1
|
Ceasar SA, Prabhu S, Ebeed HT. Protein research in millets: current status and way forward. PLANTA 2024; 260:43. [PMID: 38958760 DOI: 10.1007/s00425-024-04478-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 06/27/2024] [Indexed: 07/04/2024]
Abstract
MAIN CONCLUSION Millets' protein studies are lagging behind those of major cereals. Current status and future insights into the investigation of millet proteins are discussed. Millets are important small-seeded cereals majorly grown and consumed by people in Asia and Africa and are considered crops of future food security. Although millets possess excellent climate resilience and nutrient supplementation properties, their research advancements have been lagging behind major cereals. Although considerable genomic resources have been developed in recent years, research on millet proteins and proteomes is currently limited, highlighting a need for further investigation in this area. This review provides the current status of protein research in millets and provides insights to understand protein responses for climate resilience and nutrient supplementation in millets. The reference proteome data is available for sorghum, foxtail millet, and proso millet to date; other millets, such as pearl millet, finger millet, barnyard millet, kodo millet, tef, and browntop millet, do not have any reference proteome data. Many studies were reported on stress-responsive protein identification in foxtail millet, with most studies on the identification of proteins under drought-stress conditions. Pearl millet has a few reports on protein identification under drought and saline stress. Finger millet is the only other millet to have a report on stress-responsive (drought) protein identification in the leaf. For protein localization studies, foxtail millet has a few reports. Sorghum has the highest number of 40 experimentally proven crystal structures, and other millets have fewer or no experimentally proven structures. Further proteomics studies will help dissect the specific proteins involved in climate resilience and nutrient supplementation and aid in breeding better crops to conserve food security.
Collapse
Affiliation(s)
- S Antony Ceasar
- Division of Plant Molecular Biology and Biotechnology, Department of Biosciences, Rajagiri College of Social Sciences, Cochin, Kerala, 683 104, India.
| | - Srinivasan Prabhu
- Division of Phytochemistry and Drug Design, Department of Biosciences, Rajagiri College of Social Sciences, Cochin, Kerala, 683 104, India
| | - Heba T Ebeed
- Botany and Microbiology Department, Faculty of Science, Damietta University, Damietta, Egypt
- National Biotechnology Network of Expertise (NBNE), Academy of Scientific Research and Technology (ASRT), Cairo, Egypt
| |
Collapse
|
2
|
Yu Y, Alseekh S, Zhu Z, Zhou K, Fernie AR. Multiomics and biotechnologies for understanding and influencing cadmium accumulation and stress response in plants. PLANT BIOTECHNOLOGY JOURNAL 2024. [PMID: 38817148 DOI: 10.1111/pbi.14379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 03/04/2024] [Accepted: 05/03/2024] [Indexed: 06/01/2024]
Abstract
Cadmium (Cd) is one of the most toxic heavy metals faced by plants and, additionally, via the food chain, threatens human health. It is principally dispersed through agro-ecosystems via anthropogenic activities and geogenic sources. Given its high mobility and persistence, Cd, although not required, can be readily assimilated by plants thereby posing a threat to plant growth and productivity as well as animal and human health. Thus, breeding crop plants in which the edible parts contain low to zero Cd as safe food stuffs and harvesting shoots of high Cd-containing plants as a route for decontaminating soils are vital strategies to cope with this problem. Recently, multiomics approaches have been employed to considerably enhance our understanding of the mechanisms underlying (i) Cd toxicity, (ii) Cd accumulation, (iii) Cd detoxification and (iv) Cd acquisition tolerance in plants. This information can be deployed in the development of the biotechnological tools for developing plants with modulated Cd tolerance and detoxification to safeguard cellular and genetic integrity as well as to minimize food chain contamination. The aim of this review is to provide a current update about the mechanisms involved in Cd uptake by plants and the recent developments in the area of multiomics approach in terms of Cd stress responses, as well as in the development of Cd tolerant and low Cd accumulating crops.
Collapse
Affiliation(s)
- Yan Yu
- School of Agronomy, Anhui Agricultural University, Hefei, China
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Saleh Alseekh
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria
| | - Zonghe Zhu
- School of Agronomy, Anhui Agricultural University, Hefei, China
| | - Kejin Zhou
- School of Agronomy, Anhui Agricultural University, Hefei, China
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
- Center of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria
| |
Collapse
|
3
|
Wang J, Liu X, Chen Y, Zhu FL, Sheng J, Diao Y. Physiological and transcriptomic analyses reveal the cadmium tolerance mechanism of Miscanthus lutarioriparia. PLoS One 2024; 19:e0302940. [PMID: 38748679 PMCID: PMC11095687 DOI: 10.1371/journal.pone.0302940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2023] [Accepted: 04/15/2024] [Indexed: 05/19/2024] Open
Abstract
Miscanthus lutarioriparia is a promising energy crop that is used for abandoned mine soil phytoremediation because of its high biomass yield and strong tolerance to heavy metals. However, the biological mechanism of heavy metal resistance is limited, especially for applications in the soil restoration of mining areas. Here, through the investigation of soil cadmium(Cd) in different mining areas and soil potted under Cd stress, the adsorption capacity of Miscanthus lutarioriparia was analyzed. The physiological and transcriptional effects of Cd stress on M. lutarioriparia leaves and roots under hydroponic conditions were analyzed. The results showed that M. lutarioriparia could reduce the Cd content in mining soil by 29.82%. Moreover, different Cd varieties have different Cd adsorption capacities in soils with higher Cd concentration. The highest cadmium concentrations in the aboveground and belowground parts of the plants were 185.65 mg/kg and 186.8 mg/kg, respectively. The total chlorophyll content, superoxide dismutase and catalase activities all showed a trend of increasing first and then decreasing. In total, 24,372 differentially expressed genes were obtained, including 7735 unique to leaves, 7725 unique to roots, and 8912 unique to leaves and roots, which showed differences in gene expression between leaves and roots. These genes were predominantly involved in plant hormone signal transduction, glutathione metabolism, flavonoid biosynthesis, ABC transporters, photosynthesis and the metal ion transport pathway. In addition, the number of upregulated genes was greater than the number of downregulated genes at different stress intervals, which indicated that M. lutarioriparia adapted to Cd stress mainly through positive regulation. These results lay a solid foundation for breeding excellent Cd resistant M. lutarioriparia and other plants. The results also have an important theoretical significance for further understanding the detoxification mechanism of Cd stress and the remediation of heavy metal pollution in mining soil.
Collapse
Affiliation(s)
- Jia Wang
- Joint National-Local Engineering Research Centre for Safe and Precise Coal Mining, Anhui University of Science and Technology, Huainan, 232001, P. R. China
- Key Laboratory of Industrial Dust Prevention and Control & Occupational Safety and Health of the Ministry of Education, Anhui University of Science and Technology, Huainan, 232001, P. R. China
- State Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of Life Sciences, Wuhan University, Wuhan, 430023, P. R. China
| | - Xinyu Liu
- Key Laboratory of Industrial Dust Prevention and Control & Occupational Safety and Health of the Ministry of Education, Anhui University of Science and Technology, Huainan, 232001, P. R. China
| | - Yiran Chen
- Key Laboratory of Industrial Dust Prevention and Control & Occupational Safety and Health of the Ministry of Education, Anhui University of Science and Technology, Huainan, 232001, P. R. China
| | - Feng lin Zhu
- Joint National-Local Engineering Research Centre for Safe and Precise Coal Mining, Anhui University of Science and Technology, Huainan, 232001, P. R. China
- Key Laboratory of Industrial Dust Prevention and Control & Occupational Safety and Health of the Ministry of Education, Anhui University of Science and Technology, Huainan, 232001, P. R. China
| | - Jiajing Sheng
- State Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of Life Sciences, Wuhan University, Wuhan, 430023, P. R. China
| | - Ying Diao
- School of life science and technology, Wuhan Polytechnic University, Wuhan, 430023, P. R. China
| |
Collapse
|
4
|
Al-Obaidi JR, Jamaludin AA, Rahman NA, Ahmad-Kamil EI. How plants respond to heavy metal contamination: a narrative review of proteomic studies and phytoremediation applications. PLANTA 2024; 259:103. [PMID: 38551683 DOI: 10.1007/s00425-024-04378-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Accepted: 03/07/2024] [Indexed: 04/02/2024]
Abstract
MAIN CONCLUSION Heavy metal pollution caused by human activities is a serious threat to the environment and human health. Plants have evolved sophisticated defence systems to deal with heavy metal stress, with proteins and enzymes serving as critical intercepting agents for heavy metal toxicity reduction. Proteomics continues to be effective in identifying markers associated with stress response and metabolic processes. This review explores the complex interactions between heavy metal pollution and plant physiology, with an emphasis on proteomic and biotechnological perspectives. Over the last century, accelerated industrialization, agriculture activities, energy production, and urbanization have established a constant need for natural resources, resulting in environmental degradation. The widespread buildup of heavy metals in ecosystems as a result of human activity is especially concerning. Although some heavy metals are required by organisms in trace amounts, high concentrations pose serious risks to the ecosystem and human health. As immobile organisms, plants are directly exposed to heavy metal contamination, prompting the development of robust defence mechanisms. Proteomics has been used to understand how plants react to heavy metal stress. The development of proteomic techniques offers promising opportunities to improve plant tolerance to toxicity from heavy metals. Additionally, there is substantial scope for phytoremediation, a sustainable method that uses plants to extract, sequester, or eliminate contaminants in the context of changes in protein expression and total protein behaviour. Changes in proteins and enzymatic activities have been highlighted to illuminate the complex effects of heavy metal pollution on plant metabolism, and how proteomic research has revealed the plant's ability to mitigate heavy metal toxicity by intercepting vital nutrients, organic substances, and/or microorganisms.
Collapse
Affiliation(s)
- Jameel R Al-Obaidi
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900, Tanjong Malim, Perak, Malaysia.
- Applied Science Research Center, Applied Science Private University, Amman, Jordan.
| | - Azi Azeyanty Jamaludin
- Department of Biology, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900, Tanjong Malim, Perak, Malaysia
- Center of Biodiversity and Conservation, Faculty of Science and Mathematics, Universiti Pendidikan Sultan Idris, 35900, Tanjong Malim, Perak, Malaysia
| | - Norafizah Abdul Rahman
- Gene Marker Laboratory, Faculty of Agriculture and Life Sciences (AGLS), Science South Building, Lincoln University, Lincoln, 7608, Canterbury, New Zealand
| | - E I Ahmad-Kamil
- Malaysian Nature Society (MNS), JKR 641, Jalan Kelantan, Bukit Persekutuan, 50480, Kuala Lumpur, Malaysia.
| |
Collapse
|
5
|
Tian F, Wang J, Ding F, Wang L, Yang Y, Bai X, Tan C, Liao X. Comparative transcriptomics and proteomics analysis of the symbiotic germination of Paphiopedilum barbigerum with Epulorhiza sp. FQXY019. Front Microbiol 2024; 15:1358137. [PMID: 38562471 PMCID: PMC10982344 DOI: 10.3389/fmicb.2024.1358137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 03/06/2024] [Indexed: 04/04/2024] Open
Abstract
Introduction Paphiopedilum barbigerum is currently the rarest and most endangered species of orchids in China and has significant ornamental value. The mature seeds of P. barbigerum are difficult to germinate owing to the absence of an endosperm and are highly dependent on mycorrhizal fungi for germination and subsequent development. However, little is known about the regulation mechanisms of symbiosis and symbiotic germination of P. barbigerum seeds. Methods Herein, transcriptomics and proteomics were used to explore the changes in the P. barbigerum seeds after inoculation with (FQXY019 treatment group) or without (control group) Epulorhiza sp. FQXY019 at 90 days after germination. Results Transcriptome sequencing revealed that a total of 10,961 differentially expressed genes (DEGs; 2,599 upregulated and 8,402 downregulated) were identified in the control and FQXY019 treatment groups. These DEGs were mainly involved in carbohydrate, fatty acid, and amino acid metabolism. Furthermore, the expression levels of candidate DEGs related to nodulin, Ca2+ signaling, and plant lectins were significantly affected in P. barbigerum in the FQXY019 treatment groups. Subsequently, tandem mass tag-based quantitative proteomics was performed to recognize the differentially expressed proteins (DEPs), and a total of 537 DEPs (220 upregulated and 317 downregulated) were identified that were enriched in processes including photosynthesis, photosynthesis-antenna proteins, and fatty acid biosynthesis and metabolism. Discussion This study provides novel insight on the mechanisms underlying the in vitro seed germination and protocorm development of P. barbigerum by using a compatible fungal symbiont and will benefit the reintroduction and mycorrhizal symbiotic germination of endangered orchids.
Collapse
Affiliation(s)
- Fan Tian
- Guizhou Academy of Forestry, Guiyang, Guizhou, China
- Key Laboratory for Biodiversity Conservation in the Karst Mountain Area of Southwestern China, National Forestry and Grassland Administration, Guiyang, Guizhou, China
| | - Juncai Wang
- Guizhou Academy of Sciences, Guiyang, Guizhou, China
| | - Fangjun Ding
- Guizhou Academy of Forestry, Guiyang, Guizhou, China
- Key Laboratory for Biodiversity Conservation in the Karst Mountain Area of Southwestern China, National Forestry and Grassland Administration, Guiyang, Guizhou, China
| | - Lianhui Wang
- Guizhou Academy of Forestry, Guiyang, Guizhou, China
- Key Laboratory for Biodiversity Conservation in the Karst Mountain Area of Southwestern China, National Forestry and Grassland Administration, Guiyang, Guizhou, China
| | - Yanbing Yang
- Guizhou Academy of Forestry, Guiyang, Guizhou, China
- Key Laboratory for Biodiversity Conservation in the Karst Mountain Area of Southwestern China, National Forestry and Grassland Administration, Guiyang, Guizhou, China
| | - Xinxiang Bai
- College of Forestry, Guizhou University, Guiyang, Guizhou, China
| | - Chengjiang Tan
- Guizhou Maolan National Nature Reserve Administration, Libo, Guizhou, China
| | - Xiaofeng Liao
- Guizhou Academy of Sciences, Guiyang, Guizhou, China
| |
Collapse
|
6
|
Raza A, Salehi H, Bashir S, Tabassum J, Jamla M, Charagh S, Barmukh R, Mir RA, Bhat BA, Javed MA, Guan DX, Mir RR, Siddique KHM, Varshney RK. Transcriptomics, proteomics, and metabolomics interventions prompt crop improvement against metal(loid) toxicity. PLANT CELL REPORTS 2024; 43:80. [PMID: 38411713 PMCID: PMC10899315 DOI: 10.1007/s00299-024-03153-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Accepted: 01/05/2024] [Indexed: 02/28/2024]
Abstract
The escalating challenges posed by metal(loid) toxicity in agricultural ecosystems, exacerbated by rapid climate change and anthropogenic pressures, demand urgent attention. Soil contamination is a critical issue because it significantly impacts crop productivity. The widespread threat of metal(loid) toxicity can jeopardize global food security due to contaminated food supplies and pose environmental risks, contributing to soil and water pollution and thus impacting the whole ecosystem. In this context, plants have evolved complex mechanisms to combat metal(loid) stress. Amid the array of innovative approaches, omics, notably transcriptomics, proteomics, and metabolomics, have emerged as transformative tools, shedding light on the genes, proteins, and key metabolites involved in metal(loid) stress responses and tolerance mechanisms. These identified candidates hold promise for developing high-yielding crops with desirable agronomic traits. Computational biology tools like bioinformatics, biological databases, and analytical pipelines support these omics approaches by harnessing diverse information and facilitating the mapping of genotype-to-phenotype relationships under stress conditions. This review explores: (1) the multifaceted strategies that plants use to adapt to metal(loid) toxicity in their environment; (2) the latest findings in metal(loid)-mediated transcriptomics, proteomics, and metabolomics studies across various plant species; (3) the integration of omics data with artificial intelligence and high-throughput phenotyping; (4) the latest bioinformatics databases, tools and pipelines for single and/or multi-omics data integration; (5) the latest insights into stress adaptations and tolerance mechanisms for future outlooks; and (6) the capacity of omics advances for creating sustainable and resilient crop plants that can thrive in metal(loid)-contaminated environments.
Collapse
Affiliation(s)
- Ali Raza
- Guangdong Key Laboratory of Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518060, China
| | - Hajar Salehi
- Department for Sustainable Food Process, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122, Piacenza, Italy
| | - Shanza Bashir
- Institute of Environmental Sciences and Engineering, School of Civil and Environmental Engineering, National University of Sciences and Technology, Islamabad, Pakistan
| | - Javaria Tabassum
- Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Monica Jamla
- Department of Biotechnology, Modern College of Arts, Science and Commerce, Savitribai Phule Pune University, Ganeshkhind, Pune, 411016, India
| | - Sidra Charagh
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences (CAAS), Hangzhou, China
| | - Rutwik Barmukh
- WA State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, Murdoch, WA, 6150, Australia
| | - Rakeeb Ahmad Mir
- Department of Biotechnology, School of Life Sciences, Central University of Kashmir, Ganderbal, India
| | - Basharat Ahmad Bhat
- Department of Bio-Resources, Amar Singh College Campus, Cluster University Srinagar, Srinagar, JK, India
| | - Muhammad Arshad Javed
- Department of Plant Breeding and Genetics, Faculty of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Dong-Xing Guan
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Reyazul Rouf Mir
- Division of Genetics and Plant Breeding, Faculty of Agriculture, Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST), Srinagar, Kashmir, India
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, Australia.
| | - Rajeev K Varshney
- WA State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Food Futures Institute, Murdoch University, Murdoch, WA, 6150, Australia.
| |
Collapse
|
7
|
Moore RET, Ullah I, Dunwell JM, Rehkämper M. Stable Isotope Analyses Reveal Impact of Fe and Zn on Cd Uptake and Translocation by Theobroma cacao. PLANTS (BASEL, SWITZERLAND) 2024; 13:551. [PMID: 38498553 PMCID: PMC10893372 DOI: 10.3390/plants13040551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 02/09/2024] [Accepted: 02/14/2024] [Indexed: 03/20/2024]
Abstract
High concentrations of toxic cadmium (Cd) in soils are problematic as the element accumulates in food crops such as rice and cacao. A mitigation strategy to minimise Cd accumulation is to enhance the competitive uptake of plant-essential metals. Theobroma cacao seedlings were grown hydroponically with added Cd. Eight different treatments were used, which included/excluded hydroponic or foliar zinc (Zn) and/or iron (Fe) for the final growth period. Analyses of Cd concentrations and natural stable isotope compositions by multiple collector ICP-MS were conducted. Cadmium uptake and translocation decreased when Fe was removed from the hydroponic solutions, while the application of foliar Zn-EDTA may enhance Cd translocation. No significant differences in isotope fractionation during uptake were found between treatments. Data from all treatments fit a single Cd isotope fractionation model associated with sequestration (seq) of isotopically light Cd in roots and unidirectional mobilisation (mob) of isotopically heavier Cd to the leaves (ε114Cdseq-mob = -0.13‱). This result is in excellent agreement with data from an investigation of 19 genetically diverse cacao clones. The different Cd dynamics exhibited by the clones and seen in response to different Fe availability may be linked to similar physiological processes, such as the regulation of specific transporter proteins.
Collapse
Affiliation(s)
- Rebekah E. T. Moore
- Department of Earth Science and Engineering, Imperial College, London SW7 2BP, UK;
| | - Ihsan Ullah
- School of Agriculture, Policy and Development, University of Reading, Reading RG6 6EU, UK; (I.U.); (J.M.D.)
| | - Jim M. Dunwell
- School of Agriculture, Policy and Development, University of Reading, Reading RG6 6EU, UK; (I.U.); (J.M.D.)
| | - Mark Rehkämper
- Department of Earth Science and Engineering, Imperial College, London SW7 2BP, UK;
| |
Collapse
|
8
|
Ai T, Liu H, Wan J, Lu B, Yu X, Liu J, Yimamu A, Aishan S, Liu C, Qin R. Proteomics Analysis Reveals the Underlying Factors of Mucilage Disappearance in Brasenia schreberi and Its Influence on Nutrient Accumulation. Foods 2024; 13:518. [PMID: 38397495 PMCID: PMC10888037 DOI: 10.3390/foods13040518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2023] [Revised: 01/31/2024] [Accepted: 02/06/2024] [Indexed: 02/25/2024] Open
Abstract
Brasenia schreberi J.F. Gmel (BS) is rich in mucilage, which has diverse biological activities, and is utilized in the food and pharmaceutical industries due to its nutritional value. Proteomics analysis was employed to investigate the cause of mucilage disappearance in BS and its effect on nutrient accumulation. Among the 2892 proteins identified, 840 differentially expressed proteins (DEPs) were found to be involved in mucilage development. By comparing the expression patterns and functions and pathway enrichment, the DEPs mainly contributed to carbon and energy metabolism, polysaccharide metabolism, and photosynthesis. Our study also revealed positive correlations between mucilage accumulation and tryptophan metabolism, with high levels of indole-3-acetic (IAA) contributing to mucilage accumulation. Furthermore, environmental changes and particularly excessive nutrients were found to be detrimental to mucilage synthesis. Overall, in the absence of various stimuli in the growing environment, BS accumulates more nutrients within the plant itself instead of producing mucilage.
Collapse
Affiliation(s)
- Tingyang Ai
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Hong Liu
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Jiawei Wan
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Bojie Lu
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Xiujuan Yu
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Jiao Liu
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Aidiya Yimamu
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Saimire Aishan
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| | - Caixiang Liu
- Department of Biological Magnetic Resonance Spectroscopy, Innovation Academy of Precision Measurement Science and Technology Innovation, Chinese Academy of Sciences, Wuhan 430071, China
| | - Rui Qin
- Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China; (T.A.); (H.L.); (J.W.); (B.L.); (X.Y.); (J.L.); (A.Y.); (S.A.)
| |
Collapse
|
9
|
Halder T, Stroeher E, Liu H, Chen Y, Yan G, Siddique KHM. Protein biomarkers for root length and root dry mass on chromosomes 4A and 7A in wheat. J Proteomics 2024; 291:105044. [PMID: 37931703 DOI: 10.1016/j.jprot.2023.105044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Revised: 10/16/2023] [Accepted: 10/22/2023] [Indexed: 11/08/2023]
Abstract
Improving the wheat (Triticum aestivum L.) root system is important for enhancing grain yield and climate resilience. Total root length (RL) and root dry mass (RM) significantly contribute to water and nutrient acquisition directly impacting grain yield and stress tolerance. This study used label-free quantitative proteomics to identify proteins associated with RL and RM in wheat near-isogenic lines (NILs). NIL pair 6 had 113 and NIL pair 9 had 30 differentially abundant proteins (DAPs). Three of identified DAPs located within the targeted genomic regions (GRs) of NIL pairs 6 (qDT.4A.1) and 9 (QHtscc.ksu-7A), showed consistent gene expressions at the protein and mRNA transcription (qRT-PCR) levels for asparagine synthetase (TraesCS4A02G109900), signal recognition particle 19 kDa protein (TraesCS7A02G333600) and 3,4-dihydroxy-2-butanone 4-phosphate synthase (TraesCS7A02G415600). This study discovered, for the first time, the involvement of these proteins as candidate biomarkers for increased RL and RM in wheat. However, further functional validation is required to ascertain their practical applicability in wheat root breeding. SIGNIFICANCE OF THE STUDY: Climate change has impacted global demand for wheat (Triticum aestivum L.). Root traits such as total root length (RL) and root dry mass (RM) are crucial for water and nutrient uptake and tolerance to abiotic stresses such as drought, salinity, and nutrient imbalance in wheat. Improving RL and RM could significantly enhance wheat grain yield and climate resilience. However, breeding for these traits has been limited by lack of appropriate root phenotyping methods, advanced genotypes, and the complex nature of the wheat genome. In this study, we used a semi-hydroponic root phenotyping system to collect accurate root data, near-isogenic lines (NILs; isolines with similar genetic backgrounds but contrasting target genomic regions (GRs)) and label-free quantitative proteomics to explore the molecular mechanisms underlying high RL and RM in wheat. We identified differentially abundant proteins (DAPs) and their molecular pathways in NIL pairs 6 (GR: qDT.4A.1) and 9 (GR: QHtscc.ksu-7A), providing a foundation for further molecular investigations. Furthermore, we identified three DAPs within the target GRs of the NIL pairs with differential expression at the transcript level, as confirmed by qRT-PCR analysis which could serve as candidate protein biomarkers for RL and RM improvement.
Collapse
Affiliation(s)
- Tanushree Halder
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; Department of Genetics and Plant Breeding, Faculty of Agriculture, Sher-e-Bangla Agricultural University, Dhaka 1207, Bangladesh.
| | - Elke Stroeher
- Centre for Microscopy, Characterisation & Analysis, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Hui Liu
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.
| | - Yinglong Chen
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Guijun Yan
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Kadambot H M Siddique
- UWA School of Agriculture and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; The UWA Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.
| |
Collapse
|
10
|
Guo H, Deng M, Yu F, Li H, Cao Z, Zeng Q, Chen Z, Luo H, Tang B. Phenotypic and Proteomic Insights into Differential Cadmium Accumulation in Maize Kernels. Genes (Basel) 2023; 14:2204. [PMID: 38137026 PMCID: PMC10742529 DOI: 10.3390/genes14122204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 12/10/2023] [Accepted: 12/11/2023] [Indexed: 12/24/2023] Open
Abstract
The contamination of agricultural soil with cadmium (Cd), a heavy metal, poses a significant environmental challenge, affecting crop growth, development, and human health. Previous studies have established the pivotal role of the ZmHMA3 gene, a P-type ATPase heavy metal transporter, in determining variable Cd accumulation in maize grains among 513 inbred lines. To decipher the molecular mechanism underlying mutation-induced phenotypic differences mediated by ZmHMA3, we conducted a quantitative tandem mass tag (TMT)-based proteomic analysis of immature maize kernels. This analysis aimed to identify differentially expressed proteins (DEPs) in wild-type B73 and ZmHMA3 null mutant under Cd stress. The findings demonstrated that ZmHMA3 accumulated higher levels of Cd compared to B73 when exposed to varying Cd concentrations in the soil. In comparison to soil with a low Cd concentration, B73 and ZmHMA3 exhibited 75 and 142 DEPs, respectively, with 24 common DEPs shared between them. ZmHMA3 showed a higher induction of upregulated genes related to Cd stress than B73. Amino sugar and nucleotide sugar metabolism was specifically enriched in B73, while phenylpropanoid biosynthesis, nitrogen metabolism, and glyoxylate and dicarboxylate metabolism appeared to play a more significant role in ZmHMA3. This study provides proteomics insights into unraveling the molecular mechanism underlying the differences in Cd accumulation in maize kernels.
Collapse
Affiliation(s)
- Huanle Guo
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China; (H.G.); (M.D.)
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (H.L.); (Z.C.); (Q.Z.); (Z.C.)
| | - Min Deng
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China; (H.G.); (M.D.)
- Maize Engineering Technology Research Center of Hunan Province, Changsha 410128, China
| | - Feng Yu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China;
| | - Han Li
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (H.L.); (Z.C.); (Q.Z.); (Z.C.)
| | - Zhongyang Cao
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (H.L.); (Z.C.); (Q.Z.); (Z.C.)
| | - Qiang Zeng
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (H.L.); (Z.C.); (Q.Z.); (Z.C.)
| | - Zhihui Chen
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (H.L.); (Z.C.); (Q.Z.); (Z.C.)
| | - Hongbing Luo
- College of Agronomy, Hunan Agricultural University, Changsha 410128, China; (H.G.); (M.D.)
- Maize Engineering Technology Research Center of Hunan Province, Changsha 410128, China
| | - Bin Tang
- Crop Research Institute, Hunan Academy of Agricultural Sciences, Changsha 410125, China; (H.L.); (Z.C.); (Q.Z.); (Z.C.)
| |
Collapse
|
11
|
Mittra PK, Roy SK, Rahman MA, Naimuzzaman M, Kwon SJ, Yun SH, Cho K, Katsube-Tanaka T, Shiraiwa T, Woo SH. Proteome insights of citric acid-mediated cadmium toxicity tolerance in Brassica napus L. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:115461-115479. [PMID: 37882925 DOI: 10.1007/s11356-023-30442-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2023] [Accepted: 10/09/2023] [Indexed: 10/27/2023]
Abstract
Cadmium (Cd) is a toxic substance that is uptake by plants from soils, Cd easily transfers into the food chain. Considering global food security, eco-friendly, cost-effective, and metal detoxification strategies are highly demandable for sustainable food crop production. The purpose of this study was to investigate how citric acid (CA) alleviates or tolerates Cd toxicity in Brassica using a proteome approach. In this study, the global proteome level was significantly altered under Cd toxicity with or without CA supplementation in Brassica. A total of 4947 proteins were identified using the gel-free proteome approach. Out of these, 476 proteins showed differential abundance between the treatment groups, wherein 316 were upregulated and 160 were downregulated. The gene ontology analysis reveals that differentially abundant proteins were involved in different biological processes including energy and carbohydrate metabolism, CO2 assimilation and photosynthesis, signal transduction and protein metabolism, antioxidant defense, heavy metal detoxification, plant development, and cytoskeleton and cell wall structure in Brassica leaves. Interestingly, several candidate proteins such as superoxide dismutase (A0A078GZ68) L-ascorbate peroxidase 3 (A0A078HSG4), glutamine synthetase (A0A078HLB2), glutathione S-transferase DHAR1 (A0A078HPN8), glutamine synthetase (A0A078HLB2), cysteine synthase (A0A078GAD3), S-adenosylmethionine synthase 2 (A0A078JDL6), and thiosulfate/3-mercaptopyruvate sulfur transferase 2 (A0A078H905) were involved in antioxidant defense system and sulfur assimilation-involving Cd-detoxification process in Brassica. These findings provide new proteome insights into CA-mediated Cd-toxicity alleviation in Brassica, which might be useful to oilseed crop breeders for enhancing heavy metal tolerance in Brassica using the breeding program, with sustainable and smart Brassica production in a metal-toxic environment.
Collapse
Affiliation(s)
- Probir Kumar Mittra
- Department of Crop Science, Chungbuk National University, Cheong-Ju, 28644, Republic of Korea
| | - Swapan Kumar Roy
- College of Agricultural Sciences, IUBAT-International University of Business Agriculture and Technology, 4 Embankment Drive Road, Sector 10 Uttara Model Town, Dhaka, 1230, Bangladesh
| | - Md Atikur Rahman
- Grassland and Forage Division, Rural Development Administration, National Institute of Animal Science, Cheonan, 31000, Republic of Korea
| | - Mollah Naimuzzaman
- College of Agricultural Sciences, IUBAT-International University of Business Agriculture and Technology, 4 Embankment Drive Road, Sector 10 Uttara Model Town, Dhaka, 1230, Bangladesh
| | - Soo-Jeong Kwon
- Department of Crop Science, Chungbuk National University, Cheong-Ju, 28644, Republic of Korea
| | - Sung Ho Yun
- Bio-Chemical Analysis Team, Center for Research Equipment, Korea Basic Science Institute, Ochang, Cheong-Ju, 28119, Republic of Korea
| | - Kun Cho
- Bio-Chemical Analysis Team, Center for Research Equipment, Korea Basic Science Institute, Ochang, Cheong-Ju, 28119, Republic of Korea
| | - Tomoyuki Katsube-Tanaka
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-Cho, Sakyo-Ku, Kyoto, 606-8502, Japan
| | - Tatsuhiko Shiraiwa
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-Cho, Sakyo-Ku, Kyoto, 606-8502, Japan
| | - Sun-Hee Woo
- Department of Crop Science, Chungbuk National University, Cheong-Ju, 28644, Republic of Korea.
| |
Collapse
|
12
|
Jiang Y, Wei C, Jiao Q, Li G, Alyemeni MN, Ahmad P, Shah T, Fahad S, Zhang J, Zhao Y, Liu F, Liu S, Liu H. Interactive effect of silicon and zinc on cadmium toxicity alleviation in wheat plants. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131933. [PMID: 37421854 DOI: 10.1016/j.jhazmat.2023.131933] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 06/12/2023] [Accepted: 06/23/2023] [Indexed: 07/10/2023]
Abstract
Silicon (Si) and Zinc (Zn) have been frequently used to alleviate cadmium (Cd) toxicity, which are feasible strategies for crop safety production. However, the mechanisms underlying the interaction of Si and Zn on alleviating Cd toxicity are not well understood. A hydroponic system was adopted to evaluate morphological, physiological-biochemical responses, and related gene expression of wheat seedlings to Si (1 mM) and Zn (50 µM) addition under Cd stress (10 µM). Cd induced obvious inhibition of wheat growth by disturbing photosynthesis and chlorophyll synthesis, provoking generation of reactive oxygen species (ROS) and interfering ion homeostasis. Cd concentration was decreased by 68.3%, 43.1% and 73.3% in shoot, and 78.9%, 44.1% and 85.8% in root by Si, Zn, and combination of Si with Zn, relative to Cd only, respectively. Si and Zn effectively ameliorated Cd toxicity and enhanced wheat growth; but single Si or combination of Si with Zn had more efficient ability on alleviating Cd stress than only Zn, indicating Si and Zn have synergistic effect on Cd toxicity; Interaction of them alleviated oxidative stress by reducing ROS content, improving AsA-GSH cycle and antioxidant enzymes activities, and regulating Cd into vacuole through PC-Cd complexes transported by HMA3 transporter. Our results suggest that fertilizers including Si and Zn should be made to reduce Cd content, which will beneficial for food production and safety.
Collapse
Affiliation(s)
- Ying Jiang
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Chang Wei
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Qiujuan Jiao
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Gezi Li
- National Engineering Research Center for Wheat, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Mohammed Nasser Alyemeni
- Botany and Microbiology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Parvaiz Ahmad
- Department of Botany, GDC Pulwama, 192301 Jammu and Kashmir, India
| | - Tariq Shah
- Plant Science Research Unit, United States Department for Agriculture (USDA), ARS, Raleigh, NC, USA
| | - Shah Fahad
- Department of Agronomy, Abdul Wali Khan University Mardan, Khyber Pakhtunkhwa 23200, Pakistan
| | - Jingjing Zhang
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Ying Zhao
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Fang Liu
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Shiliang Liu
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China
| | - Haitao Liu
- College of Resources and Environment, Henan Agricultural University, Zhengzhou 450046, PR China.
| |
Collapse
|
13
|
Zheng X, Zhang B, Pan N, Cheng X, Lu W. Hydrogen Sulfide Alleviates Cadmium Stress by Enhancing Photosynthetic Efficiency and Regulating Sugar Metabolism in Wheat Seedlings. PLANTS (BASEL, SWITZERLAND) 2023; 12:2413. [PMID: 37446974 DOI: 10.3390/plants12132413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 06/15/2023] [Accepted: 06/20/2023] [Indexed: 07/15/2023]
Abstract
Hydrogen sulfide (H2S) plays prominent multifunctional roles in the mediation of various physiological processes and stress responses to plants. In this study, hydroponic experiments were carried out to explore the effects of NaHS pretreatment on the growth of wheat (Triticum aestivum L.) under 50 μM cadmium (Cd). Compared with Cd treatment alone, 50 μM NaHS pretreatment increased the plant height, soluble sugar content of shoots and roots, and dry weight of shoots and roots under Cd stress, while the Cd concentration of shoots and roots was significantly reduced by 18.1% and 25.9%, respectively. Meanwhile, NaHS pretreatment protected the photosynthetic apparatus by increasing the net photosynthetic rate and PSII electron transportation rate of wheat leaves under Cd stress. NaHS pretreatment significantly increased the soluble sugar content to maintain the osmotic pressure balance of the leaf cells. The gene expression results associated with photosynthetic carbon assimilation and sucrose synthesis in wheat leaves suggested that the NaHS pretreatment significantly up-regulated the expression of TaRBCL, TaRBCS, and TaPRK, while it down-regulated the expression of TaFBA, TaSuSy, TaSAInv, and TaA/NInv. In summary, NaHS pretreatment improved the resistance of wheat seedlings under Cd stress by increasing the rate of photosynthesis and regulating the expression of genes related to sugar metabolism.
Collapse
Affiliation(s)
- Xiang Zheng
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Bei Zhang
- College of Life Sciences, Westlake University, Hangzhou 310000, China
| | - Ni Pan
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Xue Cheng
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Wei Lu
- College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, China
| |
Collapse
|
14
|
Ghuge SA, Nikalje GC, Kadam US, Suprasanna P, Hong JC. Comprehensive mechanisms of heavy metal toxicity in plants, detoxification, and remediation. JOURNAL OF HAZARDOUS MATERIALS 2023; 450:131039. [PMID: 36867909 DOI: 10.1016/j.jhazmat.2023.131039] [Citation(s) in RCA: 44] [Impact Index Per Article: 44.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 02/07/2023] [Accepted: 02/17/2023] [Indexed: 06/18/2023]
Abstract
Natural and anthropogenic causes are continually growing sources of metals in the ecosystem; hence, heavy metal (HM) accumulation has become a primary environmental concern. HM contamination poses a serious threat to plants. A major focus of global research has been to develop cost-effective and proficient phytoremediation technologies to rehabilitate HM-contaminated soil. In this regard, there is a need for insights into the mechanisms associated with the accumulation and tolerance of HMs in plants. It has been recently suggested that plant root architecture has a critical role in the processes that determine sensitivity or tolerance to HMs stress. Several plant species, including those from aquatic habitats, are considered good hyperaccumulators for HM cleanup. Several transporters, such as the ABC transporter family, NRAMP, HMA, and metal tolerance proteins, are involved in the metal acquisition mechanisms. Omics tools have shown that HM stress regulates several genes, stress metabolites or small molecules, microRNAs, and phytohormones to promote tolerance to HM stress and for efficient regulation of metabolic pathways for survival. This review presents a mechanistic view of HM uptake, translocation, and detoxification. Sustainable plant-based solutions may provide essential and economical means of mitigating HM toxicity.
Collapse
Affiliation(s)
- Sandip A Ghuge
- Agricultural Research Organization (ARO), The Volcani Institute, P.O. Box 15159, 7505101 Rishon LeZion, Israel
| | - Ganesh Chandrakant Nikalje
- Division of Life Science and Division of Applied Life Science (BK21 Four), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Gyeongnam 52828, South Korea; Department of Botany, Seva Sadan's R. K. Talreja College of Arts, Science and Commerce, Affiliated to University of Mumbai, Ulhasnagar 421003, India
| | - Ulhas Sopanrao Kadam
- Division of Life Science and Division of Applied Life Science (BK21 Four), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Gyeongnam 52828, South Korea.
| | - Penna Suprasanna
- Amity Centre for Nuclear Biotechnology, Amity Institute of Biotechnology, Amity University Maharashtra, Mumbai 410206, India
| | - Jong Chan Hong
- Division of Life Science and Division of Applied Life Science (BK21 Four), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, Gyeongnam 52828, South Korea; Division of Plant Sciences, University of Missouri, Columbia, MO 65211, USA.
| |
Collapse
|
15
|
Niu L, Li C, Wang W, Zhang J, Scali M, Li W, Liu H, Tai F, Hu X, Wu X. Cadmium tolerance and hyperaccumulation in plants - A proteomic perspective of phytoremediation. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 256:114882. [PMID: 37037105 DOI: 10.1016/j.ecoenv.2023.114882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2022] [Revised: 02/27/2023] [Accepted: 04/04/2023] [Indexed: 06/19/2023]
Abstract
Cadmium (Cd) is a major environmental pollutant and poses a risk of transfer into the food chain through contaminated plants. Mechanisms underlying Cd tolerance and hyperaccumulation in plants are not fully understood. Proteomics-based approaches facilitate an in-depth understanding of plant responses to Cd stress at the systemic level by identifying Cd-inducible differentially abundant proteins (DAPs). In this review, we summarize studies related to proteomic changes associated with Cd-tolerance mechanisms in Cd-tolerant crops and Cd-hyperaccumulating plants, especially the similarities and differences across plant species. The enhanced DAPs identified through proteomic studies can be potential targets for developing Cd-hyperaccumulators to remediate Cd-contaminated environments and Cd-tolerant crops with low Cd content in the edible organs. This is of great significance for ensuring the food security of an exponentially growing global population. Finally, we discuss the methodological drawbacks in current proteomic studies and propose that better protocols and advanced techniques should be utilized to further strengthen the reliability and applicability of future Cd-stress-related studies in plants. This review provides insights into the improvement of phytoremediation efficiency and an in-depth study of the molecular mechanisms of Cd enrichment in plants.
Collapse
Affiliation(s)
- Liangjie Niu
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| | - Chunyang Li
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| | - Wei Wang
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China.
| | - Jinghua Zhang
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| | - Monica Scali
- Department of Life Sciences, University of Siena, Siena, Italy
| | - Weiqiang Li
- Jilin Da'an Agro-ecosystem National Observation Research Station, Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Hui Liu
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| | - Fuju Tai
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| | - Xiuli Hu
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| | - Xiaolin Wu
- National Key Laboratory of Wheat and Maize Crop Science, College of Life Sciences, Henan Agricultural University, Zhengzhou, China
| |
Collapse
|
16
|
Zhang D, Liu J, Zhang Y, Wang H, Wei S, Zhang X, Zhang D, Ma H, Ding Q, Ma L. Morphophysiological, proteomic and metabolomic analyses reveal cadmium tolerance mechanism in common wheat (Triticum aestivum L.). JOURNAL OF HAZARDOUS MATERIALS 2023; 445:130499. [PMID: 36455318 DOI: 10.1016/j.jhazmat.2022.130499] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 11/18/2022] [Accepted: 11/24/2022] [Indexed: 06/17/2023]
Abstract
Soil cadmium (Cd) contamination can reduce wheat yield and quality, thus threatening food security and human health. Herein, morphological physiology, Cd accumulation and distribution, proteomic and metabolomic analyses were performed (using wheat cultivars 'Luomai23' (LM, Cd-sensitive) and 'Zhongyu10' (ZY, Cd-tolerant) at the seedling stage with sand culture) to reveal Cd tolerance mechanism. Cd inhibited wheat growth, caused oxidative stress, hindered carbon and nitrogen metabolism, and altered the quantity and composition of root exudates. The root Cd concentration was lower in ZY than in LM by about 35% under 15 μM Cd treatments. ZY reduced Cd uptake through root exudation of amino acids and alkaloids. ZY also reduced Cd accumulation through specific up-regulation (twice) of major facilitator superfamily (MFS) proteins. Furthermore, ZY enhanced Cd cell wall fixation and vacuolar compartmentalization by increasing pectin contents, hemicellulose1 contents, and adenosine triphosphate binding cassette subfamily C member 1 (ABCC1) transporter expression, thus reducing the Cd organelle fraction of ZY by about 12% and 44% in root and shoot, respectively, compared with LM. Additionally, ZY had enhanced resilience to Cd due to increased antioxidant capacity, plasma membrane stability, nitrogen metabolism, and endoplasmic reticulum homeostasis, indicating that the increased Cd tolerance could be because of multi-level coordination. These findings provide a reference for exploring the molecular mechanism of Cd tolerance and accumulation, providing a basis for safe utilization of Cd-contaminated soil by breeding Cd-tolerant and low Cd-accumulating wheat varieties.
Collapse
Affiliation(s)
- Dazhong Zhang
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Jiajia Liu
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Yuanbo Zhang
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Hairong Wang
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Shuwei Wei
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Xu Zhang
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Ding Zhang
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Haosen Ma
- College of Agronomy, Northwest A&F University, Yangling 712100, China
| | - Qin Ding
- College of Horticulture, Northwest A&F University, Yangling 712100, China
| | - Lingjian Ma
- College of Agronomy, Northwest A&F University, Yangling 712100, China.
| |
Collapse
|
17
|
Ou C, Cheng W, Wang Z, Yao X, Yang S. Exogenous melatonin enhances Cd stress tolerance in Platycladus orientalis seedlings by improving mineral nutrient uptake and oxidative stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 252:114619. [PMID: 36753967 DOI: 10.1016/j.ecoenv.2023.114619] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 01/16/2023] [Accepted: 02/05/2023] [Indexed: 05/26/2023]
Abstract
The development of agriculture and industry has led to a gradual increase in the levels of cadmium (Cd) in the soil, which, due to its high mobility in soil, makes Cd deposition in plants a serious threat to the health of animals and humans. The important role of melatonin (MT) in regulating plant growth and adaptation to environmental stress has become a pertinent research topic, but the mechanisms of action of MT in Cd-stressed Platycladus orientalis seedlings are unclear. Here, we investigated the mitigation mechanism of exogenous MT application on P. orientalis seedlings under Cd stress. Cd stress significantly inhibited the growth of P. orientalis seedlings by disrupting photosynthetic pigments, mineral balance, osmotic balance, and oxidative balance. In contrast, the application of exogenous MT significantly increased the growth parameters of P. orientalis seedlings, reduced Cd accumulation and transfer in the seedlings, increased the content of iron, manganese, zinc, copper, chlorophyll, soluble protein, soluble sugar, and proline, reduced the content of glutathione, increased the activities of superoxide dismutase and peroxidase, and significantly enhanced the expression of antioxidant-related genes (POD, GST, and APX). It also effectively reduced the content of hydrogen peroxide and malondialdehyde to inhibit the production of reactive oxygen species, thus alleviating Cd-induced oxidative stress. In addition, MT significantly upregulated the expression of the ethanol dehydrogenase (ADH) gene, which is effective in removing the acetaldehyde produced by anaerobic respiration in seedlings under stress, thereby reducing the toxic effects on P. orientalis. The results showed that exogenous MT enhanced the tolerance of P. orientalis seedlings to Cd stress by regulating photosynthesis, mineral balance, osmotic balance, and the antioxidant system and that the optimal concentration of MT was 200 μmol·L-1.
Collapse
Affiliation(s)
- Chun Ou
- Engineering Technology Research Center of Anti-aging Chinese Herbal Medicine, School of Biology and Food Engineering, Fuyang Normal University, Fuyang, Anhui 236037, China
| | - Wenhui Cheng
- Engineering Technology Research Center of Anti-aging Chinese Herbal Medicine, School of Biology and Food Engineering, Fuyang Normal University, Fuyang, Anhui 236037, China
| | - Zelu Wang
- Engineering Technology Research Center of Anti-aging Chinese Herbal Medicine, School of Biology and Food Engineering, Fuyang Normal University, Fuyang, Anhui 236037, China
| | - Xiamei Yao
- School of Architecture and Urban Planning, Anhui Jianzhu University, Hefei, Anhui 230601, China.
| | - Shengmei Yang
- Engineering Technology Research Center of Anti-aging Chinese Herbal Medicine, School of Biology and Food Engineering, Fuyang Normal University, Fuyang, Anhui 236037, China
| |
Collapse
|
18
|
Liu J, Kang H, Tao W, Li H, He D, Ma L, Tang H, Wu S, Yang K, Li X. A spatial distribution - Principal component analysis (SD-PCA) model to assess pollution of heavy metals in soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 859:160112. [PMID: 36375553 DOI: 10.1016/j.scitotenv.2022.160112] [Citation(s) in RCA: 29] [Impact Index Per Article: 29.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 11/04/2022] [Accepted: 11/06/2022] [Indexed: 06/16/2023]
Abstract
With the rapid development of urbanization, heavy metal pollution of soil has received great attention. Over-enrichment of heavy metals in soil may endanger human health. Assessing soil pollution and identifying potential sources of heavy metals are crucial for prevention and control of soil heavy metal pollution. This study introduced a spatial distribution - principal component analysis (SD-PCA) model that couples the spatial attributes of soil pollution with linear data transformation by the eigenvector-based principal component analysis. By evaluating soil pollution in the spatial dimension it identifies the potential sources of heavy metals more easily. In this study, soil contamination by eight heavy metals was investigated in the Lintong District, a typical multi-source urban area in Northwest China. In general, the soils in the study area were lightly contaminated by Cr and Pb. Pearson correlation analysis showed that Cr was negatively correlated with other heavy metals, whereas the spatial autocorrelation analysis revealed that there was strong association in the spatial distribution of eight heavy metals. The aggregation forms were more varied and the correlation between Cr contamination and other heavy metals was lower. The aggregation forms of Mn and Cu, Zn and Pb, on the other hand, were remarkably comparable. Agriculture was the largest pollution source, contributing 65.5 % to soil pollution, which was caused by the superposition of multiple heavy metals. Additionally, traffic and natural pollution sources contributed 17.9 % and 11.1 %, respectively. The ability of this model to track pollution of heavy metals has important practical significance for the assessment and control of multi-source soil pollution.
Collapse
Affiliation(s)
- Jiawei Liu
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China
| | - Hou Kang
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China.
| | - Wendong Tao
- Department of Environmental Resources Engineering, College of Environmental Science and Forestry, State University of New York, 1 Forestry Drive, Syracuse, NY 13210, USA.
| | - Hanyu Li
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China
| | - Dan He
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China
| | - Lixia Ma
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China
| | - Haojie Tang
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China
| | - Siqi Wu
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China
| | - Kexin Yang
- School of Environmental and Chemical Engineering, Xi'an Polytechnic University, Xi'an 710048, China
| | - Xuxiang Li
- School of Human Settlements and Civil Engineering, Xi'an Jiao Tong University, Xi'an 710049, China
| |
Collapse
|
19
|
Zhou M, Zheng S. Multi-Omics Uncover the Mechanism of Wheat under Heavy Metal Stress. Int J Mol Sci 2022; 23:ijms232415968. [PMID: 36555610 PMCID: PMC9785819 DOI: 10.3390/ijms232415968] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 12/08/2022] [Accepted: 12/13/2022] [Indexed: 12/23/2022] Open
Abstract
Environmental pollution of heavy metals has received growing attention in recent years. Heavy metals such as cadmium, lead and mercury can cause physiological and morphological disturbances which adversely affect the growth and quality of crops. Wheat (Triticum aestivum L.) can accumulate high contents of heavy metals in its edible parts. Understanding wheat response to heavy metal stress and its management in decreasing heavy metal uptake and accumulation may help to improve its growth and grain quality. Very recently, emerging advances in heavy metal toxicity and phytoremediation methods to reduce heavy metal pollution have been made in wheat. Especially, the molecular mechanisms of wheat under heavy metal stress are increasingly being recognized. In this review, we focus on the recently described epigenomics, transcriptomics, proteomics, metabolomics, ionomics and multi-omics combination, as well as functional genes uncovering heavy metal stress in wheat. The findings in this review provide some insights into challenges and future recommendations for wheat under heavy metal stress.
Collapse
Affiliation(s)
- Min Zhou
- School of Life Sciences, Chongqing University, Chongqing 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
| | - Shigang Zheng
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| |
Collapse
|
20
|
Proteomic Changes in Paspalum fasciculatum Leaves Exposed to Cd Stress. PLANTS 2022; 11:plants11192455. [PMID: 36235321 PMCID: PMC9573290 DOI: 10.3390/plants11192455] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/11/2022] [Revised: 09/03/2022] [Accepted: 09/05/2022] [Indexed: 11/17/2022]
Abstract
(1) Background: Cadmium is a toxic heavy metal that is widely distributed in water, soil, and air. It is present in agrochemicals, wastewater, battery waste, and volcanic eruptions. Thus, it can be absorbed by plants and enter the trophic chain. P. fasciculatum is a plant with phytoremediation capacity that can tolerate Cd stress, but changes in its proteome related to this tolerance have not yet been identified. (2) Methods: We conducted a quantitative analysis of the proteins present in P. fasciculatum leaves cultivated under greenhouse conditions in mining soils doped with 0 mg kg−1 (control), 30 mg kg−1, or 50 mg kg−1. This was carried out using the label-free shotgun proteomics technique. In this way, we determined the changes in the proteomes of the leaves of these plants, which allowed us to propose some tolerance mechanisms involved in the response to Cd stress. (3) Results: In total, 329 variable proteins were identified between treatments, which were classified into those associated with carbohydrate and energy metabolism; photosynthesis; structure, transport, and metabolism of proteins; antioxidant stress and defense; RNA and DNA processing; and signal transduction. (4) Conclusions: Based on changes in the differences in the leaf protein profiles between treatments, we hypothesize that some proteins associated with signal transduction (Ras-related protein RABA1e), HSPs (heat shock cognate 70 kDa protein 2), growth (actin-7), and cellular development (actin-1) are part of the tolerance response to Cd stress.
Collapse
|
21
|
Rahman SU, Nawaz MF, Gul S, Yasin G, Hussain B, Li Y, Cheng H. State-of-the-art OMICS strategies against toxic effects of heavy metals in plants: A review. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 242:113952. [PMID: 35999767 DOI: 10.1016/j.ecoenv.2022.113952] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Revised: 08/01/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
Environmental pollution of heavy metals (HMs), mainly due to anthropogenic activities, has received growing attention in recent decades. HMs, especially the non-essential carcinogenic ones, including chromium (Cr), cadmium (Cd), mercury (Hg), aluminum (Al), lead (Pb), and arsenic (As), have appeared as the most significant air, water, and soil pollutants, which adversely affect the quantity, quality, and security of plant-based food all over the world. Plants exposed to HMs could experience significant decline in growth and yield. To avoid or tolerate the toxic effects of HMs, plants have developed complicated defense mechanisms, including absorption and accumulation of HMs in cell organelles, immobilization by forming complexes with organic chelates, extraction by using numerous transporters, ion channels, signalling cascades, and transcription elements, among others. OMICS strategies have developed significantly to understand the mechanisms of plant transcriptomics, genomics, proteomics, metabolomics, and ionomics to counter HM-mediated stress stimuli. These strategies have been considered to be reliable and feasible for investigating the roles of genomics (genomes), transcriptomic (coding), mRNA transcripts (non-coding), metabolomics (metabolites), and ionomics (metal ions) to enhance stress resistance or tolerance in plants. The recent developments in the mechanistic understandings of the HMs-plant interaction in terms of their absorption, translocation, and toxicity invasions at the molecular and cellular levels, as well as plants' response and adaptation strategies against these stressors, are summarized in the present review. Transcriptomics, genomics, metabolomics, proteomics, and ionomics for plants against HMs toxicities are reviewed, while challenges and future recommendations are also discussed.
Collapse
Affiliation(s)
- Shafeeq Ur Rahman
- School of Environment and Civil Engineering, Dongguan University of Technology, Dongguan, Guangdong 523808, China; MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Muhammad Farrakh Nawaz
- Department of Forestry and Range Management, University of Agricultureó, Faisalabad, Pakistan
| | - Sadaf Gul
- Department of Botany, University of Karachi, Karachi, Pakistan
| | - Ghulam Yasin
- Department of Forestry and Range Management, Bahauddin Zakariya University Multan, Pakistan
| | - Babar Hussain
- Department of Plant Science Karakoram International University (KIU), Gilgit 15100, Gilgit-Baltistan, Pakistan
| | - Yanliang Li
- School of Environment and Civil Engineering, Dongguan University of Technology, Dongguan, Guangdong 523808, China; Dongguan Key Laboratory of Water Pollution and Ecological Safety Regulation, Dongguan, Guangdong 523808, China.
| | - Hefa Cheng
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China.
| |
Collapse
|
22
|
Wheat Proteomics for Abiotic Stress Tolerance and Root System Architecture: Current Status and Future Prospects. Proteomes 2022; 10:proteomes10020017. [PMID: 35645375 PMCID: PMC9150004 DOI: 10.3390/proteomes10020017] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 05/03/2022] [Accepted: 05/11/2022] [Indexed: 02/06/2023] Open
Abstract
Wheat is an important staple cereal for global food security. However, climate change is hampering wheat production due to abiotic stresses, such as heat, salinity, and drought. Besides shoot architectural traits, improving root system architecture (RSA) traits have the potential to improve yields under normal and stressed environments. RSA growth and development and other stress responses involve the expression of proteins encoded by the trait controlling gene/genes. Hence, mining the key proteins associated with abiotic stress responses and RSA is important for improving sustainable yields in wheat. Proteomic studies in wheat started in the early 21st century using the two-dimensional (2-DE) gel technique and have extensively improved over time with advancements in mass spectrometry. The availability of the wheat reference genome has allowed the exploration of proteomics to identify differentially expressed or abundant proteins (DEPs or DAPs) for abiotic stress tolerance and RSA improvement. Proteomics contributed significantly to identifying key proteins imparting abiotic stress tolerance, primarily related to photosynthesis, protein synthesis, carbon metabolism, redox homeostasis, defense response, energy metabolism and signal transduction. However, the use of proteomics to improve RSA traits in wheat is in its infancy. Proteins related to cell wall biogenesis, carbohydrate metabolism, brassinosteroid biosynthesis, and transportation are involved in the growth and development of several RSA traits. This review covers advances in quantification techniques of proteomics, progress in identifying DEPs and/or DAPs for heat, salinity, and drought stresses, and RSA traits, and the limitations and future directions for harnessing proteomics in wheat improvement.
Collapse
|
23
|
Zhou M, Li Z. Recent Advances in Minimizing Cadmium Accumulation in Wheat. TOXICS 2022; 10:toxics10040187. [PMID: 35448448 PMCID: PMC9025478 DOI: 10.3390/toxics10040187] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 04/08/2022] [Accepted: 04/11/2022] [Indexed: 01/14/2023]
Abstract
Cadmium (Cd), a toxic heavy metal, affects the yield and quality of crops. Wheat (Triticum aestivum L.) can accumulate high Cd content in the grain, which poses a major worldwide hazard to human health. Advances in our understanding of Cd toxicity for plants and humans, different parameters influencing Cd uptake and accumulation, as well as phytoremediation technologies to relieve Cd pollution in wheat have been made very recently. In particular, the molecular mechanisms of wheat under Cd stress have been increasingly recognized. In this review, we focus on the recently described omics and functional genes uncovering Cd stress, as well as different mitigation strategies to reduce Cd toxicity in wheat.
Collapse
Affiliation(s)
- Min Zhou
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
- Correspondence: (M.Z.); (Z.L.)
| | - Zhengguo Li
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
- Correspondence: (M.Z.); (Z.L.)
| |
Collapse
|
24
|
Kadiene EU, Ouddane B, Gong HY, Hwang JS, Souissi S. Multigenerational study of life history traits, bioaccumulation, and molecular responses of Pseudodiaptomus annandalei to cadmium. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 230:113171. [PMID: 34999339 DOI: 10.1016/j.ecoenv.2022.113171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 12/28/2021] [Accepted: 01/03/2022] [Indexed: 06/14/2023]
Abstract
Metal pollution provide a substantial challenge for environmental health. This study investigated the multigeneration effects of cadmium on populations of the copepod species Pseudodiaptomus annandalei, exposed to a sublethal concentration, 40 µg/L of cadmium (Cd), over 10 generations. At the end of each generation, copepod individuals were collected to estimate fecundity, bioaccumulation, and real time qPCR quantification of selected differentially expressed genes to evaluate Cd effects and sex-specific responses of copepods across multiple generations. Our results revealed a sex-specific accumulation of Cd integrating 10 successive generations. The concentration of Cd was significantly higher (p < 0.05) in males than in females. We also observed a generational increase in Cd accumulation. Fecundity increased, with the exception of the first generation, possibly as a compensation for a decrease of copepod population size under Cd exposure. Protein expression of copepods exposed to Cd occurred in a sex-specific manner. Hemerythrin was mostly up-regulated in both copepod sexes exposed to Cd with males having the highest expression levels, while heat shock protein 70 was mostly up-regulated in males and down-regulated in female copepods, both exposed to Cd. Although copepods are known to develop adaptive mechanisms to tolerate toxic chemicals, continuous exposure to metals could lead to the bioaccumulation of metals in their offspring through maternal transfer and direct uptake from the medium over several generations. As a consequence, increased metal concentrations in copepods could result in physiological damage, reducing their fitness, and possibly compromise copepod population structures. This study showed that mortality, life history traits and molecular responses of a copepod species provided important toxicological endpoints and bio-markers for environmental risk assessments. Environmental pressure resulting from continuous exposure to persistent pollutants like Cd, could have evolutionary significance. The tendency for copepods to selectively adapt to a toxic environment through modifications, could increase their chance of survival over a long term.
Collapse
Affiliation(s)
- Esther U Kadiene
- Univ. Lille, CNRS, Univ. Littoral Côte d'Opale, IRD, UMR 8187 - LOG - Laboratoire d'Océanologie et de Géosciences, Station Marine de Wimereux, F-59000 Lille, France; Institute of Marine Biology, National Taiwan Ocean University, 20224 Keelung, Taiwan
| | - Baghdad Ouddane
- Université de Lille, Equipe Physico-Chimie de l'Environnement, Laboratoire LASIR UMR CNRS 8516, 59655 Villeneuve d'Ascq Cedex, France
| | - Hong-Yi Gong
- Department of Aquaculture, National Taiwan Ocean University, Keelung 20224, Taiwan; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung 20224, Taiwan
| | - Jiang-Shiou Hwang
- Institute of Marine Biology, National Taiwan Ocean University, 20224 Keelung, Taiwan; Center of Excellence for Ocean Engineering, National Taiwan Ocean University, Keelung 20224, Taiwan; Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung 20224, Taiwan.
| | - Sami Souissi
- Univ. Lille, CNRS, Univ. Littoral Côte d'Opale, IRD, UMR 8187 - LOG - Laboratoire d'Océanologie et de Géosciences, Station Marine de Wimereux, F-59000 Lille, France.
| |
Collapse
|
25
|
Kiiskila JD, Sarkar D, Datta R. Differential protein abundance of vetiver grass in response to acid mine drainage. PHYSIOLOGIA PLANTARUM 2021; 173:829-842. [PMID: 34109636 DOI: 10.1111/ppl.13477] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Revised: 05/27/2021] [Accepted: 06/07/2021] [Indexed: 06/12/2023]
Abstract
Acid mine drainage (AMD) is an acidic and metalliferous discharge that imposes oxidative stress on living things through bioaccumulation and physical exposure. The abandoned Tab-Simco mining site of Southern Illinois generates highly acidic AMD with elevated sulfate (SO4 2- ) and various metals. Vetiver grass (Chrysopogon zizanioides) is effective for the remediation of Tab-Simco AMD at both mesocosm and microcosm levels over extended periods. In this study, we conducted a proteomic investigation of vetiver shoots under short and long-term exposure to AMD. Our objective was to decipher the physiological responses of vetiver to the combined abiotic stresses of AMD (metal and low pH). Differential regulation was observed for longer-term (56 days) exposure to AMD, which resulted in 17 upregulated and nine downregulated proteins, whereas shorter-term (7 days) exposure led to 14 upregulated and 14 downregulated proteins. There were significant changes to photosynthesis, including upregulation of electron transport chain proteins for light-dependent reactions after 56 days, whereas differential regulation of enzymes relating to C4 carbon fixation was observed after 7 days. Significant changes in amino acid and nitrogen metabolism, including upregulation of ethylene and flavonoid biosynthesis, along with plant response to nitrogen starvation, were observed. Short-term changes also included upregulation of glutathione reductase and methionine sulfoxide reductase, whereas longer-term changes included changes in protein misfolding and ER-associated protein degradation for stress management and acclimation.
Collapse
Affiliation(s)
- Jeffrey D Kiiskila
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, USA
- Department of Natural Sciences, Chadron State College, Chadron, Nebraska, USA
| | - Dibyendu Sarkar
- Department of Civil, Environmental, and Ocean Engineering, Stevens Institute of Technology, Hoboken, New Jersey, USA
| | - Rupali Datta
- Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, USA
| |
Collapse
|
26
|
Luyckx M, Hausman JF, Sergeant K, Guerriero G, Lutts S. Molecular and Biochemical Insights Into Early Responses of Hemp to Cd and Zn Exposure and the Potential Effect of Si on Stress Response. FRONTIERS IN PLANT SCIENCE 2021; 12:711853. [PMID: 34539703 PMCID: PMC8446647 DOI: 10.3389/fpls.2021.711853] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Accepted: 07/26/2021] [Indexed: 06/13/2023]
Abstract
With the intensification of human activities, plants are more frequently exposed to heavy metals (HM). Zinc (Zn) and cadmium (Cd) are frequently and simultaneously found in contaminated soils, including agronomic soils contaminated by the atmospheric fallout near smelters. The fiber crop Cannabis sativa L. is a suitable alternative to food crops for crop cultivation on these soils. In this study, Cd (20 μM) and Zn (100 μM) were shown to induce comparable growth inhibition in C. sativa. To devise agricultural strategies aimed at improving crop yield, the effect of silicon (Si; 2 mM) on the stress tolerance of plants was considered. Targeted gene expression and proteomic analysis were performed on leaves and roots after 1 week of treatment. Both Cd- and Zn-stimulated genes involved in proline biosynthesis [pyrroline-5-carboxylate reductase (P5CR)] and phenylpropanoid pathway [phenylalanine ammonia-lyase (PAL)] but Cd also specifically increased the expression of PCS1-1 involved in phytochelatin (PC) synthesis. Si exposure influences the expression of numerous genes in a contrasting way in Cd- and Zn-exposed plants. At the leaf level, the accumulation of 122 proteins was affected by Cd, whereas 47 proteins were affected by Zn: only 16 proteins were affected by both Cd and Zn. The number of proteins affected due to Si exposure (27) alone was by far lower, and 12 were not modified by heavy metal treatment while no common protein seemed to be modified by both CdSi and ZnSi treatment. It is concluded that Cd and Zn had a clear different impact on plant metabolism and that Si confers a specific physiological status to stressed plants, with quite distinct impacts on hemp proteome depending on the considered heavy metal.
Collapse
Affiliation(s)
- Marie Luyckx
- Groupe de Recherche en Physiologie végétale, Earth and Life Institute – Agronomy (ELI-A), Université catholique de Louvain, Louvain-la-Neuve, Belgium
| | - Jean-François Hausman
- Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, Esch-sur-Alzette, Luxembourg
| | - Kjell Sergeant
- Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, Esch-sur-Alzette, Luxembourg
| | - Gea Guerriero
- Environmental Research and Innovation Department, Luxembourg Institute of Science and Technology, Esch-sur-Alzette, Luxembourg
| | - Stanley Lutts
- Groupe de Recherche en Physiologie végétale, Earth and Life Institute – Agronomy (ELI-A), Université catholique de Louvain, Louvain-la-Neuve, Belgium
| |
Collapse
|
27
|
Malik M, Mahmood S, Noreen S, Abid R, Ghaffar S, Zahra S, Shah T, Ahmad A. Lead contamination affects the primary productivity traits, biosynthesis of macromolecules and distribution of metal in durum wheat ( Triticumdurum L.). Saudi J Biol Sci 2021; 28:4946-4956. [PMID: 34466070 PMCID: PMC8381079 DOI: 10.1016/j.sjbs.2021.06.093] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 06/28/2021] [Accepted: 06/29/2021] [Indexed: 11/23/2022] Open
Abstract
Lead (Pb) pollution emerged as an international issue particularly during second and third industrial revolution and is of serious global concern. Cereal crops have shown different capabilities, innate variability and mechanisms to cope with heavy metals present in their environment. Keeping in view the perspectives of food security and safety with increasing demand for Triticum durum L. it becomes imperative to appraise sustainability potential of the crop for Pb contaminated soils. The current study was conducted to test the hypothesis that T. durum germplasm holds genetic variability to evolve under Pb contamination through modulations of morpho-biochemical parameters of selective advantage. The performance of nine T. durum L. cultivars (CBD25, CBD46, CBD58, CBD59, CBD63, CBD66, CBD68, CBD69 and CBD82) was evaluated following exposure to varying Pb levels (control, 10, 20 and 40 mg kg-1) in soil. Growth, biosynthesis of macromolecules and metal distribution in plant parts were assessed using valid procedures and protocols. The cultivars exhibited a differential degree of tolerance to Pb and among the tested germplasm, CBD59 performed better followed by CBD63 and CBD66 for their primary productivity traits, biosynthesis of pigments and other macromolecules (amino acids, proteins and sugar) along with resilience for Pb uptake and its consequent bioaccumulation in grains. The traits used in the study served as strong predictors to provide superior/selective ability to survive under contaminated environment. The study signified that metal tolerance/sensitivity in the cultivars is independent of magnitude of metal stress, growth responses and Pb accumulation in plant parts hence varied in space and time. The existence of genetic variability, which is a pre-requisite for selection can definitely be of great advantage for future breeding projects to develop high yielding varieties/ cultivars of durum wheat with Pb free grains to assure food security and safety.
Collapse
Affiliation(s)
- Mahwish Malik
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Seema Mahmood
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Sibgha Noreen
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Rafia Abid
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Shazia Ghaffar
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Saman Zahra
- Institute of Pure and Applied Biology, Bahauddin Zakariya University, Multan, Pakistan
| | - Tariq Shah
- Agroecology, Universite de Bourgogne, Dijon, France
| | - Ajaz Ahmad
- Department of Clinical Pharmacy, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
| |
Collapse
|
28
|
Han H, Zhang H, Qin S, Zhang J, Yao L, Chen Z, Yang J. Mechanisms of Enterobacter bugandensis TJ6 immobilization of heavy metals and inhibition of Cd and Pb uptake by wheat based on metabolomics and proteomics. CHEMOSPHERE 2021; 276:130157. [PMID: 33714158 DOI: 10.1016/j.chemosphere.2021.130157] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2020] [Revised: 02/25/2021] [Accepted: 02/28/2021] [Indexed: 06/12/2023]
Abstract
Microbial passivation remediation of heavy metal-contaminated farmland has attracted increasing attention. However, the molecular mechanism by which heavy metal-immobilizing bacteria inhibit the uptake of Cd and Pb by wheat is not clear. Herein, a heavy metal-immobilizing bacterium, Enterobacter bugandensis TJ6, was used to reveal its immobilization mechanisms of Cd and Pb and inhibition of Cd and Pb uptake by wheat using metabolomics and proteomics. Compared with the control, strain TJ6 significantly reduced (44.7%-56.6%) the Cd and Pb contents of wheat roots and leaves. Strain TJ6 reduced the Cd and Pb concentrations by adsorption, intracellular accumulation, and bioprecipitation in solution. Untargeted metabolomics showed that strain TJ6 produced indole-3-acetic acid (IAA), betaine, and arginine under Cd and Pb stress, significantly improving the resistance of strain TJ6 and wheat to Cd and Pb. Label-free proteomics showed that 143 proteins were upregulated and 61 proteins were downregulated in wheat roots in the presence of strain TJ6. The GO items of the differentially expressed proteins (DEPs) involved in protein-DNA complexes, DNA packaging complexes, and peroxidase activity were enriched. In addition, the ability of wheat roots to synthesize abscisic acid and jasmonic acid was improved. In conclusion, strain TJ6 reduced Cd and Pb uptake in wheat through its own adsorption of Cd and Pb and regulation of wheat root DNA repair ability, plant hormone levels, and antioxidant activities. These results provide new insights and a theoretical basis for the application of heavy metal-immobilizing bacteria in safe wheat production.
Collapse
Affiliation(s)
- Hui Han
- College of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, PR China; Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China
| | - Hao Zhang
- College of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, PR China
| | - Shanmei Qin
- College of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, PR China
| | - Jun Zhang
- College of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, PR China
| | - Lunguang Yao
- College of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, PR China
| | - Zhaojin Chen
- College of Life Sciences and Agricultural Engineering, Nanyang Normal University, Nanyang, 473061, PR China
| | - Jianjun Yang
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing, 100081, PR China.
| |
Collapse
|
29
|
Proteome Changes Reveal the Protective Roles of Exogenous Citric Acid in Alleviating Cu Toxicity in Brassica napus L. Int J Mol Sci 2021; 22:ijms22115879. [PMID: 34070927 PMCID: PMC8198124 DOI: 10.3390/ijms22115879] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 05/25/2021] [Accepted: 05/26/2021] [Indexed: 01/27/2023] Open
Abstract
Citric acid (CA), as an organic chelator, plays a vital role in alleviating copper (Cu) stress-mediated oxidative damage, wherein a number of molecular mechanisms alter in plants. However, it remains largely unknown how CA regulates differentially abundant proteins (DAPs) in response to Cu stress in Brassica napus L. In the present study, we aimed to investigate the proteome changes in the leaves of B. L. seedlings in response to CA-mediated alleviation of Cu stress. Exposure of 21-day-old seedlings to Cu (25 and 50 μM) and CA (1.0 mM) for 7 days exhibited a dramatic inhibition of overall growth and considerable increase in the enzymatic activities (POD, SOD, CAT). Using a label-free proteome approach, a total of 6345 proteins were identified in differentially treated leaves, from which 426 proteins were differentially expressed among the treatment groups. Gene ontology (GO) and KEGG pathways analysis revealed that most of the differential abundance proteins were found to be involved in energy and carbohydrate metabolism, photosynthesis, protein metabolism, stress and defense, metal detoxification, and cell wall reorganization. Our results suggest that the downregulation of chlorophyll biosynthetic proteins involved in photosynthesis were consistent with reduced chlorophyll content. The increased abundance of proteins involved in stress and defense indicates that these DAPs might provide significant insights into the adaptation of Brassica seedlings to Cu stress. The abundances of key proteins were further verified by monitoring the mRNA expression level of the respective transcripts. Taken together, these findings provide a potential molecular mechanism towards Cu stress tolerance and open a new route in accelerating the phytoextraction of Cu through exogenous application of CA in B. napus.
Collapse
|
30
|
Li X, Mao X, Xu Y, Li Y, Zhao N, Yao J, Dong Y, Tigabu M, Zhao X, Li S. Comparative transcriptomic analysis reveals the coordinated mechanisms of Populus × canadensis 'Neva' leaves in response to cadmium stress. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 216:112179. [PMID: 33798869 DOI: 10.1016/j.ecoenv.2021.112179] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 02/04/2021] [Accepted: 03/20/2021] [Indexed: 05/15/2023]
Abstract
Cadmium (Cd), a heavy metal element has strong toxicity to living organisms. Excessive Cd accumulation directly affects the absorption of mineral elements, inhibits plant tissue development, and even induces mortality. Populus × canadensis 'Neva', the main afforestation variety planted widely in northern China, was a candidate variety for phytoremediation. However, the genes relieving Cd toxicity and increasing Cd tolerance of this species were still unclear. In this study, we employed transcriptome sequencing on two Cd-treated cuttings to identify the key genes involved in Cd stress responses of P. × canadensis 'Neva' induced by 0 (CK), 10 (C10), and 20 (C20) mg/L Cd(NO3)2 4H2O. We discovered a total of 2,656 (1,488 up-regulated and 1,168 down-regulated) and 2,816 DEGs (1,470 up-regulated and 1,346 down-regulated) differentially expressed genes (DEGs) between the CK vs C10 and CK vs C20, respectively. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses in response to the Cd stress indicated that many DEGs identified were involved in the catalytic activity, the oxidoreductase activity, the transferase activity, and the biosynthesis of secondary metabolites. Based on the enrichment results, potential candidate genes were identified related to the calcium ion signal transduction, transcription factors, the antioxidant defense system, and transporters and showed divergent expression patterns under the Cd stress. We also validated the reliability of transcriptome data with the real-time PCR. Our findings deeper the understanding of the molecular responsive mechanisms of P. × canadensis 'Neva' on Cd tolerance and further provide critical resources for phytoremediation applications.
Collapse
Affiliation(s)
- Xiang Li
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Xiuhong Mao
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China
| | - Yujin Xu
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Yan Li
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Nan Zhao
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Junxiu Yao
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China
| | - Yufeng Dong
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China
| | - Mulualem Tigabu
- Southern Swedish Forest Research Centre, Swedish University of Agricultural Sciences, SE-230 53 Alnarp, Sweden.
| | - Xiyang Zhao
- State Key Laboratory of Tree Genetics and Breeding, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Shanwen Li
- Key Laboratory for Genetics and Breeding in Forest Trees of Shandong Province, Shandong Academy of Forestry, Jinan 250014, Shandong, China.
| |
Collapse
|