this study, we applied biocontrol agents to control the wildfire disease in the Solanaceae crops and investigated their effects on the resistome and the pathogen in the phyllosphere by using metagenomics. A total of 250 ARGs were detected from 15 samples, which showed a variation in distribution across treatments of biocontrol agents (BA), BA with Mg2+ (T1), BA with Mn2+ (T2), and kasugamycin (T3) and nontreated (CK). The results showed that the abundance of ARGs under the treatment of BA-Mg2+ was lower than that in the CK group. The abundance of cphA3 (carbapenem resistance), PME-1 (carbapenem resistance), tcr3 (tetracycline antibiotic resistance), and AAC (3)-VIIIa (aminoglycoside antibiotic resistance) in BA-Mg2+ was significantly higher than that in BA-Mn2+ (P < 0.05). The abundance of cphA3, PME_1, and tcr3 was significantly negatively related to the abundance of the phyllosphere pathogen Pseudomonas syringae (P < 0.05). We also found that the upstream and downstream regions of cphA3 were relatively conserved, in which rpl, rpm, and rps gene families were identified in most sequences (92%). The Ka/Ks of cphA3 was 0 in all observed sequences, indicating that under the action of purifying selection, nonsynonymous substitutions are often gradually eliminated in the population. Overall, this study clarifies the effect of biocontrol agents with Mg2+ on the distribution of the phyllosphere resistome and provides evolutionary insights into the biocontrol process. IMPORTANCE Our study applied metagenomics analysis to examine the impact of biocontrol agents (BAs) on the phyllosphere resistome and the pathogen. Irregular use of antibiotics has led to the escalating dissemination of antibiotic resistance genes (ARGs) in the environment. The majority of BA research has focused on the effect of monospecies on the plant disease control process, the role of the compound BA with nutrition elements in the phyllosphere disease, and the resistome is still unknown. We believe BAs are eco-friendly alternatives for antibiotics to combat the transfer of ARGs. Our results revealed that BA-Mg2+ had a lower relative abundance of ARGs compared to the CK group, and the phyllosphere pathogen Pseudomonas syringae was negatively related to three specific ARGs, cphA3, PME-1, and tcr3. These three genes also present different Ka/Ks. We believe that the identification of the distribution and evolution modes of ARGs further elucidates the ecological role and facilitates the development of BAs, which will attract general interest in this field.
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Affiliation(s)
- Qiqi Zhi
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, China
| | - Ge Tan
- China Tobacco Hunan Industrial Co., Ltd., Changsha, China
| | - Shaolong Wu
- Tobacco Research Institute of Hunan Province, Changsha, China
| | - Qianqian Ma
- College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Jianqiang Fan
- Technology Center, China Tobacco Fujian Industrial Co., Ltd, Xiamen, Fujian, China
| | - Yiqiang Chen
- Technology Center, China Tobacco Fujian Industrial Co., Ltd, Xiamen, Fujian, China
| | - Jingjing Li
- Technology Center, China Tobacco Fujian Industrial Co., Ltd, Xiamen, Fujian, China
| | - Zhengrong Hu
- Tobacco Research Institute of Hunan Province, Changsha, China
| | - Yansong Xiao
- Chenzhou Tobacco Company of Hunan Province, Chenzhou, China
| | - Liangzhi Li
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, China
| | - Zhenghua Liu
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, China
| | - Zhaoyue Yang
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, China
| | - Zhendong Yang
- School of Architecture and Civil Engineering, Chengdu University, Chengdu, Sichuan, China
| | - Delong Meng
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, China
| | - Huaqun Yin
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy, Ministry of Education, Changsha, China
| | - Qianjun Tang
- College of Plant Protection, Hunan Agricultural University, Changsha, China
| | - Tianbo Liu
- Tobacco Research Institute of Hunan Province, Changsha, China
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25
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Zhou Y, Yang L, Xu S, Li S, Zeng L, Shang H, Li X, Fan H, Zheng SJ. Biological control of the native endophytic fungus Pochonia chlamydosporia from the root nodule of Dolichos lablab on Fusarium wilt of banana TR4. Front Microbiol 2024; 15:1371336. [PMID: 38601934 PMCID: PMC11004353 DOI: 10.3389/fmicb.2024.1371336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 03/08/2024] [Indexed: 04/12/2024] Open
Abstract
Fusarium wilt of banana caused by Fusarium oxysporum f. sp. cubense, Tropical Race 4 (TR4) is a soil-borne disease, and it is devastating. At present, the biological control using antagonistic microorganisms to mitigate TR4 is one of the best strategies as a safe and green way. Yunnan has abundant and diverse microbial resources. Using the dual-culture method, the antagonistic endophytic fungi against TR4 were isolated and screened from the root nodule of Dolichos lablab. The effect of the highest antagonistic activity strain on the morphology of the TR4 mycelium was observed using the scanning electron microscope. According to morphological characteristics and sequence analysis, the strain was identified. The biocontrol effect and plant growth promotion were investigated by greenhouse pot experiment. Using the confocal laser scanning microscope and the real-time fluorescence quantitative PCR, the dynamics of TR4 infestation and the TR4 content in banana plant roots and corms would also be detected. In this study, 18 native endophytic fungi were isolated from a root nodule sample of Dolichos lablab in the mulch for banana fields in Yuxi, Yunnan Province, China. The YNF2217 strain showed a high antagonistic activity against TR4 in plate confrontation experiments, and the inhibition rate of YNF2217 is 77.63%. After TR4 culture with YNF2217 for 7 days in plate confrontation experiments, the morphology of the TR4 mycelium appeared deformed and swollen when observed under a scanning electron microscope. According to morphological characteristics and sequence analysis, the strain YNF2217 was identified as Pochonia chlamydosporia. In the greenhouse pot experiment, the biocontrol effect of YNF2217 fermentation solution on TR4 was 70.97% and 96.87% on banana plant leaves and corms, respectively. Furthermore, YNF2217 significantly promoted the growth of banana plants, such as plant height, leaf length, leaf width, leaf number, pseudostem girth, and both the aboveground and underground fresh weight. Observations of TR4 infestation dynamics in banana roots and corms, along with real-time fluorescence quantitative PCR, verified that YNF2217 inoculation could significantly reduce the TR4 content. Therefore, YNF2217 as P. chlamydosporia, which was found first time in China and reported here, is expected to be an important new fungal resource for the green control of Fusarium wilt of banana in the future.
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Affiliation(s)
- Yunfan Zhou
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- Resource Plant Research Institute, Yunnan University, Kunming, Yunnan, China
| | - Limei Yang
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Shengtao Xu
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Shu Li
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Li Zeng
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Hui Shang
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Xundong Li
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Huacai Fan
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
| | - Si-Jun Zheng
- Yunnan Key Laboratory of Green Prevention and Control of Agricultural Transboundary Pests, The Ministry of Agriculture and Rural Affairs International Joint Research Center for Agriculture, The Ministry of Agriculture and Rural Affairs Key Laboratory for Prevention and Control of Biological Invasions, Agricultural Environment and Resource Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, China
- Bioversity International, Kunming, Yunnan, China
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26
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Islam MM, Mandal S. Unveiling growth-promoting attributes of peanut root endophyte Micromonospora sp. Arch Microbiol 2024; 206:182. [PMID: 38502250 DOI: 10.1007/s00203-024-03886-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/30/2024] [Accepted: 02/05/2024] [Indexed: 03/21/2024]
Abstract
In this study, 20 endophytic actinobacteria were isolated from different parts of peanut plants growing in cropland with low and high salt in West Bengal, India. The endophytes underwent a rigorous morphological, biochemical, and genetic screening process to evaluate their effectiveness in enhancing plant growth. About 20% of these isolates were identified as potential plant growth-promoting endophytic actinobacteria, which showed high 16S rRNA gene sequence similarity (up to 99-100%) with different species of Micromonospora. Among these isolates, Micromonospora sp. ASENR15 produced the highest levels of indole acetic acid (IAA) and gibberellic acid (GA), while Micromonospora sp. ASENL2, Micromonospora sp. ANENR4, and Micromonospora sp. ASENR12 produced the highest level of siderophore. Among these leaf and root endophytic Micromonospora, strain ANENR4 was tested for its plant growth-promoting attributes. ANENR4 can be transmitted into the roots of a healthy peanut plant, enhances growth, and colonize the roots in abundance, suggesting the potential agricultural significance of the strain. Moreover, the study is the first report of endophytic Micromonospora in peanuts with PGP effects. The outcomes of this study open avenues for further research on harnessing the benefits of this endophytic Micromonospora for optimizing plant growth in agriculture.
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Affiliation(s)
- Md Majharul Islam
- Laboratory of Molecular Bacteriology, Department of Microbiology, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Sukhendu Mandal
- Laboratory of Molecular Bacteriology, Department of Microbiology, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
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Ge AH, Li QY, Liu HW, Zhang ZK, Lu Y, Liang ZH, Singh BK, Han LL, Xiang JF, Xiao JL, Liu SY, Zhang LM. Streptomyces-triggered coordination between rhizosphere microbiomes and plant transcriptome enables watermelon Fusarium wilt resistance. Microb Biotechnol 2024; 17:e14435. [PMID: 38465781 PMCID: PMC10926178 DOI: 10.1111/1751-7915.14435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 02/16/2024] [Accepted: 02/18/2024] [Indexed: 03/12/2024] Open
Abstract
The use of microbial inoculant is a promising strategy to improve plant health, but their efficiency often faces challenges due to difficulties in successful microbial colonization in soil environments. To this end, the application of biostimulation products derived from microbes is expected to resolve these barriers via direct interactions with plants or soil pathogens. However, their effectiveness and mechanisms for promoting plant growth and disease resistance remain elusive. In this study, we showed that root irrigation with the extracts of Streptomyces ahygroscopicus strain 769 (S769) solid fermentation products significantly reduced watermelon Fusarium wilt disease incidence by 30% and increased the plant biomass by 150% at a fruiting stage in a continuous cropping field. S769 treatment led to substantial changes in both bacterial and fungal community compositions, and induced a highly interconnected microbial association network in the rhizosphere. The root transcriptome analysis further suggested that S769 treatment significantly improved the expression of the MAPK signalling pathway, plant hormone signal transduction and plant-pathogen interactions, particular those genes related to PR-1 and ethylene, as well as genes associated with auxin production and reception. Together, our study provides mechanistic and empirical evidences for the biostimulation products benefiting plant health through coordinating plant and rhizosphere microbiome interaction.
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Affiliation(s)
- An-Hui Ge
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Qi-Yun Li
- Key Laboratory of Integrated Pest Management on Crops in Northeast Ministry of Agriculture, Jilin Key Laboratory of Agricultural Microbiology, Institute of Plant Protection, Jilin Academy of Agricultural Sciences, Changchun, China
- Jilin Agricultural Science and Technology University, Jilin, China
| | - Hong-Wei Liu
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales, Australia
- Global Centre for Land-Based Innovation, Western Sydney University, Penrith, New South Wales, Australia
| | - Zheng-Kun Zhang
- Key Laboratory of Integrated Pest Management on Crops in Northeast Ministry of Agriculture, Jilin Key Laboratory of Agricultural Microbiology, Institute of Plant Protection, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Yang Lu
- Key Laboratory of Integrated Pest Management on Crops in Northeast Ministry of Agriculture, Jilin Key Laboratory of Agricultural Microbiology, Institute of Plant Protection, Jilin Academy of Agricultural Sciences, Changchun, China
| | - Zhi-Huai Liang
- Hunan Agricultural Biotechnology Research Institute, Changsha, China
| | - Brajesh K Singh
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, New South Wales, Australia
- Global Centre for Land-Based Innovation, Western Sydney University, Penrith, New South Wales, Australia
| | - Li-Li Han
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
| | - Ji-Fang Xiang
- Hunan Agricultural Biotechnology Research Institute, Changsha, China
| | - Ji-Ling Xiao
- Hunan Agricultural Biotechnology Research Institute, Changsha, China
| | - Si-Yi Liu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
| | - Li-Mei Zhang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
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Liao K, Li Q, Li JZ, Wei HL. Pseudomonas hefeiensis sp. nov., isolated from the rhizosphere of multiple cash crops in China. Int J Syst Evol Microbiol 2024; 74:006303. [PMID: 38536209 PMCID: PMC10995727 DOI: 10.1099/ijsem.0.006303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 03/08/2024] [Indexed: 04/07/2024] Open
Abstract
Three bacterial strains, FP250T, FP821, and FP53, were isolated from the rhizosphere soil of oilseed rape, licorice, and habanero pepper in Anhui Province, Xinjiang Uygur Autonomous Region, and Jiangsu Province, PR China, respectively. All strains were shown to grow at 4-37 °C and pH 6.0-9.0, and in the presence of 0-4.0 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences or housekeeping genes (16S rRNA, gyrB, rpoB, and rpoD) and phylogenomic analysis showed that strains FP250T, FP821, and FP53 belong to the genus Pseudomonas, and are closely related to Pseudomonas kilonensis DSM 13647T, Pseudomonas brassicacearum JCM 11938T, Pseudomonas viciae 11K1T, and Pseudomonas thivervalensis DSM 13194T. The DNA G+C content of strain FP205T was 59.8 mol%. The average nucleotide identity and digital DNA-DNA hybridization values of strain FP205T with the most closely related strain were 93.2 % and 51.4 %, respectively, which is well below the threshold for species differentiation. Strain FP205T contained summed feature 3 (C16 : 1 ω6c and/or C16 : 1 ω7c), summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c) as major fatty acids, and diphosphatidylglycerol along with phosphatidylethanolamine and aminophospholipid as major polar lipids. The predominant isoprenoid quinone was ubiquinone-9. Based on these phenotypic, phylogenetic, and chemotaxonomic results, strain FP205T represents a novel species of the genus Pseudomonas, for which the name Pseudomonas hefeiensis sp. nov. is proposed. The type strain is FP205T (=ACCC 62447T=JCM 35687T).
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Affiliation(s)
- Kaiji Liao
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
- College of Life Science and Technology of Huazhong Agricultural University, Wuhan 430070, PR China
| | - Qiang Li
- Shandong Tudacu Fertilizer Co. Ltd, Jining 272000, PR China
| | - Jun-Zhou Li
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
| | - Hai-Lei Wei
- State Key Laboratory of Efficient Utilization of Arid and Semi-arid Arable Land in Northern China, Key Laboratory of Microbial Resources Collection and Preservation, Ministry of Agriculture and Rural Affairs, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, PR China
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He P, Hu S, Zhang Y, Xiang Z, Zhang Z, Wang D, Chen S. A new ROS response factor YvmB protects Bacillus licheniformis against oxidative stress under adverse environment. Appl Environ Microbiol 2024; 90:e0146823. [PMID: 38193675 PMCID: PMC10880666 DOI: 10.1128/aem.01468-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 11/30/2023] [Indexed: 01/10/2024] Open
Abstract
Bacillus spp., a class of aerobic bacteria, is widely used as a biocontrol microbe in the world. However, the reactive oxygen species (ROS) will accumulate once the aerobic bacteria are exposed to environmental stresses, which can decrease cell activity or lead to cell death. Hydroxyl radical (·OH), the strongest oxide in the ROS, can damage DNA directly, which is generated through Fenton Reaction by H2O2 and free iron. Here, we proved that the synthesis of pulcherriminic acid (PA), an iron chelator produced by Bacillus spp., could reduce DNA damage to protect cells from oxidative stress by sequestrating excess free iron, which enhanced the cell survival rates in stressful conditions (salt, antibiotic, and high temperature). It was worth noting that the synthesis of PA was found to be increased under oxidative stress. Thus, we demonstrated that the YvmB, a direct negative regulator of PA synthesis cluster yvmC-cypX, could be oxidized at cysteine residue (C57) to form a dimer losing the DNA-binding activity, which led to an improvement in PA production. Collectively, our findings highlight that YvmB senses ROS to regulate PA synthesis is one of the evolved proactive defense systems in bacteria against adverse environments.IMPORTANCEUnder environment stress, the electron transfer chain will be perturbed resulting in the accumulation of H2O2 and rapidly transform to ·OH through Fenton Reaction. How do bacteria deal with oxidative stress? At present, several iron chelators have been reported to decrease the ·OH generation by sequestrating iron, while how bacteria control the synthesis of iron chelators to resist oxidative stress is still unclear. Our study found that the synthesis of iron chelator PA is induced by reactive oxygen species (ROS), which means that the synthesis of iron chelator is a proactive defense mechanism against environment stress. Importantly, YvmB is the first response factor found to protect cells by reducing the ROS generation, which present a new perspective in antioxidation studies.
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Affiliation(s)
- Penghui He
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan, China
| | - Shiying Hu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan, China
| | - Yongjia Zhang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan, China
| | - Zhengwei Xiang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan, China
| | - Zheng Zhang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan, China
| | - Dong Wang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan, China
| | - Shouwen Chen
- State Key Laboratory of Biocatalysis and Enzyme Engineering, Environmental Microbial Technology Center of Hubei Province, College of Life Sciences, Hubei University, Wuhan, China
- Key Laboratory of Green Chemical Technology of Fujian Province University, College of Ecological and Resource Engineering, Wuyi University, Wuyishan, China
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Diabankana RGC, Frolov M, Islamov B, Shulga E, Filimonova MN, Afordoanyi DM, Validov S. Identification and Aggressiveness of Fusarium Species Associated with Onion Bulb ( Allium cepa L.) during Storage. J Fungi (Basel) 2024; 10:161. [PMID: 38392833 PMCID: PMC10890437 DOI: 10.3390/jof10020161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 02/16/2024] [Accepted: 02/17/2024] [Indexed: 02/24/2024] Open
Abstract
Plant pathogens present a major challenge to crop production, leading to decreased yield and quality during growth and storage. During long-term storage, healthy onions can develop diseases from latent pathogen infections. This poses a challenge for onion growers because infected bulbs without visible symptoms can lead to significant crop losses during the growing season. In this study, we aimed to isolate and identify Fusarium species from yellow onion bulbs (Allium cepa L.) that developed disease symptoms during storage. The aggressiveness of these strains against onion bulbs and seedlings was also evaluated. The isolated strains were further subjected to morphological and molecular differentiation. The results revealed that all 16 isolated strains belonged to the Fusarium complex species incarnatum-equiseti and Fusarium fujikuroi, namely, F. proliferatum (98%), F. oxysporum (1%), and Fusarium sp. (1%). Koch's postulate analysis of isolated strains revealed varying aggressiveness on onion bulbs and plants depending on fungal species. Disease symptoms developed more slowly on plants than on onion bulb plants according to Koch's postulates. Moreover, the results revealed that Fusarium strains that can infect onion plants were less pathogenic to onion bulbs and vice versa. In addition, three isolates were found to be non-pathogenic to onions. Furthermore, the in vitro control of Fusarium species through Bacillus velezensis KS04-AU and Streptomyces albidoflavus MGMM6 showed high potential for controlling the growth of these pathogenic fungi. These results may contribute to the development of environmentally friendly approaches for controlling onion spoilage caused by pathogens during storage.
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Affiliation(s)
- Roderic Gilles Claret Diabankana
- Laboratory of Molecular Genetics and Microbiology Methods, Kazan Scientific Center of the Russian Academy of Sciences, 420111 Kazan, Russia
| | - Mikhail Frolov
- Laboratory of Molecular Genetics and Microbiology Methods, Kazan Scientific Center of the Russian Academy of Sciences, 420111 Kazan, Russia
| | - Bakhtiyar Islamov
- Laboratory of Molecular Genetics and Microbiology Methods, Kazan Scientific Center of the Russian Academy of Sciences, 420111 Kazan, Russia
| | - Elena Shulga
- Laboratory of Molecular Genetics and Microbiology Methods, Kazan Scientific Center of the Russian Academy of Sciences, 420111 Kazan, Russia
| | - Maria Nikolaevna Filimonova
- Academic and Research Centre, Institute of Fundamental Medicine and Biology, Kazan Federal University, 420008 Kazan, Russia
| | - Daniel Mawuena Afordoanyi
- Laboratory of Molecular Genetics and Microbiology Methods, Kazan Scientific Center of the Russian Academy of Sciences, 420111 Kazan, Russia
| | - Shamil Validov
- Laboratory of Molecular Genetics and Microbiology Methods, Kazan Scientific Center of the Russian Academy of Sciences, 420111 Kazan, Russia
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31
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Yang P, Zeng Q, Jiang W, Wang L, Zhang J, Wang Z, Wang Q, Li Y. Genome Sequencing and Characterization of Bacillus velezensis N23 as Biocontrol Agent against Plant Pathogens. Microorganisms 2024; 12:294. [PMID: 38399699 PMCID: PMC10892835 DOI: 10.3390/microorganisms12020294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 01/24/2024] [Accepted: 01/26/2024] [Indexed: 02/25/2024] Open
Abstract
The overuse of chemical fungicides against fungal pathogens adversely affects soil and plant health, resulting in environmental problems and food safety. Therefore, biocontrol is considered as an environmentally friendly and cost-effective green technique in environmental protection and agricultural production. We obtained a bacterial strain N23 from a contaminated plate which showed significant inhibition to anthracnose. The strain N23 was identified as Bacillus velezensis based on 16S rRNA gene, gyrA gene, and whole-genome sequence. The bacterium N23 was able to suppress the mycelial growth of numerous plant pathogenic fungi on solid media. Tomato seeds treated with strain N23 showed significantly higher germination levels than untreated ones. Moreover, strain N23 effectively reduced the lesion area of pepper anthracnose disease in planta. The gene clusters responsible for antifungal metabolites (fengycin, surfactin, and iturin) were identified in the genome sequence of N23 based on genome mining and PCR. Furthermore, methanol extracts of the bacterial culture caused significant inhibition in growth of the fungal Colletotrichum sp. and Botrytis cinerea. These findings suggested that B. velezensis N23 could be a potential biocontrol agent in agricultural production and a source of antimicrobial compounds for further exploitation.
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Affiliation(s)
| | | | | | | | | | | | | | - Yan Li
- Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing 100193, China; (P.Y.); (Q.Z.); (W.J.); (L.W.); (J.Z.); (Z.W.); (Q.W.)
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Iloabuchi K, Spiteller D. Bacillus sp. G2112 Detoxifies Phenazine-1-carboxylic Acid by N5 Glucosylation. Molecules 2024; 29:589. [PMID: 38338334 PMCID: PMC10856480 DOI: 10.3390/molecules29030589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 02/12/2024] Open
Abstract
Microbial symbionts of plants constitute promising sources of biocontrol organisms to fight plant pathogens. Bacillus sp. G2112 and Pseudomonas sp. G124 isolated from cucumber (Cucumis sativus) leaves inhibited the plant pathogens Erwinia and Fusarium. When Bacillus sp. G2112 and Pseudomonas sp. G124 were co-cultivated, a red halo appeared around Bacillus sp. G2112 colonies. Metabolite profiling using liquid chromatography coupled to UV and mass spectrometry revealed that the antibiotic phenazine-1-carboxylic acid (PCA) released by Pseudomonas sp. G124 was transformed by Bacillus sp. G2112 to red pigments. In the presence of PCA (>40 µg/mL), Bacillus sp. G2112 could not grow. However, already-grown Bacillus sp. G2112 (OD600 > 1.0) survived PCA treatment, converting it to red pigments. These pigments were purified by reverse-phase chromatography, and identified by high-resolution mass spectrometry, NMR, and chemical degradation as unprecedented 5N-glucosylated phenazine derivatives: 7-imino-5N-(1'β-D-glucopyranosyl)-5,7-dihydrophenazine-1-carboxylic acid and 3-imino-5N-(1'β-D-glucopyranosyl)-3,5-dihydrophenazine-1-carboxylic acid. 3-imino-5N-(1'β-D-glucopyranosyl)-3,5-dihydrophenazine-1-carboxylic acid did not inhibit Bacillus sp. G2112, proving that the observed modification constitutes a resistance mechanism. The coexistence of microorganisms-especially under natural/field conditions-calls for such adaptations, such as PCA inactivation, but these can weaken the potential of the producing organism against pathogens and should be considered during the development of biocontrol strategies.
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Affiliation(s)
- Kenechukwu Iloabuchi
- Department Chemical Ecology/Biological Chemistry, University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany;
- Department of Biochemistry, Faculty of Biological Sciences, University of Nigeria Nsukka, Obukpa Road, Nsukka 410105, Nigeria
| | - Dieter Spiteller
- Department Chemical Ecology/Biological Chemistry, University of Konstanz, Universitätsstraße 10, 78457 Konstanz, Germany;
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Bhargavi G, Arya M, Jambhulkar PP, Singh A, Rout AK, Behera BK, Chaturvedi SK, Singh AK. Evaluation of biocontrol efficacy of rhizosphere dwelling bacteria for management of Fusarium wilt and Botrytis gray mold of chickpea. BMC Genom Data 2024; 25:7. [PMID: 38225553 PMCID: PMC10790480 DOI: 10.1186/s12863-023-01178-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Accepted: 12/04/2023] [Indexed: 01/17/2024] Open
Abstract
BACKGROUND Chickpea (Cicer arietinum L.) production is affected by many biotic factors, among them Fusarium wilt caused by Fusarium oxysporum f. sp. ciceri and Botrytis gray mold caused by Botrytis cinerea led to severe losses. As fungicide application is not advisable, biological management is the best alternative for plant protection. The rhizosphere-dwelling antagonistic bacteria are one of the important successful alternative strategy to manage these diseases of chickpea. Rhizosphere dwelling bacteria serve as biocontrol agents by different mechanisms like producing antibiotics, different enzymes, siderophores against pathogens and thereby reducing the growth of pathogens. RESULTS The present study aimed to isolate rhizospheric bacteria from the soils of different chickpea fields to evaluate biocontrol efficacy of the isolated bacteria to manage Fusarium wilt and Botrytis gray mold in chickpea. A total of 67 bacteria were isolated from chickpea rhizosphere from Bundelkhand region of India. Study revealed the isolated bacteria could reduce the Fusarium oxysporum f. sp. ciceris and Botrytis cinerea infection in chickpea between 17.29 and 75.29%. After screening of all the bacteria for their biocontrol efficacy, 13 most promising bacterial isolates were considered for further study out of which, three bacterial isolates (15d, 9c and 14a) have shown the maximum in vitro antagonistic effects against Fusarium oxysporum f. sp. ciceri and Botrytis cinerea comparable to in vivo effects. However, Isolate (15d) showed highest 87.5% and 82.69% reduction in disease against Fusarium wilt and Botrytis gray mold respectively, under pot condition. Three most potential isolates were characterized at molecular level using 16S rRNA gene and found to be Priestia megaterium (9c and 14a) and Serratia marcescens (15d). CONCLUSION This study identified two native biocontrol agents Priestia megaterium and Serratia marcescens from the rhizospheric soils of Bundelkhand region of India for control of Fusarium wilt, Botrytis gray mold. In future, efforts should be made to further validate the biocontrol agents in conjugation with nanomaterials for enhancing the synergistic effects in managing the fungal diseases in chickpea. This study will definitely enhance our understanding of these bioagents, and to increase their performance by developing effective formulations, application methods, and integrated strategies.
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Affiliation(s)
- Gurreddi Bhargavi
- Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, Uttar Pradesh, India
| | - Meenakshi Arya
- Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, Uttar Pradesh, India.
| | | | - Anshuman Singh
- Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, Uttar Pradesh, India
| | - Ajaya Kumar Rout
- Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, Uttar Pradesh, India
| | - Bijay Kumar Behera
- Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, Uttar Pradesh, India
| | | | - Ashok Kumar Singh
- Rani Lakshmi Bai Central Agricultural University, Jhansi, 284003, Uttar Pradesh, India
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Petrushin IS, Filinova NV, Gutnik DI. Potato Microbiome: Relationship with Environmental Factors and Approaches for Microbiome Modulation. Int J Mol Sci 2024; 25:750. [PMID: 38255824 PMCID: PMC10815375 DOI: 10.3390/ijms25020750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 12/12/2023] [Accepted: 01/03/2024] [Indexed: 01/24/2024] Open
Abstract
Every land plant exists in a close relationship with microbial communities of several niches: rhizosphere, endosphere, phyllosphere, etc. The growth and yield of potato-a critical food crop worldwide-highly depend on the diversity and structure of the bacterial and fungal communities with which the potato plant coexists. The potato plant has a specific part, tubers, and the soil near the tubers as a sub-compartment is usually called the "geocaulosphere", which is associated with the storage process and tare soil microbiome. Specific microbes can help the plant to adapt to particular environmental conditions and resist pathogens. There are a number of approaches to modulate the microbiome that provide organisms with desired features during inoculation. The mechanisms of plant-bacterial communication remain understudied, and for further engineering of microbiomes with particular features, the knowledge on the potato microbiome should be summarized. The most recent approaches to microbiome engineering include the construction of a synthetic microbial community or management of the plant microbiome using genome engineering. In this review, the various factors that determine the microbiome of potato and approaches that allow us to mitigate the negative impact of drought and pathogens are surveyed.
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Affiliation(s)
- Ivan S. Petrushin
- Siberian Institute of Plant Physiology and Biochemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk 664033, Russia; (N.V.F.); (D.I.G.)
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35
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Nascimento AP, Costa Neto PQ, Almeida LN, Vieira LFS, Matos Júnior WA, Ferreira CC, Bezerra CS, Casas LL, Atroch AL, Pereira JO. Guarana propagation strategies: a review. BRAZ J BIOL 2023; 83:e275940. [PMID: 38126638 DOI: 10.1590/1519-6984.275940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 11/20/2023] [Indexed: 12/23/2023] Open
Abstract
Guarana [Paullinia cupana var. sorbilis (Mart.) Ducke] is a species of great economic and social important in Brazil, as it is the only commercial guarana producer in the world. The vegetative propagation method indicated for the culture is stem cuttings, which aims at productivity, tolerance, and uniformity of clonal cultivars, because reproduction by seeds has slow germination and high genetic variability, which in traditional varieties is an undesirable factor. Genetic factors can interfere with the rooting capacity of the crop. Studies seek alternatives that can improve this condition and enhance the production system. Use of growth regulators, microorganisms that promote plant growth, variation of substrates and fertilization, have been strategies used. Preliminary tests on the rate of stem rooting and seed germination with the use of exogenous phytohormone did not demonstrate in relation to the non-application of these inducers. The use of rhizobacteria, which presents itself as a promising activity in many cultures, has not yet been demonstrated in the culture of guarana. On the other hand, the influence of different substrates on rooting has already shown consistent results as a function of rooting rate. Fertilizing the mother plants as recommended by the production system for the crop has proven to be an efficient procedure. There are still few studies aimed at improving the spread of guarana, demonstrating that new protocols need to be explored, or that the protocols already used are reviewed from another perspective.
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Affiliation(s)
- A P Nascimento
- Universidade Federal do Amazonas - UFAM, Programa de Pós-graduação em Biotecnologia, Manaus, AM, Brasil
| | - P Q Costa Neto
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
| | - L N Almeida
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
| | - L F S Vieira
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
| | - W A Matos Júnior
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
| | - C C Ferreira
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
| | - C S Bezerra
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
| | - L L Casas
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
| | - A L Atroch
- Embrapa Amazônia Ocidental, Manaus, AM, Brasil
| | - J O Pereira
- Universidade Federal do Amazonas - UFAM, Faculdade de Ciências Agrárias, Laboratório de Princípios Bioativos de Origem Microbiana, Manaus, AM, Brasil
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Zeng Q, Zhao Y, Shen W, Han D, Yang M. Seed-to-Seed: Plant Core Vertically Transmitted Microbiota. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:19255-19264. [PMID: 38044571 DOI: 10.1021/acs.jafc.3c07092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2023]
Abstract
The plant core microbiota transmitted by seeds have been demonstrated to exist in seeds and adult plants of several crops for multiple generations. They are closely related to plants and are relatively conserved throughout evolution, domestication, and breeding. These microbiota play a vital role in the early stages of plant growth. However, information about their colonization routes, transmission pathways, and final fate remains fragmentary. This review delves into the concept of these microbiota, their colonization sources, transmission pathways, and how they change throughout plant evolution, domestication, and breeding, as well as their effects on plants, based on relevant literature. Finally, the significant potential of incorporating the practical application of seed-transmitted microbiota into plant microbial breeding is emphasized.
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Affiliation(s)
- Quan Zeng
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Yang Zhao
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Wei Shen
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Dejun Han
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Mingming Yang
- College of Agronomy, Northwest A&F University, Yangling, Shaanxi 712100, China
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Sato Y, Miwa T, Inaba T, Akachi T, Tanaka E, Hori T, Murofushi K, Takagi H, Futamata H, Aoyagi T, Habe H. Microbially produced fertilizer provides rhizobacteria to hydroponic tomato roots by forming beneficial biofilms. Appl Microbiol Biotechnol 2023; 107:7365-7374. [PMID: 37773217 DOI: 10.1007/s00253-023-12794-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 09/08/2023] [Accepted: 09/13/2023] [Indexed: 10/01/2023]
Abstract
Hydroponic cultivation of Solanum lycopersicum (tomato) is important, and high tomato production depends on the use of nitrogen and phosphate fertilizers. We had developed a microbial fertilizer (MF), which is mainly composed of nitrate. To investigate the effect of MF on plant growth, hydroponic tomato was grown with MF or commercial inorganic fertilizer (IF), and the microbiomes of the rhizosphere and the liquid phase were analyzed by confocal microscopy and high-throughput sequencing. Plant biomass and biofilm formation were increased by growth in MF compared to IF. The microbial community structures of tomato roots and hydroponic water differed between the two conditions, and three operational taxonomic units (OTUs) dominated in plants grown with MF. The three OTUs were related to Rudaea spp., Chitinophaga spp., and Stenotrophobacter terrae, which are reported to be disease-suppressive epiphytic or endophytic microbes of plant roots. Because these three OTUs also predominated in the MF itself, they were likely provided to the rhizosphere or endophytic environments of tomato roots via hydroponic water. KEY POINTS: • Microbial fertilizer for hydroponic growth enhanced biofilm formation on tomato root. • Microbial fertilizer contains tomato-root epiphytic or endophytic microbes. • Microbial fertilizer provided beneficial microbes to the rhizosphere and endophytic environments of tomato roots via hydroponic water.
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Affiliation(s)
- Yuya Sato
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba West, 16-1 Onogawa, Tsukuba, Ibaraki, 305-8569, Japan.
| | - Teruhiko Miwa
- Department of Eco-Farm, IAI Incorporated, 577-1 Obane, Shimizu, Shizuoka, 424-0103, Japan
| | - Tomohiro Inaba
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba West, 16-1 Onogawa, Tsukuba, Ibaraki, 305-8569, Japan
| | - Takuto Akachi
- Department of Eco-Farm, IAI Incorporated, 577-1 Obane, Shimizu, Shizuoka, 424-0103, Japan
| | - Eiji Tanaka
- Department of Eco-Farm, IAI Incorporated, 577-1 Obane, Shimizu, Shizuoka, 424-0103, Japan
| | - Tomoyuki Hori
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba West, 16-1 Onogawa, Tsukuba, Ibaraki, 305-8569, Japan
| | - Keita Murofushi
- Department of Environment and Energy, Industrial Research Institute of Shizuoka Prefecture, 2078 Makigaya, Aoi-Ku, Shizuoka, Shizuoka, 421-1298, Japan
| | - Hiroshi Takagi
- Numazu Technical Support Center, Industrial Research Institute of Shizuoka Prefecture, 3981-1 Ohoka, Numazu, Shizuoka, 410-0022, Japan
| | - Hiroyuki Futamata
- Department of Applied Chemistry and Biochemical Engineering, Graduate School of Engineering, Shizuoka University, 3-5-1 Johoku, Naka-Ku, Hamamatsu, Shizuoka, 432-8561, Japan
| | - Tomo Aoyagi
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba West, 16-1 Onogawa, Tsukuba, Ibaraki, 305-8569, Japan
| | - Hiroshi Habe
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba West, 16-1 Onogawa, Tsukuba, Ibaraki, 305-8569, Japan.
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Akbaba M, Özden E. Salt tolerance of endophytic root bacteria and their effects on seed germination and viability on tomato plants. Braz J Microbiol 2023; 54:3147-3162. [PMID: 37768522 PMCID: PMC10689620 DOI: 10.1007/s42770-023-01127-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 09/09/2023] [Indexed: 09/29/2023] Open
Abstract
Salinity is one of the most brutal environmental factors limiting the productivity of agricultural lands worldwide. It is considered that the salinity may be one of the important reasons for the low yield in Iğdır of the tomato plants, which is medium resistant (3-5 dS.m-1) among vegetables. Eco-friendly techniques such as endophytic root bacteria treatments (ERB) are needed to restore saline soils to agriculture and also to increase the yield of tomatoes. Endophytic bacteria colonizing the inside of plants increase plant growth by various mechanisms and also mitigate the adverse effects of biotic and abiotic stresses on plants. In this study, endophytic bacteria were isolated from the roots of tomato plants exposed to salt stress. Then, these isolates' tolerance levels to different NaCl (0, 0.1, 0.2, 0.4, 0.8 M) concentrations and their potential to promote plant growth (PGP) traits were determined. It was recorded that 14.8% of the isolates whose salt tolerance was tested were highly tolerant to NaCl and 18.5% were highly susceptible. The tested ERB isolates exhibited typical PGP characteristics such as siderophore production (4-30 mm diameter), phosphate solubilizing activity (6-16 mm diameter), and IAA production activity (24.9-171.6 µg/ml). Moreover, it was determined that the nitrogen fixation potential is high 55.7% of the isolates tested, and 11.1% low. In addition, the effects of ERB treatments on germination and vigor index in two tomato cultivars under standard and saline conditions in the lab were evaluated. Some ERB isolates in tomato plants under standard and saline conditions increased seed viability, hypocotyl length, root length, and seedling fresh weight, and also accelerated germination.
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Affiliation(s)
- Mustafa Akbaba
- Plant Protection, Faculty of Agriculture, Igdir University, Igdir, Turkey.
| | - Eren Özden
- Horticulture, Faculty of Agriculture, Igdir University, Igdir, Turkey
- Horticulture and Agronomy, Faculty of Agriculture, Kyrgyz-Turkish Manas University, Bishkek, Kyrgyz Republic
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Kumari A, Dash M, Singh SK, Jagadesh M, Mathpal B, Mishra PK, Pandey SK, Verma KK. Soil microbes: a natural solution for mitigating the impact of climate change. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:1436. [PMID: 37940796 DOI: 10.1007/s10661-023-11988-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 10/12/2023] [Indexed: 11/10/2023]
Abstract
Soil microbes are microscopic organisms that inhabit the soil and play a significant role in various ecological processes. They are essential for nutrient cycling, carbon sequestration, and maintaining soil health. Importantly, soil microbes have the potential to sequester carbon dioxide (CO2) from the atmosphere through processes like carbon fixation and storage in organic matter. Unlocking the potential of microbial-driven carbon storage holds the key to revolutionizing climate-smart agricultural practices, paving the way for sustainable productivity and environmental conservation. A fascinating tale of nature's unsung heroes is revealed by delving into the realm of soil microbes. The guardians of the Earth are these tiny creatures that live beneath our feet and discreetly work their magic to fend off the effects of climate change. These microbes are also essential for plant growth enhancement through their roles in nutrient uptake, nitrogen fixation, and synthesis of growth-promoting chemicals. By understanding and managing soil microbial communities, it is possible to improve soil health, soil water-holding capacity, and promote plant growth in agricultural and natural ecosystems. Added to it, these microbes play an important role in biodegradation, bioremediation of heavy metals, and phytoremediation, which in turn helps in treating the contaminated soils. Unfortunately, climate change events affect the diversity, composition, and metabolism of these microbes. Unlocking the microbial potential demands an interdisciplinary endeavor spanning microbiology, ecology, agronomy, and climate science. It is a call to arms for the scientific community to recognize soil microbes as invaluable partners in the fight against climate change. By implementing data-driven land management strategies and pioneering interventions, we possess the means to harness their capabilities, paving the way for climate mitigation, sustainable agriculture, and promote ecosystem resilience in the imminent future.
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Affiliation(s)
- Aradhna Kumari
- College of Agriculture, Jawaharlal Nehru Krishi Vishwa Vidyalaya, Ganj Basoda, Vidisha, Madhya Pradesh, 464221, India
| | - Munmun Dash
- Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, 641003, India
| | - Santosh Kumar Singh
- Dr Rajendra Prasad Central Agricultural University, Pusa, Samastipur, Bihar, 848125, India.
| | - M Jagadesh
- Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, 641003, India
| | - Bhupendra Mathpal
- School of Agriculture, Lovely Professional University, Phagwara, Punjab, 144411, India
| | - P K Mishra
- College of Agriculture, Jawaharlal Nehru Krishi Vishwa Vidyalaya, Ganj Basoda, Vidisha, Madhya Pradesh, 464221, India
| | - Sunil Kumar Pandey
- College of Agriculture, Jawaharlal Nehru Krishi Vishwa Vidyalaya, Narmadapuram, Madhya Pradesh, 461110, India
| | - Krishan K Verma
- Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences/Key Laboratory of Sugarcane Biotechnology and Genetic Improvement (Guangxi), Ministry of Agriculture and Rural Affairs/Guangxi Key Laboratory of Sugarcane Genetic Improvement, Nanning, 530007, China.
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Xie J, Singh P, Qi Y, Singh RK, Qin Q, Jin C, Wang B, Fang W. Pseudomonas aeruginosa Strain 91: A Multifaceted Biocontrol Agent against Banana Fusarium Wilt. J Fungi (Basel) 2023; 9:1047. [PMID: 37998853 PMCID: PMC10672659 DOI: 10.3390/jof9111047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 10/20/2023] [Accepted: 10/23/2023] [Indexed: 11/25/2023] Open
Abstract
Banana Fusarium wilt (BFW), caused by the soil-borne fungus Fusarium oxysporum f. sp. cubense (Foc), poses significant threats to banana cultivation. Currently, effective control methods are lacking, and biological control has emerged as a possible strategy to manage BFW outbreaks. In this investigation, 109 bacterial strains were isolated from the rhizospheric soil surrounding banana plants in search of potent biological agents against Foc. Strain 91 exhibited the highest antifungal activity against the causal agent of Foc and was identified as Pseudomonas aeruginosa through 16S rRNA gene sequencing and scanning electron microscopy (SEM). Elucidation of strain 91's inhibitory mechanism against Foc revealed a multifaceted antagonistic approach, encompassing the production of bioactive compounds and the secretion of cell wall hydrolytic enzymes. Furthermore, strain 91 displayed various traits associated with promoting plant growth and showed adaptability to different carbon sources. By genetically tagging with constitutively expressing GFP signals, effective colonization of strain 91 was mainly demonstrated in root followed by leaf and stem tissues. Altogether, our study reveals the potential of P. aeruginosa 91 for biocontrol based on inhibition mechanism, adaptation, and colonization features, thus providing a promising candidate for the control of BFW.
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Affiliation(s)
- Jin Xie
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China; (J.X.); (P.S.); (Y.Q.); (Q.Q.); (C.J.)
| | - Pratiksha Singh
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China; (J.X.); (P.S.); (Y.Q.); (Q.Q.); (C.J.)
| | - Yanhua Qi
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China; (J.X.); (P.S.); (Y.Q.); (Q.Q.); (C.J.)
| | - Rajesh Kumar Singh
- Guangxi Key Laboratory of Sugarcane Genetic Improvement, Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning 530007, China;
| | - Qijian Qin
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China; (J.X.); (P.S.); (Y.Q.); (Q.Q.); (C.J.)
| | - Cheng Jin
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China; (J.X.); (P.S.); (Y.Q.); (Q.Q.); (C.J.)
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Bin Wang
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China; (J.X.); (P.S.); (Y.Q.); (Q.Q.); (C.J.)
| | - Wenxia Fang
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China; (J.X.); (P.S.); (Y.Q.); (Q.Q.); (C.J.)
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Huang T, Zhang Y, Yu Z, Zhuang W, Zeng Z. Bacillus velezensis BV01 Has Broad-Spectrum Biocontrol Potential and the Ability to Promote Plant Growth. Microorganisms 2023; 11:2627. [PMID: 38004639 PMCID: PMC10673169 DOI: 10.3390/microorganisms11112627] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 10/23/2023] [Accepted: 10/23/2023] [Indexed: 11/26/2023] Open
Abstract
To evaluate the potential of a bacterial strain as a fungal disease control agent and plant growth promoter, its inhibitory effects on phytopathogens such as Bipolaris sorokiniana, Botrytis cinerea, Colletotrichum capsici, Fusarium graminearum, F. oxysporum, Neocosmospora rubicola, Rhizoctonia solani, and Verticillium dahliae were investigated. The results showed that the inhibitory rates in dual-culture and sterile filtrate assays against these eight phytopathogens ranged from 57% to 83% and from 36% to 92%. The strain was identified as Bacillus velezensis based on morphological and physiological characterization as well as phylogenetic analyses of 16S rRNA and the gyrase subunit A protein (gyrA) regions. The results demonstrated that B. velezensis was able to produce fungal cell-wall-degrading enzymes, namely, protease, cellulase, and β-1,3-glucanase, and the growth-promotion substances indole-3-acetic acid (IAA) and siderophore. Furthermore, B. velezensis BV01 had significant control effects on wheat root rot and pepper Fusarium wilt in a greenhouse. Potted growth-promotion experiments displayed that BV01 significantly increased the height, stem diameter, and aboveground fresh and dry weights of wheat and pepper. The results imply that B. velezensis BV01, a broad-spectrum biocontrol bacterium, is worth further investigation regarding its practical applications in agriculture.
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Affiliation(s)
- Ting Huang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (T.H.); (Y.Z.); (W.Z.)
- College of Life Sciences, Yangtze University, Jingzhou 434025, China;
| | - Yi Zhang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (T.H.); (Y.Z.); (W.Z.)
| | - Zhihe Yu
- College of Life Sciences, Yangtze University, Jingzhou 434025, China;
| | - Wenying Zhuang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (T.H.); (Y.Z.); (W.Z.)
| | - Zhaoqing Zeng
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China; (T.H.); (Y.Z.); (W.Z.)
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Pradhan S, Choudhury A, Dey S, Hossain MF, Saha A, Saha D. Siderophore-producing Bacillus amyloliquefaciens BM3 mitigate arsenic contamination and suppress Fusarium wilt in brinjal plants. J Appl Microbiol 2023; 134:lxad217. [PMID: 37740438 DOI: 10.1093/jambio/lxad217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 09/08/2023] [Accepted: 09/20/2023] [Indexed: 09/24/2023]
Abstract
AIM Arsenic contamination in agricultural soils poses a serious health risk for humans. Bacteria that produce siderophores, primarily for iron acquisition, can be relevant in combating arsenic toxicity in agricultural soils and simultaneously act as biocontrol agents against plant diseases. We evaluated the arsenic bioremediation and biocontrol potential of the rhizosphere isolate Bacillus amyloliquefaciens BM3 and studied the interaction between the purified siderophore bacillibactin and arsenic. METHODS AND RESULTS BM3 showed high arsenic resistance [MIC value 475 and 24 mM against As(V) and As(III), respectively] and broad spectrum in-vitro antagonism against several phytopathogenic fungi. BM3 was identified by biochemical characterization and 16S rRNA gene sequencing. Scanning electron microscopy (SEM) analysis revealed increased cell size of BM3 when grown in presence of sub-lethal arsenic concentrations. Bioremediation assays showed a 74% and 88.1% reduction in As(V) and As(III) concentrations, respectively. Genetic determinants for arsenic resistance (arsC and aoxB) and antifungal traits (bacAB and chiA) were detected by PCR. Arsenic chelating ability of bacillibactin, the siderophore purified from culture filtrate of BM3 and identified through spectroscopic data analysis, was observed in CAS assay and fluorescence spectrometry. In-vivo application of talc-based formulation of BM3 in brinjal seedlings showed significant reduction in Fusarium wilt disease. CONCLUSION Strain B. amyloliquefaciens BM3 may be useful in arsenic bioremediation and may be considered for large field trials as an alternative to chemical fungicides by inhibiting soil borne pathogens.
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Affiliation(s)
- Smriti Pradhan
- Department of Biotechnology, University of North Bengal, Siliguri, West Bengal 734013, India
| | - Abhinandan Choudhury
- Department of Biotechnology, University of North Bengal, Siliguri, West Bengal 734013, India
| | - Sovan Dey
- Department of Chemistry, University of North Bengal, Siliguri, West Bengal 734013, India
| | - Md Firoj Hossain
- Department of Chemistry, University of North Bengal, Siliguri, West Bengal 734013, India
| | - Aniruddha Saha
- Department of Botany, University of North Bengal, Siliguri, West Bengal 734013, India
| | - Dipanwita Saha
- Department of Biotechnology, University of North Bengal, Siliguri, West Bengal 734013, India
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Xie T, Shen S, Hu R, Li W, Wang J. Screening, Identification, and Growth Promotion of Antagonistic Endophytes Associated with Chenopodium quinoa Against Quinoa Pathogens. PHYTOPATHOLOGY 2023; 113:1839-1852. [PMID: 37948615 DOI: 10.1094/phyto-11-22-0419-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2023]
Abstract
Fungal disease is one of the important reasons for crop yield reduction. Isolation of important endophytes with biocontrol and growth-promoting effects is of great significance for the exploitation of beneficial microbial resources and the biological control of crop fungal diseases. In this study, endophytes from roots, stems, and leaves of quinoa at different growth and development stages were isolated and purified; then the antagonistic activity and growth-promoting characteristics of antagonistic endophytes were determined. Finally, the antagonistic endophytes were identified by morphological characteristics and ITS/16S rRNA sequence analysis. Our results showed that 122 endophytic fungi and 371 endophytic bacteria were isolated from quinoa, of which three endophytic fungi and seven endophytic bacteria were screened that had inhibitory activity against quinoa pathogenic fungi. Most of the antagonistic strains could produce indole-3 acetic acid and had the ability to dissolve organic phosphorus. In addition, the bacterial suspension of endophytic bacteria had the ability to promote the seed germination and plant growth of quinoa. The endophytic fungi with antagonistic activity were identified as Penicillium raperi and P. pulvillorum; the endophytic bacteria were identified as Bacillus paralicheniformis, B. tequilensis, and B. velezensis, respectively. The strains of quinoa endophytes in this study can provide rich microbial resources and a theoretical basis for biological control of plant fungal diseases and agricultural production.
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Affiliation(s)
- Tianyan Xie
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
- Qinghai Qaidam Vocational and Technical College, Delingha 817099, Qinghai, China
| | - Shuo Shen
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
| | - Rong Hu
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
| | - Wei Li
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
| | - Jian Wang
- Academy of Agriculture and Forestry Sciences, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Potato Breeding of Qinghai Province, Xining 810016, Qinghai, China
- State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining 810016, Qinghai, China
- Key Laboratory of Qinghai Tibet Plateau Biotechnology, Ministry of Education, Xining 810016, Qinghai, China
- Northwest Potato Engineering Research Center, Ministry of Education, Xining 810016, Qinghai, China
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Khatri S, Chaudhary P, Shivay YS, Sharma S. Role of Fungi in Imparting General Disease Suppressiveness in Soil from Organic Field. MICROBIAL ECOLOGY 2023; 86:2047-2059. [PMID: 37010558 DOI: 10.1007/s00248-023-02211-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Accepted: 03/17/2023] [Indexed: 06/19/2023]
Abstract
Soil microbial communities are key players responsible for imparting suppressive potential to the soil against soil-borne phytopathogens. Fungi have an immense potential to inhibit soil-borne phytopathogens, but the fungal counterpart has been less explored in this context. We assessed the composition of fungal communities in soil under long-term organic and conventional farming practice, and control soil. The disease-suppressive potential of organic field was already established. A comparative analysis of the disease suppressiveness contributed by the fungal component of soil from conventional and organic farms was assessed using dual culture assays. The quantification of biocontrol markers and total fungi was done; the characterization of fungal community was carried out using ITS-based amplicon sequencing. Soil from organic field exhibited higher disease-suppressive potential than that from conventional farming, against the pathogens selected for the study. Higher levels of hydrolytic enzymes such as chitinase and cellulase, and siderophore production were observed in soil from the organic field compared to the conventional field. Differences in community composition were observed under conventional and organic farming, with soil from organic field exhibiting specific enrichment of key biocontrol fungal genera. The fungal alpha diversity was lower in soil from the organic field compared to the conventional field. Our results highlight the role of fungi in contributing to general disease-suppressive ability of the soil against phytopathogens. The identification of fungal taxa specifically associated with organic farming can aid in understanding the mechanism of disease suppression under such a practice, and can be exploited to induce general disease suppressiveness in otherwise conducive soil.
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Affiliation(s)
- Shivani Khatri
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, 110016, India
| | - Priya Chaudhary
- UQ-IITD Academy of Research, IIT Delhi, New Delhi, 110016, India
| | - Yashbir S Shivay
- Division of Agronomy, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Shilpi Sharma
- Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, New Delhi, 110016, India.
- UQ-IITD Academy of Research, IIT Delhi, New Delhi, 110016, India.
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Ramos ETDA, Olivares FL, da Rocha LO, da Silva RF, do Carmo MGF, Lopes MTG, Meneses CHSG, Vidal MS, Baldani JI. The Effects of Gluconacin on Bacterial Tomato Pathogens and Protection against Xanthomonas perforans, the Causal Agent of Bacterial Spot Disease. PLANTS (BASEL, SWITZERLAND) 2023; 12:3208. [PMID: 37765372 PMCID: PMC10535834 DOI: 10.3390/plants12183208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 09/01/2023] [Accepted: 09/04/2023] [Indexed: 09/29/2023]
Abstract
As agricultural practices become more sustainable, adopting more sustainable practices will become even more relevant. Searching for alternatives to chemical compounds has been the focus of numerous studies, and bacteriocins are tools with intrinsic biotechnological potential for controlling plant diseases. We continued to explore the biotechnological activity of the bacteriocin Gluconacin from Gluconacetobacter diazotrophicus, PAL5 strain, by investigating this protein's antagonism against important tomato phytopathogens and demonstrating its effectiveness in reducing bacterial spots caused by Xanthomonas perforans. In addition to this pathogen, the bacteriocin Gluconacin demonstrated bactericidal activity in vitro against Ralstonia solanacearum and Pseudomonas syringae pv. tomato, agents that cause bacterial wilt and bacterial spots, respectively. Bacterial spot control tests showed that Gluconacin reduced disease severity by more than 66%, highlighting the biotechnological value of this peptide in ecologically correct formulations.
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Affiliation(s)
- Elizabeth Teixeira de Almeida Ramos
- Programa de Pós-Graduação em Fitotecnia (PPGF), Departamento de Fitotecnia, Instituto de Agronomia, Universidade Federal Rural do Rio de Janeiro, Rodovia BR 465, km 07, Seropédica 23890-000, RJ, Brazil; (E.T.d.A.R.); (M.G.F.d.C.)
| | - Fábio Lopes Olivares
- Núcleo de Desenvolvimento de Insumos Biológicos para a Agricultura, Laboratório de Biologia Celular e Tecidual, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes 28013-602, RJ, Brazil; (F.L.O.); (L.O.d.R.)
| | - Letícia Oliveira da Rocha
- Núcleo de Desenvolvimento de Insumos Biológicos para a Agricultura, Laboratório de Biologia Celular e Tecidual, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes 28013-602, RJ, Brazil; (F.L.O.); (L.O.d.R.)
| | - Rogério Freire da Silva
- Programa de Pós-Graduação em Ciências Agrárias, Centro de Ciências Biológicas e da Saúde, Departamento de Biologia, Universidade Estadual da Paraíba, Universitário, Campina Grande 58429-500, PB, Brazil; (R.F.d.S.); (C.H.S.G.M.)
| | - Margarida Goréte Ferreira do Carmo
- Programa de Pós-Graduação em Fitotecnia (PPGF), Departamento de Fitotecnia, Instituto de Agronomia, Universidade Federal Rural do Rio de Janeiro, Rodovia BR 465, km 07, Seropédica 23890-000, RJ, Brazil; (E.T.d.A.R.); (M.G.F.d.C.)
| | - Maria Teresa Gomes Lopes
- Faculdade de Ciências Agrárias, Universidade Federal do Amazonas, Avenida Rodrigo Otávio Ramos, 3.000, Bairro Coroado, Manaus 69077-000, AM, Brazil;
| | - Carlos Henrique Salvino Gadelha Meneses
- Programa de Pós-Graduação em Ciências Agrárias, Centro de Ciências Biológicas e da Saúde, Departamento de Biologia, Universidade Estadual da Paraíba, Universitário, Campina Grande 58429-500, PB, Brazil; (R.F.d.S.); (C.H.S.G.M.)
| | - Marcia Soares Vidal
- Embrapa Agrobiologia, Rodovia BR 465, km 07, Seropédica 23891-000, RJ, Brazil;
| | - José Ivo Baldani
- Embrapa Agrobiologia, Rodovia BR 465, km 07, Seropédica 23891-000, RJ, Brazil;
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Liu H, Fu G, Li Y, Zhang S, Ji X, Qiao K. Biocontrol Efficacy of Bacillus methylotrophicus TA-1 Against Meloidogyne incognita in Tomato. PLANT DISEASE 2023; 107:2709-2715. [PMID: 36774575 DOI: 10.1094/pdis-12-22-2801-re] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Root-knot nematodes (RKNs) are harmful plant-parasitic nematodes of tomatoes which can cause significant yield losses. Therefore, there is increasing interest in exploring the application of bacterial nematicides. The bacterium Bacillus methylotrophicus TA-1 is a broad-spectrum biological control agent; however, its effect on RKNs control remains largely unclear. In this study, the toxicity of B. methylotrophicus TA-1 against Meloidogyne incognita was investigated in vitro, and the potential of B. methylotrophicus TA-1 to decrease infection of RKNs in tomato were evaluated in pot and field trials. Results showed that B. methylotrophicus TA-1 exhibited high nematicidal activity against second-stage juveniles (J2s) and eggs of M. incognita with 50% lethal concentration (LC50) values of 5.80 and 7.00 × 108 colony forming units (CFU)/ml, respectively. In the pot experiments and field trials conducted in 2020 and 2021, tomato plants treated with B. methylotrophicus TA-1 soil drench applied once at 3, 6, and 9 × 108 CFU/plant had significantly higher plant height and greater yield compared with the untreated control. Tomato yields of the treated plots with B. methylotrophicus TA-1 in 2 consecutive years' field trials were between 53.4 to 66.1 and 52.8 to 61.5 t/ha, while they were 49.7 and 48.2 t/ha in the untreated control for each year, respectively. The lowest population densities of M. incognita at 30 and 60 days after treatment were 119 and 135 J2s per 100 g soil in 2020 and 43 and 118 J2s in 2021 in TA-1-treated plots. The lowest gall index of 4.7 and 3.3 in 2020 and 2021, respectively, and the highest yield were all observed in the TA-1 at 9 × 108 CFU/plant treated plants, with no significant differences with the commercial control abamectin. These results provided a basis for further studies of B. methylotrophicus TA-1 formulations, application doses, frequencies, and mechanisms of action, which are necessary before it could be used as a component of integrated management programs to manage RKNs in tomato production.
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Affiliation(s)
- Huimin Liu
- Key Laboratory of Pesticide Toxicology & Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, Shandong 271018, China
| | - Guanghan Fu
- Key Laboratory of Pesticide Toxicology & Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, Shandong 271018, China
| | - Yujie Li
- Key Laboratory of Pesticide Toxicology & Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, Shandong 271018, China
| | - Shouan Zhang
- Tropical Research and Education Center, Department of Plant Pathology, University of Florida, IFAS, Homestead, FL 33031, U.S.A
| | - Xiaoxue Ji
- Key Laboratory of Pesticide Toxicology & Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, Shandong 271018, China
| | - Kang Qiao
- Key Laboratory of Pesticide Toxicology & Application Technique, College of Plant Protection, Shandong Agricultural University, Tai'an, Shandong 271018, China
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Naranjo HD, Rat A, De Zutter N, De Ridder E, Lebbe L, Audenaert K, Willems A. Uncovering Genomic Features and Biosynthetic Gene Clusters in Endophytic Bacteria from Roots of the Medicinal Plant Alkanna tinctoria Tausch as a Strategy To Identify Novel Biocontrol Bacteria. Microbiol Spectr 2023; 11:e0074723. [PMID: 37436171 PMCID: PMC10434035 DOI: 10.1128/spectrum.00747-23] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 06/25/2023] [Indexed: 07/13/2023] Open
Abstract
The world's population is increasing at a rate not seen in the past. Agriculture, providing food for this increasing population, is reaching its boundaries of space and natural resources. In addition, changing legislation and increased ecological awareness are forcing agriculture to reduce its environmental impact. This entails the replacement of agrochemicals with nature-based solutions. In this regard, the search for effective biocontrol agents that protect crops from pathogens is in the spotlight. In this study, we have investigated the biocontrol activity of endophytic bacteria isolated from the medicinal plant Alkanna tinctoria Tausch. To do so, an extensive collection of bacterial strains was initially genome sequenced and in silico screened for features related to plant stimulation and biocontrol. Based on this information, a selection of bacteria was tested in vitro for antifungal activity using direct antagonism in a plate assay and in planta with a detached-leaf assay. Bacterial strains were tested individually and in combinations to assess the best-performing treatments. The results revealed that many bacteria could produce metabolites that efficiently inhibit the proliferation of several fungi, especially Fusarium graminearum. Among these, Pseudomonas sp. strain R-71838 showed a strong antifungal effect, in both dual-culture and in planta assays, making it the most promising candidate for biocontrol application. Using microbes from medicinal plants, this study highlights the opportunities of using genomic information to speed up the screening of a taxonomically diverse set of bacteria with biocontrol properties. IMPORTANCE Phytopathogenic fungi are a major threat to global food production. The most common management practice to prevent plant infections involves the intensive use of fungicides. However, with the growing awareness of the ecological and human impacts of chemicals, there is a need for alternative strategies, such as the use of bacterial biocontrol agents. Limitations in the design of bacterial biocontrol included the need for labor-intensive and time-consuming experiments to test a wide diversity of strains and the lack of reproducibility of their activity against pathogens. Here, we show that genomic information is an effective tool to select bacteria of interest quickly. Also, we highlight that the strain Pseudomonas sp. R-71838 produced a reproducible antifungal effect both in vitro and in planta. These findings build a foundation for designing a biocontrol strategy based on Pseudomonas sp. R-71838.
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Affiliation(s)
- Henry D. Naranjo
- Laboratory of Microbiology, Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University, Ghent, Belgium
| | - Angélique Rat
- Laboratory of Microbiology, Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University, Ghent, Belgium
| | - Noémie De Zutter
- Laboratory of Applied Mycology and Phenomics, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Emmelie De Ridder
- Laboratory of Microbiology, Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University, Ghent, Belgium
| | - Liesbeth Lebbe
- Laboratory of Microbiology, Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University, Ghent, Belgium
| | - Kris Audenaert
- Laboratory of Applied Mycology and Phenomics, Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Anne Willems
- Laboratory of Microbiology, Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University, Ghent, Belgium
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48
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Li L, Meng D, Yin H, Zhang T, Liu Y. Genome-resolved metagenomics provides insights into the ecological roles of the keystone taxa in heavy-metal-contaminated soils. Front Microbiol 2023; 14:1203164. [PMID: 37547692 PMCID: PMC10402746 DOI: 10.3389/fmicb.2023.1203164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 06/29/2023] [Indexed: 08/08/2023] Open
Abstract
Microorganisms that exhibit resistance to environmental stressors, particularly heavy metals, have the potential to be used in bioremediation strategies. This study aimed to explore and identify microorganisms that are resistant to heavy metals in soil environments as potential candidates for bioremediation. Metagenomic analysis was conducted using microbiome metagenomes obtained from the rhizosphere of soil contaminated with heavy metals and mineral-affected soil. The analysis resulted in the recovery of a total of 175 metagenome-assembled genomes (MAGs), 73 of which were potentially representing novel taxonomic levels beyond the genus level. The constructed ecological network revealed the presence of keystone taxa, including Rhizobiaceae, Xanthobacteraceae, Burkholderiaceae, and Actinomycetia. Among the recovered MAGs, 50 were associated with these keystone taxa. Notably, these MAGs displayed an abundance of genes conferring resistance to heavy metals and other abiotic stresses, particularly those affiliated with the keystone taxa. These genes were found to combat excessive accumulation of zinc/manganese, arsenate/arsenite, chromate, nickel/cobalt, copper, and tellurite. Furthermore, the keystone taxa were found to utilize both organic and inorganic energy sources, such as sulfur, arsenic, and carbon dioxide. Additionally, these keystone taxa exhibited the ability to promote vegetation development in re-vegetated mining areas through phosphorus solubilization and metabolite secretion. In summary, our study highlights the metabolic adaptability and ecological significance of microbial keystone taxa in mineral-affected soils. The MAGs associated with keystone taxa exhibited a markedly higher number of genes related to abiotic stress resistance and plant growth promotion compared to non-keystone taxa MAGs.
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Affiliation(s)
- Liangzhi Li
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
| | - Delong Meng
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
| | - Huaqun Yin
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
| | - Teng Zhang
- School of Minerals Processing and Bioengineering, Central South University, Changsha, China
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha, China
- Hunan Urban and Rural Environmental Construction Co., Ltd, Changsha, China
| | - Yongjun Liu
- Hunan Tobacco Science Institute, Changsha, China
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49
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Hanifah NASB, Ghadamgahi F, Ghosh S, Ortiz R, Whisson SC, Vetukuri RR, Kalyandurg PB. Comparative transcriptome profiling provides insights into the growth promotion activity of Pseudomonas fluorescens strain SLU99 in tomato and potato plants. FRONTIERS IN PLANT SCIENCE 2023; 14:1141692. [PMID: 37534284 PMCID: PMC10393259 DOI: 10.3389/fpls.2023.1141692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 04/03/2023] [Indexed: 08/04/2023]
Abstract
The use of biocontrol agents with plant growth-promoting activity has emerged as an approach to support sustainable agriculture. During our field evaluation of potato plants treated with biocontrol rhizobacteria, four bacteria were associated with increased plant height. Using two important solanaceous crop plants, tomato and potato, we carried out a comparative analysis of the growth-promoting activity of the four bacterial strains: Pseudomonas fluorescens SLU99, Serratia plymuthica S412, S. rubidaea AV10, and S. rubidaea EV23. Greenhouse and in vitro experiments showed that P. fluorescens SLU99 promoted plant height, biomass accumulation, and yield of potato and tomato plants, while EV23 promoted growth in potato but not in tomato plants. SLU99 induced the expression of plant hormone-related genes in potato and tomato, especially those involved in maintaining homeostasis of auxin, cytokinin, gibberellic acid and ethylene. Our results reveal potential mechanisms underlying the growth promotion and biocontrol effects of these rhizobacteria and suggest which strains may be best deployed for sustainably improving crop yield.
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Affiliation(s)
- Nurul Atilia Shafienaz binti Hanifah
- Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, Lomma, Sweden
- Agrobiodiversity and Environment Research Centre, Malaysian Agricultural Research and Development Institute (MARDI), Serdang, Selangor, Malaysia
| | - Farideh Ghadamgahi
- Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Samrat Ghosh
- Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Rodomiro Ortiz
- Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Stephen C. Whisson
- Cell and Molecular Sciences, James Hutton Institute, Dundee, United Kingdom
| | - Ramesh R. Vetukuri
- Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, Lomma, Sweden
| | - Pruthvi B. Kalyandurg
- Department of Plant Breeding, Horticum, Swedish University of Agricultural Sciences, Lomma, Sweden
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50
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Salazar B, Ortiz A, Keswani C, Minkina T, Mandzhieva S, Pratap Singh S, Rekadwad B, Borriss R, Jain A, Singh HB, Sansinenea E. Bacillus spp. as Bio-factories for Antifungal Secondary Metabolites: Innovation Beyond Whole Organism Formulations. MICROBIAL ECOLOGY 2023; 86:1-24. [PMID: 35604432 DOI: 10.1007/s00248-022-02044-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Accepted: 05/13/2022] [Indexed: 06/15/2023]
Abstract
Several fungi act as parasites for crops causing huge annual crop losses at both pre- and post-harvest stages. For years, chemical fungicides were the solution; however, their wide use has caused environmental contamination and human health problems. For this reason, the use of biofungicides has been in practice as a green solution against fungal phytopathogens. In the context of a more sustainable agriculture, microbial biofungicides have the largest share among the commercial biocontrol products that are available in the market. Precisely, the genus Bacillus has been largely studied for the management of plant pathogenic fungi because they offer a chemically diverse arsenal of antifungal secondary metabolites, which have spawned a heightened industrial engrossment of it as a biopesticide. In this sense, it is indispensable to know the wide arsenal that Bacillus genus has to apply these products for sustainable agriculture. Having this idea in our minds, in this review, secondary metabolites from Bacillus having antifungal activity are chemically and structurally described giving details of their action against several phytopathogens. Knowing the current status of Bacillus secreted antifungals is the base for the goal to apply these in agriculture and it is addressed in depth in the second part of this review.
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Affiliation(s)
- Bruno Salazar
- Facultad De Ciencias Químicas, Benemérita Universidad Autónoma De Puebla, 72590, Puebla, Pue, México
| | - Aurelio Ortiz
- Facultad De Ciencias Químicas, Benemérita Universidad Autónoma De Puebla, 72590, Puebla, Pue, México
| | - Chetan Keswani
- Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don, 344006, Russia
| | - Tatiana Minkina
- Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don, 344006, Russia
| | - Saglara Mandzhieva
- Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don, 344006, Russia
| | - Satyendra Pratap Singh
- Department of Mycology and Plant Pathology, Institute of Agricultural Sciences, Banaras Hindu University, Varanasi, 221005, India
| | - Bhagwan Rekadwad
- Division of Microbiology and Biotechnology, Yenepoya Research Centre, Yenepoya (Deemed to Be University), Mangalore, 575018, Karnataka, India
| | - Rainer Borriss
- Institut Für Agrar- Und Gartenbauwissenschaften, Fachgebiet Phytomedizin, Humboldt-Universität Zu Berlin, Lentze-Allee 55-57, 14195, Berlin, Germany
| | - Akansha Jain
- Division of Plant Biology, Bose Institute, CIT Road, Kankurgachi, Kolkata, India
| | - Harikesh B Singh
- Department of Biotechnology, GLA University, Mathura, 281406, India
| | - Estibaliz Sansinenea
- Facultad De Ciencias Químicas, Benemérita Universidad Autónoma De Puebla, 72590, Puebla, Pue, México.
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