1
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Wang X, Kong DK, Zhang HR, Zou Y. Discovery of a polyketide carboxylate phytotoxin from a polyketide glycoside hybrid by β-glucosidase mediated ester bond hydrolysis. Chem Sci 2024:d4sc05256k. [PMID: 39360009 PMCID: PMC11441467 DOI: 10.1039/d4sc05256k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2024] [Accepted: 09/23/2024] [Indexed: 10/04/2024] Open
Abstract
Fungal phytotoxins cause significant harm to agricultural production or lead to plant diseases. Discovering new phytotoxins, dissecting their formation mechanism and understanding their action mode are important for controlling the harmful effects of fungal phytopathogens. In this study, a long-term unsolved cluster (polyketide synthase 16, PKS16 cluster) from Fusarium species was thoroughly investigated and a series of new metabolites including both complex α-pyrone-polyketide glycosides and simple polyketide carboxylates were identified from F. proliferatum. The whole pathway reveals an unusual assembly and inactivation process for phytotoxin biosynthesis, with key points as follows: (1) a flavin dependent monooxygenase catalyzes Baeyer-Villiger oxidation on the linear polyketide side chain of α-pyrone-polyketide glycoside 8 to form ester bond compound 1; (2) a β-glucosidase unexpectedly mediates the ester bond hydrolysis of 1 to generate polyketide carboxylate phytotoxin 2; (3) oxidation occurring on the terminal inert carbons of 2 by intracellular oxidase(s) eliminates its phytotoxicity. Our work identifies the chemical basis of the PKS16 cluster in phytotoxicity, shows that polyketide carboxylate is a new structural type of phytotoxin in Fusarium and importantly uncovers a rare ester bond hydrolysis function of β-glucosidase family enzymes.
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Affiliation(s)
- Xin Wang
- College of Pharmaceutical Sciences, Southwest University Chongqing 400715 P. R. China
| | - De-Kun Kong
- College of Pharmaceutical Sciences, Southwest University Chongqing 400715 P. R. China
| | - Hua-Ran Zhang
- College of Pharmaceutical Sciences, Southwest University Chongqing 400715 P. R. China
| | - Yi Zou
- College of Pharmaceutical Sciences, Southwest University Chongqing 400715 P. R. China
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2
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Nguyen TBH, Foulongne-Oriol M, Jany JL, le Floch G, Picot A. New insights into mycotoxin risk management through fungal population genetics and genomics. Crit Rev Microbiol 2024:1-22. [PMID: 39188135 DOI: 10.1080/1040841x.2024.2392179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 05/08/2024] [Accepted: 08/09/2024] [Indexed: 08/28/2024]
Abstract
Mycotoxin contamination of food and feed is a major global concern. Chronic or acute dietary exposure to contaminated food and feed can negatively affect both human and animal health. Contamination occurs through plant infection by toxigenic fungi, primarily Aspergillus and Fusarium spp., either before or after harvest. Despite the application of various management strategies, controlling these pathogens remains a major challenge primarily because of their ability to adapt to environmental changes and selection pressures. Understanding the genetic structure of plant pathogen populations is pivotal for gaining new insights into their biology and epidemiology, as well as for understanding the mechanisms behind their adaptability. Such deeper understanding is crucial for developing effective and preemptive management strategies tailored to the evolving nature of pathogenic populations. This review focuses on the population-level variations within the two most economically significant toxigenic fungal genera according to space, host, and pathogenicity. Outcomes in terms of migration patterns, gene flow within populations, mating abilities, and the potential for host jumps are examined. We also discuss effective yet often underutilized applications of population genetics and genomics to address practical challenges in the epidemiology and disease control of toxigenic fungi.
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Affiliation(s)
- Toan Bao Hung Nguyen
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, Plouzané, France
| | | | - Jean-Luc Jany
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, Plouzané, France
| | - Gaétan le Floch
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, Plouzané, France
| | - Adeline Picot
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, Plouzané, France
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3
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Kelman MJ, Miller JD, Renaud JB, Baskova D, Sumarah MW. A Multi-Year Study of Mycotoxin Co-Occurrence in Wheat and Corn Grown in Ontario, Canada. Toxins (Basel) 2024; 16:372. [PMID: 39195782 PMCID: PMC11359917 DOI: 10.3390/toxins16080372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Revised: 08/13/2024] [Accepted: 08/16/2024] [Indexed: 08/29/2024] Open
Abstract
Mycotoxin emergence and co-occurrence trends in Canadian grains are dynamic and evolving in response to changing weather patterns within each growing season. The mycotoxins deoxynivalenol and zearalenone are the dominant mycotoxins detected in grains grown in Eastern Canada. Two potential emerging mycotoxins of concern are sterigmatocystin, produced by Aspergillus versicolor, and diacetoxyscirpenol, a type A trichothecene produced by a number of Fusarium species. In response to a call from the 83rd Joint Expert Committee on Food Additives and Contaminants, we conducted a comprehensive survey of samples from cereal production areas in Ontario, Canada. Some 159 wheat and 160 corn samples were collected from farms over a three-year period. Samples were extracted and analyzed by LC-MS/MS for 33 mycotoxins and secondary metabolites. Ergosterol was analyzed as an estimate of the overall fungal biomass in the samples. In wheat, the ratio of DON to its glucoside, deoxynivalenol-3-glucoside (DON-3G), exhibited high variability, likely attributable to differences among cultivars. In corn, the ratio was more consistent across the samples. Sterigmatocystin was detected in some wheat that had higher concentrations of ergosterol. Diacetoxyscirpenol was not detected in either corn or wheat over the three years, demonstrating a low risk to Ontario grain. Overall, there was some change to the mycotoxin profiles over the three years for wheat and corn. Ongoing surveys are required to reassess trends and ensure the safety of the food value chain, especially for emerging mycotoxins.
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Affiliation(s)
- Megan J. Kelman
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, ON N5V 4T3, Canada; (M.J.K.); (J.B.R.); (D.B.)
| | - J. David Miller
- Department of Chemistry, Carleton University, 1125 Colonel By Drive, Ottawa, ON K1S 5B6, Canada;
| | - Justin B. Renaud
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, ON N5V 4T3, Canada; (M.J.K.); (J.B.R.); (D.B.)
| | - Daria Baskova
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, ON N5V 4T3, Canada; (M.J.K.); (J.B.R.); (D.B.)
- Department of Chemistry, University of Western Ontario, 1151 Richmond Street, London, ON N6A 5B7, Canada
| | - Mark W. Sumarah
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, ON N5V 4T3, Canada; (M.J.K.); (J.B.R.); (D.B.)
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4
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Wang S, Chen K, Guo J, Zhang P, Li Y, Xu Z, Cui L, Qiang Y. Identification of Pathogen Causing Bulb Rot in Fritillaria taipaiensis P. Y. Li and Establishment of Detection Methods. PLANTS (BASEL, SWITZERLAND) 2024; 13:2236. [PMID: 39204672 PMCID: PMC11360731 DOI: 10.3390/plants13162236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/13/2024] [Revised: 08/04/2024] [Accepted: 08/08/2024] [Indexed: 09/04/2024]
Abstract
Fritillaria taipaiensis P. Y. Li (F. taipaiensis) is a traditional Chinese herbal medicine that has been used for over two millennia to treat cough and expectoration. However, the increasing cultivation of F. taipaiensis has led to the spread of bulb rot diseases. In this study, pathogens were isolated from rotten F. taipaiensis bulbs. Through molecular identification, pathogenicity testing, morphological assessment, and microscopy, Fusarium solani was identified as the pathogen causing bulb rot in F. taipaiensis. The colonization of F. solani in the bulbs was investigated through microscopic observation. The rapid and accurate detection of this pathogen will contribute to better disease monitoring and control. Loop-mediated isothermal amplification (LAMP) and qPCR methods were established to quickly and specifically identify this pathogen. These results provide valuable insights for further research on the prediction, rapid detection, and effective prevention and control of bulb rot in F. taipaiensis.
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Affiliation(s)
- Shijie Wang
- National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi’an 710119, China; (S.W.); (J.G.); (P.Z.); (Y.L.); (Z.X.)
- Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, Shaanxi Normal University, Xi’an 710119, China
- College of Life Sciences, Shaanxi Normal University, Xi’an 710119, China
| | - Keke Chen
- School of Biological and Environmental Engineering, Xi’an University, Xi’an 710065, China;
| | - Jiaqi Guo
- National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi’an 710119, China; (S.W.); (J.G.); (P.Z.); (Y.L.); (Z.X.)
- Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, Shaanxi Normal University, Xi’an 710119, China
- College of Life Sciences, Shaanxi Normal University, Xi’an 710119, China
| | - Panwang Zhang
- National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi’an 710119, China; (S.W.); (J.G.); (P.Z.); (Y.L.); (Z.X.)
- Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, Shaanxi Normal University, Xi’an 710119, China
- College of Life Sciences, Shaanxi Normal University, Xi’an 710119, China
| | - Yuchen Li
- National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi’an 710119, China; (S.W.); (J.G.); (P.Z.); (Y.L.); (Z.X.)
- Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, Shaanxi Normal University, Xi’an 710119, China
- College of Life Sciences, Shaanxi Normal University, Xi’an 710119, China
| | - Zhenghao Xu
- National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi’an 710119, China; (S.W.); (J.G.); (P.Z.); (Y.L.); (Z.X.)
- Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, Shaanxi Normal University, Xi’an 710119, China
- College of Life Sciences, Shaanxi Normal University, Xi’an 710119, China
| | - Langjun Cui
- National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi’an 710119, China; (S.W.); (J.G.); (P.Z.); (Y.L.); (Z.X.)
- Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, Shaanxi Normal University, Xi’an 710119, China
- College of Life Sciences, Shaanxi Normal University, Xi’an 710119, China
| | - Yi Qiang
- National Engineering Laboratory for Resource Development of Endangered Chinese Crude Drugs in Northwest of China, Shaanxi Normal University, Xi’an 710119, China; (S.W.); (J.G.); (P.Z.); (Y.L.); (Z.X.)
- Key Laboratory of Medicinal Resources and Natural Pharmaceutical Chemistry, The Ministry of Education, Shaanxi Normal University, Xi’an 710119, China
- College of Life Sciences, Shaanxi Normal University, Xi’an 710119, China
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5
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Zhang MQ, Yang Z, Dong YX, Zhu YL, Chen XY, Dai CC, Zhichun Z, Mei YZ. Expression of endogenous UDP-glucosyltransferase in endophyte Phomopsis liquidambaris reduces deoxynivalenol contamination in wheat. Fungal Genet Biol 2024; 173:103899. [PMID: 38802054 DOI: 10.1016/j.fgb.2024.103899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 05/20/2024] [Accepted: 05/24/2024] [Indexed: 05/29/2024]
Abstract
Fusarium head blight is a devastating disease that causes severe yield loses and mycotoxin contamination in wheat grain. Additionally, balancing the trade-off between wheat production and disease resistance has proved challenging. This study aimed to expand the genetic tools of the endophyte Phomopsis liquidambaris against Fusarium graminearum. Specifically, we engineered a UDP-glucosyltransferase-expressing P. liquidambaris strain (PL-UGT) using ADE1 as a selection marker and obtained a deletion mutant using an inducible promoter that drives Cas9 expression. Our PL-UGT strain converted deoxynivalenol (DON) into DON-3-G in vitro at a rate of 71.4 % after 36 h. DON inactivation can be used to confer tolerance in planta. Wheat seedlings inoculated with endophytic strain PL-UGT showed improved growth compared with those inoculated with wildtype P. liquidambaris. Strain PL-UGT inhibited the growth of Fusarium graminearum and reduced infection rate to 15.7 %. Consistent with this finding, DON levels in wheat grains decreased from 14.25 to 0.56 μg/g when the flowers were pre-inoculated with PL-UGT and then infected with F. graminearum. The expression of UGT in P. liquidambaris was nontoxic and did not inhibit plant growth. Endophytes do not enter the seeds nor induce plant disease, thereby representing a novel approach to fungal disease control.
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Affiliation(s)
- Meng-Qian Zhang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023 Jiangsu, China
| | - Zhi Yang
- Wuhan Sunhy Biology Co., Ltd.,Wuhan, 430000, Hubei, China
| | - Yu-Xin Dong
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023 Jiangsu, China
| | - Ya-Li Zhu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023 Jiangsu, China
| | - Xin-Yi Chen
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023 Jiangsu, China
| | - Chuan-Chao Dai
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023 Jiangsu, China
| | - Zhan Zhichun
- Wuhan Sunhy Biology Co., Ltd.,Wuhan, 430000, Hubei, China
| | - Yan-Zhen Mei
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023 Jiangsu, China.
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6
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Chibuogwu MO, Groves CL, Mueller B, Smith DL. Effect of Fungicide Application and Corn Hybrid Class on the Presence of Fusarium graminearum and the Concentration of Deoxynivalenol in Ear and Stalk Parts of Corn ( Zea mays) Used for Silage. PLANT DISEASE 2024; 108:2090-2095. [PMID: 38393756 DOI: 10.1094/pdis-12-23-2662-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/25/2024]
Abstract
In Wisconsin, the use of brown midrib (BMR) corn (Zea mays) hybrids for ensiling and subsequent feeding to dairy cows is quite common. The overall milk production from cows fed silage from BMR hybrids is typically higher than those fed silage made from dual-purpose hybrids. Gibberella diseases (ear and stalk rot) caused by Gibberella zeae (anamorph; Fusarium graminearum) and the accompanying accumulation of the mycotoxin deoxynivalenol (DON) can be significant issues during the field production of BMR hybrids. The work presented here aimed to understand the role of hybrid class on the distribution of F. graminearum DNA and DON in the ear and stalk parts of corn for silage. An ear and stalk partitioned sample experiment was conducted on silage corn from field trials in Arlington, Wisconsin, in 2020 and 2021. The trials were arranged in a randomized complete block design in both years, including one BMR hybrid, one dual-purpose hybrid, and seven fungicide application regimes. Paired ear and stalk samples were physically separated, dried, and ground at harvest before determining the concentration of F. graminearum DNA and DON in each sample. Across both years, the main effects of hybrid, treatment, and plant part were not significant (P > 0.1) on DON concentration. However, the hybrid-by-plant part interaction effect was significant (P < 0.01). Ears of the BMR hybrid accumulated the most DON, whereas the dual-purpose hybrid ears had the lowest DON concentration. The concentrations of DON and F. graminearum DNA were significantly (P < 0.01) and highly correlated in the ear (r = 0.73) but not in the stalk (r = 0.09, P = 0.33). These findings suggest that DON accumulation in the corn ear is a major contributor in the difference observed in the total DON between the hybrid classes. Therefore, growers and researchers are encouraged to focus production and breeding on hybrids in both classes that accumulate less DON in ears, resulting in lower total DON in corn chopped for silage.
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Affiliation(s)
| | - Carol L Groves
- Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI
| | - Brian Mueller
- Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI
| | - Damon L Smith
- Department of Plant Pathology, University of Wisconsin-Madison, Madison, WI
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7
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Qi Z, Tian L, Zhang H, Zhou X, Lei Y, Tang F. Mycobiome mediates the interaction between environmental factors and mycotoxin contamination in wheat grains. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 928:172494. [PMID: 38631642 DOI: 10.1016/j.scitotenv.2024.172494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 04/11/2024] [Accepted: 04/12/2024] [Indexed: 04/19/2024]
Abstract
Environmental factors significantly impact grain mycobiome assembly and mycotoxin contamination. However, there is still a lack of understanding regarding the wheat mycobiome and the role of fungal communities in the interaction between environmental factors and mycotoxins. In this study, we collected wheat grain samples from 12 major wheat-producing provinces in China during both the harvest and storage periods. Our aim was to evaluate the mycobiomes in wheat samples with varying deoxynivalenol (DON) contamination levels and to confirm the correlation between environmental factors, the wheat mycobiome, and mycotoxins. The results revealed significant differences in the wheat mycobiome and co-occurrence network between contaminated and uncontaminated wheat samples. Fusarium was identified as the main differential taxon responsible for inducing DON contamination in wheat. Correlation analysis identified key factors affecting mycotoxin contamination. The results indicate that both environmental factors and the wheat mycobiome play significant roles in the production and accumulation of DON. Environmental factors can affect the wheat mycobiome assembly, and wheat mycobiome mediates the interaction between environmental factors and mycotoxin contamination. Furthermore, a random forest (RF) model was developed using key biological indicators and environmental features to predict DON contamination in wheat with accuracies exceeding 90 %. The findings provide data support for the accurate prediction of mycotoxin contamination and lay the foundation for the research on biological control technologies of mycotoxin through the assembly of synthetic microbial communities.
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Affiliation(s)
- Zhihui Qi
- Academy of National Food and Strategic Reserves Administration, Beijing 100037, PR China; National Engineering Research Center of Grain Storage and Logistics, Beijing 102209, PR China
| | - Lin Tian
- Academy of National Food and Strategic Reserves Administration, Beijing 100037, PR China; National Engineering Research Center of Grain Storage and Logistics, Beijing 102209, PR China
| | - Haiyang Zhang
- Academy of National Food and Strategic Reserves Administration, Beijing 100037, PR China; National Engineering Research Center of Grain Storage and Logistics, Beijing 102209, PR China
| | - Xin Zhou
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, PR China; College of Life Science, University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Yuqing Lei
- Academy of National Food and Strategic Reserves Administration, Beijing 100037, PR China; National Engineering Research Center of Grain Storage and Logistics, Beijing 102209, PR China
| | - Fang Tang
- Academy of National Food and Strategic Reserves Administration, Beijing 100037, PR China; National Engineering Research Center of Grain Storage and Logistics, Beijing 102209, PR China.
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8
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Yu H, Chang KF, Fredua-Agyeman R, Hwang SF, Strelkov SE. Diversity and Pathogenicity of Fusarium Root Rot Fungi from Canola ( Brassica napus) in Alberta, Canada. Int J Mol Sci 2024; 25:6244. [PMID: 38892432 PMCID: PMC11172839 DOI: 10.3390/ijms25116244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 06/01/2024] [Accepted: 06/03/2024] [Indexed: 06/21/2024] Open
Abstract
Root rot disease poses a significant threat to canola (Brassica napus), underscoring the need for a comprehensive understanding of its causal agents for more effective disease mitigation. The composition and diversity of fungal pathogens associated with root rot of canola in Alberta, Canada, were evaluated from plant tissue samples collected in 2021 and 2022. The study revealed Fusarium spp. as the predominant pathogens found in almost all surveyed fields. Fusarium avenaceum, F. redolens, and F. solani were among the most frequently recovered species. Greenhouse trials confirmed their pathogenicity, with F. avenaceum and F. sporotrichioides found to be particularly aggressive. Additionally, F. sporotrichioides and F. commune were identified for the first time as canola root rot pathogens. Inoculation with isolates of most species resulted in significant reductions in seedling emergence, plant height, and shoot and root dry weights. Analysis of translation elongation factor 1-α (TEF-1α) and internal transcribed spacer (ITS) sequences confirmed the identity of the Fusarium spp., while concatenating the ITS and TEF-1α sequences enabled improved species differentiation. Geographic and year effects did not influence fungal diversity or aggressiveness, as determined by principal component analysis. This study emphasized the high diversity and impact of Fusarium spp. in causing canola root rot.
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Affiliation(s)
- Haitian Yu
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada; (H.Y.); (K.-F.C.); (R.F.-A.)
- Institute of Food Crops, Yunnan Academy of Agricultural Science, Kunming 650205, China
| | - Kan-Fa Chang
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada; (H.Y.); (K.-F.C.); (R.F.-A.)
| | - Rudolph Fredua-Agyeman
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada; (H.Y.); (K.-F.C.); (R.F.-A.)
| | - Sheau-Fang Hwang
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada; (H.Y.); (K.-F.C.); (R.F.-A.)
| | - Stephen E. Strelkov
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada; (H.Y.); (K.-F.C.); (R.F.-A.)
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9
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Dhakal U, Kim HS, Toomajian C. The landscape and predicted roles of structural variants in Fusarium graminearum genomes. G3 (BETHESDA, MD.) 2024; 14:jkae065. [PMID: 38546739 DOI: 10.1093/g3journal/jkae065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 02/22/2024] [Indexed: 06/06/2024]
Abstract
Structural rearrangements, such as inversions, translocations, duplications, and large insertions and deletions, are large-scale genomic variants that can play an important role in shaping phenotypic variation and in genome adaptation and evolution. We used chromosomal-level assemblies from eight Fusarium graminearum isolates to study structural variants and their role in fungal evolution. We generated the assemblies of four of these genomes after Oxford Nanopore sequencing. A total of 87 inversions, 159 translocations, 245 duplications, 58,489 insertions, and 34,102 deletions were detected. Regions of high recombination rate are associated with structural rearrangements, and a significant proportion of inversions, translocations, and duplications overlap with the repeat content of the genome, suggesting recombination and repeat elements are major factors in the origin of structural rearrangements in F. graminearum. Large insertions and deletions introduce presence-absence polymorphisms for many genes, including secondary metabolite biosynthesis cluster genes and predicted effectors genes. Translocation events were found to be shuffling predicted effector-rich regions of the genomes and are likely contributing to the gain and loss of effectors facilitated by recombination. Breakpoints of some structural rearrangements fall within coding sequences and are likely altering the protein products. Structural rearrangements in F. graminearum thus have an important role to play in shaping pathogen-host interactions and broader evolution through genome reorganization, the introduction of presence-absence polymorphisms, and changing protein products and gene regulation.
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Affiliation(s)
- Upasana Dhakal
- Department of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA
| | - Hye-Seon Kim
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, 1815 N University St., Peoria, IL 61604, USA
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10
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Aylward J, Wilson AM, Visagie CM, Spraker J, Barnes I, Buitendag C, Ceriani C, Del Mar Angel L, du Plessis D, Fuchs T, Gasser K, Krämer D, Li W, Munsamy K, Piso A, Price JL, Sonnekus B, Thomas C, van der Nest A, van Dijk A, van Heerden A, van Vuuren N, Yilmaz N, Duong TA, van der Merwe NA, Wingfield MJ, Wingfield BD. IMA Genome - F19 : A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras. IMA Fungus 2024; 15:12. [PMID: 38831329 PMCID: PMC11149380 DOI: 10.1186/s43008-024-00142-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/04/2024] [Indexed: 06/05/2024] Open
Abstract
The pace at which Next Generation Sequence data is being produced continues to accelerate as technology improves. As a result, such data are increasingly becoming accessible to biologists outside of the field of bioinformatics. In contrast, access to training in the methods of genome assembly and annotation are not growing at a similar rate. In this issue, we report on a Genome Assembly Workshop for Mycologists that was held at the Forestry and Agricultural Biotechnology Institute (FABI) at the University of Pretoria, South Africa and make available the 12 draft genome sequences emanating from the event. With the aim of making the process of genome assembly and annotation more accessible to biologists, we provide a step-by-step guide to both genome assembly and annotation, intended to encourage and empower mycologists to use genome data in their research.
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Affiliation(s)
- Janneke Aylward
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, Matieland, 7602, South Africa
| | - Andi M Wilson
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Cobus M Visagie
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Joseph Spraker
- Hexagon Bio, 1490 O'Brien Dr, Menlo Park, CA, 94025, USA
| | - Irene Barnes
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Carla Buitendag
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Callin Ceriani
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Lina Del Mar Angel
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Deanné du Plessis
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Taygen Fuchs
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Katharina Gasser
- Department of Crop Sciences, University of Natural Resources and Life Sciences (BOKU), Institute of Plant Protection, Konrad Lorenz-Strasse 24, Tulln an Der Donau, 3430, Vienna, Austria
| | - Daniella Krämer
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - WenWen Li
- Department of Plant and Soil Sciences, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Kiara Munsamy
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Anja Piso
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Jenna-Lee Price
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Byron Sonnekus
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Chanel Thomas
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Ariska van der Nest
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Alida van Dijk
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Alishia van Heerden
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Nicole van Vuuren
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Neriman Yilmaz
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Tuan A Duong
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Nicolaas A van der Merwe
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Michael J Wingfield
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa
| | - Brenda D Wingfield
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria, 0028, South Africa.
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11
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Qu Z, Ren X, Du Z, Hou J, Li Y, Yao Y, An Y. Fusarium mycotoxins: The major food contaminants. MLIFE 2024; 3:176-206. [PMID: 38948146 PMCID: PMC11211685 DOI: 10.1002/mlf2.12112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 11/23/2023] [Accepted: 12/13/2023] [Indexed: 07/02/2024]
Abstract
Mycotoxins, which are secondary metabolites produced by toxicogenic fungi, are natural food toxins that cause acute and chronic adverse reactions in humans and animals. The genus Fusarium is one of three major genera of mycotoxin-producing fungi. Trichothecenes, fumonisins, and zearalenone are the major Fusarium mycotoxins that occur worldwide. Fusarium mycotoxins have the potential to infiltrate the human food chain via contamination during crop production and food processing, eventually threatening human health. The occurrence and development of Fusarium mycotoxin contamination will change with climate change, especially with variations in temperature, precipitation, and carbon dioxide concentration. To address these challenges, researchers have built a series of effective models to forecast the occurrence of Fusarium mycotoxins and provide guidance for crop production. Fusarium mycotoxins frequently exist in food products at extremely low levels, thus necessitating the development of highly sensitive and reliable detection techniques. Numerous successful detection methods have been developed to meet the requirements of various situations, and an increasing number of methods are moving toward high-throughput features. Although Fusarium mycotoxins cannot be completely eliminated, numerous agronomic, chemical, physical, and biological methods can lower Fusarium mycotoxin contamination to safe levels during the preharvest and postharvest stages. These theoretical innovations and technological advances have the potential to facilitate the development of comprehensive strategies for effectively managing Fusarium mycotoxin contamination in the future.
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Affiliation(s)
- Zheng Qu
- Agro‐Environmental Protection InstituteMinistry of Agriculture and Rural AffairsTianjinChina
| | - Xianfeng Ren
- Institute of Quality Standard and Testing Technology for Agro‐ProductsShandong Academy of Agricultural SciencesJinanChina
| | - Zhaolin Du
- Agro‐Environmental Protection InstituteMinistry of Agriculture and Rural AffairsTianjinChina
| | - Jie Hou
- Agro‐Environmental Protection InstituteMinistry of Agriculture and Rural AffairsTianjinChina
| | - Ye Li
- Agro‐Environmental Protection InstituteMinistry of Agriculture and Rural AffairsTianjinChina
| | - Yanpo Yao
- Agro‐Environmental Protection InstituteMinistry of Agriculture and Rural AffairsTianjinChina
| | - Yi An
- Agro‐Environmental Protection InstituteMinistry of Agriculture and Rural AffairsTianjinChina
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12
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Maragos CM, Vaughan MM, McCormick SP. Monoclonal-Antibody-Based Immunoassays for the Mycotoxins NX-2 and NX-3 in Wheat. Toxins (Basel) 2024; 16:231. [PMID: 38787083 PMCID: PMC11126132 DOI: 10.3390/toxins16050231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2024] [Revised: 05/14/2024] [Accepted: 05/15/2024] [Indexed: 05/25/2024] Open
Abstract
The fungal infestation of crops can cause major economic losses. Toxins produced by the causative fungi (mycotoxins) represent a potential safety hazard to people and livestock consuming them. One such mycotoxin is deoxynivalenol (DON, also known as vomitoxin), a trichothecene associated with Fusarium Head Blight of wheat. DON is commonly found in cereal crops worldwide. A group of trichothecene mycotoxins closely related to DON, the NX toxins, have been reported to occur in the northeastern United States and southern Canada. While many commercial immunoassays are available to detect DON, there are no rapid screening assays for the NX toxins. We describe the development and isolation of three monoclonal antibodies (mAbs) specific towards two NX toxins: NX-2 and NX-3. The mAbs did not recognize DON or several other closely related trichothecenes. One of the mAbs was selected for development of an enzyme-linked immunosorbent assay (ELISA) for NX-2 and NX-3 in wheat. The dynamic ranges for the assay were 7.7 to 127 μg/kg for NX-2 and 59 μg/kg to 1540 μg/kg for NX-3 in wheat. Recoveries from spiked wheat averaged 84.4% for NX-2 and 99.3% for NX-3, with RSDs of 10.4% and 11.3%, respectively (n = 24). The results suggest that this assay can be used to screen for NX toxins in wheat at levels relevant to human food and animal feed safety.
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Affiliation(s)
- Chris M. Maragos
- Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, United States Department of Agriculture, 1815 N University, Peoria, IL 61604, USA; (M.M.V.); (S.P.M.)
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13
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Stałanowska K, Szablińska-Piernik J, Pszczółkowska A, Railean V, Wasicki M, Pomastowski P, Lahuta LB, Okorski A. Antifungal Properties of Bio-AgNPs against D. pinodes and F. avenaceum Infection of Pea ( Pisum sativum L.) Seedlings. Int J Mol Sci 2024; 25:4525. [PMID: 38674112 PMCID: PMC11050071 DOI: 10.3390/ijms25084525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Revised: 04/15/2024] [Accepted: 04/19/2024] [Indexed: 04/28/2024] Open
Abstract
Ascochyta blight and Fusarium root rot are the most serious fungal diseases of pea, caused by D. pinodes and F. avenaceum, respectively. Due to the lack of fully resistant cultivars, we proposed the use of biologically synthesized silver nanoparticles (bio-AgNPs) as a novel protecting agent. In this study, we evaluated the antifungal properties and effectiveness of bio-AgNPs, in in vitro (poisoned food technique; resazurin assay) and in vivo (seedlings infection) experiments, against D. pinodes and F. avenaceum. Moreover, the effects of diseases on changes in the seedlings' metabolic profiles were analyzed. The MIC for spores of both fungi was 125 mg/L, and bio-AgNPs at 200 mg/L most effectively inhibited the mycelium growth of D. pinodes and F. avenaceum (by 45 and 26%, respectively, measured on the 14th day of incubation). The treatment of seedlings with bio-AgNPs or fungicides before inoculation prevented the development of infection. Bio-AgNPs at concentrations of 200 mg/L for D. pinodes and 100 mg/L for F. avenaceum effectively inhibited infections' spread. The comparison of changes in polar metabolites' profiles revealed disturbances in carbon and nitrogen metabolism in pea seedlings by both pathogenic fungi. The involvement of bio-AgNPs in the mobilization of plant metabolism in response to fungal infection is also discussed.
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Affiliation(s)
- Karolina Stałanowska
- Department of Plant Physiology, Genetics and Biotechnology, University of Warmia and Mazury in Olsztyn, Oczapowskiego 1A, 10-719 Olsztyn, Poland; (K.S.); (L.B.L.)
| | - Joanna Szablińska-Piernik
- Department of Botany and Evolutionary Ecology, University of Warmia and Mazury in Olsztyn, Pl. Łódzki 1, 10-719 Olsztyn, Poland;
| | - Agnieszka Pszczółkowska
- Department of Entomology, Phytopathology and Molecular Diagnostics, University of Warmia and Mazury in Olsztyn, Pl. Łódzki 5, 10-727 Olsztyn, Poland;
| | - Viorica Railean
- Department of Infectious, Invasive Diseases and Veterinary Administration, Institute of Veterinary Medicine, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Toruń, Poland;
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4, 87-100 Toruń, Poland; (M.W.); (P.P.)
| | - Miłosz Wasicki
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4, 87-100 Toruń, Poland; (M.W.); (P.P.)
| | - Paweł Pomastowski
- Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4, 87-100 Toruń, Poland; (M.W.); (P.P.)
- Department of Inorganic and Coordination Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Toruń, Poland
| | - Lesław Bernard Lahuta
- Department of Plant Physiology, Genetics and Biotechnology, University of Warmia and Mazury in Olsztyn, Oczapowskiego 1A, 10-719 Olsztyn, Poland; (K.S.); (L.B.L.)
| | - Adam Okorski
- Department of Entomology, Phytopathology and Molecular Diagnostics, University of Warmia and Mazury in Olsztyn, Pl. Łódzki 5, 10-727 Olsztyn, Poland;
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14
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Josselin L, Proctor RH, Lippolis V, Cervellieri S, Hoylaerts J, De Clerck C, Fauconnier ML, Moretti A. Does alteration of fumonisin production in Fusarium verticillioides lead to volatolome variation? Food Chem 2024; 438:138004. [PMID: 37983995 DOI: 10.1016/j.foodchem.2023.138004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 11/13/2023] [Accepted: 11/13/2023] [Indexed: 11/22/2023]
Abstract
Fusarium verticillioides, a major fungal pathogen of maize, produces fumonisins, mycotoxins of global food safety concern. Control practices are needed to reduce the negative health and economic impacts of fumonisins. Therefore, we investigated volatile organic compounds (VOCs) emitted by fumonisin-producing (wild-type) and nonproducing (mutant) strains of F. verticillioides. VOC emissions were analyzed by gas chromatography-mass spectrometry following inoculation of maize kernels, and fumonisin accumulation was analyzed by high-performance liquid chromatography. Mutants emitted VOCs, including ethyl 3-methylbutanoate, that the wild type did not emit. In particular, ANOVA analysis showed significant differences between mutants and wild type for 4 VOCs which emission was correlated with absence of fumonisins. Exogenous ethyl 3-methylbutanoate reduced growth and fumonisin production in wild-type F. verticillioides, showing its potential in biocontrol. Together, our findings offer valuable insights into how mycotoxin production can impact VOC emissions from F. verticillioides and reveal a potential biocontrol strategy to reduce fumonisin contamination.
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Affiliation(s)
- Laurie Josselin
- Laboratory of Chemistry of Natural Molecules, Gembloux Agro-Bio Tech, Liege University, Passage des déportés 2, 5030 Gembloux, Belgium.
| | - Robert H Proctor
- Mycotoxin Prevention and Applied Microbiology Unit, United States Department of Agriculture (USDA), Agriculture Research Service, National Center for Agricultural Utilization Research, 1815 N. University St. Peoria, IL 61604, USA.
| | - Vincenzo Lippolis
- Institute of Sciences of Food Production, National Research Council of Italy, Via Amendola 122/o, 70126 Bari, Italy.
| | - Salvatore Cervellieri
- Institute of Sciences of Food Production, National Research Council of Italy, Via Amendola 122/o, 70126 Bari, Italy.
| | - Jeffrey Hoylaerts
- Laboratory of Chemistry of Natural Molecules, Gembloux Agro-Bio Tech, Liege University, Passage des déportés 2, 5030 Gembloux, Belgium.
| | - Caroline De Clerck
- AgricultureIsLife, Gembloux Agro-Bio Tech, Liege University, Passage des déportés 2, 5030 Gembloux, Belgium.
| | - Marie-Laure Fauconnier
- Laboratory of Chemistry of Natural Molecules, Gembloux Agro-Bio Tech, Liege University, Passage des déportés 2, 5030 Gembloux, Belgium.
| | - Antonio Moretti
- Institute of Sciences of Food Production, National Research Council of Italy, Via Amendola 122/o, 70126 Bari, Italy.
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15
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Atanasoff-Kardjalieff AK, Berger H, Steinert K, Janevska S, Ponts N, Humpf HU, Kalinina S, Studt-Reinhold L. Incorporation of the histone variant H2A.Z counteracts gene silencing mediated by H3K27 trimethylation in Fusarium fujikuroi. Epigenetics Chromatin 2024; 17:7. [PMID: 38509556 PMCID: PMC10953111 DOI: 10.1186/s13072-024-00532-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2023] [Accepted: 02/15/2024] [Indexed: 03/22/2024] Open
Abstract
BACKGROUND Fusarium fujikuroi is a pathogen of rice causing diverse disease symptoms such as 'bakanae' or stunting, most likely due to the production of various natural products (NPs) during infection. Fusaria have the genetic potential to synthesize a plethora of these compounds with often diverse bioactivity. The capability to synthesize NPs exceeds the number of those being produced by far, implying a gene regulatory network decisive to induce production. One such regulatory layer is the chromatin structure and chromatin-based modifications associated with it. One prominent example is the exchange of histones against histone variants such as the H2A variant H2A.Z. Though H2A.Z already is well studied in several model organisms, its regulatory functions are not well understood. Here, we used F. fujikuroi as a model to explore the role of the prominent histone variant FfH2A.Z in gene expression within euchromatin and facultative heterochromatin. RESULTS Through the combination of diverse '-omics' methods, we show the global distribution of FfH2A.Z and analyze putative crosstalks between the histone variant and two prominent histone marks, i.e., H3K4me3 and H3K27me3, important for active gene transcription and silencing, respectively. We demonstrate that, if FfH2A.Z is positioned at the + 1-nucleosome, it poises chromatin for gene transcription, also within facultative heterochromatin. Lastly, functional characterization of FfH2A.Z overexpression and depletion mutants revealed that FfH2A.Z is important for wild type-like fungal development and secondary metabolism. CONCLUSION In this study, we show that the histone variant FfH2A.Z is a mark of positive gene transcription and acts independently of the chromatin state most likely through the stabilization of the + 1-nucleosome. Furthermore, we demonstrate that FfH2A.Z depletion does not influence the establishment of both H3K27me3 and H3K4me3, thus indicating no crosstalk between FfH2A.Z and both histone marks. These results highlight the manifold functions of the histone variant FfH2A.Z in the phytopathogen F. fujikuroi, which are distinct regarding gene transcription and crosstalk with the two prominent histone marks H3K27me3 and H3K4me3, as proposed for other model organisms.
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Affiliation(s)
- Anna K Atanasoff-Kardjalieff
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz Strasse 24, Tulln an der Donau, 3430, Austria
| | - Harald Berger
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz Strasse 24, Tulln an der Donau, 3430, Austria
| | - Katharina Steinert
- Institute of Food Chemistry, University of Münster, Corrensstraße 45, 48149, Münster, Germany
| | - Slavica Janevska
- (Epi-)Genetic Regulation of Fungal Virulence, Leibniz Institute for Natural Product Research and Infection Biology-Hans Knöll Institute, 07745, Jena, Germany
| | - Nadia Ponts
- INRAE, UR1264 Mycology and Food Safety (MycSA), Villenave d'Ornon, 33882, France
| | - Hans-Ulrich Humpf
- Institute of Food Chemistry, University of Münster, Corrensstraße 45, 48149, Münster, Germany
| | - Svetlana Kalinina
- Institute of Food Chemistry, University of Münster, Corrensstraße 45, 48149, Münster, Germany
| | - Lena Studt-Reinhold
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz Strasse 24, Tulln an der Donau, 3430, Austria.
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16
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Alijani Mamaghani N, Masiello M, Somma S, Moretti A, Saremi H, Haidukowski M, Altomare C. Endophytic Alternaria and Fusarium species associated to potato plants ( Solanum tuberosum L.) in Iran and their capability to produce regulated and emerging mycotoxins. Heliyon 2024; 10:e26385. [PMID: 38434378 PMCID: PMC10907534 DOI: 10.1016/j.heliyon.2024.e26385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2023] [Revised: 01/19/2024] [Accepted: 02/12/2024] [Indexed: 03/05/2024] Open
Abstract
Endophytic fungi live inside virtually every plant species, without causing any apparent disease or damage to the host. Nevertheless, under particular conditions, mutualistic lifestyle of endophytes may change to pathogenic. In this study, the biodiversity of Alternaria and Fusarium species, the two most abundant endophytic fungi isolated from healthy potato plants in two climatically different regions of Iran, Ardebil in the north-west and Kerman in the south-east, was investigated. Seventy-five Fusarium strains and 83 Alternaria strains were molecularly characterized by multi-locus gene sequencing. Alternaria strains were characterized by the sequences of gpd and caM gene fragments and the phylogenetic tree was resolved in 3 well-separated clades. Seventy-three strains were included in the clade A, referred as Alternaria section, 6 strains were included in clade B, referred as Ulocladioides section, and 4 strains were included in clade C, referred as Infectoriae section. Fusarium strains, identified by sequencing the translation elongation factor 1α (tef1), β-tubulin (tub2) and internal transcribed spacer (ITS) genomic regions, were assigned to 13 species, viz. F. brachygibosum, F. clavum, F. equiseti, F. flocciferum, F. incarnatum, F. nirenbergiae, F. nygamai, F. oxysporum, F. proliferatum, F. redolens, F. sambucinum, F. solani and F. thapsinum. Twenty-six selected strains, representative of F. equiseti, F. nirenbergiae, F. oxysporum, F. nygamai, F. proliferatum, and F. sambucinum, were also tested for production of the mycotoxins deoxynivalenol (DON), nivalenol (NIV), diacetoxyscirpenol (DAS), T-2 toxin (T-2), beauvericin (BEA), enniatins (ENNs), fumonisins (FBs), fusaric acid (FA) and moniliformin (MON). None of the tested strains produced trichothecene toxins (DON, NIV, DAS and T-2). Two out of 2 F. equiseti isolates, 1/6 F. oxysporum, 1/3 F. proliferatum, and 1/9 F. nygamai did not produce any of the tested toxins; the rest of strains produced one or more BEA, ENNs, FBs, FA and MON toxins. The most toxigenic strain, F. nygamai ITEM-19012, produced the highest quantities of FBs (7946, 4693 and 4333 μg/g of B1, B2, and B3 respectively), along with the highest quantities of both BEA (4190 μg/g) and MON (538 μg/g). These findings suggest that contamination of potato tubers with mycotoxins in the field or at post-harvest, due to a change in lifestyle of endophytic microflora, should be carefully considered and furtherly investigated.
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Affiliation(s)
- Nasim Alijani Mamaghani
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, 77871-31587, Karaj, Iran
| | - Mario Masiello
- Institute of Sciences of Food Production, National Research Council, 70126, Bari, Italy
| | - Stefania Somma
- Institute of Sciences of Food Production, National Research Council, 70126, Bari, Italy
| | - Antonio Moretti
- Institute of Sciences of Food Production, National Research Council, 70126, Bari, Italy
| | - Hossein Saremi
- Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, 77871-31587, Karaj, Iran
| | - Miriam Haidukowski
- Institute of Sciences of Food Production, National Research Council, 70126, Bari, Italy
| | - Claudio Altomare
- Institute of Sciences of Food Production, National Research Council, 70126, Bari, Italy
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17
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Price JL, Visagie CM, Meyer H, Yilmaz N. Fungal Species and Mycotoxins Associated with Maize Ear Rots Collected from the Eastern Cape in South Africa. Toxins (Basel) 2024; 16:95. [PMID: 38393173 PMCID: PMC10891880 DOI: 10.3390/toxins16020095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 01/29/2024] [Accepted: 02/04/2024] [Indexed: 02/25/2024] Open
Abstract
Maize production in South Africa is concentrated in its central provinces. The Eastern Cape contributes less than 1% of total production, but is steadily increasing its production and has been identified as a priority region for future growth. In this study, we surveyed ear rots at maize farms in the Eastern Cape, and mycotoxins were determined to be present in collected samples. Fungal isolations were made from mouldy ears and species identified using morphology and DNA sequences. Cladosporium, Diplodia, Fusarium and Gibberella ear rots were observed during field work, and of these, we collected 78 samples and isolated 83 fungal strains. Fusarium was identified from Fusarium ear rot (FER) and Gibberella ear rot (GER) and Stenocarpella from Diplodia ear rot (DER) samples, respectively. Using LC-MS/MS multi-mycotoxin analysis, it was revealed that 83% of the collected samples contained mycotoxins, and 17% contained no mycotoxins. Fifty percent of samples contained multiple mycotoxins (deoxynivalenol, 15-acetyl-deoxynivalenol, diplodiatoxin and zearalenone) and 33% contained a single mycotoxin. Fusarium verticillioides was not isolated and fumonisins not detected during this survey. This study revealed that ear rots in the Eastern Cape are caused by a wide range of species that may produce various mycotoxins.
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Affiliation(s)
- Jenna-Lee Price
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0028, South Africa; (J.-L.P.); (C.M.V.)
| | - Cobus Meyer Visagie
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0028, South Africa; (J.-L.P.); (C.M.V.)
| | - Hannalien Meyer
- Southern African Grain Laboratory (SAGL), Grain Building-Agri Hub Office Park, 477 Witherite Street, The Willows, Pretoria 0040, South Africa;
| | - Neriman Yilmaz
- Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0028, South Africa; (J.-L.P.); (C.M.V.)
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18
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Perochon A, Doohan FM. Trichothecenes and Fumonisins: Key Players in Fusarium-Cereal Ecosystem Interactions. Toxins (Basel) 2024; 16:90. [PMID: 38393168 PMCID: PMC10893083 DOI: 10.3390/toxins16020090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 01/19/2024] [Accepted: 01/30/2024] [Indexed: 02/25/2024] Open
Abstract
Fusarium fungi produce a diverse array of mycotoxic metabolites during the pathogenesis of cereals. Some, such as the trichothecenes and fumonisins, are phytotoxic, acting as non-proteinaceous effectors that facilitate disease development in cereals. Over the last few decades, we have gained some depth of understanding as to how trichothecenes and fumonisins interact with plant cells and how plants deploy mycotoxin detoxification and resistance strategies to defend themselves against the producer fungi. The cereal-mycotoxin interaction is part of a co-evolutionary dance between Fusarium and cereals, as evidenced by a trichothecene-responsive, taxonomically restricted, cereal gene competing with a fungal effector protein and enhancing tolerance to the trichothecene and resistance to DON-producing F. graminearum. But the binary fungal-plant interaction is part of a bigger ecosystem wherein other microbes and insects have been shown to interact with fungal mycotoxins, directly or indirectly through host plants. We are only beginning to unravel the extent to which trichothecenes, fumonisins and other mycotoxins play a role in fungal-ecosystem interactions. We now have tools to determine how, when and where mycotoxins impact and are impacted by the microbiome and microfauna. As more mycotoxins are described, research into their individual and synergistic toxicity and their interactions with the crop ecosystem will give insights into how we can holistically breed for and cultivate healthy crops.
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Affiliation(s)
| | - Fiona M. Doohan
- UCD School of Biology and Environmental Science, UCD Earth Institute and UCD Institute of Food and Health, University College Dublin, D04 V1W8 Dublin, Ireland
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Studt-Reinhold L, Atanasoff-Kardjalieff AK, Berger H, Petersen C, Bachleitner S, Sulyok M, Fischle A, Humpf HU, Kalinina S, Søndergaard TE. H3K27me3 is vital for fungal development and secondary metabolite gene silencing, and substitutes for the loss of H3K9me3 in the plant pathogen Fusarium proliferatum. PLoS Genet 2024; 20:e1011075. [PMID: 38166117 PMCID: PMC10786395 DOI: 10.1371/journal.pgen.1011075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 01/12/2024] [Accepted: 11/20/2023] [Indexed: 01/04/2024] Open
Abstract
Facultative heterochromatin marked by histone H3 lysine 27 trimethylation (H3K27me3) is an important regulatory layer involved in secondary metabolite (SM) gene silencing and crucial for fungal development in the genus Fusarium. While this histone mark is essential in some (e.g., the rice pathogen Fusarium fujikuroi), it appears dispensable in other fusaria. Here, we show that deletion of FpKMT6 is detrimental but not lethal in the plant pathogen Fusarium proliferatum, a member of the Fusarium fujikuroi species complex (FFSC). Loss of FpKmt6 results in aberrant growth, and expression of a large set of previously H3K27me3-silenced genes is accompanied by increased H3K27 acetylation (H3K27ac) and an altered H3K36me3 pattern. Next, H3K9me3 patterns are affected in Δfpkmt6, indicating crosstalk between both heterochromatic marks that became even more obvious in a strain deleted for FpKMT1 encoding the H3K9-specific histone methyltransferase. In Δfpkmt1, all H3K9me3 marks present in the wild-type strain are replaced by H3K27me3, a finding that may explain the subtle phenotype of the Δfpkmt1 strain which stands in marked contrast to other filamentous fungi. A large proportion of SM-encoding genes is allocated with H3K27me3 in the wild-type strain and loss of H3K27me3 results in elevated expression of 49% of them. Interestingly, genes involved in the biosynthesis of the phytohormones gibberellins (GA) are among the most upregulated genes in Δfpkmt6. Although several FFSC members harbor GA biosynthetic genes, its production is largely restricted to F. fujikuroi, possibly outlining the distinct lifestyles of these notorious plant pathogens. We show that H3K27me3 is involved in GA gene silencing in F. proliferatum and at least one additional FFSC member, and thus, may serve as a regulatory layer for gene silencing under non-favoring conditions.
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Affiliation(s)
- Lena Studt-Reinhold
- University of Natural Resources and Life Sciences, Vienna, Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, Tulln an der Donau, Austria
| | - Anna K. Atanasoff-Kardjalieff
- University of Natural Resources and Life Sciences, Vienna, Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, Tulln an der Donau, Austria
| | - Harald Berger
- University of Natural Resources and Life Sciences, Vienna, Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, Tulln an der Donau, Austria
| | - Celine Petersen
- Aalborg University, Department of Chemistry and Bioscience, Aalborg, Denmark
| | - Simone Bachleitner
- University of Natural Resources and Life Sciences, Vienna, Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, Tulln an der Donau, Austria
| | - Michael Sulyok
- University of Natural Resources and Life Sciences, Vienna, Department of Agrobiotechnology, Institute of Bioanalytics and Agro-Metabolomics, Tulln an der Donau, Austria
| | - Alica Fischle
- University of Münster, Institute of Food Chemistry, Münster, Germany
| | - Hans-Ulrich Humpf
- University of Münster, Institute of Food Chemistry, Münster, Germany
| | - Svetlana Kalinina
- University of Münster, Institute of Food Chemistry, Münster, Germany
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20
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Ansari MA, Al Abbasi FA, Hosawi S, Baig MR, Alhayyani S, Kumar V, Asar TO, Anwar F. Mass Spectrometry-based Detection of Mycotoxins in Imported Meat and their Perspective Role on Myocardial Apoptosis. Curr Med Chem 2024; 31:3834-3843. [PMID: 37303172 DOI: 10.2174/0929867330666230609100707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 03/29/2023] [Accepted: 04/14/2023] [Indexed: 06/13/2023]
Abstract
BACKGROUND Fungal mycotoxins are the secondary metabolities and are harmful to plants, animals, and humans. Common aflatoxins are present and isolated from feeds and food comprises aflatoxins B1, B2, G1, and G2. Public health threats or risk of foodborne disease posed by mycotoxins, especially the export or import of such meat products are of primary concern. This study aims to determine the concentration of the level of aflatoxins B1, B2, G1, G2 M1, and M2 respectively in imported burger meat. METHODS The present work is designed to select and collect the various samples of meat products from different sources and subjected to mycotoxin analysis by LCMS/MS. Random selection was made on sites of burger meat was found to be on sale. RESULTS Simultaneous presence of several mycotoxins in the same sample of imported meat under the set conditions of LCMS/MS detected 26% (18 samples) was positive for various mycotoxins. The most frequent mycotoxins proportion in the analyzed samples was aflatoxin B1 (50%) followed by aflatoxin G1 (44%), aflatoxin G2 (38.8%), aflatoxin B2 (33%) respectively which were least among all with 16.66 and 11.11%. DISCUSSION A positive correlation is deduced between CVD and mycotoxin present in burger meat. Isolated mycotoxins initiate death receptor-mediated apoptosis, death receptor-mediated necrosis, mitochondrial-mediated apoptosis, mitochondrial-mediated necrosis, and immunogenic cell deaths through various pathways that can damage the cardiac tissues. CONCLUSION The presence of these toxins in such samples is just the tip of the iceberg. Further investigation is necessary for complete clarifications of toxins on human health especially on CVD and other related metabolic complications.
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Affiliation(s)
- Maged Al Ansari
- Department of Biochemistry, Faculty of Sciences, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia
| | - Fahad A Al Abbasi
- Department of Biochemistry, Faculty of Sciences, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia
| | - Salman Hosawi
- Department of Biochemistry, Faculty of Sciences, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia
- King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia
| | | | - Sultan Alhayyani
- Department of Chemistry, College of Sciences & Arts, King Abdulaziz University, Rabigh, King Abdulaziz University, Kingdom of Saudi Arabia
| | - Vikas Kumar
- Natural Product Drug Discovery Laboratory, Department of Pharmaceutical Sciences, Shalom Institute of Health and Allied Sciences, SHUATS, Naini, Prayagraj, India
| | - Turky Omar Asar
- Department of Biology, College of Science and Arts at Alkamil, University of Jeddah, Jeddah, Saudi Arabia
| | - Firoz Anwar
- Department of Biochemistry, Faculty of Sciences, King Abdulaziz University, Jeddah, Kingdom of Saudi Arabia
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21
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Krska T, Twaruschek K, Valente N, Mitterbauer R, Moll D, Wiesenberger G, Berthiller F, Adam G. Development of a fumonisin-sensitive Saccharomyces cerevisiae indicator strain and utilization for activity testing of candidate detoxification genes. Appl Environ Microbiol 2023; 89:e0121123. [PMID: 38054733 PMCID: PMC10746191 DOI: 10.1128/aem.01211-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 10/20/2023] [Indexed: 12/07/2023] Open
Abstract
IMPORTANCE Fumonisins can cause diseases in animals and humans consuming Fusarium-contaminated food or feed. The search for microbes capable of fumonisin degradation, or for enzymes that can detoxify fumonisins, currently relies primarily on chemical detection methods. Our constructed fumonisin B1-sensitive yeast strain can be used to phenotypically detect detoxification activity and should be useful in screening for novel fumonisin resistance genes and to elucidate fumonisin metabolism and resistance mechanisms in fungi and plants, and thereby, in the long term, help to mitigate the threat of fumonisins in feed and food.
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Affiliation(s)
- Tamara Krska
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
- Austrian Competence Centre for Feed and Food Quality, Safety & Innovation, FFoQSI GmbH, Tulln, Austria
| | - Krisztian Twaruschek
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
- Austrian Competence Centre for Feed and Food Quality, Safety & Innovation, FFoQSI GmbH, Tulln, Austria
| | - Nina Valente
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
| | - Rudolf Mitterbauer
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
| | - Dieter Moll
- dsm-firmenich ANH Research Center Tulln, Tulln, Austria
| | - Gerlinde Wiesenberger
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
- Department of Agrobiotechnology, Institute of Bioanalytics and Agro-Metabolomics, IFA-Tulln, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
| | - Franz Berthiller
- Department of Agrobiotechnology, Institute of Bioanalytics and Agro-Metabolomics, IFA-Tulln, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
| | - Gerhard Adam
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna (BOKU), Tulln, Austria
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22
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Todorović I, Moënne-Loccoz Y, Raičević V, Jovičić-Petrović J, Muller D. Microbial diversity in soils suppressive to Fusarium diseases. FRONTIERS IN PLANT SCIENCE 2023; 14:1228749. [PMID: 38111879 PMCID: PMC10726057 DOI: 10.3389/fpls.2023.1228749] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 11/10/2023] [Indexed: 12/20/2023]
Abstract
Fusarium species are cosmopolitan soil phytopathogens from the division Ascomycota, which produce mycotoxins and cause significant economic losses of crop plants. However, soils suppressive to Fusarium diseases are known to occur, and recent knowledge on microbial diversity in these soils has shed new lights on phytoprotection effects. In this review, we synthesize current knowledge on soils suppressive to Fusarium diseases and the role of their rhizosphere microbiota in phytoprotection. This is an important issue, as disease does not develop significantly in suppressive soils even though pathogenic Fusarium and susceptible host plant are present, and weather conditions are suitable for disease. Soils suppressive to Fusarium diseases are documented in different regions of the world. They contain biocontrol microorganisms, which act by inducing plants' resistance to the pathogen, competing with or inhibiting the pathogen, or parasitizing the pathogen. In particular, some of the Bacillus, Pseudomonas, Paenibacillus and Streptomyces species are involved in plant protection from Fusarium diseases. Besides specific bacterial populations involved in disease suppression, next-generation sequencing and ecological networks have largely contributed to the understanding of microbial communities in soils suppressive or not to Fusarium diseases, revealing different microbial community patterns and differences for a notable number of taxa, according to the Fusarium pathosystem, the host plant and the origin of the soil. Agricultural practices can significantly influence soil suppressiveness to Fusarium diseases by influencing soil microbiota ecology. Research on microbial modes of action and diversity in suppressive soils should help guide the development of effective farming practices for Fusarium disease management in sustainable agriculture.
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Affiliation(s)
- Irena Todorović
- Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR5557 Ecologie Microbienne, Villeurbanne, France
- University of Belgrade, Faculty of Agriculture, Belgrade, Serbia
| | - Yvan Moënne-Loccoz
- Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR5557 Ecologie Microbienne, Villeurbanne, France
| | - Vera Raičević
- University of Belgrade, Faculty of Agriculture, Belgrade, Serbia
| | | | - Daniel Muller
- Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR5557 Ecologie Microbienne, Villeurbanne, France
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23
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Chulze SN, Tittlemier S, Torres AM. Editorial: Fusarium species as plant and human pathogens, mycotoxin producers, and biotechnological importance. FRONTIERS IN FUNGAL BIOLOGY 2023; 4:1320198. [PMID: 38033377 PMCID: PMC10682813 DOI: 10.3389/ffunb.2023.1320198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 11/06/2023] [Indexed: 12/02/2023]
Affiliation(s)
- Sofia N. Chulze
- Research Institute on Mycology and Mycotoxicology (IMICO) National University of Rio Cuarto(UNRC) National Technological and Research Council from Argentina (CONICET), Rio Cuarto, Córdoba, Argentina
| | - Sheryl Tittlemier
- Canadian Grain Commission, Grain Research Laboratory, Winnipeg, MB, Canada
| | - Adriana M. Torres
- Research Institute on Mycology and Mycotoxicology (IMICO) National University of Rio Cuarto(UNRC) National Technological and Research Council from Argentina (CONICET), Rio Cuarto, Córdoba, Argentina
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24
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da Silva LAGA, Piacentini KC, Caramês ETDS, Silva NCC, Wawroszová S, Běláková S, Rocha LDO. Quantitative PCR (qPCR) for estimating the presence of Fusarium and its mycotoxins in barley grains. Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2023; 40:1369-1387. [PMID: 37640447 DOI: 10.1080/19440049.2023.2250474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 08/14/2023] [Accepted: 08/15/2023] [Indexed: 08/31/2023]
Abstract
Members within the Fusarium sambucinum species complex (FSAMSC) are able to produce mycotoxins, such as deoxynivalenol (DON), nivalenol (NIV), zearalenone (ZEN) and enniatins (ENNs) in food products. Consequently, alternative methods for assessing the levels of these mycotoxins are relevant for quick decision-making. In this context, qPCR based on key mycotoxin biosynthetic genes could aid in determining the toxigenic fungal biomass, and could therefore infer mycotoxin content. The aim of this study was to verify the use of qPCR as a technique for estimating DON, NIV, ENNs and ZEN, as well as Fusarium graminearum sensu lato (s.l.) and F. poae in barley grains. For this purpose, 53 barley samples were selected for mycobiota, mycotoxin and qPCR analyses. ENNs were the most frequent mycotoxins, followed by DON, ZEN and NIV. 83% of the samples were contaminated by F. graminearum s.l. and 51% by F. poae. Pearson correlation analysis showed significant correlations for TRI12/15-ADON with DON, ESYN1 with ENNs, TRI12/15-ADON and ZEB1 with F. graminearum s.l., as well as ESYN1 and TRI12/NIV with F. poae. Based on the results, qPCR could be useful for the assessment of Fusarium presence, and therefore, provide an estimation of its mycotoxins' levels from the same sample.
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Affiliation(s)
| | - Karim Cristina Piacentini
- Department of Food Science and Nutrition (DECAN), State University of Campinas (UNICAMP), Campinas, Brazil
| | | | | | - Simona Wawroszová
- Regional Department Brno, Central Institute for Supervising and Testing in Agriculture, National Reference Laboratory, Brno, Czech Republic
| | - Sylvie Běláková
- Malting Institute Brno, Research Institute of Brewing and Malting, Brno, Czech Republic
| | - Liliana de Oliveira Rocha
- Department of Food Science and Nutrition (DECAN), State University of Campinas (UNICAMP), Campinas, Brazil
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25
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Laraba I, Ward TJ, Cuperlovic-Culf M, Azimi H, Xi P, McCormick SP, Hay WT, Hao G, Vaughan MM. Insights into the Aggressiveness of the Emerging North American Population 3 (NA3) of Fusarium graminearum. PLANT DISEASE 2023; 107:2687-2700. [PMID: 36774561 DOI: 10.1094/pdis-11-22-2698-re] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
In the United States and Canada, Fusarium graminearum (Fg) is the predominant etiological agent of Fusarium head blight (FHB), an economically devastating fungal disease of wheat and other small grains. Besides yield losses, FHB leads to grain contamination with trichothecene mycotoxins that are harmful to plant, human, and livestock health. Three genetic North American populations of Fg, differing in their predominant trichothecene chemotype (i.e., NA1/15ADON, NA2/3ADON, and NA3/NX-2), have been identified. To improve our understanding of the newly discovered population NA3 and how population-level diversity influences FHB outcomes, we inoculated heads of the moderately resistant wheat cultivar Alsen with 15 representative strains from each population and evaluated disease progression, mycotoxin accumulation, and mycotoxin production per unit Fg biomass. Additionally, we evaluated population-specific differences in induced host defense responses. The NA3 population was significantly less aggressive than the NA1 and NA2 populations but posed a similar mycotoxigenic potential. Multiomics analyses revealed patterns in mycotoxin production per unit Fg biomass, expression of Fg aggressiveness-associated genes, and host defense responses that did not always correlate with the NA3-specific severity difference. Our comparative disease assay of NA3/NX-2 and admixed NA1/NX-2 strains indicated that the reduced NA3 aggressiveness is not due solely to the NX-2 chemotype. Notably, the NA1 and NA2 populations did not show a significant advantage over NA3 in perithecia production, a fitness-related trait. Together, our data highlight that the disease outcomes were not due to mycotoxin production or host defense alone, indicating that other virulence factors and/or host defense mechanisms are likely involved.
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Affiliation(s)
- Imane Laraba
- Oak Ridge Institute for Science and Education fellow, Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, USDA, Peoria, IL 61604, U.S.A
| | - Todd J Ward
- Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, USDA, Peoria, IL 61604, U.S.A
| | | | - Hilda Azimi
- Digital Technologies Research Centre, National Research Council Canada, Ottawa, K1A 0R6, Canada
| | - Pengcheng Xi
- Digital Technologies Research Centre, National Research Council Canada, Ottawa, K1A 0R6, Canada
| | - Susan P McCormick
- Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, USDA, Peoria, IL 61604, U.S.A
| | - William T Hay
- Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, USDA, Peoria, IL 61604, U.S.A
| | - Guixia Hao
- Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, USDA, Peoria, IL 61604, U.S.A
| | - Martha M Vaughan
- Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Agricultural Research Service, USDA, Peoria, IL 61604, U.S.A
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26
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Aloui A, Salah-Abbès JB, Zinedine A, Meile JC, Riba A, Durand N, Montet D, Abbès S, Brabet C. Occurrence of pre- and postharvest multi-mycotoxins in durum wheat grains collected in 2020 and 2021 in two climatic regions of Tunisia. FOOD ADDITIVES & CONTAMINANTS. PART B, SURVEILLANCE 2023; 16:274-287. [PMID: 37387604 DOI: 10.1080/19393210.2023.2219996] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 05/27/2023] [Indexed: 07/01/2023]
Abstract
Twenty two mycotoxins in 136 durum wheat collected from Tunisia in 2020 and 2021 were investigated. Mycotoxins were analyzed by UHPLCMS/MS. In 2020, 60.9% of the samples were contaminated with Aflatoxin B1 (AFB1) and/or enniatin. Whereas, in 2021, 34.4% were contaminated by enniatins. AFB1 was detected only in 2020, in the continental region (6/46) and all samples exceeded limits. AFB1 was detected in stored wheat (24-37.8 µg/kg) but also in pre-stored wheat (17-28.4 µg/kg) and in one sample collected in the field (21 µg/kg). Enniatin A1, enniatin B and enniatin B1 were detected in wheat collected in the field (30-7684 µg/kg), pre-storage (42-1266 µg/kg) and storage (65.8-498.2 µg/kg) from the continental region also, in sample collected in pre-storage (31.3-1410 µg/kg) and at harvest (48- 1060 µg/kg). Samples had a water activity less than 0.7 and moisture content ranged between 09-14%. AFB1 level represent a health risk to the Tunisian consumers.
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Affiliation(s)
- Amina Aloui
- Laboratory of Genetic, Biodiversity and Bio-Resources Valorisation, University of Monastir, Monastir, Tunisia
- CIRAD, UMR Qualisud, Montpellier University, Montpellier, France
| | - Jalila Ben Salah-Abbès
- Laboratory of Genetic, Biodiversity and Bio-Resources Valorisation, University of Monastir, Monastir, Tunisia
| | - Abdellah Zinedine
- Faculty of Sciences, BIOMARE Laboratory, Applied Microbiology and Biotechnology, Chouaib Doukkali University, El Jadida, Morocco
| | - Jean Christophe Meile
- CIRAD, UMR Qualisud, Montpellier, France
- CIRAD, UMR Qualisud, CIRAD, Institut Agro, IRD, Qualisud, Université de Montpellier, Avignon Université, Université de La Réunion, Montpellier, France
| | - Amar Riba
- Laboratoire de Biologie des Systèmes Microbiens (LBSM), Ecole Normale Supérieure de Kouba, Kouba, Algeria
| | - Noel Durand
- CIRAD, UMR Qualisud, Montpellier, France
- CIRAD, UMR Qualisud, CIRAD, Institut Agro, IRD, Qualisud, Université de Montpellier, Avignon Université, Université de La Réunion, Montpellier, France
| | - Didier Montet
- CIRAD, UMR Qualisud, Montpellier, France
- CIRAD, UMR Qualisud, CIRAD, Institut Agro, IRD, Qualisud, Université de Montpellier, Avignon Université, Université de La Réunion, Montpellier, France
| | - Samir Abbès
- Laboratory of Genetic, Biodiversity and Bio-Resources Valorisation, University of Monastir, Monastir, Tunisia
- Higher Institute of Biotechnology of Béja, University of Jendouba, Jendouba, Tunisia
| | - Catherine Brabet
- CIRAD, UMR Qualisud, Montpellier, France
- CIRAD, UMR Qualisud, CIRAD, Institut Agro, IRD, Qualisud, Université de Montpellier, Avignon Université, Université de La Réunion, Montpellier, France
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27
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Usman S, Ge X, Xu Y, Qin Q, Xie J, Wang B, Jin C, Fang W. Loss of Phosphomannose Isomerase Impairs Growth, Perturbs Cell Wall Integrity, and Reduces Virulence of Fusarium oxysporum f. sp. cubense on Banana Plants. J Fungi (Basel) 2023; 9:jof9040478. [PMID: 37108932 PMCID: PMC10145770 DOI: 10.3390/jof9040478] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2023] [Revised: 04/08/2023] [Accepted: 04/14/2023] [Indexed: 04/29/2023] Open
Abstract
Fusarium oxysporum f. sp. cubense tropical race 4 (Foc TR4) causes Fusarium wilt of banana, necessitating urgent measures to control this disease. However, the molecular mechanisms underlying Foc TR4 virulence remain elusive. Phosphomannose isomerase is a key enzyme involved in the biosynthesis of GDP mannose, an important precursor of fungal cell walls. In this study, two phosphomannose isomerases were identified in the Foc TR4 genome, of which only Focpmi1 was highly expressed throughout all developmental stages. Generated null mutants in Foc TR4 showed that only the ΔFocpmi1 mutant required exogenous mannose for growth, indicating that Focpmi1 is the key enzyme involved in GDP mannose biosynthesis. The Focpmi1 deficient strain was unable to grow without exogenous mannose and exhibited impaired growth under stress conditions. The mutant had reduced chitin content in its cell wall, rendering it vulnerable to cell wall stresses. Transcriptomic analysis revealed up- and down-regulation of several genes involved in host cell wall degradation and physiological processes due to the loss of Focpmi1. Furthermore, Focpmi1 was also found to be crucial for Foc TR4 infection and virulence, making it a potential antifungal target to address the threats posed by Foc TR4.
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Affiliation(s)
- Sayed Usman
- College of Life Science and Technology, Guangxi University, Nanning 530004, China
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China
| | - Xinwei Ge
- College of Life Science and Technology, Guangxi University, Nanning 530004, China
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China
| | - Yueqiang Xu
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Qijian Qin
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China
| | - Jin Xie
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China
| | - Bin Wang
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China
| | - Cheng Jin
- College of Life Science and Technology, Guangxi University, Nanning 530004, China
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China
| | - Wenxia Fang
- College of Life Science and Technology, Guangxi University, Nanning 530004, China
- Institute of Biological Sciences and Technology, Guangxi Academy of Sciences, Nanning 530007, China
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28
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Chakroun Y, Snoussi Y, Chehimi MM, Abderrabba M, Savoie JM, Oueslati S. Encapsulation of Ammoides pusila Essential Oil into Mesoporous Silica Particles for the Enhancement of Their Activity against Fusarium avenaceum and Its Enniatins Production. Molecules 2023; 28:molecules28073194. [PMID: 37049956 PMCID: PMC10096032 DOI: 10.3390/molecules28073194] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/30/2023] [Accepted: 03/31/2023] [Indexed: 04/14/2023] Open
Abstract
Essential oils (EOs) that have antifungal activity and mycotoxin reduction ability are candidates to develop bioactive alternatives and environmentally friendly treatment against Fusarium species in cereals. However, their practical use is facing limitations such as high volatility, UV sensitivity, and fast oxidation. Encapsulation techniques are supposed to provide protection to the EOs and control their release into the environment. Ammoides pusilla essential oil (AP-EO) proved to be an efficient inhibitor of Fusarium avenaceum growth and its enniatins (ENNs) production. In the present work, AP-EO was encapsulated, using the impregnation method, into mesoporous silica particles (MSPs) with narrow slit pores (average diameter = 3.1 nm) and coated with chitosan. In contact assays using an agar medium, the antifungal activity of AP-EO at 0.1 µL mL-1 improved by three times when encapsulated into MSPs without chitosan and the ENNs production was significantly inhibited both in coated and non-coated MSPs. Controls of MSPs also inhibited the ENNs production without affecting the mycelial growth. In fumigation experiments assessing the activity of the EO volatile compounds, encapsulation into MSPs improved significantly both the antifungal activity and ENNs inhibition. Moreover, coating with chitosan stopped the release of EO. Thus, encapsulation of an EO into MSPs improving its antifungal and antimycotoxin properties is a promising tool for the formulation of a natural fungicide that could be used in the agriculture or food industry to protect plant or food products from the contamination by toxigenic fungi such as Fusarium sp. and their potential mycotoxins.
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Affiliation(s)
- Yasmine Chakroun
- INRAE, UR1264 MycSA, CS2032, 33882 Villenave d'Ornon, France
- IPEST, Laboratory Molecules Materials and Applications (LMMA), University of Carthage, La Marsa, Tunis 2070, Tunisia
| | - Youssef Snoussi
- IPEST, Laboratory Molecules Materials and Applications (LMMA), University of Carthage, La Marsa, Tunis 2070, Tunisia
- CNRS, UMR 7182 ICMPE, 2-8 Rue Henri Dunant, 94320 Thiais, France
| | - Mohamed M Chehimi
- CNRS, UMR 7182 ICMPE, 2-8 Rue Henri Dunant, 94320 Thiais, France
- ITODYS, UMR 7086, Université Paris Cité & CNRS, 75013 Paris, France
| | - Manef Abderrabba
- IPEST, Laboratory Molecules Materials and Applications (LMMA), University of Carthage, La Marsa, Tunis 2070, Tunisia
| | | | - Souheib Oueslati
- IPEST, Laboratory Molecules Materials and Applications (LMMA), University of Carthage, La Marsa, Tunis 2070, Tunisia
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Maximo MF, Fill TP, Rodrigues ML. A Close Look into the Composition and Functions of Fungal Extracellular Vesicles Produced by Phytopathogens. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2023; 36:228-234. [PMID: 36847651 DOI: 10.1094/mpmi-09-22-0184-fi] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Fungal extracellular vesicles (EVs) were first described in human pathogens. In a few years, the field of fungal EVs evolved to include several studies with plant pathogens, in which extracellularly released vesicles play fundamental biological roles. In recent years, solid progress has been made in the determination of the composition of EVs produced by phytopathogens. In addition, EV biomarkers are now known in fungal plant pathogens, and the production of EVs during plant infection has been demonstrated. In this manuscript, we review the recent progress in the field of fungal EVs, with a focus on plant pathogens. [Formula: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 "No Rights Reserved" license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2023.
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Affiliation(s)
- Marina F Maximo
- Instituto de Química, Universidade de Campinas, São Paulo, Brazil
| | - Taícia P Fill
- Instituto de Química, Universidade de Campinas, São Paulo, Brazil
| | - Marcio L Rodrigues
- Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil
- Instituto de Microbiologia Paulo de Góes (IMPG), Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
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Wang LS, Zhang Y, Zhang MQ, Gong DC, Mei YZ, Dai CC. Engineered Phomopsis liquidambaris with Fhb1 and Fhb7 Enhances Resistance to Fusarium graminearum in Wheat. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:1391-1404. [PMID: 36625777 DOI: 10.1021/acs.jafc.2c06742] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Fusarium head blight is one of the most serious diseases caused by Fusarium graminearum in wheat. Here, we developed a new way to prevent and control Fusarium head blight by introducing the resistance genes Fhb1 and Fhb7 into the endophytic fungus Phomopsis liquidambaris, named PL-Fhb1 and PL-Fhb7, respectively, which could colonize wheat. The wheat seedlings were preinoculated with PL-Fhb1 and PL-Fhb7 to enhance the resistance against deoxynivalenol (DON) and PL-Fhb1 and PL-Fhb7 inhibited the growth of F. graminearum by 73% and 49%, respectively. The incidence rate of diseased spikes decreased to 35.2% and 45.4%, and the corresponding DON levels for wheat grains decreased from 13.2 to 1.79 μg/g and from 13.2 μg/g to 0.39 μg/g when the leaves were preinoculated with PL-Fhb1 and PL-Fhb7 after overwintering, respectively. The incidence rates of diseased spikes decreased to 25.7% and 34.7%, and the DON levels for wheat grains decreased from 17.48 μg/g to 1.23 μg/g and from 17.48 μg/g to 0 μg/g when the wheat flowers were inoculated with PL-Fhb1 and PL-Fhb7, and the wheat flowers were subsequently infected with F. graminearum, respectively. It was confirmed that DON was transformed into DON-glutathione (GSH) by PL-Fhb7 using high-performance liquid chromatography-mass spectrometry (HPLC-MS). However, PL-Fhb1 may have increased plant immunity and enhanced the resistance to F. graminearum. This study indicates that engineered endophytes can improve the resistance to Fusarium head blight and presents a new method for the biological control of Fusarium head blight.
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Affiliation(s)
- Long-Shen Wang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023, Jiangsu, China
| | - Ya Zhang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023, Jiangsu, China
| | - Meng-Qian Zhang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023, Jiangsu, China
| | - Da-Chun Gong
- China Key Laboratory of Light Industry Functional Yeast, Three Gorges University, Yichang 443000, Hubei, China
| | - Yan-Zhen Mei
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023, Jiangsu, China
| | - Chuan-Chao Dai
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing 210023, Jiangsu, China
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31
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Diversity, Ecological Characteristics and Identification of Some Problematic Phytopathogenic Fusarium in Soil: A Review. DIVERSITY 2023. [DOI: 10.3390/d15010049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
The genus Fusarium includes many pathogenic species causing a wide range of plant diseases that lead to high economic losses. In this review, we describe how the Fusarium taxonomy has changed with the development of microbiological methods. We specify the ecological traits of this genus and the methods of its identification in soils, particularly the detection of phytopathogenic representatives of Fusarium and the mycotoxins produced by them. The negative effects of soil-borne phytopathogenic Fusarium on agricultural plants and current methods for its control are discussed. Due to the high complexity and polymorphism of Fusarium species, integrated approaches for the risk assessment of Fusarium diseases are necessary.
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Proctor RH, Hao G, Kim HS, Whitaker BK, Laraba I, Vaughan MM, McCormick SP. A Novel Trichothecene Toxin Phenotype Associated with Horizontal Gene Transfer and a Change in Gene Function in Fusarium. Toxins (Basel) 2022; 15:12. [PMID: 36668832 PMCID: PMC9864338 DOI: 10.3390/toxins15010012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/10/2022] [Accepted: 12/22/2022] [Indexed: 12/28/2022] Open
Abstract
Fusarium trichothecenes are among the mycotoxins of most concern to food and feed safety. Production of these mycotoxins and presence of the trichothecene biosynthetic gene (TRI) cluster have been confirmed in only two multispecies lineages of Fusarium: the Fusarium incarnatum-equiseti (Incarnatum) and F. sambucinum (Sambucinum) species complexes. Here, we identified and characterized a TRI cluster in a species that has not been formally described and is represented by Fusarium sp. NRRL 66739. This fungus is reported to be a member of a third Fusarium lineage: the F. buharicum species complex. Cultures of NRRL 66739 accumulated only two trichothecenes, 7-hydroxyisotrichodermin and 7-hydroxyisotrichodermol. Although these are not novel trichothecenes, the production profile of NRRL 66739 is novel, because in previous reports 7-hydroxyisotrichodermin and 7-hydroxyisotrichodermol were components of mixtures of 6-8 trichothecenes produced by several Fusarium species in Sambucinum. Heterologous expression analysis indicated that the TRI13 gene in NRRL 66739 confers trichothecene 7-hydroxylation. This contrasts the trichothecene 4-hydroxylation function of TRI13 in other Fusarium species. Phylogenetic analyses suggest that NRRL 66739 acquired the TRI cluster via horizontal gene transfer from a close relative of Incarnatum and Sambucinum. These findings provide insights into evolutionary processes that have shaped the distribution of trichothecene production among Fusarium species and the structural diversity of the toxins.
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Affiliation(s)
- Robert H. Proctor
- Mycotoxin Prevention and Applied Microbiology, National Center for Agricultural Utilization Research, Agricultural Research Service, US Department of Agriculture, 1815 N University St., Peoria, IL 61604, USA
| | - Guixia Hao
- Mycotoxin Prevention and Applied Microbiology, National Center for Agricultural Utilization Research, Agricultural Research Service, US Department of Agriculture, 1815 N University St., Peoria, IL 61604, USA
| | - Hye-Seon Kim
- Mycotoxin Prevention and Applied Microbiology, National Center for Agricultural Utilization Research, Agricultural Research Service, US Department of Agriculture, 1815 N University St., Peoria, IL 61604, USA
| | - Briana K. Whitaker
- Mycotoxin Prevention and Applied Microbiology, National Center for Agricultural Utilization Research, Agricultural Research Service, US Department of Agriculture, 1815 N University St., Peoria, IL 61604, USA
| | - Imane Laraba
- Oak Ridge Institute for Science and Education, Mycotoxin Prevention and Applied Microbiology, National Center for Agricultural Utilization Research, Agricultural Research Service, US Department of Agriculture, Peoria, IL 61604, USA
| | - Martha M. Vaughan
- Mycotoxin Prevention and Applied Microbiology, National Center for Agricultural Utilization Research, Agricultural Research Service, US Department of Agriculture, 1815 N University St., Peoria, IL 61604, USA
| | - Susan P. McCormick
- Mycotoxin Prevention and Applied Microbiology, National Center for Agricultural Utilization Research, Agricultural Research Service, US Department of Agriculture, 1815 N University St., Peoria, IL 61604, USA
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Wang W, Liang X, Li Y, Wang P, Keller NP. Genetic Regulation of Mycotoxin Biosynthesis. J Fungi (Basel) 2022; 9:jof9010021. [PMID: 36675842 PMCID: PMC9861139 DOI: 10.3390/jof9010021] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 12/20/2022] [Accepted: 12/20/2022] [Indexed: 12/24/2022] Open
Abstract
Mycotoxin contamination in food poses health hazards to humans. Current methods of controlling mycotoxins still have limitations and more effective approaches are needed. During the past decades of years, variable environmental factors have been tested for their influence on mycotoxin production leading to elucidation of a complex regulatory network involved in mycotoxin biosynthesis. These regulators are putative targets for screening molecules that could inhibit mycotoxin synthesis. Here, we summarize the regulatory mechanisms of hierarchical regulators, including pathway-specific regulators, global regulators and epigenetic regulators, on the production of the most critical mycotoxins (aflatoxins, patulin, citrinin, trichothecenes and fumonisins). Future studies on regulation of mycotoxins will provide valuable knowledge for exploring novel methods to inhibit mycotoxin biosynthesis in a more efficient way.
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Affiliation(s)
- Wenjie Wang
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou 310018, China
- Institute of Food Biotechnology, Zhejiang Gongshang University, Hangzhou 310018, China
- Correspondence: (W.W.); (N.P.K.)
| | - Xinle Liang
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou 310018, China
- Institute of Food Biotechnology, Zhejiang Gongshang University, Hangzhou 310018, China
| | - Yudong Li
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou 310018, China
- Institute of Food Biotechnology, Zhejiang Gongshang University, Hangzhou 310018, China
| | - Pinmei Wang
- Ocean College, Zhejiang University, Zhoushan 316021, China
| | - Nancy P. Keller
- Department of Medical Microbiology and Immunology, University of Wisconsin-Madison, Madison, WI 53706, USA
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA
- Correspondence: (W.W.); (N.P.K.)
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Collum TD, Evans B, Gottschalk C. First Report of Fusarium avenaceum Causing Postharvest Decay of European Pear in Mid-Atlantic United States. PLANT DISEASE 2022; 107:2230. [PMID: 36399005 DOI: 10.1094/pdis-08-22-1784-pdn] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Fruit losses due to postharvest decay caused by several fungal species is a major challenge for pear production (Sardella et al. 2016). In December 2021, a European pear (Pyrus communis L.) 'Dawn' with brown, circular, watery, and sunken lesions was observed in cold storage at the USDA Appalachian Fruit Research Station in Kearneysville, West Virginia. Only 1 of 14 'Dawn' pears examined in cold storage had the described disease symptoms. The fruit was surface sterilized, and symptomatic tissue was transferred to potato dextrose agar (PDA) and incubated at 25°C under continuous light. The isolate was hyphal tip purified and propagated on PDA plates at 25°C. The colonies grew an average of 8 mm/day and produced fluffy white aerial mycelium and pigmented rings of golden yellow which then darkened to pink with a dark pink on the reverse. The isolate was also cultured in liquid basal medium with carboxymethyl cellulose (Moura et al. 2020) for 7 days at 25°C to promote macroconidia formation. Macroconidia were slightly falcate with a tapering apical cell, usually 2 to 4 septate, and on average 16.8 µm long by 2.8 µm wide. The isolate was identified as Fusarium spp. based on morphology. Identity of the isolate was confirmed through sequencing of the ITS and TEF1 gene region (Stielow et al. 2015). The ITS and TEF1 sequences were deposited in GenBank (OP007197 and OP007198). BLAST analysis of the ITS amplicon identified multiple Fusarium spp. with 100% identity and 100% query coverage including F. avenaceum KJ562378. BLAST analysis of the TEF1 amplicon showed 99% identity and 99-100% query coverage with F. avenaceum isolates KM189442 and MK512754. Organic Bartlett pears were surface sanitized with a 1% aqueous chlorine solution, rinsed with sterile water and dried in a laminar flow hood. Fruit were then wounded with a sterile nail (4 mm diameter x 4 mm depth) and inoculated with a 4 mm mycelial plug taken from a 7- to 10-day old culture on PDA and wrapped with Parafilm. Plugs taken from sterile PDA were used as a control. Inoculated fruit were stored at 25°C in fruit trays in plastic bins for 7 days. Six fruit composed a replicate, and the experiment was repeated for a total of two replications. Lesions developed within 48 hours and expanded to an average of 28.5 mm by day 7. No lesions were observed on control fruit. Symptoms observed on inoculated pears were the same as the decay observed on the original pear obtained from cold storage. Fungal colonies isolated from the lesions and cultured on PDA morphologically resembled the original isolate from the infected pear. In 2014, F. avenaceum was first reported in the United States to cause post-harvest decay of apples in Pennsylvania (Kou et al. 2014). In the Netherlands, F. avenaceum has been reported to cause postharvest decay of 'Conference' pears but was observed at low frequencies (1-5%) in packing-house surveys (Wenneker et al. 2016). Fusarium spp. was also recently found on European pears in Southern Oregon (KC and Rasmussen 2020). F. avenaceum can produce mycotoxins which is a concern for fruit processing (Munkvold et al. 2021). Monitoring for this pathogen to prevent losses and mycotoxin contamination of processed fruit products will be import for consumer safety. To our knowledge, this is the first report of F. avenaceum causing postharvest decay of European pear in the Mid-Atlantic region of the United States.
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Affiliation(s)
- Tamara D Collum
- USDA ARS, 17123, Appalachian Fruit Research Station, Kearneysville, West Virginia, United States;
| | - Breyn Evans
- USDA ARS, 17123, Appalachian Fruit Research Station, Kearneysville, West Virginia, United States;
| | - Christopher Gottschalk
- USDA ARS, 17123, Appalachian Fruit Research Station, Kearneysville, West Virginia, United States;
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Pascale M, Logrieco AF, Lippolis V, De Girolamo A, Cervellieri S, Lattanzio VMT, Ciasca B, Vega A, Reichel M, Graeber M, Slettengren K. Industrial-Scale Cleaning Solutions for the Reduction of Fusarium Toxins in Maize. Toxins (Basel) 2022; 14:toxins14110728. [PMID: 36355978 PMCID: PMC9695466 DOI: 10.3390/toxins14110728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 10/15/2022] [Accepted: 10/21/2022] [Indexed: 01/26/2023] Open
Abstract
Grain cleaning is the most effective non-destructive post-harvest mitigation strategy to reduce high levels of mycotoxins on account of the removal of mold-infected grains and grain fractions with high mycotoxin content. In this study, the reduction in the concentration of some co-occurring Fusarium toxins in maize, namely deoxynivalenol (DON), zearalenone (ZEA) and fumonisins B1 and B2 (FBs), was evaluated at an industrial-scale level by mechanical removal (sieving and density separation) of dust, coarse, small, broken, shriveled and low-density kernels and/or optical sorting of defected kernels. Samples were dynamically collected according to the Commission Regulation No. 401/2006 along the entire process line. Mycotoxin analyses of water-slurry aggregate samples were performed by validated LC methods. Depending on the contamination levels in raw incoming maize, the overall reduction rates ranged from 36 to 67% for DON, from 67 to 87% for ZEA and from 27 to 67% for FBs. High levels of DON, ZEA and FBs were found in all rejected fractions with values, respectively, up to 3030%, 1510% and 2680%, compared to their content in uncleaned maize. Results showed that grain cleaning equipment based on mechanical and or optical sorting technologies can provide a significant reduction in Fusarium toxin contamination in maize.
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Affiliation(s)
- Michelangelo Pascale
- Institute of Food Sciences (ISA), National Research Council of Italy (CNR), 83100 Avellino, Italy
- Correspondence: (M.P.); (K.S.)
| | - Antonio F. Logrieco
- Institute of Sciences of Food Production (ISPA), National Research Council of Italy (CNR), 70126 Bari, Italy
| | - Vincenzo Lippolis
- Institute of Sciences of Food Production (ISPA), National Research Council of Italy (CNR), 70126 Bari, Italy
| | - Annalisa De Girolamo
- Institute of Sciences of Food Production (ISPA), National Research Council of Italy (CNR), 70126 Bari, Italy
| | - Salvatore Cervellieri
- Institute of Sciences of Food Production (ISPA), National Research Council of Italy (CNR), 70126 Bari, Italy
| | - Veronica M. T. Lattanzio
- Institute of Sciences of Food Production (ISPA), National Research Council of Italy (CNR), 70126 Bari, Italy
| | - Biancamaria Ciasca
- Institute of Sciences of Food Production (ISPA), National Research Council of Italy (CNR), 70126 Bari, Italy
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Seidl B, Rehak K, Bueschl C, Parich A, Buathong R, Wolf B, Doppler M, Mitterbauer R, Adam G, Khewkhom N, Wiesenberger G, Schuhmacher R. Gramiketides, Novel Polyketide Derivatives of Fusarium graminearum, Are Produced during the Infection of Wheat. J Fungi (Basel) 2022; 8:1030. [PMID: 36294594 PMCID: PMC9605136 DOI: 10.3390/jof8101030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 09/23/2022] [Accepted: 09/26/2022] [Indexed: 11/29/2022] Open
Abstract
The plant pathogen Fusarium graminearum is a proficient producer of mycotoxins and other in part still unknown secondary metabolites, some of which might act as virulence factors on wheat. The PKS15 gene is expressed only in planta, so far hampering the identification of an associated metabolite. Here we combined the activation of silent gene clusters by chromatin manipulation (kmt6) with blocking the metabolic flow into the competing biosynthesis of the two major mycotoxins deoxynivalenol and zearalenone. Using an untargeted metabolomics approach, two closely related metabolites were found in triple mutants (kmt6 tri5 pks4,13) deficient in production of the major mycotoxins deoxynivalenol and zearalenone, but not in strains with an additional deletion in PKS15 (kmt6 tri5 pks4,13 pks15). Characterization of the metabolites, by LC-HRMS/MS in combination with a stable isotope-assisted tracer approach, revealed that they are likely hybrid polyketides comprising a polyketide part consisting of malonate-derived acetate units and a structurally deviating part. We propose the names gramiketide A and B for the two metabolites. In a biological experiment, both gramiketides were formed during infection of wheat ears with wild-type but not with pks15 mutants. The formation of the two gramiketides during infection correlated with that of the well-known virulence factor deoxynivalenol, suggesting that they might play a role in virulence.
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Affiliation(s)
- Bernhard Seidl
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430 Tulln, Austria
| | - Katrin Rehak
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 24, 3430 Tulln, Austria
| | - Christoph Bueschl
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430 Tulln, Austria
| | - Alexandra Parich
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430 Tulln, Austria
| | - Raveevatoo Buathong
- Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Ngamwongwan Road, Lat Yao, Chatuchak, Bangkok 10900, Thailand
| | - Bernhard Wolf
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430 Tulln, Austria
| | - Maria Doppler
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430 Tulln, Austria
- Core Facility Bioactive Molecules: Screening and Analysis, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430 Tulln, Austria
| | - Rudolf Mitterbauer
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 24, 3430 Tulln, Austria
| | - Gerhard Adam
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 24, 3430 Tulln, Austria
| | - Netnapis Khewkhom
- Department of Plant Pathology, Faculty of Agriculture, Kasetsart University, Ngamwongwan Road, Lat Yao, Chatuchak, Bangkok 10900, Thailand
| | - Gerlinde Wiesenberger
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 24, 3430 Tulln, Austria
| | - Rainer Schuhmacher
- Department of Agrobiotechnology IFA-Tulln, Institute of Bioanalytics and Agro-Metabolomics, University of Natural Resources and Life Sciences Vienna (BOKU), Konrad-Lorenz-Str. 20, 3430 Tulln, Austria
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Abi Saad C, Masiello M, Habib W, Gerges E, Sanzani SM, Logrieco AF, Moretti A, Somma S. Diversity of Fusarium Species Isolated from Symptomatic Plants Belonging to a Wide Range of Agri-Food and Ornamental Crops in Lebanon. J Fungi (Basel) 2022; 8:897. [PMID: 36135622 PMCID: PMC9502176 DOI: 10.3390/jof8090897] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2022] [Revised: 08/12/2022] [Accepted: 08/22/2022] [Indexed: 12/02/2022] Open
Abstract
Lebanon is a small Mediterranean country with different pedoclimatic conditions that allow the growth of both temperate and tropical plants. Currently, few studies are available on the occurrence and diversity of Fusarium species on Lebanese crops. A wide population of Fusarium strains was isolated from different symptomatic plants in the last 10 years. In the present investigation, a set of 134 representative strains were molecularly identified by sequencing the translation elongation factor, used in Fusarium as a barcoding gene. Great variability was observed, since the strains were grouped into nine different Fusarium Species Complexes (SCs). Fusarium oxysporum SC and Fusarium solani SC were the most frequent (53% and 24%, respectively). Members of important mycotoxigenic SCs were also detected: F. fujikuroi SC (7%), F. sambucinum SC (5%), F. incarnatum-equiseti SC (3%), and F. tricinctum SC (4%). Two strains belonging to F. lateritium SC, a single strain belonging to F. burgessii SC, and a single strain belonging to F. redolens SC were also detected. This paper reports, for the first time, the occurrence of several Fusarium species on Lebanese host plants. The clear picture of the Fusarium species distribution provided in this study can pose a basis for both a better understanding of the potential phytopathological and toxicological risks and planning future Fusarium management strategies in Lebanon.
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Affiliation(s)
- Charlie Abi Saad
- Institute of Science of Food Production-ISPA, Research National Council—CNR, Via Amendola 122/O, 70126 Bari, Italy
- International Center for Advanced Mediterranean Agronomic Studies-CIHEAM Bari, Via Ceglie 9, Valenzano, 70010 Bari, Italy
| | - Mario Masiello
- Institute of Science of Food Production-ISPA, Research National Council—CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - Wassim Habib
- Centro di Ricerca, Sperimentazione e Formazione in Agricoltura “Basile Caramia”-CRSFA, Via Cisternino 281, Locorotondo, 70010 Bari, Italy
- Laboratory of Mycology, Department of Plant Protection, Lebanese Agricultural Research Institute, Fanar 1202, Lebanon
| | - Elvis Gerges
- Laboratory of Mycology, Department of Plant Protection, Lebanese Agricultural Research Institute, Fanar 1202, Lebanon
| | - Simona Marianna Sanzani
- International Center for Advanced Mediterranean Agronomic Studies-CIHEAM Bari, Via Ceglie 9, Valenzano, 70010 Bari, Italy
- Dipartimento di Scienze del Suolo, della Pianta e degli Alimenti, Università degli Studi di Bari Aldo Moro, Via Amendola 165/A, 70126 Bari, Italy
| | - Antonio Francesco Logrieco
- Institute of Science of Food Production-ISPA, Research National Council—CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - Antonio Moretti
- Institute of Science of Food Production-ISPA, Research National Council—CNR, Via Amendola 122/O, 70126 Bari, Italy
| | - Stefania Somma
- Institute of Science of Food Production-ISPA, Research National Council—CNR, Via Amendola 122/O, 70126 Bari, Italy
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Wang Q, Song R, Fan S, Coleman JJ, Xu X, Hu X. Diversity of Fusarium community assembly shapes mycotoxin accumulation of diseased wheat heads. Mol Ecol 2022; 32:2504-2518. [PMID: 35844052 DOI: 10.1111/mec.16618] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 05/18/2022] [Accepted: 07/08/2022] [Indexed: 10/17/2022]
Abstract
Fusarium head blight (FHB) is a major disease worldwide on cultivated cereals, caused by several Fusarium species. FHB can cause not only yield reduction but also accumulation of mycotoxins in the grain contaminating the food supply. Much of the earlier research has focused on Fusarium pathogenesis, conditions required for disease development and toxin accumulation, and FHB management. However, the Fusarium community composition within the micro-habitat of a single diseased wheat head in the field has had limited investigation. Similarly, the relationship between the Fusarium community structure and mycotoxin accumulation within diseased heads remains unclear. In the present study, we investigated the Fusarium community in diseased heads sampled from different geographical sites in China. Several sites in Shandong province formed a transitional region which contained highly variable profiles of Fusarium OTUs, where a single diseased head could contain more than 10 Fusarium OTUs. Mycotoxin accumulation was independent of geographical properties, however, deoxynivalenol, 15-acetyldeoxynivalenol and zearalenone concentrations showed a significant negative correlation with Fusarium diversity on diseased heads while a significant positive correlation between nivalenol concentration and Fusarium diversity was observed. Taken together, the Fusarium OTU diversity within diseased heads in the field significantly influences mycotoxin accumulation, providing an important point to consider in FHB disease management and mycotoxin research.
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Affiliation(s)
- Qiang Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China
| | - Rui Song
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China
| | - Sanhong Fan
- College of Life Science, Northwest A&F University, Yangling, Shaanxi, China
| | - Jeffrey J Coleman
- Department of Entomology and Plant Pathology, Auburn University, Auburn, Alabama, USA
| | - Xiangming Xu
- NIAB East Malling Research (EMR), West Malling, Kent, UK
| | - Xiaoping Hu
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi, China
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Fusarium abutilonis and F. guadeloupense, two novel species in the Fusarium buharicum clade supported by multilocus molecular phylogenetic analyses. Mycologia 2022; 114:682-696. [PMID: 35679164 DOI: 10.1080/00275514.2022.2071563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
This study was conducted to elucidate evolutionary relationships and species diversity within the Fusarium buharicum species complex (FBSC). We also evaluate the potential of these species to produce mycotoxins and other bioactive secondary metabolites. Maximum likelihood and maximum parsimony analyses of sequences from portions of four marker loci (ITS rDNA, TEF1, RPB1, and RPB2) and the combined 4495 bp data set support recognition of seven genealogically exclusive species within the FBSC. Two of the three newly discovered species are formally described as F. abutilonis and F. guadeloupense based on concordance of gene genealogies and morphological data. Fusarium abutilonis induces leaf, stem, and root lesions on several weedy Malvaceae (Abution theophrasti, Anoda cristata, Sida spinosa) and a fabaceous host (Senna obtusifolia) in North America and also was recovered from soil in New Caledonia. Fusarium abutilonis, together with its unnamed sister, Fusarium sp. ex common marsh mallow (Hibiscus moscheutos) from Washington state, and F. buharicum pathogenic to cotton and kenaf in Russia and Iran, respectively, were strongly supported as a clade of malvaceous pathogens. The four other species of the FBSC are not known to be phytopathogenic; however, F. guadeloupense was isolated from human blood in Texas and soil in Guadeloupe. The former isolate is unique because it represents the only known case of a fusarial infection disseminated hematogenously by a species lacking microconidia and the only documented fusariosis caused by a member of the FBSC. Whole genome sequence data and extracts of cracked maize kernel cultures were analyzed to assess the potential of FBSC isolates to produce mycotoxins, pigments, and phytohormones.
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Kelman M, Renaud J, Baines D, Yeung KC, Miller J, Sumarah M. Mycotoxin determination in fungal contaminated Canadian silage toxic to dairy cows and goats. WORLD MYCOTOXIN J 2022. [DOI: 10.3920/wmj2021.2764] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Silage has become a key component of year-long animal feed in Canada and parts of northern Europe. It provides several advantages to farmers over traditional feed components, such as increased digestibility, higher nutrient content and preservation of the forages to meet seasonal feeding demands. Some ensiled materials can contain toxic fungal metabolites resulting from ‘in field’ contamination. In addition, when improperly stored or exposed to air during the feedout stage, silage is highly susceptible to aerobic spoilage by yeasts and filamentous fungi resulting in lower nutrient value and further mycotoxin contamination. In this study, silage samples were collected from 25 Canadian dairy goat and cattle farms where animals experienced feed-related health issues. Twenty-six unique fungal species were isolated from these samples, with the majority being Penicillium. High resolution liquid chromatography tandem mass spectrometry (HRLC-MS/MS) was used to identify a total of 125 known mycotoxins and fungal secondary metabolites from these silage samples, many of which were not produced by the 26 isolated filamentous fungi grown in agar cultures. Various mycotoxins resulting from preharvest contamination were detected, including ergot alkaloids, fumonisins and trichothecenes, some in high concentrations. Toxins produced after harvest included roquefortine C, citrinin and penitrem A. This study reinforces the need for farmers to implement best management practices to minimise fungal contamination and the resulting mycotoxin deposition in their crop and stored feed to maintain animal health.
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Affiliation(s)
- M.J. Kelman
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, Ontario N5V 4T3, Canada
| | - J.B. Renaud
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, Ontario N5V 4T3, Canada
| | - D. Baines
- Lethbridge Research and Development Centre, Agriculture and Agri-Food Canada, 5403 1st Avenue South Lethbridge, Alberta T1J 4B1, Canada
| | - K.K.-C. Yeung
- Department of Chemistry, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 5B7, Canada
- Department of Biochemistry, University of Western Ontario, 1151 Richmond Street, London, Ontario N6A 5C1, Canada
| | - J.D Miller
- Department of Chemistry, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada
| | - M.W. Sumarah
- London Research and Development Centre, Agriculture and Agri-Food Canada, 1391 Sandford Street, London, Ontario N5V 4T3, Canada
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Smaoui S, Agriopoulou S, D'Amore T, Tavares L, Mousavi Khaneghah A. The control of Fusarium growth and decontamination of produced mycotoxins by lactic acid bacteria. Crit Rev Food Sci Nutr 2022; 63:11125-11152. [PMID: 35708071 DOI: 10.1080/10408398.2022.2087594] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Global crop and food contamination with mycotoxins are one of the primary worldwide concerns, while there are several restrictions regarding approaching conventional physical and chemical mycotoxins decontamination methods due to nutrition loss, sensory attribute reduction in foods, chemical residual, inconvenient operation, high cost of equipment, and high energy consumption of some methods. In this regard, the overarching challenges of mycotoxin contamination in food and food crops require the development of biological decontamination strategies. Using certain lactic acid bacteria (LAB) as generally recognized safe (GRAS) compounds is one of the most effective alternatives due to their potential to release antifungal metabolites against various fungal factors species. This review highlights the potential applications of LAB as biodetoxificant agents and summarizes their decontamination activities against Fusarium growth and Fusarium mycotoxins released into food/feed. Firstly, the occurrence of Fusarium and the instrumental and bioanalytical methods for the analysis of mycotoxins were in-depth discussed. Upgraded knowledge on the biosynthesis pathway of mycotoxins produced by Fusarium offers new insightful ideas clarifying the function of these secondary metabolites. Moreover, the characterization of LAB metabolites and their impact on the decontamination of the mycotoxin from Fusarium, besides the main mechanisms of mycotoxin decontamination, are covered. While the thematic growth inhibition of Fusarium and decontamination of their mycotoxin by LAB is very complex, approaching certain lactic acid bacteria (LAB) is worth deeper investigations.
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Affiliation(s)
- Slim Smaoui
- Laboratory of Microbial, Enzymatic Biotechnology and Biomolecules (LBMEB), Center of Biotechnology of Sfax, University of Sfax-Tunisia, Sfax, Tunisia
| | - Sofia Agriopoulou
- Department of Food Science and Technology, University of the Peloponnese, Antikalamos, Kalamata, Greece
| | - Teresa D'Amore
- Chemistry Department, Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata (IZSPB), Foggia, Italy
| | - Loleny Tavares
- Institute of Food Science and Technology, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, CEP, Brazil
| | - Amin Mousavi Khaneghah
- Department of Fruit and Vegetable Product Technology, Prof. Wacław Dąbrowski Institute of Agricultural and Food Biotechnology - State Research Institute, Warsaw, Poland
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Laraba I, Busman M, Geiser DM, O'Donnell K. Phylogenetic Diversity and Mycotoxin Potential of Emergent Phytopathogens Within the Fusarium tricinctum Species Complex. PHYTOPATHOLOGY 2022; 112:1284-1298. [PMID: 34989594 DOI: 10.1094/phyto-09-21-0394-r] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Recent studies on multiple continents indicate members of the Fusarium tricinctum species complex (FTSC) are emerging as prevalent pathogens of small-grain cereals, pulses, and other economically important crops. These understudied fusaria produce structurally diverse mycotoxins, among which enniatins (ENNs) and moniliformin (MON) are the most frequent and of greatest concern to food and feed safety. Herein a large survey of fusaria in the Fusarium Research Center and Agricultural Research Service culture collections was undertaken to assess species diversity and mycotoxin potential within the FTSC. A 151-strain collection originating from diverse hosts and substrates from different agroclimatic regions throughout the world was selected from 460 FTSC strains to represent the breadth of FTSC phylogenetic diversity. Evolutionary relationships inferred from a five-locus dataset, using maximum likelihood and parsimony, resolved the 151 strains as 24 phylogenetically distinct species, including nine that are new to science. Of the five genes analyzed, nearly full-length phosphate permease sequences contained the most phylogenetically informative characters, establishing its suitability for species-level phylogenetics within the FTSC. Fifteen of the species produced ENNs, MON, the sphingosine analog 2-amino-14,16-dimethyloctadecan-3-ol (AOD), and the toxic pigment aurofusarin (AUR) on a cracked corn kernel substrate. Interestingly, the five earliest diverging species in the FTSC phylogeny (i.e., F. iranicum, F. flocciferum, F. torulosum, and Fusarium spp. FTSC 8 and 24) failed to produce AOD and MON, but synthesized ENNs and/or AUR. Moreover, our reassessment of nine published phylogenetic studies on the FTSC identified 11 additional novel taxa, suggesting this complex comprises at least 36 species.
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Affiliation(s)
- Imane Laraba
- ORISE Fellow, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit (MPM), Peoria, IL 61604
| | - Mark Busman
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit (MPM), Peoria, IL 61604
| | - David M Geiser
- Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802
| | - Kerry O'Donnell
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit (MPM), Peoria, IL 61604
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O'Donnell K, Whitaker BK, Laraba I, Proctor RH, Brown DW, Broders K, Kim HS, McCormick SP, Busman M, Aoki T, Torres-Cruz TJ, Geiser DM. DNA Sequence-Based Identification of Fusarium: A Work in Progress. PLANT DISEASE 2022; 106:1597-1609. [PMID: 34907805 DOI: 10.1094/pdis-09-21-2035-sr] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Accurate species-level identification of an etiological agent is crucial for disease diagnosis and management because knowing the agent's identity connects it with what is known about its host range, geographic distribution, and toxin production potential. This is particularly true in publishing peer-reviewed disease reports, where imprecise and/or incorrect identifications weaken the public knowledge base. This can be a daunting task for phytopathologists and other applied biologists that need to identify Fusarium in particular, because published and ongoing multilocus molecular systematic studies have highlighted several confounding issues. Paramount among these are: (i) this agriculturally and clinically important genus is currently estimated to comprise more than 400 phylogenetically distinct species (i.e., phylospecies), with more than 80% of these discovered within the past 25 years; (ii) approximately one-third of the phylospecies have not been formally described; (iii) morphology alone is inadequate to distinguish most of these species from one another; and (iv) the current rapid discovery of novel fusaria from pathogen surveys and accompanying impact on the taxonomic landscape is expected to continue well into the foreseeable future. To address the critical need for accurate pathogen identification, our research groups are focused on populating two web-accessible databases (FUSARIUM-ID v.3.0 and the nonredundant National Center for Biotechnology Information nucleotide collection that includes GenBank) with portions of three phylogenetically informative genes (i.e., TEF1, RPB1, and RPB2) that resolve at or near the species level in every Fusarium species. The objectives of this Special Report, and its companion in this issue (Torres-Cruz et al. 2022), are to provide a progress report on our efforts to populate these databases and to outline a set of best practices for DNA sequence-based identification of fusaria.
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Affiliation(s)
- Kerry O'Donnell
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Briana K Whitaker
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Imane Laraba
- Oak Ridge Institute for Science and Education Fellow, Mycotoxin Prevention and Applied Microbiology Research Unit, National Center for Agricultural Utilization Research, Peoria, IL 61604, U.S.A
| | - Robert H Proctor
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Daren W Brown
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Kirk Broders
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Hye-Seon Kim
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Susan P McCormick
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Mark Busman
- National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, U.S. Department of Agriculture, Agricultural Research Service, Peoria, IL 61604, U.S.A
| | - Takayuki Aoki
- Research Center of Genetic Resources, National Agriculture and Food Research Organization, Tsukuba, Japan
| | - Terry J Torres-Cruz
- Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A
| | - David M Geiser
- Department of Plant Pathology and Environmental Microbiology, Pennsylvania State University, University Park, PA 16802, U.S.A
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Characterization of Fusarium acuminatum: A Potential Enniatins Producer in Tunisian Wheat. J Fungi (Basel) 2022; 8:jof8050458. [PMID: 35628714 PMCID: PMC9144410 DOI: 10.3390/jof8050458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 04/25/2022] [Accepted: 04/27/2022] [Indexed: 11/17/2022] Open
Abstract
Fusarium Head Blight (FHB), caused by multiple species of Fusarium in small grain cereals, is a significant and long-standing problem anywhere in the world. Knowing regional Fusarium spp. present on non-symptomatic grains and their potential for mycotoxin production is of concern for identifying novel actions for FHB and mycotoxin management, such as treatments with essential oils. Analyzing the mycotoxin content of grains from non-symptomatic ears of different wheat varieties cultivated in Tunisia, we isolated Fusaria specimens identified as F. culmorum and F. acuminatum using analysis of the partial DNA sequence of the β-tubulin gene and ITS region. Two isolates of the latter species, uncommon in cereal grains in this region until now, were shown to be effective producers of enniatins in vitro, with 1390 and 3089 µg g−1 mycelial biomass (dry) in 11-day-old cultures. The susceptibility of an isolate of F. acuminatum to the fungistatic and antimycotoxin effects of eight essential oils was measured. Essential oils from Ammoides pusilla and Thymus capitatus used at 0.1 µL mL−1 in an agar culture medium, affected the mycelial growth by 55% and 79%, respectively and reduced the accumulation of enniatins per unit of mycelial colony by 26% and 52%, respectively. Finally, F. acuminatum was shown to be a contaminant of wheat grains in Tunisia and it may contribute to the contamination in enniatins. Two essential oils of Tunisian plants could be used for developing a biofungicide limiting both its mycelial growth and its accumulation of mycotoxins in grains.
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Lohmar JM, Rhoades NA, Patel TN, Proctor RH, Hammond TM, Brown DW. A-to-I mRNA editing controls spore death induced by a fungal meiotic drive gene in homologous and heterologous expression systems. Genetics 2022; 221:6528853. [PMID: 35166849 DOI: 10.1093/genetics/iyac029] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 02/06/2022] [Indexed: 11/13/2022] Open
Abstract
Spore killers are meiotic drive elements that can block development of sexual spores in fungi. In the maize ear rot and mycotoxin-producing fungus Fusarium verticillioides, a spore killer called SkK has been mapped to a 102-kb interval of chromosome V. Here, we show that a gene within this interval, SKC1, is required for SkK-mediated spore killing and meiotic drive. We also demonstrate that SKC1 is associated with at least four transcripts, two sense (sense-SKC1a and sense-SKC1b) and two antisense (antisense-SKC1a and antisense-SKC1b). Both antisense SKC1 transcripts lack obvious protein-coding sequences and thus appear to be non-coding RNAs. In contrast, sense-SKC1a is a protein-coding transcript that undergoes A-to-I editing to sense-SKC1b in sexual tissue. Translation of sense-SKC1a produces a 70 amino acid protein (Skc1a), whereas translation of sense-SKC1b produces an 84 amino acid protein (Skc1b). Heterologous expression analysis of SKC1 transcripts shows that sense-SKC1a also undergoes A-to-I editing to sense-SKC1b during the Neurospora crassa sexual cycle. Site directed mutagenesis studies indicate that Skc1b is responsible for spore killing in F. verticillioides and that it induces most meiotic cells to die in N. crassa. Finally, we report that SKC1 homologs are present in over 20 Fusarium species. Overall, our results demonstrate that fungal meiotic drive elements like SKC1 can influence the outcome of meiosis by hijacking a cell's A-to-I editing machinery and that the involvement of A-to-I editing in a fungal meiotic drive system does not preclude its horizontal transfer to a distantly related species.
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Affiliation(s)
- Jessica M Lohmar
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Unit, 1815 N. University St., Peoria, Illinois, 61604, USA
| | - Nicholas A Rhoades
- School of Biological Sciences, Illinois State University, Normal, Illinois, 61790, USA
| | - Tejas N Patel
- School of Biological Sciences, Illinois State University, Normal, Illinois, 61790, USA
| | - Robert H Proctor
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Unit, 1815 N. University St., Peoria, Illinois, 61604, USA
| | - Thomas M Hammond
- School of Biological Sciences, Illinois State University, Normal, Illinois, 61790, USA
| | - Daren W Brown
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Unit, 1815 N. University St., Peoria, Illinois, 61604, USA
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Atanasoff-Kardjalieff AK, Studt L. Secondary Metabolite Gene Regulation in Mycotoxigenic Fusarium Species: A Focus on Chromatin. Toxins (Basel) 2022; 14:96. [PMID: 35202124 PMCID: PMC8880415 DOI: 10.3390/toxins14020096] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 01/20/2022] [Accepted: 01/21/2022] [Indexed: 12/31/2022] Open
Abstract
Fusarium is a species-rich group of mycotoxigenic plant pathogens that ranks as one of the most economically important fungal genera in the world. During growth and infection, they are able to produce a vast spectrum of low-molecular-weight compounds, so-called secondary metabolites (SMs). SMs often comprise toxic compounds (i.e., mycotoxins) that contaminate precious food and feed sources and cause adverse health effects in humans and livestock. In this context, understanding the regulation of their biosynthesis is crucial for the development of cropping strategies that aim at minimizing mycotoxin contamination in the field. Nevertheless, currently, only a fraction of SMs have been identified, and even fewer are considered for regular monitoring by regulatory authorities. Limitations to exploit their full chemical potential arise from the fact that the genes involved in their biosynthesis are often silent under standard laboratory conditions and only induced upon specific stimuli mimicking natural conditions in which biosynthesis of the respective SM becomes advantageous for the producer. This implies a complex regulatory network. Several components of these gene networks have been studied in the past, thereby greatly advancing the understanding of SM gene regulation and mycotoxin biosynthesis in general. This review aims at summarizing the latest advances in SM research in these notorious plant pathogens with a focus on chromatin structure.
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Affiliation(s)
| | - Lena Studt
- Department of Applied Genetics and Cell Biology, Institute of Microbial Genetics, University of Natural Resources and Life Sciences, Vienna (BOKU), 3430 Tulln an der Donau, Austria;
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Wang Y, Xu J, Shi J, Ma G, Wang G. Draft genome sequence of a lipopeptide-producing Bacillus amyloliquefaciens strain isolated from wheat field soil with antagonistic activity against azole-resistant Fusarium graminearum. J Glob Antimicrob Resist 2021; 29:555-557. [PMID: 34954102 DOI: 10.1016/j.jgar.2021.12.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 12/04/2021] [Accepted: 12/16/2021] [Indexed: 11/16/2022] Open
Abstract
OBJECTIVES Lipopeptides have been revealed as good potential biocontrol agents against various pathogenic microbes. In the present work, we report the draft genome sequence of a lipopeptide-producing strain of Bacillus amyloliquefaciens (7D3) that showed good antifungal activity against the azole-resistant pathogenic fungus Fusarium graminearum. METHODS Whole-genome sequencing of strain 7D3 was performed on an Illumina MiSeq 300 platform. Raw data were cleaned using Trim Galore v.0.4.0 and were checked for quality using FastQC. De novo assembly was performed using the SOAPdenovo2 package. Genes responsible for the biosynthesis of secondary metabolites were identified using antiSMASH. RESULTS Bacillus amyloliquefaciens 7D3 genome assembly resulted in a total genome size of 3 913 220 bp with a G+C content of 46.13%. There were 3998 predicted genes with 72 tRNAs and 9 rRNAs. A total of ten gene clusters were found to be related to secondary metabolite biosynthesis, of which five were identified as lipopeptide synthesis clusters. CONCLUSION This study presents the genome sequence of B. amyloliquefaciens 7D3, which exhibited intense antagonistic activity against azole-resistant fungi. The whole genome sequence will help in the search for novel antifungal peptides against drug-resistant pathogens.
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Affiliation(s)
- Yuting Wang
- School of Environmental and Chemical Engineering, Jiangsu Ocean University, Lianyungang 222005, People's Republic of China
| | - Jianhong Xu
- Jiangsu Key Laboratory for Food Quality and Safety, State Key Laboratory Cultivation Base, Ministry of Science and Technology/Key Laboratory for Agro-product Safety Risk Evaluation (Nanjing), Ministry of Agriculture and Rural Affairs/Collaborative Innovation Center for Modern Grain Circulation and Safety/Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, People's Republic of China; College of Life Science, Nanjing Agricultural University, Nanjing 210095, People's Republic of China; School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, People's Republic of China
| | - Jianrong Shi
- Jiangsu Key Laboratory for Food Quality and Safety, State Key Laboratory Cultivation Base, Ministry of Science and Technology/Key Laboratory for Agro-product Safety Risk Evaluation (Nanjing), Ministry of Agriculture and Rural Affairs/Collaborative Innovation Center for Modern Grain Circulation and Safety/Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, People's Republic of China; College of Life Science, Nanjing Agricultural University, Nanjing 210095, People's Republic of China
| | - Guizhen Ma
- School of Environmental and Chemical Engineering, Jiangsu Ocean University, Lianyungang 222005, People's Republic of China.
| | - Gang Wang
- School of Environmental and Chemical Engineering, Jiangsu Ocean University, Lianyungang 222005, People's Republic of China; Jiangsu Key Laboratory for Food Quality and Safety, State Key Laboratory Cultivation Base, Ministry of Science and Technology/Key Laboratory for Agro-product Safety Risk Evaluation (Nanjing), Ministry of Agriculture and Rural Affairs/Collaborative Innovation Center for Modern Grain Circulation and Safety/Institute of Food Safety and Nutrition, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, People's Republic of China; College of Life Science, Nanjing Agricultural University, Nanjing 210095, People's Republic of China.
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Gutiérrez S, McCormick SP, Cardoza RE, Kim HS, Yugueros LL, Vaughan MM, Carro-Huerga G, Busman M, Sáenz de Miera LE, Jaklitsch WM, Zhuang WY, Wang C, Casquero PA, Proctor RH. Distribution, Function, and Evolution of a Gene Essential for Trichothecene Toxin Biosynthesis in Trichoderma. Front Microbiol 2021; 12:791641. [PMID: 34925301 PMCID: PMC8675399 DOI: 10.3389/fmicb.2021.791641] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 11/04/2021] [Indexed: 11/13/2022] Open
Abstract
Trichothecenes are terpenoid toxins produced by species in 10 fungal genera, including species of Trichoderma. The trichothecene biosynthetic gene (tri) cluster typically includes the tri5 gene, which encodes a terpene synthase that catalyzes formation of trichodiene, the parent compound of all trichothecenes. The two Trichoderma species, Trichoderma arundinaceum and T. brevicompactum, that have been examined are unique in that tri5 is located outside the tri cluster in a genomic region that does not include other known tri genes. In the current study, analysis of 35 species representing a wide range of the phylogenetic diversity of Trichoderma revealed that 22 species had tri5, but only 13 species had both tri5 and the tri cluster. tri5 was not located in the cluster in any species. Using complementation analysis of a T. arundinaceum tri5 deletion mutant, we demonstrated that some tri5 homologs from species that lack a tri cluster are functional, but others are not. Phylogenetic analyses suggest that Trichoderma tri5 was under positive selection following its divergence from homologs in other fungi but before Trichoderma species began diverging from one another. We propose two models to explain these diverse observations. One model proposes that the location of tri5 outside the tri cluster resulted from loss of tri5 from the cluster in an ancestral species followed by reacquisition via horizontal transfer. The other model proposes that in species that have a functional tri5 but lack the tri cluster, trichodiene production provides a competitive advantage.
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Affiliation(s)
- Santiago Gutiérrez
- University Group for Research in Engineering and Sustainable Agriculture (GUIIAS), Area of Microbiology, University of León, Ponferrada, Spain
| | - Susan P McCormick
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, United States
| | - Rosa E Cardoza
- University Group for Research in Engineering and Sustainable Agriculture (GUIIAS), Area of Microbiology, University of León, Ponferrada, Spain
| | - Hye-Seon Kim
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, United States
| | - Laura Lindo Yugueros
- University Group for Research in Engineering and Sustainable Agriculture (GUIIAS), Area of Microbiology, University of León, Ponferrada, Spain
| | - Martha Marie Vaughan
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, United States
| | - Guzmán Carro-Huerga
- University Group for Research in Engineering and Sustainable Agriculture (GUIIAS), Area of Plant Production, University of León, León, Spain
| | - Mark Busman
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, United States
| | | | - Walter M Jaklitsch
- Division of Systematic and Evolutionary Botany, Department of Botany and Biodiversity Research, University of Vienna, Vienna, Austria
| | - Wen-Ying Zhuang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Chao Wang
- State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Pedro A Casquero
- University Group for Research in Engineering and Sustainable Agriculture (GUIIAS), Area of Plant Production, University of León, León, Spain
| | - Robert Henry Proctor
- USDA, Agricultural Research Service, National Center for Agricultural Utilization Research, Mycotoxin Prevention and Applied Microbiology Research Unit, Peoria, IL, United States
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Garcia-Ceron D, Lowe RGT, McKenna JA, Brain LM, Dawson CS, Clark B, Berkowitz O, Faou P, Whelan J, Bleackley MR, Anderson MA. Extracellular Vesicles from Fusarium graminearum Contain Protein Effectors Expressed during Infection of Corn. J Fungi (Basel) 2021; 7:977. [PMID: 34829264 PMCID: PMC8625442 DOI: 10.3390/jof7110977] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/12/2021] [Accepted: 11/15/2021] [Indexed: 12/30/2022] Open
Abstract
Fusarium graminearum (Fgr) is a devastating filamentous fungal pathogen that causes diseases in cereals, while producing mycotoxins that are toxic for humans and animals, and render grains unusable. Low efficiency in managing Fgr poses a constant need for identifying novel control mechanisms. Evidence that fungal extracellular vesicles (EVs) from pathogenic yeast have a role in human disease led us to question whether this is also true for fungal plant pathogens. We separated EVs from Fgr and performed a proteomic analysis to determine if EVs carry proteins with potential roles in pathogenesis. We revealed that protein effectors, which are crucial for fungal virulence, were detected in EV preparations and some of them did not contain predicted secretion signals. Furthermore, a transcriptomic analysis of corn (Zea mays) plants infected by Fgr revealed that the genes of some of the effectors were highly expressed in vivo, suggesting that the Fgr EVs are a mechanism for the unconventional secretion of effectors and virulence factors. Our results expand the knowledge on fungal EVs in plant pathogenesis and cross-kingdom communication, and may contribute to the discovery of new antifungals.
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Affiliation(s)
- Donovan Garcia-Ceron
- Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (D.G.-C.); (J.A.M.); (L.M.B.); (C.S.D.); (M.R.B.)
| | - Rohan G. T. Lowe
- La Trobe Comprehensive Proteomics Platform, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (R.G.T.L.); (P.F.)
| | - James A. McKenna
- Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (D.G.-C.); (J.A.M.); (L.M.B.); (C.S.D.); (M.R.B.)
| | - Linda M. Brain
- Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (D.G.-C.); (J.A.M.); (L.M.B.); (C.S.D.); (M.R.B.)
| | - Charlotte S. Dawson
- Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (D.G.-C.); (J.A.M.); (L.M.B.); (C.S.D.); (M.R.B.)
- Cambridge Centre for Proteomics, MRC Toxicology Unit, University of Cambridge, Cambridge CB2 1TN, UK
| | - Bethany Clark
- Centre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley 6102, Australia;
| | - Oliver Berkowitz
- Department of Animal, Plant and Soil Science, La Trobe Institute for Agriculture and Food, La Trobe University, Bundoora 3086, Australia; (O.B.); (J.W.)
| | - Pierre Faou
- La Trobe Comprehensive Proteomics Platform, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (R.G.T.L.); (P.F.)
| | - James Whelan
- Department of Animal, Plant and Soil Science, La Trobe Institute for Agriculture and Food, La Trobe University, Bundoora 3086, Australia; (O.B.); (J.W.)
| | - Mark R. Bleackley
- Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (D.G.-C.); (J.A.M.); (L.M.B.); (C.S.D.); (M.R.B.)
| | - Marilyn A. Anderson
- Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Bundoora 3086, Australia; (D.G.-C.); (J.A.M.); (L.M.B.); (C.S.D.); (M.R.B.)
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