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Chandrasekar M, Collins JL, Habibi S, Ong RG. Microfluidic reactor designed for time-lapsed imaging of pretreatment and enzymatic hydrolysis of lignocellulosic biomass. BIORESOURCE TECHNOLOGY 2024; 393:129989. [PMID: 37931765 DOI: 10.1016/j.biortech.2023.129989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/25/2023] [Accepted: 11/03/2023] [Indexed: 11/08/2023]
Abstract
The effect of tissue-specific biochemical heterogeneities of lignocellulosic biomass on biomass deconstruction is best understood through confocal laser scanning microscopy (CLSM) combined with immunohistochemistry. However, this process can be challenging, given the fragility of plant materials, and is generally not able to observe changes in the same section of biomass during both pretreatment and enzymatic hydrolysis. To overcome this challenge, a custom polydimethylsiloxane (PDMS) microfluidic imaging reactor was constructed using standard photolithographic techniques. As proof of concept, CLSM was performed on 60 μm-thick corn stem sections during pretreatment and enzymatic hydrolysis using the imaging reactor. Based on the fluorescence images, the less lignified parenchyma cell walls were more susceptible to pretreatment than the lignin-rich vascular bundles. During enzymatic hydrolysis, the highly lignified protoxylem cell wall was the most resistant, remaining unhydrolyzed even after 48 h. Therefore, imaging thin whole biomass sections was useful to obtain tissue-specific changes during biomass deconstruction.
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Affiliation(s)
- Meenaa Chandrasekar
- Department of Chemical Engineering, Michigan Technological University, 1400 Townsend Drive, Houghton, 49931, MI, USA; DOE Great Lakes Bioenergy Research Center, Michigan Technological University, 1400 Townsend Drive, Houghton, 49931, MI, USA
| | - Jeana L Collins
- Department of Chemical Engineering, Michigan Technological University, 1400 Townsend Drive, Houghton, 49931, MI, USA
| | - Sanaz Habibi
- Department of Chemical Engineering, Michigan Technological University, 1400 Townsend Drive, Houghton, 49931, MI, USA
| | - Rebecca G Ong
- Department of Chemical Engineering, Michigan Technological University, 1400 Townsend Drive, Houghton, 49931, MI, USA; DOE Great Lakes Bioenergy Research Center, Michigan Technological University, 1400 Townsend Drive, Houghton, 49931, MI, USA.
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Patra M, Das D, Dey S, Koschella A, Heinze T. Structural and chemical insights into the prebiotic property of hemicellulosic polysaccharide from Santalum album L. Carbohydr Polym 2023; 321:121291. [PMID: 37739501 DOI: 10.1016/j.carbpol.2023.121291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 08/02/2023] [Accepted: 08/10/2023] [Indexed: 09/24/2023]
Abstract
Hemicellulose was extracted by alkali treatment of de-pectinated cell wall material of Santalum album L. (sandalwood) suspension culture cells. The physicochemical properties and prebiotic activities of a purified major fraction of Hemicellulose-B, termed as HB-I, were investigated. GC analysis of hydrolyzed and derivatized HB-I showed the presence of arabinose (~64 %), galactose (~16 %) and glucose (~16 %) as major monosaccharide units along with minor amount of rhamnose. Methylation and NMR studies on the purified polysaccharide revealed the presence of 6-β-d-Glcp, β-d-Galp, 3,5-α-l-Araf, α-l-Araf, 5-α-l-Araf, 2,3-α-l-Araf and, α-l-Rhap residues, from which a proposed structure of repeating units was established. The growth of probiotic Lactobacillus spp. strains L. acidophilus, L. casei, L. plantarum and L. rhamnosus was promoted while that of Escherichia coli was suppressed significantly in presence of HB-I. Our results highlight valorization of sandalwood biomass and explore the role of mixed α, β-linked heteroglycan as a potential prebiotic molecule thus indicating the possibility of development of low-cost bioprocesses for production of functional food ingredients.
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Affiliation(s)
- Moumita Patra
- Plant Biotechnology Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India
| | - Debsankar Das
- Department of Chemistry, Prabhat Kumar College, Contai, Purba Medinipur 721404, West Bengal, India.
| | - Satyahari Dey
- Plant Biotechnology Laboratory, Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India
| | - Andreas Koschella
- Friedrich Schiller University Jena, Institute for Organic Chemistry and Macromolecular Chemistry, Center of Excellence for Polysaccharide Research, Humboldtstraße 10, D-07743 Jena, Germany.
| | - Thomas Heinze
- Friedrich Schiller University Jena, Institute for Organic Chemistry and Macromolecular Chemistry, Center of Excellence for Polysaccharide Research, Humboldtstraße 10, D-07743 Jena, Germany.
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Østby H, Várnai A. Hemicellulolytic enzymes in lignocellulose processing. Essays Biochem 2023; 67:533-550. [PMID: 37068264 PMCID: PMC10160854 DOI: 10.1042/ebc20220154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 01/25/2023] [Accepted: 01/30/2023] [Indexed: 04/19/2023]
Abstract
Lignocellulosic biomass is the most abundant source of carbon-based material on a global basis, serving as a raw material for cellulosic fibers, hemicellulosic polymers, platform sugars, and lignin resins or monomers. In nature, the various components of lignocellulose (primarily cellulose, hemicellulose, and lignin) are decomposed by saprophytic fungi and bacteria utilizing specialized enzymes. Enzymes are specific catalysts and can, in many cases, be produced on-site at lignocellulose biorefineries. In addition to reducing the use of often less environmentally friendly chemical processes, the application of such enzymes in lignocellulose processing to obtain a range of specialty products can maximize the use of the feedstock and valorize many of the traditionally underutilized components of lignocellulose, while increasing the economic viability of the biorefinery. While cellulose has a rich history of use in the pulp and paper industries, the hemicellulosic fraction of lignocellulose remains relatively underutilized in modern biorefineries, among other reasons due to the heterogeneous chemical structure of hemicellulose polysaccharides, the composition of which varies significantly according to the feedstock and the choice of pretreatment method and extraction solvent. This paper reviews the potential of hemicellulose in lignocellulose processing with focus on what can be achieved using enzymatic means. In particular, we discuss the various enzyme activities required for complete depolymerization of the primary hemicellulose types found in plant cell walls and for the upgrading of hemicellulosic polymers, oligosaccharides, and pentose sugars derived from hemicellulose depolymerization into a broad spectrum of value-added products.
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Affiliation(s)
- Heidi Østby
- Norwegian University of Life Sciences (NMBU), Faculty of Chemistry, Biotechnology and Food Science, P.O. Box 5003, N-1432 Aas, Norway
| | - Anikó Várnai
- Norwegian University of Life Sciences (NMBU), Faculty of Chemistry, Biotechnology and Food Science, P.O. Box 5003, N-1432 Aas, Norway
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Lopez-Marnet PL, Guillaume S, Méchin V, Reymond M. A robust and efficient automatic method to segment maize FASGA stained stem cross section images to accurately quantify histological profile. PLANT METHODS 2022; 18:125. [PMID: 36424625 PMCID: PMC9694518 DOI: 10.1186/s13007-022-00957-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 11/11/2022] [Indexed: 06/16/2023]
Abstract
BACKGROUND Grasses internodes are made of distinct tissues such as vascular bundles, epidermis, rind and pith. The histology of grasses stem was largely revisited recently taking advantage of the development of microscopy combined with the development of computer-automated image analysis workflows. However, the diversity and complexity of the histological profile complicates quantification. Accurate and automated analysis of histological images thus remains challenging. RESULTS Herein, we present a workflow that automatically segments maize internode cross section images into 40 distinct tissues: two tissues in the epidermis, 19 tissues in the rind, 14 tissues in the pith and 5 tissues in the bundles. This level of segmentation is achieved by combining the Hue, Saturation and Value properties of each pixel and the location of each pixel in FASGA stained cross sectiona. This workflow is likewise able to highlight significant and subtle histological genotypic variations between maize internodes. The grain of precision provided by the workflow also makes it possible to demonstrate different levels of sensitivity to digestion by enzymatic cocktails of the tissues in the pith. The precision and strength of the workflow is all the more impressive because it is preserved on cross section images of other grasses such as miscanthus or sorghum. CONCLUSIONS The fidelity of this tool and its capacity to automatically identify variations of a large number of histological profiles among different genotypes pave the way for its use to identify genotypes of interest and to study the underlying genetic bases of variations in histological profiles in maize or other species.
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Affiliation(s)
- P.-L. Lopez-Marnet
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000 Versailles, France
- Ecole Doctorale Numéro 581 : ABIES, AgroParisTech, Université Paris-Saclay, 19 Av du Maine, 75732 Paris Cedex 15, France
| | - S. Guillaume
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000 Versailles, France
| | - V. Méchin
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000 Versailles, France
| | - M. Reymond
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000 Versailles, France
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Khaleghipour L, Linares-Pastén JA, Rashedi H, Ranaei Siadat SO, Jasilionis A, Al-Hamimi S, Sardari RRR, Karlsson EN. Extraction of sugarcane bagasse arabinoxylan, integrated with enzymatic production of xylo-oligosaccharides and separation of cellulose. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:153. [PMID: 34217334 PMCID: PMC8254973 DOI: 10.1186/s13068-021-01993-z] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 06/12/2021] [Indexed: 06/13/2023]
Abstract
Sugarcane processing roughly generates 54 million tonnes sugarcane bagasse (SCB)/year, making SCB an important material for upgrading to value-added molecules. In this study, an integrated scheme was developed for separating xylan, lignin and cellulose, followed by production of xylo-oligosaccharides (XOS) from SCB. Xylan extraction conditions were screened in: (1) single extractions in NaOH (0.25, 0.5, or 1 M), 121 °C (1 bar), 30 and 60 min; (2) 3 × repeated extraction cycles in NaOH (1 or 2 M), 121 °C (1 bar), 30 and 60 min or (3) pressurized liquid extractions (PLE), 100 bar, at low alkalinity (0-0.1 M NaOH) in the time and temperature range 10-30 min and 50-150 °C. Higher concentration of alkali (2 M NaOH) increased the xylan yield and resulted in higher apparent molecular weight of the xylan polymer (212 kDa using 1 and 2 M NaOH, vs 47 kDa using 0.5 M NaOH), but decreased the substituent sugar content. Repeated extraction at 2 M NaOH, 121 °C, 60 min solubilized both xylan (85.6% of the SCB xylan), and lignin (84.1% of the lignin), and left cellulose of high purity (95.8%) in the residuals. Solubilized xylan was separated from lignin by precipitation, and a polymer with β-1,4-linked xylose backbone substituted by arabinose and glucuronic acids was confirmed by FT-IR and monosaccharide analysis. XOS yield in subsequent hydrolysis by endo-xylanases (from glycoside hydrolase family 10 or 11) was dependent on extraction conditions, and was highest using xylan extracted by 0.5 M NaOH, (42.3%, using Xyn10A from Bacillus halodurans), with xylobiose and xylotriose as main products. The present study shows successful separation of SCB xylan, lignin, and cellulose. High concentration of alkali, resulted in xylan with lower degree of substitution (especially reduced arabinosylation), while high pressure (using PLE), released more lignin than xylan. Enzymatic hydrolysis was more efficient using xylan extracted at lower alkaline strength and less efficient using xylan obtained by PLE and 2 M NaOH, which may be a consequence of polymer aggregation, via remaining lignin interactions.
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Affiliation(s)
- Leila Khaleghipour
- Division Biotechnology, Department of Chemistry, Lund University, P. O. Box 124, 22100, Lund, Sweden
- Biotechnology Group, School of Chemical Engineering, College of Engineering, University of Tehran, Tehran, Iran
| | - Javier A Linares-Pastén
- Division Biotechnology, Department of Chemistry, Lund University, P. O. Box 124, 22100, Lund, Sweden
| | - Hamid Rashedi
- Biotechnology Group, School of Chemical Engineering, College of Engineering, University of Tehran, Tehran, Iran.
| | | | - Andrius Jasilionis
- Division Biotechnology, Department of Chemistry, Lund University, P. O. Box 124, 22100, Lund, Sweden
| | - Said Al-Hamimi
- Center for Analysis and Synthesis, Department of Chemistry, Lund University, P. O. Box 124, 22100, Lund, Sweden
| | - Roya R R Sardari
- Division Biotechnology, Department of Chemistry, Lund University, P. O. Box 124, 22100, Lund, Sweden
| | - Eva Nordberg Karlsson
- Division Biotechnology, Department of Chemistry, Lund University, P. O. Box 124, 22100, Lund, Sweden.
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Extraction and characterization of xylan from sugarcane tops as a potential commercial substrate. J Biosci Bioeng 2021; 131:647-654. [PMID: 33676868 DOI: 10.1016/j.jbiosc.2021.01.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 01/26/2021] [Accepted: 01/28/2021] [Indexed: 01/17/2023]
Abstract
Xylan is the major hemicellulose present in sugarcane stem secondary cell walls. Xylan is composed of xylose backbone with a high degree of substitutions, which affects its properties. In the present study, the xylan from sugarcane tops (SCT) was extracted and characterized. Compositional analysis of xylan extracted from SCT (SCTx) displayed the presence of 74% of d-xylose residues, 16% of d-glucuronic acid residues and 10% of l-arabinose. High performance size exclusion chromatographic analysis of SCTx displayed a single peak corresponding to a molecular mass of ∼57 kDa. The Fourier transform infrared spectroscopic analysis of SCTx displayed the peaks corresponding to those obtained from commercial xylan. FESEM analysis of SCTx showed the granular and porous surface structure. Differential thermogravimetric analysis (DTG) of SCTx displayed two thermal degradation temperatures (Td) of 228°C, due to breakdown of the side chains of glucuronic acid and arabinose and 275°C, due to breakdown of xylan back bone. The presence of arabinose and glucuronic acid as a side chains was confirmed by the DTG and thermogravimetric analysis. The CHNS analysis of SCTx showed the presence of only carbon and hydrogen supporting its purity. The recombinant xylanase (CtXyn11A) from Clostridium thermocellum displayed a specific activity of 1394 ± 51 U/mg with SCTx, which was higher than those with commercial xylans. The thin layer chromatography and electrospray ionization mass spectroscopy analyses of CtXyn11A hydrolysed SCTx contained a series of linear xylo-oligosaccharides ranging from degree of polymerization 2-6 and no substituted xylo-oligosaccharides because of the endolytic activity of enzyme. The extracted xylan from SCT can be used as an alternative commercial substrate and for oligo-saccharide production.
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7
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Simões MS, Ferreira SS, Grandis A, Rencoret J, Persson S, Floh EIS, Ferraz A, del Río JC, Buckeridge MS, Cesarino I. Differentiation of Tracheary Elements in Sugarcane Suspension Cells Involves Changes in Secondary Wall Deposition and Extensive Transcriptional Reprogramming. FRONTIERS IN PLANT SCIENCE 2020; 11:617020. [PMID: 33469464 PMCID: PMC7814504 DOI: 10.3389/fpls.2020.617020] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 12/01/2020] [Indexed: 05/06/2023]
Abstract
Plant lignocellulosic biomass, mostly composed of polysaccharide-rich secondary cell walls (SCWs), provides fermentable sugars that may be used to produce biofuels and biomaterials. However, the complex chemical composition and physical structure of SCWs hinder efficient processing of plant biomass. Understanding the molecular mechanisms underlying SCW deposition is, thus, essential to optimize bioenergy feedstocks. Here, we establish a xylogenic culture as a model system to study SCW deposition in sugarcane; the first of its kind in a C4 grass species. We used auxin and brassinolide to differentiate sugarcane suspension cells into tracheary elements, which showed metaxylem-like reticulate or pitted SCW patterning. The differentiation led to increased lignin levels, mainly caused by S-lignin units, and a rise in p-coumarate, leading to increased p-coumarate:ferulate ratios. RNAseq analysis revealed massive transcriptional reprogramming during differentiation, with upregulation of genes associated with cell wall biogenesis and phenylpropanoid metabolism and downregulation of genes related to cell division and primary metabolism. To better understand the differentiation process, we constructed regulatory networks of transcription factors and SCW-related genes based on co-expression analyses. Accordingly, we found multiple regulatory modules that may underpin SCW deposition in sugarcane. Our results provide important insights and resources to identify biotechnological strategies for sugarcane biomass optimization.
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Affiliation(s)
- Marcella Siqueira Simões
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
| | - Sávio Siqueira Ferreira
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
| | - Adriana Grandis
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - Staffan Persson
- School of Biosciences, University of Melbourne, Melbourne, VIC, Australia
- Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark
- Copenhagen Plant Science Center, University of Copenhagen, Frederiksberg, Denmark
- Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Eny Iochevet Segal Floh
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
| | - André Ferraz
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, Brazil
| | - José C. del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Seville, Spain
| | - Marcos Silveira Buckeridge
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
- Synthetic and Systems Biology Center, InovaUSP, São Paulo, Brazil
| | - Igor Cesarino
- Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil
- Synthetic and Systems Biology Center, InovaUSP, São Paulo, Brazil
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Mason PJ, Furtado A, Marquardt A, Hodgson-Kratky K, Hoang NV, Botha FC, Papa G, Mortimer JC, Simmons B, Henry RJ. Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots. BIOTECHNOLOGY FOR BIOFUELS 2020; 13:201. [PMID: 33298135 PMCID: PMC7724889 DOI: 10.1186/s13068-020-01837-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Accepted: 11/21/2020] [Indexed: 06/12/2023]
Abstract
BACKGROUND The composition of biomass determines its suitability for different applications within a biorefinery system. The proportion of the major biomass fractions (sugar, cellulose, hemicellulose and lignin) may vary in different sugarcane genotypes and growth environments and different parts of the plant. This study investigated the composition of mature and immature internodes, roots and mature leaves of sugarcane. RESULTS Internodes were found to have a significantly larger alcohol-soluble component than leaves and roots. The primary difference between the immature and mature internodes was the ratio of soluble sugars. In mature tissues, sucrose content was significantly higher, whereas in immature internodal tissues there was lower sucrose and heightened concentrations of reducing sugars. Carbon (C) partitioning in leaf tissues was characterised by low levels of soluble components and high "other" and cell wall fractions. Root tissue had low ratios of soluble fractions relative to their cell wall contents, indicating a lack of storage of soluble carbon. There was no significant difference in the ratio of the major cell wall fractions between the major organ types. Characterisation of individual non-cellulosic monomers indicated leaf and root tissues had significantly higher arabinose and galactose fractions. Significantly larger proportions of syringyl lignin compounds and the hydroxycinnamic compound, p-coumaric acid were observed in mature internodal tissues compared to the other tissue types. Tissue-specific differences in composition were shown to greatly affect the recalcitrance of the cell wall to enzymatic saccharification. CONCLUSIONS Overall, this study displayed clear evidence of the differential partitioning of C throughout the sugarcane plant in specific organs. These organ-specific differences have major implications in their utility as a bioproduct feedstock. For example, the inclusion of trash (leaves) with the culms (internodes) may alter processing efficiency.
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Affiliation(s)
- Patrick J Mason
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), Level 2, Queensland Biosciences Precinct [#80], The University of Queensland, St Lucia, QLD, 4072, Australia
| | - Agnelo Furtado
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), Level 2, Queensland Biosciences Precinct [#80], The University of Queensland, St Lucia, QLD, 4072, Australia
| | - Annelie Marquardt
- Commonwealth Scientific and Industrial Research Organisation (CSIRO), Level 3, Queensland Biosciences Precinct [#80], The University of Queensland, St Lucia, QLD, 4072, Australia
- Sugar Research Australia Limited (SRA), PO Box 86, Indooroopilly, QLD, 4068, Australia
| | - Katrina Hodgson-Kratky
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), Level 2, Queensland Biosciences Precinct [#80], The University of Queensland, St Lucia, QLD, 4072, Australia
| | - Nam V Hoang
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), Level 2, Queensland Biosciences Precinct [#80], The University of Queensland, St Lucia, QLD, 4072, Australia
- College of Natural Science, Seoul National University, Seoul, 08826, Republic of Korea
| | - Frederik C Botha
- Sugar Research Australia Limited (SRA), PO Box 86, Indooroopilly, QLD, 4068, Australia
| | - Gabriella Papa
- Amyris, 5885 Hollis St, Ste. 100, Emeryville, CA, 94608, USA
- Lawrence Berkeley National Laboratory (LBNL), Joint Bioenergy Institute (JBEI), 5885 Hollis St, Emeryville, CA, 94608, USA
| | - Jenny C Mortimer
- Lawrence Berkeley National Laboratory (LBNL), Joint Bioenergy Institute (JBEI), 5885 Hollis St, Emeryville, CA, 94608, USA
| | - Blake Simmons
- Lawrence Berkeley National Laboratory (LBNL), Joint Bioenergy Institute (JBEI), 5885 Hollis St, Emeryville, CA, 94608, USA
| | - Robert J Henry
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), Level 2, Queensland Biosciences Precinct [#80], The University of Queensland, St Lucia, QLD, 4072, Australia.
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Machado AS, Valadares F, Silva TF, Milagres AMF, Segato F, Ferraz A. The Secretome of Phanerochaete chrysosporium and Trametes versicolor Grown in Microcrystalline Cellulose and Use of the Enzymes for Hydrolysis of Lignocellulosic Materials. Front Bioeng Biotechnol 2020; 8:826. [PMID: 32766234 PMCID: PMC7379840 DOI: 10.3389/fbioe.2020.00826] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Accepted: 06/29/2020] [Indexed: 12/26/2022] Open
Abstract
The ability of white-rot fungi to degrade polysaccharides in lignified plant cell walls makes them a suitable reservoir for CAZyme prospects. However, to date, CAZymes from these species are barely studied, which limits their use in the set of choices for biomass conversion in modern biorefineries. The current work joined secretome studies of two representative white-rot fungi, Phanerochaete chrysosporium and Trametes versicolor, with expression analysis of cellobiohydrolase (CBH) genes, and use of the secretomes to evaluate enzymatic conversion of simple and complex sugarcane-derived substrates. Avicel was used to induce secretion of high levels of CBHs in the extracellular medium. A total of 56 and 58 proteins were identified in cultures of P. chrysosporium and T. versicolor, respectively, with 78-86% of these proteins corresponding to plant cell wall degrading enzymes (cellulolytic, hemicellulolytic, pectinolytic, esterase, and auxiliary activity). CBHI predominated among the plant cell wall degrading enzymes, corresponding to 47 and 34% of the detected proteins in P. chrysosporium and T. versicolor, respectively, which confirms that Avicel is an efficient CBH inducer in white-rot fungi. The induction by Avicel of genes encoding CBHs (cel) was supported by high expression levels of cel7D and cel7C in P. chrysosporium and T. versicolor, respectively. Both white-rot fungi secretomes enabled hydrolysis experiments at 10 FPU/g substrate, despite the varied proportions of CBHs and other enzymes present in each case. When low recalcitrance sugarcane pith was used as a substrate, P. chrysosporium and T. versicolor secretomes performed similarly to Cellic® CTec2. However, the white-rot fungi secretomes were less efficient than Cellic® CTec2 during hydrolysis of more recalcitrant substrates, such as acid or alkaline sulfite-pretreated sugarcane bagasse, likely because Cellic® CTec2 contains an excess of CBHs compared with the white-rot fungi secretomes. General comparison of the white-rot fungi secretomes highlighted T. versicolor enzymes for providing high glucan conversions, even at lower proportion of CBHs, probably because the other enzymes present in this secretome and CBHs lacking carbohydrate-binding modules compensate for problems associated with unproductive binding to lignin.
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Affiliation(s)
| | | | | | | | | | - André Ferraz
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, Brazil
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10
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Low Protein-High Carbohydrate Diets Alter Energy Balance, Gut Microbiota Composition and Blood Metabolomics Profile in Young Pigs. Sci Rep 2020; 10:3318. [PMID: 32094453 PMCID: PMC7040010 DOI: 10.1038/s41598-020-60150-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Accepted: 02/07/2020] [Indexed: 01/04/2023] Open
Abstract
Reducing dietary crude protein (CP) beyond a certain threshold leads to poor growth performance in pigs; however, the underlying mechanisms are not well understood. Following an adaption period, thirty-seven weaned pigs were weight matched (8.41 ± 0.14 kg), housed individually and randomly assigned into three groups with different dietary CP levels: 24% CP (CON; n = 12), 18% CP (n = 12) and 12% CP (n = 13) for 28 days. The body weight was not different between the CON and 18% CP diets, but 12% CP significantly decreased body weight after day 21. Compared to the CON, pigs fed with 12% CP decreased feed intake day 17 onwards. The 12% CP diet increased the energy expenditure during week 1 compared to the CON. The 12% CP influenced starch and sucrose, nitrogen, and branched-chain amino acids metabolism pathways. The feces of pigs fed with 12% CP were less enriched in Prevotella, but had higher relative abundance of Christensenedilaceae, Aligiphilus and Algoriphagus than CON and 18% CP. Overall, reducing dietary CP by 50%, but not by 25%, significantly influenced the physiological responses in nursery pigs. The pigs fed with low or standard protein diets had differential bacterial communities in their feces as well as serum metabolomics profile.
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11
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Galbe M, Wallberg O. Pretreatment for biorefineries: a review of common methods for efficient utilisation of lignocellulosic materials. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:294. [PMID: 31890022 PMCID: PMC6927169 DOI: 10.1186/s13068-019-1634-1] [Citation(s) in RCA: 127] [Impact Index Per Article: 25.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 12/11/2019] [Indexed: 05/02/2023]
Abstract
The implementation of biorefineries based on lignocellulosic materials as an alternative to fossil-based refineries calls for efficient methods for fractionation and recovery of the products. The focus for the biorefinery concept for utilisation of biomass has shifted, from design of more or less energy-driven biorefineries, to much more versatile facilities where chemicals and energy carriers can be produced. The sugar-based biorefinery platform requires pretreatment of lignocellulosic materials, which can be very recalcitrant, to improve further processing through enzymatic hydrolysis, and for other downstream unit operations. This review summarises the development in the field of pretreatment (and to some extent, of fractionation) of various lignocellulosic materials. The number of publications indicates that biomass pretreatment plays a very important role for the biorefinery concept to be realised in full scale. The traditional pretreatment methods, for example, steam pretreatment (explosion), organosolv and hydrothermal treatment are covered in the review. In addition, the rapidly increasing interest for chemical treatment employing ionic liquids and deep-eutectic solvents are discussed and reviewed. It can be concluded that the huge variation of lignocellulosic materials makes it difficult to find a general process design for a biorefinery. Therefore, it is difficult to define "the best pretreatment" method. In the end, this depends on the proposed application, and any recommendation of a suitable pretreatment method must be based on a thorough techno-economic evaluation.
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Affiliation(s)
- Mats Galbe
- Department of Chemical Engineering, Lund University, P.O. Box 124, 221 00 Lund, Sweden
| | - Ola Wallberg
- Department of Chemical Engineering, Lund University, P.O. Box 124, 221 00 Lund, Sweden
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Rautengarten C, Heazlewood JL, Ebert B. Profiling Cell Wall Monosaccharides and Nucleotide-Sugars from Plants. ACTA ACUST UNITED AC 2019; 4:e20092. [PMID: 31187943 DOI: 10.1002/cppb.20092] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The cell wall is an intricate mesh largely composed of polysaccharides that vary in structure and abundance. Apart from cellulose biosynthesis, the assembly of matrix polysaccharides such as pectin and hemicellulose occur in the Golgi apparatus before being transported via vesicles to the cell wall. Matrix polysaccharides are biosynthesized from activated precursors or nucleotide sugars. The composition and assembly of the cell wall is an important aspect in plant development and plant biomass utilization. The application of anion-exchange chromatography to determine the monosaccharide composition of the insoluble matrix polysaccharides enables a complete profile of all major sugars in the cell wall from a single run. While porous carbon graphite chromatography and tandem mass spectrometry delivers a sensitive and robust nucleotide sugar profile from plant extracts. Here we describe detailed methodology to quantify nucleotide sugars within the cell and profile the non-cellulosic monosaccharide composition of the cell wall. © 2019 by John Wiley & Sons, Inc.
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Affiliation(s)
- Carsten Rautengarten
- School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia
| | - Joshua L Heazlewood
- School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia
| | - Berit Ebert
- School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia
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Antunes FAF, Chandel AK, Terán-Hilares R, Ingle AP, Rai M, Dos Santos Milessi TS, da Silva SS, Dos Santos JC. Overcoming challenges in lignocellulosic biomass pretreatment for second-generation (2G) sugar production: emerging role of nano, biotechnological and promising approaches. 3 Biotech 2019; 9:230. [PMID: 31139545 DOI: 10.1007/s13205-019-1761-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 05/13/2019] [Indexed: 01/12/2023] Open
Abstract
Production of green chemicals and biofuels in biorefineries is the potential alternative for petrochemicals and gasoline in transitioning of petro-economy into bioeconomy. However, an efficient biomass pretreatment process must be considered for the successful deployment of biorefineries, mainly for use of lignocellulosic raw materials. However, biomass recalcitrance plays a key role in its saccharification to obtain considerable sugar which can be converted into ethanol or other biochemicals. In the last few decades, several pretreatment methods have been developed, but their feasibility at large-scale operations remains as a persistent bottleneck in biorefineries. Pretreatment methods such as hydrodynamic cavitation, ionic liquids, and supercritical fluids have shown promising results in terms of either lignin or hemicellulose removal, thus making remaining carbohydrate fraction amenable to the enzymatic hydrolysis for clean and high amount of fermentable sugar production. However, their techno-economic feasibility at industrial scale has not been yet studied in detail. Besides, nanotechnological-based technologies could play an important role in the economically viable 2G sugar production in future. Considering these facts, in the present review, we have discussed the existing promising pretreatment methods for lignocellulosic biomass and their challenges, besides this strategic role of nano and biotechnological approaches towards the viability and sustainability of biorefineries is also discussed.
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Affiliation(s)
- Felipe Antonio Fernandes Antunes
- 1Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, s/n-Campinho, Lorena, 12602-810 Brazil
| | - Anuj Kumar Chandel
- 1Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, s/n-Campinho, Lorena, 12602-810 Brazil
| | - Ruly Terán-Hilares
- 1Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, s/n-Campinho, Lorena, 12602-810 Brazil
| | - Avinash P Ingle
- 3Nanotechnology Laboratory, Department of Biotechnology, SGB Amravati University, Amravati, 444 602 India
| | - Mahendra Rai
- 3Nanotechnology Laboratory, Department of Biotechnology, SGB Amravati University, Amravati, 444 602 India
| | | | - Silvio Silvério da Silva
- 1Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, s/n-Campinho, Lorena, 12602-810 Brazil
| | - Júlio César Dos Santos
- 1Department of Biotechnology, Engineering School of Lorena, University of São Paulo, Estrada Municipal do Campinho, s/n-Campinho, Lorena, 12602-810 Brazil
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Figueiredo R, Araújo P, Llerena JPP, Mazzafera P. Suberin and hemicellulose in sugarcane cell wall architecture and crop digestibility: A biotechnological perspective. Food Energy Secur 2019. [DOI: 10.1002/fes3.163] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Affiliation(s)
- Raquel Figueiredo
- Department of Plant Biology Institute of Biology State University of Campinas Campinas Brazil
| | - Pedro Araújo
- Department of Genetics, Evolution and Bioagents Institute of Biology State University of Campinas Campinas Brazil
| | - Juan Pablo P. Llerena
- Department of Plant Biology Institute of Biology State University of Campinas Campinas Brazil
| | - Paulo Mazzafera
- Department of Plant Biology Institute of Biology State University of Campinas Campinas Brazil
- Department of Crop Science College of Agriculture Luiz de Queiroz University of São Paulo Piracicaba Brazil
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Hodgson-Kratky K, Papa G, Rodriguez A, Stavila V, Simmons B, Botha F, Furtado A, Henry R. Relationship between sugarcane culm and leaf biomass composition and saccharification efficiency. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:247. [PMID: 31636706 PMCID: PMC6796448 DOI: 10.1186/s13068-019-1588-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 10/05/2019] [Indexed: 05/06/2023]
Abstract
BACKGROUND Lignocellulosic biomass is recognized as a promising renewable feedstock for the production of biofuels. However, current methods for converting biomass into fermentable sugars are considered too expensive and inefficient due to the recalcitrance of the secondary cell wall. Biomass composition can be modified to create varieties that are efficiently broken down to release cell wall sugars. This study focused on identifying the key biomass components influencing plant cell wall recalcitrance that can be targeted for selection in sugarcane, an important and abundant source of biomass. RESULTS Biomass composition and the amount of glucan converted into glucose after saccharification were measured in leaf and culm tissues from seven sugarcane genotypes varying in fiber composition after no pretreatment and dilute acid, hydrothermal and ionic liquid pretreatments. In extractives-free sugarcane leaf and culm tissue, glucan, xylan, acid-insoluble lignin (AIL) and acid-soluble lignin (ASL) ranged from 20 to 32%, 15% to 21%, 14% to 20% and 2% to 4%, respectively. The ratio of syringyl (S) to guaiacyl (G) content in the lignin ranged from 1.5 to 2.2 in the culm and from 0.65 to 1.1 in the leaf. Hydrothermal and dilute acid pretreatments predominantly reduced xylan content, while the ionic liquid (IL) pretreatment targeted AIL reduction. The amount of glucan converted into glucose after 26 h of pre-saccharification was highest after IL pretreatment (42% in culm and 63.5% in leaf) compared to the other pretreatments. Additionally, glucan conversion in leaf tissues was approximately 1.5-fold of that in culm tissues. Percent glucan conversion varied between genotypes but there was no genotype that was superior to all others across the pretreatment groups. Path analysis revealed that S/G ratio, AIL and xylan had the strongest negative associations with percent glucan conversion, while ASL and glucan content had strong positive influences. CONCLUSION To improve saccharification efficiency of lignocellulosic biomass, breeders should focus on reducing S/G ratio, xylan and AIL content and increasing ASL and glucan content. This will be key for the development of sugarcane varieties for bioenergy uses.
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Affiliation(s)
- K. Hodgson-Kratky
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072 Australia
| | - G. Papa
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Advanced Biofuels and Bioproducts Process Development Unit, Emeryville, CA 94608 USA
| | - A. Rodriguez
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
- Sandia National Laboratories, Livermore, CA 94550 USA
| | - V. Stavila
- Sandia National Laboratories, Livermore, CA 94550 USA
| | - B. Simmons
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072 Australia
- Joint BioEnergy Institute, Emeryville, CA 94608 USA
| | - F. Botha
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072 Australia
- Sugar Research Australia, Brisbane, QLD 4068 Australia
| | - A. Furtado
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072 Australia
| | - R. Henry
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD 4072 Australia
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Functional characterization of GH7 endo-1,4-β-glucanase from Aspergillus fumigatus and its potential industrial application. Protein Expr Purif 2018; 150:1-11. [DOI: 10.1016/j.pep.2018.04.016] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2018] [Revised: 04/24/2018] [Accepted: 04/24/2018] [Indexed: 11/23/2022]
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Tsegaye B, Balomajumder C, Roy P. Biodelignification and hydrolysis of rice straw by novel bacteria isolated from wood feeding termite. 3 Biotech 2018; 8:447. [PMID: 30333949 PMCID: PMC6181904 DOI: 10.1007/s13205-018-1471-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Accepted: 10/04/2018] [Indexed: 01/26/2023] Open
Abstract
In this study, two bacterial strains capable of degrading lignin, cellulose, and hemicellulose were isolated from wood feeding termite. The isolates were identified by 16S rRNA gene sequencing. A bacterium Ochrobactrum oryzae BMP03 capable of degrading lignin was isolated on alkali lignin medium and Bacillus sp. BMP01 strain capable of degrading cellulose and hemicellulose were isolated on carboxymethyl cellulose and xylan media. The efficiency of bacterial degradation was studied by evaluating the composition of rice straw both before and after degradation. The appearance of new cellulose bands at 1382, 1276, 1200, and 871 cm-1, and the absence of former lignin bands at 1726, 1307, and 1246 cm-1 was observed after biodelignification. This was further confirmed by the formation of channeling and layering of the microstructure of biodelignified rice straw observed under electron microscope. Maximum lignin removal was achieved in separate biodelignification and hydrolysis process after the 14th day of treatment by Ochrobactrum oryzae BMP03 (53.74% lignin removal). Hydrolysis of the biodelignified rice straw released 69.96% of total reducing sugars after the 14th day hydrolysis by Bacillus sp. BMP01. In simultaneous delignification and hydrolysis process, about 58.67% of total reducing sugars were obtained after the 13th day of biotreatment. Separate delignification and hydrolysis process were found to be effective in lignin removal and sugar released than the simultaneous process. The bacteria, Bacillus sp. BMP01, has the ability to degrade hemicellulose and cellulose simultaneously. Overall, these results demonstrate that the possibility of rice straw bioconversion into reducing sugars by bacteria from termite gut.
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Affiliation(s)
- Bahiru Tsegaye
- Department of Chemical Engineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand 247667 India
| | - Chandrajit Balomajumder
- Department of Chemical Engineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand 247667 India
| | - Partha Roy
- Department of Biotechnology, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand 247667 India
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Monte JR, Laurito-Friend DF, Mussatto SI, Ferraz A, Milagres AMF. Comparative evaluation of acid and alkaline sulfite pretreatments for enzymatic saccharification of bagasses from three different sugarcane hybrids. Biotechnol Prog 2018; 34:944-951. [DOI: 10.1002/btpr.2647] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Revised: 01/08/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Joseana R. Monte
- Dept. de Biotecnologia; Escola de Engenharia de Lorena, Universidade de São Paulo; Lorena SP 12602-810 Brasil
| | - Debora F. Laurito-Friend
- Dept. de Biotecnologia; Escola de Engenharia de Lorena, Universidade de São Paulo; Lorena SP 12602-810 Brasil
| | - Solange I. Mussatto
- Novo Nordisk Foundation Center for Biosustainability; Technical University of Denmark; Kongens Lyngby 2800 Denmark
| | - André Ferraz
- Dept. de Biotecnologia; Escola de Engenharia de Lorena, Universidade de São Paulo; Lorena SP 12602-810 Brasil
| | - Adriane M. F. Milagres
- Dept. de Biotecnologia; Escola de Engenharia de Lorena, Universidade de São Paulo; Lorena SP 12602-810 Brasil
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Marques JPR, Hoy JW, Appezzato-da-Glória B, Viveros AFG, Vieira MLC, Baisakh N. Sugarcane Cell Wall-Associated Defense Responses to Infection by Sporisorium scitamineum. FRONTIERS IN PLANT SCIENCE 2018; 9:698. [PMID: 29875793 PMCID: PMC5974332 DOI: 10.3389/fpls.2018.00698] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Accepted: 05/07/2018] [Indexed: 05/08/2023]
Abstract
The plant cell wall is known to be the first barrier against plant pathogens. Detailed information about sugarcane cell wall-associated defense responses to infection by the causal agent of smut, Sporisorium scitamineum, is scarce. Herein, (immuno)histochemical analysis of two smut resistant and two susceptible sugarcane cultivars was conducted to understand host cell wall structural and compositional modifications in response to fungal infection. Results showed that the fungus grew on the surface and infected the outermost bud scale of both susceptible and resistant cultivars. The present findings also supported the existence of early (24 h after inoculation) and later (72-96 h after inoculation) inducible histopathological responses related to the cell wall modification in resistant cultivars. Lignin and phenolic compounds accumulated during early stages of infection. Later infection response was characterized by the formation of a protective barrier layer with lignin, cellulose and arabinoxylan in the cell walls. Overall, the results suggest possible induction of cell wall-modified responses in smut resistant cultivars to prevent initial entry of the fungus into the meristematic tissues.
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Affiliation(s)
- João P. R. Marques
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
- Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Jeffrey W. Hoy
- Department of Plant Pathology and Crop Physiology, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
| | - Beatriz Appezzato-da-Glória
- Biological Science Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Andrés F. G. Viveros
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
| | - Maria L. C. Vieira
- Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Niranjan Baisakh
- School of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, United States
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Sporck D, Reinoso FAM, Rencoret J, Gutiérrez A, del Rio JC, Ferraz A, Milagres AMF. Xylan extraction from pretreated sugarcane bagasse using alkaline and enzymatic approaches. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:296. [PMID: 29234463 PMCID: PMC5719793 DOI: 10.1186/s13068-017-0981-z] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Accepted: 11/26/2017] [Indexed: 05/10/2023]
Abstract
BACKGROUND New biorefinery concepts are necessary to drive industrial use of lignocellulose biomass components. Xylan recovery before enzymatic hydrolysis of the glucan component is a way to add value to the hemicellulose fraction, which can be used in papermaking, pharmaceutical, and food industries. Hemicellulose removal can also facilitate subsequent cellulolytic glucan hydrolysis. RESULTS Sugarcane bagasse was pretreated with an alkaline-sulfite chemithermomechanical process to facilitate subsequent extraction of xylan by enzymatic or alkaline procedures. Alkaline extraction methods yielded 53% (w/w) xylan recovery. The enzymatic approach provided a limited yield of 22% (w/w) but produced the xylan with the lowest contamination with lignin and glucan components. All extracted xylans presented arabinosyl side groups and absence of acetylation. 2D-NMR data suggested the presence of O-methyl-glucuronic acid and p-coumarates only in enzymatically extracted xylan. Xylans isolated using the enzymatic approach resulted in products with molecular weights (Mw) lower than 6 kDa. Higher Mw values were detected in the alkali-isolated xylans. Alkaline extraction of xylan provided a glucan-enriched solid readily hydrolysable with low cellulase loads, generating hydrolysates with a high glucose/xylose ratio. CONCLUSIONS Hemicellulose removal before enzymatic hydrolysis of the cellulosic fraction proved to be an efficient manner to add value to sugarcane bagasse biorefining. Xylans with varied yield, purity, and structure can be obtained according to the extraction method. Enzymatic extraction procedures produce high-purity xylans at low yield, whereas alkaline extraction methods provided higher xylan yields with more lignin and glucan contamination. When xylan extraction is performed with alkaline methods, the residual glucan-enriched solid seems suitable for glucose production employing low cellulase loadings.
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Affiliation(s)
- Daniele Sporck
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Felipe A. M. Reinoso
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Av. Reina Mercedes, 10, 41012 Seville, Spain
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Av. Reina Mercedes, 10, 41012 Seville, Spain
| | - José C. del Rio
- Instituto de Recursos Naturales y Agrobiología de Sevilla, CSIC, Av. Reina Mercedes, 10, 41012 Seville, Spain
| | - André Ferraz
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Adriane M. F. Milagres
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
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Machado ADS, Ferraz A. Biological pretreatment of sugarcane bagasse with basidiomycetes producing varied patterns of biodegradation. BIORESOURCE TECHNOLOGY 2017; 225:17-22. [PMID: 27875764 DOI: 10.1016/j.biortech.2016.11.053] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Revised: 11/11/2016] [Accepted: 11/12/2016] [Indexed: 05/06/2023]
Abstract
This work evaluated sugarcane bagasse pretreatment with wood-decay fungi, producing varied patterns of biodegradation. The overall mass balance of sugars released after pretreatment and enzymatic hydrolysis indicated that a selective white-rot was necessary to provide glucose yields similar to the ones observed from leading physico-chemical pretreatment technologies. The selective white-rot Ceriporiopsis subvermispora was selective for lignin degradation in the lignocellulosic material, preserved most of the glucan fraction, and increased the cellulose digestibility of biotreated material. Glucose mass balances indicated that of the potential glucose of untreated bagasse, 47% was recovered as sugar-rich syrup after C. subvermispora biotreatment for 60days followed by enzymatic digestion of the pretreated material.
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Affiliation(s)
- Angela da Silva Machado
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, 12610-820 Lorena, SP, Brazil
| | - André Ferraz
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, 12610-820 Lorena, SP, Brazil.
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Crowe JD, Feringa N, Pattathil S, Merritt B, Foster C, Dines D, Ong RG, Hodge DB. Identification of developmental stage and anatomical fraction contributions to cell wall recalcitrance in switchgrass. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:184. [PMID: 28725264 PMCID: PMC5512841 DOI: 10.1186/s13068-017-0870-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Accepted: 07/06/2017] [Indexed: 05/08/2023]
Abstract
BACKGROUND Heterogeneity within herbaceous biomass can present important challenges for processing feedstocks to cellulosic biofuels. Alterations to cell wall composition and organization during plant growth represent major contributions to heterogeneity within a single species or cultivar. To address this challenge, the focus of this study was to characterize the relationship between composition and properties of the plant cell wall and cell wall response to deconstruction by NaOH pretreatment and enzymatic hydrolysis for anatomical fractions (stem internodes, leaf sheaths, and leaf blades) within switchgrass at various tissue maturities as assessed by differing internode. RESULTS Substantial differences in both cell wall composition and response to deconstruction were observed as a function of anatomical fraction and tissue maturity. Notably, lignin content increased with tissue maturity concurrently with decreasing ferulate content across all three anatomical fractions. Stem internodes exhibited the highest lignin content as well as the lowest hydrolysis yields, which were inversely correlated to lignin content. Confocal microscopy was used to demonstrate that removal of cell wall aromatics (i.e., lignins and hydroxycinnamates) by NaOH pretreatment was non-uniform across diverse cell types. Non-cellulosic polysaccharides were linked to differences in cell wall response to deconstruction in lower lignin fractions. Specifically, leaf sheath and leaf blade were found to have higher contents of substituted glucuronoarabinoxylans and pectic polysaccharides. Glycome profiling demonstrated that xylan and pectic polysaccharide extractability varied with stem internode maturity, with more mature internodes requiring harsher chemical extractions to remove comparable glycan abundances relative to less mature internodes. While enzymatic hydrolysis was performed on extractives-free biomass, extractible sugars (i.e., starch and sucrose) comprised a significant portion of total dry weight particularly in stem internodes, and may provide an opportunity for recovery during processing. CONCLUSIONS Cell wall structural differences within a single plant can play a significant role in feedstock properties and have the potential to be exploited for improving biomass processability during a biorefining process. The results from this work demonstrate that cell wall lignin content, while generally exhibiting a negative correlation with enzymatic hydrolysis yields, is not the sole contributor to cell wall recalcitrance across diverse anatomical fractions within switchgrass.
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Affiliation(s)
- Jacob D. Crowe
- Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI USA
| | - Nicholas Feringa
- Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI USA
| | - Sivakumar Pattathil
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA USA
- Bioenergy Science Center, Oak Ridge National Laboratory, Oak Ridge, TN USA
| | - Brian Merritt
- Complex Carbohydrate Research Center, University of Georgia, Athens, GA USA
| | - Cliff Foster
- DOE-Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI USA
| | - Dayna Dines
- DOE-Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI USA
| | - Rebecca G. Ong
- Department of Chemical Engineering, Michigan Technological University, Houghton, MI USA
| | - David B. Hodge
- Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI USA
- DOE-Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI USA
- Department of Biosystems & Agricultural Engineering, Michigan State University, East Lansing, MI USA
- Department of Civil, Environmental and Natural Resources Engineering, Luleå University of Technology, Luleå, Sweden
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