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Urbelienė N, Gasparavičiūtė R, Vaitekūnas J, Meškienė R, Valantinaitė U, Kruopis P, Gudiukaitė R, Meškys R. A screening method for polyester films-degrading microorganisms and enzymes. JOURNAL OF HAZARDOUS MATERIALS 2025; 487:137177. [PMID: 39813930 DOI: 10.1016/j.jhazmat.2025.137177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Revised: 01/06/2025] [Accepted: 01/09/2025] [Indexed: 01/18/2025]
Abstract
Enzymatic degradation of plastic pollution offers a promising environmentally friendly waste management strategy, however, suitable biocatalysts must be screened and developed. Traditional screening methods using soluble or solubilised polymers do not necessarily identify enzymes that are effective against solid or crystalline polymers. This study presents a simple, time-saving and cost-effective method for identifying microorganisms and enzymes capable of degrading polymeric films. The method was tested on polycaprolactone (PCL), polyethylene terephthalate (PET), polylactate (PLA) and polyhydroxybutyrate/polyhydroxyvalerate (PHB/PHV) films. It involves two steps: first, screening for PCL diol (PCLD)-degrading microorganisms on agar plates, and second, testing these microorganisms on polyester films. Using this screening method, over 100 PCLD-degrading microorganisms and 27 E. coli clones carrying genomic or metagenomic DNA fragments have been isolated. In addition, recombinant cutinases from Streptomyces scabiei and Thermobifida fusca have been tested. Approximately 66 % of the microorganisms forming halos on PCLD agar plates hydrolysed PCL and 6 % - the biaxially oriented PET film. In addition, five PLA- and four PHB/PHV-degrading esterases have been identified. The proposed method is effective for detecting both wild-type and recombinant microorganisms, as well as recombinant enzymes from in vitro transcription-translation reactions. Screening for thermostable and thermophilic enzymes, including those resistant to organic solvents or environmental inhibitors, is also easily implemented.
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Affiliation(s)
- Nina Urbelienė
- Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania.
| | - Renata Gasparavičiūtė
- Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania
| | - Justas Vaitekūnas
- Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania
| | - Rita Meškienė
- Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania
| | - Urtė Valantinaitė
- Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania
| | - Povilas Kruopis
- Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania
| | - Renata Gudiukaitė
- Department of Microbiology and Biotechnology, Institute of Biosciences, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania
| | - Rolandas Meškys
- Department of Molecular Microbiology and Biotechnology, Institute of Biochemistry, Life Sciences Center, Vilnius University, Saulėtekio Av. 7, Vilnius 10257, Lithuania
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Zhang M, Chen Y, Chung A, Yang S, Choi CH, Zhang S, Han Y, Xiao H. Harnessing Nature-Inspired Catechol Amino Acid to Engineer Sticky Proteins and Bacteria. SMALL METHODS 2024; 8:e2400230. [PMID: 39285836 DOI: 10.1002/smtd.202400230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Revised: 09/06/2024] [Indexed: 10/22/2024]
Abstract
3,4-Dihydroxy-L-phenylalanine (DOPA) serves as a post-translational modification amino acid present in mussel foot proteins. Mussels exploit the exceptional adhesive properties of DOPA to adhere to a wide range of surfaces. This study presents the development of sticky proteins and bacteria through the site-specific incorporation of DOPA using Genetic Code Expansion Technology. Through the optimization of the DOPA incorporation system, proteins containing DOPA demonstrate significantly improved binding abilities to various organic and metallic materials. The material-binding capabilities of DOPA to combat different types of biofoulings are harnessed by integrating it into intrinsically disordered proteins. Beyond the creation of adhesive proteins for anti-biofouling purposes, this highly efficient DOPA incorporation system is also applied to engineer adhesive bacteria, resulting in a remarkable increase in their binding capability to diverse materials including 400 folds of improvement to polyethylene terephthalate (PET). This substantial enhancement in PET binding of these bacteria has allowed to develop a unique approach for PET degradation, showcasing the innovative application of Genetic Code Expansion in cell engineering.
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Affiliation(s)
- Mengxi Zhang
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA
| | - Yuda Chen
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA
| | - Anna Chung
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA
| | - Shudan Yang
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA
| | - Chi Hun Choi
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA
| | - Sophie Zhang
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA
- The Awty International Schoo, 6100 Main Street, Houston, TX, 77055, USA
| | - Yimo Han
- Department of Materials Science and NanoEngineering, Rice University, 6100 Main St., Houston, TX, 77005, USA
| | - Han Xiao
- Department of Chemistry, Rice University, 6100 Main Street, Houston, TX, 77005, USA
- Department of Biosciences, Rice University, 6100 Main Street, Houston, TX, 77005, USA
- Department of Bioengineering, Rice University, 6100 Main Street, Houston, TX, 77005, USA
- SynthX Center, Rice University, 6100 Main Street, Houston, TX, 77005, USA
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Kumar M, Chaudhary V, Chaudhary V, Srivastav AL, Madhav S. Impacts of microplastics on ecosystem services and their microbial degradation: a systematic review of the recent state of the art and future prospects. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:63524-63575. [PMID: 39508948 DOI: 10.1007/s11356-024-35472-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Accepted: 10/26/2024] [Indexed: 11/15/2024]
Abstract
Microplastics are tiny plastic particles with a usual diameter ranging from ~ 1 μ to 5 µm. Recently, microplastic pollution has raised the attention of the worldwide environmental and human concerns. In human beings, digestive system illness, respiratory system disorders, sleep disturbances, obesity, diabetes, and even cancer have been reported after microplastic exposure either through food, air, or skin. Similarly, microplastics are also having negative impacts on the plant health, soil microorganisms, aquatic lives, and other animals. Policies and initiatives have already been in the pipeline to address this problem to deal with microplastic pollution. However, many obstacles are also being observed such as lack of knowledge, lack of research, and also absence of regulatory frameworks. This article has covered the distribution of microplastics in water, soil, food and air. Application of multimodel strategies including fewer plastic item consumption, developing low-cost novel technologies using microorganisms, biofilm, and genetic modified microorganisms has been used to reduce microplastics from the environment. Researchers, academician, policy-makers, and environmentalists should work jointly to cope up with microplastic contamination and their effect on the ecosystem as a whole which can be reduced in the coming years and also to make earth clean.
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Affiliation(s)
- Mukesh Kumar
- College of Horticulture, Sardar Vallabhbhai Patel University of Agriculture and Technology, Meerut, Uttar Pradesh, India
| | - Veena Chaudhary
- Department of Chemistry, Meerut College Meerut, Meerut, Uttar Pradesh, India
| | - Vidisha Chaudhary
- Institute of Business Studies, CCS University, Meerut, India, Uttar Pradesh
| | - Arun Lal Srivastav
- Chitkara University School of Engineering and Technology, Chitkara University, Solan, Himachal Pradesh, India.
- Center of Excellence for Sustainability, Chitkara University, Solan, Himachal Pradesh, India.
| | - Sughosh Madhav
- Department of Civil Engineering, Jamia Millia Islamia, New Delhi, India
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Albaseer SS, Al-Hazmi HE, Kurniawan TA, Xu X, Abdulrahman SAM, Ezzati P, Habibzadeh S, Hollert H, Rabiee N, Lima EC, Badawi M, Saeb MR. Microplastics in water resources: Global pollution circle, possible technological solutions, legislations, and future horizon. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:173963. [PMID: 38901599 DOI: 10.1016/j.scitotenv.2024.173963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Revised: 06/09/2024] [Accepted: 06/11/2024] [Indexed: 06/22/2024]
Abstract
Beneath the surface of our ecosystems, microplastics (MPs) silently loom as a significant threat. These minuscule pollutants, invisible to the naked eye, wreak havoc on living organisms and disrupt the delicate balance of our environment. As we delve into a trove of data and reports, a troubling narrative unfolds: MPs pose a grave risk to both health and food chains with their diverse compositions and chemical characteristics. Nevertheless, the peril extends further. MPs infiltrate the environment and intertwine with other pollutants. Worldwide, microplastic levels fluctuate dramatically, ranging from 0.001 to 140 particles.m-3 in water and 0.2 to 8766 particles.g-1 in sediment, painting a stark picture of pervasive pollution. Coastal and marine ecosystems bear the brunt, with each organism laden with thousands of microplastic particles. MPs possess a remarkable ability to absorb a plethora of contaminants, and their environmental behavior is influenced by factors such as molecular weight and pH. Reported adsorption capacities of MPs vary greatly, spanning from 0.001 to 12,700 μg·g-1. These distressing figures serve as a clarion call, demanding immediate action and heightened environmental consciousness. Legislation, innovation, and sustainable practices stand as indispensable defenses against this encroaching menace. Grasping the intricate interplay between microplastics and pollutants is paramount, guiding us toward effective mitigation strategies and preserving our health ecosystems.
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Affiliation(s)
- Saeed S Albaseer
- Institute of Ecology, Evolution and Diversity, Department Evolutionary Ecology and Environmental Toxicology, Goethe University Frankfurt, Max-von-Laue-Straße 13, 60438 Frankfurt am Main, Germany
| | - Hussein E Al-Hazmi
- Department of Sanitary Engineering, Faculty of Civil and Environmental Engineering, Gdańsk University of Technology, Gdańsk, Poland.
| | | | - Xianbao Xu
- Department of Sanitary Engineering, Faculty of Civil and Environmental Engineering, Gdańsk University of Technology, Gdańsk, Poland
| | - Sameer A M Abdulrahman
- Department of Chemistry, Faculty of Education and Sciences-Rada'a, Albaydha University, Albaydha, Yemen
| | - Peyman Ezzati
- ERA Co., Ltd, Science and Technology Center, P.O. Box: 318020, Taizhou, Zhejiang, China
| | - Sajjad Habibzadeh
- Department of Chemical Engineering, Amirkabir University of Technology (Tehran Polytechnic), Tehran, Iran
| | - Henner Hollert
- Institute of Ecology, Evolution and Diversity, Department Evolutionary Ecology and Environmental Toxicology, Goethe University Frankfurt, Max-von-Laue-Straße 13, 60438 Frankfurt am Main, Germany
| | - Navid Rabiee
- Department of Biomaterials, Saveetha Dental College and Hospitals, SIMATS, Saveetha University, Chennai 600077, India
| | - Eder C Lima
- Institute of Chemistry - Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil.
| | - Michael Badawi
- Université de Lorraine, CNRS, Laboratoire Lorrain de Chimie Moléculaire, F-57000 Metz, France
| | - Mohammad Reza Saeb
- Department of Pharmaceutical Chemistry, Medical University of Gdańsk, J. Hallera 107, 80-416 Gdańsk, Poland.
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Giroux L, Isayenka I, Lerat S, Beaudoin N, Beaulieu C. Proteomics fingerprinting reveals importance of iron and oxidative stress in Streptomyces scabies- Solanum tuberosum interactions. Front Microbiol 2024; 15:1466927. [PMID: 39417082 PMCID: PMC11479980 DOI: 10.3389/fmicb.2024.1466927] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Accepted: 09/23/2024] [Indexed: 10/19/2024] Open
Abstract
Introduction The Gram-positive actinobacterium Streptomyces scabies is the major causal agent of potato common scab. The main pathogenicity factor is thaxtomin A, a phytotoxin that causes atypical cell death, although other secondary metabolites have been described to play a role in S. scabies virulence. Despite this, many aspects of the interaction between S. scabies and its primary host Solanum tuberosum L. remain to be elucidated. Methods Intracellular proteins of S. scabies EF-35 grown in the presence of in vitro produced tubers (microtubers) of the Russet Burbank and Yukon Gold potato cultivars were extracted and analysed by electrospray mass spectrometry (ES MS/MS). Based on the results of proteomic analysis, iron quantification by ICP-MS and nitrite quantification using Griess reagent in growth media as well as RT-qPCR analysis of the siderophore pyochelin gene expression were performed in the presence and absence of microtubers. Hydrogen peroxide accumulation was also determined in the nutrient medium used for co-cultivation of bacteria and potato microtubers. Results Potato microtubers caused an increase in the content of bacterial proteins involved in stress and defense, secondary metabolism, and cell differentiation, as well as secreted proteins. Co-cultivation with potato microtubers induced the accumulation of S. scabies proteins implicated in siderophore pyochelin biosynthesis, nitrite production and oxidative stress perception and response. The increase in the abundance of proteins related to pyochelin biosynthesis was consistent with a significant decrease in the iron content in the culture medium, as well as with induction of expression of pyochelin biosynthesis genes. Elevated nitrite/sulfite reductase protein levels were associated with increased nitrite excretion by S. scabies cells in the presence of host microtubers. The increase in the levels of proteins associated with signaling and oxidative stress response could have been caused by the accumulation of ROS, in particular hydrogen peroxide, detected in the studied system. Discussion These findings show that interactions of S. scabies with living potato microtubers induce the production of secondary metabolites, defense responses, and protection from oxidative stress. This study suggests the importance of iron during host - S. scabies interactions, resulting in competition between pathogen and its host.
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Affiliation(s)
| | | | | | | | - Carole Beaulieu
- Département de Biologie, Centre SÈVE, Université de Sherbrooke, Sherbrooke, QC, Canada
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Xing R, Zhai K, Du X, Chen X, Chen Z, Zhou S. Hybrid mechanism of microplastics degradation via biological and chemical process during composting. BIORESOURCE TECHNOLOGY 2024; 408:131167. [PMID: 39067708 DOI: 10.1016/j.biortech.2024.131167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Revised: 07/18/2024] [Accepted: 07/25/2024] [Indexed: 07/30/2024]
Abstract
Little is known about the synergistic effects of abiotic aging and biodegradation on microplastics (MPs) transformation in the environment. Herein, a hybrid process of MPs degradation was proposed by analyzing the effect of microorganisms and abiotic aging on aging MPs and non-aging MPs degradation during composting. The results showed that composting facilitated the oxidation and depolymerization of aging MPs, and its degradation efficiency was about three times that of non-aging MPs. Further investigation revealed that aging MPs contained higher abundance of plastic-degrading bacteria and enzyme activity than non-aging MPs. In addition, free radicals also influenced the degradation of MPs. However, path model and shielding experiments confirmed that free radicals mainly facilitated the non-aging MPs degradation (contribution was 68.8 %), while aging MPs was easily degraded by microorganisms (contribution was 72.6 %). This study provides promising strategies for scaling up plastic treatment in bioreactors through a hybrid collaboration of biological and abiotic processes.
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Affiliation(s)
- Ruizhi Xing
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
| | - Kaipeng Zhai
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
| | - Xian Du
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
| | - Xiaoyan Chen
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
| | - Zhi Chen
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
| | - Shungui Zhou
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
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Safdar A, Ismail F, Safdar M, Imran M. Eco-friendly approaches for mitigating plastic pollution: advancements and implications for a greener future. Biodegradation 2024; 35:493-518. [PMID: 38310578 DOI: 10.1007/s10532-023-10062-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 12/13/2023] [Indexed: 02/06/2024]
Abstract
Plastic pollution has become a global problem since the extensive use of plastic in industries such as packaging, electronics, manufacturing and construction, healthcare, transportation, and others. This has resulted in an environmental burden that is continually growing, which has inspired many scientists as well as environmentalists to come up with creative solutions to deal with this problem. Numerous studies have been reviewed to determine practical, affordable, and environmentally friendly solutions to regulate plastic waste by leveraging microbes' innate abilities to naturally decompose polymers. Enzymatic breakdown of plastics has been proposed to serve this goal since the discovery of enzymes from microbial sources that truly interact with plastic in its naturalistic environment and because it is a much faster and more effective method than others. The scope of diverse microbes and associated enzymes in polymer breakdown is highlighted in the current review. The use of co-cultures or microbial consortium-based techniques for the improved breakdown of plastic products and the generation of high-value end products that may be utilized as prototypes of bioenergy sources is highlighted. The review also offers a thorough overview of the developments in the microbiological and enzymatic biological degradation of plastics, as well as several elements that impact this process for the survival of our planet.
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Affiliation(s)
- Ayesha Safdar
- Department of Biochemistry, The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan
- The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan
| | - Fatima Ismail
- Department of Biochemistry, The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan.
- The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan.
| | - Maryem Safdar
- University College of Conventional Medicine, The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan
- The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan
| | - Muhammad Imran
- Institute of Advanced Study, Shenzhen University, Shenzhen, 5180600, Guangdong Province, China.
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Amanna R, Rakshit SK. Review of nomenclature and methods of analysis of polyethylene terephthalic acid hydrolyzing enzymes activity. Biodegradation 2024; 35:341-360. [PMID: 37688750 DOI: 10.1007/s10532-023-10048-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 08/15/2023] [Indexed: 09/11/2023]
Abstract
Enzymatic degradation of polyethylene terephthalic acid (PET) has been gaining increasing importance. This has resulted in a significant increase in the search for newer enzymes and the development of more efficient enzyme-based systems. Due to the lack of a standard screening process, screening new enzymes has relied on other assays to determine the presence of esterase activity. This, in turn, has led to various nomenclatures and methods used to describe them and measure their activity. Since all PET-hydrolyzing enzymes are α/β hydrolases, they catalyze a serine nucleophilic attack and cleave an ester bond. They are lipases, esterases, cutinases and hydrolases. This has been used interchangeably, leading to difficulties while comparing results and evaluating progress. This review discusses the varied enzyme nomenclature being adapted, the different assays and analysis methods reported, and the strategies used to increase PET-hydrolyzing enzyme efficiency. A section on the various ways to quantify PET hydrolysis is also covered.
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Affiliation(s)
- Ruth Amanna
- Department of Biotechnology, Lakehead University, Thunder Bay, ON, Canada
- Biorefining Research Institute (BRI), Lakehead University, Thunder Bay, ON, Canada
| | - Sudip K Rakshit
- Department of Biotechnology, Lakehead University, Thunder Bay, ON, Canada.
- Biorefining Research Institute (BRI), Lakehead University, Thunder Bay, ON, Canada.
- Department of Chemical Engineering, Lakehead University, Thunder Bay, ON, Canada.
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9
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Verschoor JA, Croese MRJ, Lakemeier SE, Mugge A, Burgers CMC, Innocenti P, Willemse J, Crooijmans ME, van Wezel GP, Ram AFJ, de Winde JH. Polyester degradation by soil bacteria: identification of conserved BHETase enzymes in Streptomyces. Commun Biol 2024; 7:725. [PMID: 38867087 PMCID: PMC11169514 DOI: 10.1038/s42003-024-06414-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 06/05/2024] [Indexed: 06/14/2024] Open
Abstract
The rising use of plastic results in an appalling amount of waste which is scattered into the environment. One of these plastics is PET which is mainly used for bottles. We have identified and characterized an esterase from Streptomyces, annotated as LipA, which can efficiently degrade the PET-derived oligomer BHET. The Streptomyces coelicolor ScLipA enzyme exhibits varying sequence similarity to several BHETase/PETase enzymes, including IsPETase, TfCut2, LCC, PET40 and PET46. Of 96 Streptomyces strains, 18% were able to degrade BHET via one of three variants of LipA, named ScLipA, S2LipA and S92LipA. SclipA was deleted from S. coelicolor resulting in reduced BHET degradation. Overexpression of all LipA variants significantly enhanced BHET degradation. All variants were expressed in E. coli for purification and biochemical analysis. The optimum conditions were determined as pH 7 and 25 °C for all variants. The activity on BHET and amorphous PET film was investigated. S2LipA efficiently degraded BHET and caused roughening and indents on the surface of PET films, comparable to the activity of previously described TfCut2 under the same conditions. The abundance of the S2LipA variant in Streptomyces suggests an environmental advantage towards the degradation of more polar substrates including these polluting plastics.
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Affiliation(s)
- Jo-Anne Verschoor
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Martijn R J Croese
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Sven E Lakemeier
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Annemiek Mugge
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Charlotte M C Burgers
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Paolo Innocenti
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Joost Willemse
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Marjolein E Crooijmans
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Gilles P van Wezel
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Arthur F J Ram
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands
| | - Johannes H de Winde
- Molecular Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333BE, Leiden, The Netherlands.
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10
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Vincent CV, Bignell DRD. Regulation of virulence mechanisms in plant-pathogenic Streptomyces. Can J Microbiol 2024; 70:199-212. [PMID: 38190652 DOI: 10.1139/cjm-2023-0171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2024]
Abstract
Streptomyces have a uniquely complex developmental life cycle that involves the coordination of morphological differentiation with the production of numerous bioactive specialized metabolites. The majority of Streptomyces spp. are soil-dwelling saprophytes, while plant pathogenicity is a rare attribute among members of this genus. Phytopathogenic Streptomyces are responsible for economically important diseases such as common scab, which affects potato and other root crops. Following the acquisition of genes encoding virulence factors, Streptomyces pathogens are expected to have specifically adapted their regulatory pathways to enable transition from a primarily saprophytic to a pathogenic lifestyle. Investigations of the regulation of pathogenesis have primarily focused on Streptomyces scabiei and the principal pathogenicity determinant thaxtomin A. The coordination of growth and thaxtomin A production in this species is controlled in a hierarchical manner by cluster-situated regulators, pleiotropic regulators, signalling and plant-derived molecules, and nutrients. Although the majority of phytopathogenic Streptomyces produce thaxtomins, many also produce additional virulence factors, and there are scab-causing pathogens that do not produce thaxtomins. The development of effective control strategies for common scab and other Streptomyces plant diseases requires a more in-depth understanding of the genetic and environmental factors that modulate the plant pathogenic lifestyle of these organisms.
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Affiliation(s)
- Corrie V Vincent
- Department of Biology, Memorial University of Newfoundland, St. John's, NL, Canada
| | - Dawn R D Bignell
- Department of Biology, Memorial University of Newfoundland, St. John's, NL, Canada
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11
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Singh P, Lau CSS, Siah SY, Chua KO, Ting ASY. Microbial degradation of low-density polyethylene, polyethylene terephthalate, and polystyrene by novel isolates from plastic-polluted environment. Arch Microbiol 2024; 206:188. [PMID: 38519709 DOI: 10.1007/s00203-024-03895-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 02/10/2024] [Accepted: 02/11/2024] [Indexed: 03/25/2024]
Abstract
Biodegradation is an eco-friendly measure to address plastic pollution. This study screened four bacterial isolates that were capable of degrading recalcitrant polymers, i.e., low-density polyethylene, polyethylene terephthalate, and polystyrene. The unique bacterial isolates were obtained from plastic polluted environment. Dermacoccus sp. MR5 (accession no. OP592184) and Corynebacterium sp. MR10 (accession no. OP536169) from Malaysian mangroves and Bacillus sp. BS5 (accession no. OP536168) and Priestia sp. TL1 (accession no. OP536170) from a sanitary landfill. The four isolates showed a gradual increase in the microbial count and the production of laccase and esterase enzymes after 4 weeks of incubation with the polymers (independent experiment set). Bacillus sp. BS5 produced the highest laccase 15.35 ± 0.19 U/mL and showed the highest weight loss i.e., 4.84 ± 0.6% for PS. Fourier transform infrared spectroscopy analysis confirmed the formation of carbonyl and hydroxyl groups as a result of oxidation reactions by enzymes. Liquid chromatography-mass spectrometry analysis showed the oxidation of the polymers to small molecules (alcohol, ethers, and acids) assimilated by the microbes during the degradation. Field emission scanning electron microscopy showed bacterial colonization, biofilm formation, and surface erosion on the polymer surface. The result provided significant insight into enzyme activities and the potential of isolates to target more than one type of polymer for degradation.
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Affiliation(s)
- Pooja Singh
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia
| | - Claudeen Sze Siang Lau
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia
| | - Sze Yin Siah
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia
| | - Kah Ooi Chua
- Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Adeline Su Yien Ting
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia.
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12
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Choi J, Kim H, Ahn YR, Kim M, Yu S, Kim N, Lim SY, Park JA, Ha SJ, Lim KS, Kim HO. Recent advances in microbial and enzymatic engineering for the biodegradation of micro- and nanoplastics. RSC Adv 2024; 14:9943-9966. [PMID: 38528920 PMCID: PMC10961967 DOI: 10.1039/d4ra00844h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 03/19/2024] [Indexed: 03/27/2024] Open
Abstract
This review examines the escalating issue of plastic pollution, specifically highlighting the detrimental effects on the environment and human health caused by microplastics and nanoplastics. The extensive use of synthetic polymers such as polyethylene (PE), polyethylene terephthalate (PET), and polystyrene (PS) has raised significant environmental concerns because of their long-lasting and non-degradable characteristics. This review delves into the role of enzymatic and microbial strategies in breaking down these polymers, showcasing recent advancements in the field. The intricacies of enzymatic degradation are thoroughly examined, including the effectiveness of enzymes such as PETase and MHETase, as well as the contribution of microbial pathways in breaking down resilient polymers into more benign substances. The paper also discusses the impact of chemical composition on plastic degradation kinetics and emphasizes the need for an approach to managing the environmental impact of synthetic polymers. The review highlights the significance of comprehending the physical characteristics and long-term impacts of micro- and nanoplastics in different ecosystems. Furthermore, it points out the environmental and health consequences of these contaminants, such as their ability to cause cancer and interfere with the endocrine system. The paper emphasizes the need for advanced analytical methods and effective strategies for enzymatic degradation, as well as continued research and development in this area. This review highlights the crucial role of enzymatic and microbial strategies in addressing plastic pollution and proposes methods to create effective and environmentally friendly solutions.
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Affiliation(s)
- Jaewon Choi
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Hongbin Kim
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Yu-Rim Ahn
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Minse Kim
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Seona Yu
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Nanhyeon Kim
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Su Yeon Lim
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Jeong-Ann Park
- Department of Environmental Engineering, Kangwon National University Chuncheon 24341 Republic of Korea
| | - Suk-Jin Ha
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Kwang Suk Lim
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
| | - Hyun-Ouk Kim
- Division of Chemical Engineering and Bioengineering, College of Art, Culture and Engineering, Kangwon National University Chuncheon Korea
- Department of Smart Health Science and Technology, Kangwon National University Chuncheon Korea
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13
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Lv S, Li Y, Zhao S, Shao Z. Biodegradation of Typical Plastics: From Microbial Diversity to Metabolic Mechanisms. Int J Mol Sci 2024; 25:593. [PMID: 38203764 PMCID: PMC10778777 DOI: 10.3390/ijms25010593] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 12/22/2023] [Accepted: 12/27/2023] [Indexed: 01/12/2024] Open
Abstract
Plastic production has increased dramatically, leading to accumulated plastic waste in the ocean. Marine plastics can be broken down into microplastics (<5 mm) by sunlight, machinery, and pressure. The accumulation of microplastics in organisms and the release of plastic additives can adversely affect the health of marine organisms. Biodegradation is one way to address plastic pollution in an environmentally friendly manner. Marine microorganisms can be more adapted to fluctuating environmental conditions such as salinity, temperature, pH, and pressure compared with terrestrial microorganisms, providing new opportunities to address plastic pollution. Pseudomonadota (Proteobacteria), Bacteroidota (Bacteroidetes), Bacillota (Firmicutes), and Cyanobacteria were frequently found on plastic biofilms and may degrade plastics. Currently, diverse plastic-degrading bacteria are being isolated from marine environments such as offshore and deep oceanic waters, especially Pseudomonas spp. Bacillus spp. Alcanivoras spp. and Actinomycetes. Some marine fungi and algae have also been revealed as plastic degraders. In this review, we focused on the advances in plastic biodegradation by marine microorganisms and their enzymes (esterase, cutinase, laccase, etc.) involved in the process of biodegradation of polyethylene terephthalate (PET), polystyrene (PS), polyethylene (PE), polyvinyl chloride (PVC), and polypropylene (PP) and highlighted the need to study plastic biodegradation in the deep sea.
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Affiliation(s)
- Shiwei Lv
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen 361005, China; (S.L.); (Y.L.); (S.Z.)
- School of Environmental Science, Harbin Institute of Technology, Harbin 150090, China
| | - Yufei Li
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen 361005, China; (S.L.); (Y.L.); (S.Z.)
- School of Marine Sciences, China University of Geosciences, Beijing 100083, China
| | - Sufang Zhao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen 361005, China; (S.L.); (Y.L.); (S.Z.)
| | - Zongze Shao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen 361005, China; (S.L.); (Y.L.); (S.Z.)
- School of Environmental Science, Harbin Institute of Technology, Harbin 150090, China
- School of Marine Sciences, China University of Geosciences, Beijing 100083, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
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14
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Talukdar A, Kundu P, Bhattacharjee S, Dey S, Dey A, Biswas JK, Chaudhuri P, Bhattacharya S. Microplastics in mangroves with special reference to Asia: Occurrence, distribution, bioaccumulation and remediation options. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 904:166165. [PMID: 37574065 DOI: 10.1016/j.scitotenv.2023.166165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Revised: 07/15/2023] [Accepted: 08/07/2023] [Indexed: 08/15/2023]
Abstract
Microplastics (MPs) are a new and lesser-known pollutant that has intrigued the interest of scientists all over the world in recent decades. MP (<5mm in size) can enter marine environments such as mangrove forests in a variety of ways, interfering with the health of the environment and organisms. Mangroves are now getting increasingly exposed to microplastic contamination due to their proximity to human activities and their position as critical transitional zones between land and sea. The present study reviews the status of MPs contamination specifically in mangrove ecosystems situated in Asia. Different sources and characteristics of MPs, subsequent deposition of MPs in mangrove water and sediments, bioaccumulation in different organisms are discussed in this context. MP concentrations in sediments and organisms were higher in mangrove forests exposed to fishing, coastal tourism, urban, and industrial wastewater than in pristine areas. The distribution of MPs varies from organism to organism in mangrove ecosystems, and is significantly influenced by their morphometric characteristics, feeding habits, dwelling environment etc. Mangrove plants can accumulate microplastics in their roots, stem and leaves through absorption, adsorption and entrapment helping in reducing abundance of microplastic in the surrounding environment. Several bacterial and fungal species are reported from these mangrove ecosystems, which are capable of degrading MPs. The bioremediation potential of mangrove plants offers an innovative and sustainable approach to mitigate microplastic pollution. Diverse mechanisms of MP biodegradation by mangrove dwelling organisms are discussed in this context. Biotechnological applications can be utilized to explore the genetic potential of the floral and faunal species found in the Asian mangroves. Detailed studies are required to monitor, control, and evaluate MP pollution in sediments and various organisms in mangrove ecosystems in Asia as well as in other parts of the world.
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Affiliation(s)
| | - Pritha Kundu
- School of Ecology and Environment Studies, Nalanda University, Rajgir, Nalanda, Bihar 803116, India
| | - Shrayan Bhattacharjee
- Ecosystem and Ecology Laboratory, Post-graduate Department of Zoology, Ramakrishna Mission Vivekananda Centenary College, Rahara, Kolkata 700118, India
| | - Satarupa Dey
- Department of Botany, Shyampur Siddheswari Mahavidyalaya, Howrah 711301, West Bengal, India
| | - Abhijit Dey
- Department of Life Sciences, Presidency University, 86/1 College Street, Kolkata 700073, West Bengal, India
| | - Jayanta Kumar Biswas
- Enviromicrobiology, Ecotoxicology & Ecotechnology Research Laboratory (3E-MicroToxTech Lab), Department of Ecological Studies, and International Centre for Ecological Engineering, University of Kalyani, Nadia, West Bengal 741235, India
| | - Punarbasu Chaudhuri
- Department of Environmental Science, University of Calcutta, Kolkata 700019, West Bengal, India
| | - Sayan Bhattacharya
- School of Ecology and Environment Studies, Nalanda University, Rajgir, Nalanda, Bihar 803116, India.
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15
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Thacharodi A, Meenatchi R, Hassan S, Hussain N, Bhat MA, Arockiaraj J, Ngo HH, Le QH, Pugazhendhi A. Microplastics in the environment: A critical overview on its fate, toxicity, implications, management, and bioremediation strategies. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 349:119433. [PMID: 39492398 DOI: 10.1016/j.jenvman.2023.119433] [Citation(s) in RCA: 35] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 09/26/2023] [Accepted: 10/20/2023] [Indexed: 11/05/2024]
Abstract
Microplastics are small plastic pieces ranging in size from 1μ to <5 mm in diameter, are water-soluble, and can be either primary as they are initially created in small sizes or secondary as they develop due to plastic degradation. Approximately 360 million tons of plastic are produced globally every year, with only 7% recycled, leaving the majority of waste to accumulate in the environment and pose a serious threat in the form of microplastics. All ecosystems, particularly freshwater ecosystems, experience microplastic accumulation and are also prone to degrading processes. Degraded microplastics accumulate in many aquatic systems, contaminate them, and enter the food chain as a result of the excessive discharge of plastic trash annually from the domestic to the industrial sector. Due to their pervasiveness, these tiny plastic particles are constantly present in freshwater environments, which are essential to human life. In this sense, microplastic pollution is seen as a worldwide problem that has a detrimental impact on every component of the freshwater environment. Microplastics act as carriers for various toxic components such as additives and other hazardous substances from industrial and urbanized areas. These microplastic-contaminated effluents are ultimately transferred into water systems and directly ingested by organisms associated with a particular ecosystem. The microplastics components also pose an indirect threat to aquatic ecosystems by adsorbing surrounding water pollutants. This review mainly focuses on the sources of microplastics, the ecotoxicity of microplastics and the impact microplastics have on aquatic and marine life, management, and bioremediation of microplastics. Policies and strategies adopted by the Government to combat microplastic pollution are also discussed in this review.
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Affiliation(s)
- Aswin Thacharodi
- Dr. Thacharodi's Laboratories, Department of Research and Development, Puducherry, 605005, India
| | - Ramu Meenatchi
- Department of Biotechnology, SRM Institute of Science and Technology, Faculty of Science and Humanities, Kattankulathur, Chengalpattu District, Tamil Nadu, 603 203, India
| | - Saqib Hassan
- Department of Biotechnology, School of Bio and Chemical Engineering, Sathyabama Institute of Science and Technology, Chennai, Tamil Nadu, 600119, India
| | - Naseer Hussain
- School of Life Sciences, B. S. Abdur Rahman Crescent Institute of Science and Technology, Vandalur, Chennai, Tamil Nadu, 600048, India
| | - Mansoor Ahmad Bhat
- Eskişehir Technical University, Faculty of Engineering, Department of Environmental Engineering, Eskişehir, 26555, Turkey
| | - Jesu Arockiaraj
- Department of Biotechnology, SRM Institute of Science and Technology, Faculty of Science and Humanities, Kattankulathur, Chengalpattu District, Tamil Nadu, 603 203, India
| | - Huu Hao Ngo
- Centre for Technology in Water and Wastewater, School of Civil and Environmental Engineering, University of Technology Sydney, Sydney, NSW, 2007, Australia
| | - Quynh Hoang Le
- School of Medicine and Pharmacy, Duy Tan University, Da Nang, Viet Nam; Institute of Research and Development, Duy Tan University, Da Nang, Viet Nam
| | - Arivalagan Pugazhendhi
- School of Medicine and Pharmacy, Duy Tan University, Da Nang, Viet Nam; Institute of Research and Development, Duy Tan University, Da Nang, Viet Nam.
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16
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Kothawale SS, Kumar L, Singh SP. Role of organisms and their enzymes in the biodegradation of microplastics and nanoplastics: A review. ENVIRONMENTAL RESEARCH 2023:116281. [PMID: 37276977 DOI: 10.1016/j.envres.2023.116281] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 04/27/2023] [Accepted: 05/28/2023] [Indexed: 06/07/2023]
Abstract
Microplastic (MP) and Nanoplastic (NP) contamination have become a critical ecological concern due to their persistent presence in every aspect of the ecosystem and their potentially harmful effects. The current approaches to eradicate these wastes by burning up and dumping adversely impact the environment, while recycling has its own challenges. As a result, applying degradation techniques to eliminate these recalcitrant polymers has been a focus of scientific investigation in the recent past. Biological, photocatalytic, electrocatalytic, and, recently, nanotechnologies have been studied to degrade these polymers. Nevertheless, it is hard to degrade MPs and NPs in the environment, and these degradation techniques are comparatively inefficient and require further development. The recent research focuses on the potential use of microbes to degrade MPs and NPs as a sustainable solution. Therefore, considering the recent advancements in this important research field, this review highlights the utilization of organisms and enzymes for the biodegradation of the MPs and NPs with their probable degradation mechanisms. This review provides insight into various microbial entities and their enzymes for the biodegradation of MPs. In addition, owing to the lack of research on the biodegradation of NPs, the perspective of applying these processes to NPs degradation has also been looked at. Finally, a critical evaluation of the recent development and perspective for future research to improve the effective removal of MPs and NPs in the environment through biodegradation is also discussed.
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Affiliation(s)
- Sheetal S Kothawale
- Centre for Research in Nanotechnology & Science (CRNTS), Indian Institute of Technology Bombay, Mumbai, 400076, India
| | - Lalit Kumar
- Department of Energy Science and Engineering Department (DESE), Indian Institute of Technology Bombay, Mumbai, 400076, India
| | - Swatantra P Singh
- Centre for Research in Nanotechnology & Science (CRNTS), Indian Institute of Technology Bombay, Mumbai, 400076, India; Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, Mumbai, 400076, India; Interdisciplinary Program in Climate Studies, Indian Institute of Technology Bombay, Mumbai, 400076, India.
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17
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Haq IU, Mukhtar Z, Anwar-Ul-Haq M, Liaqat S. Deciphering host-pathogen interaction during Streptomyces spp. infestation of potato. Arch Microbiol 2023; 205:222. [PMID: 37149838 DOI: 10.1007/s00203-023-03560-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Revised: 04/16/2023] [Accepted: 04/18/2023] [Indexed: 05/08/2023]
Abstract
Potato crop, currently, is the staple food crop of about 1.3 billion global population. Potato is attaining even more admiration globally day by day owing to its public acceptability. However, potato sustainable production is distinctly challenged by multiple factors like diseases, pests and climate change etc. Among diseases, common scab is one of the prime threats to potato crop due to its soil-borne nature and versatility in phytotoxins' secretion. Common scab is caused multiple number of phytopathogenic streptomyces strains. Despite extensive research programs, researchers are still unable to identify a significant solution to this threat that is proliferating exceptional rate across the globe. To develop feasible remedies, adequate information regarding host-pathogen interaction should be available. This review possesses insights on existing pathogenic species, the evolution of novel pathogenic streptomyces spp. and phytotoxins produced by the pathogenic strains. Furthermore, which type of physiological, biochemical and genetic activities occur during pathogen's infestation of the host are also canvassed.
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Affiliation(s)
- Ihtisham Ul Haq
- National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan.
- Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan.
- Ayub Agricultural Research Institute, Faisalabad, Pakistan.
| | - Zahid Mukhtar
- National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
- Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
| | | | - Sana Liaqat
- National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
- Pakistan Institute of Engineering and Applied Sciences (PIEAS), Islamabad, Pakistan
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18
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Idris SN, Amelia TSM, Bhubalan K, Lazim AMM, Zakwan NAMA, Jamaluddin MI, Santhanam R, Amirul AAA, Vigneswari S, Ramakrishna S. The degradation of single-use plastics and commercially viable bioplastics in the environment: A review. ENVIRONMENTAL RESEARCH 2023; 231:115988. [PMID: 37105296 DOI: 10.1016/j.envres.2023.115988] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 04/17/2023] [Accepted: 04/24/2023] [Indexed: 05/15/2023]
Abstract
Plastics have become an integral part of human life. Single-use plastics (SUPs) are disposable plastics designed to be used once then promptly discarded or recycled. This SUPs range from packaging and takeaway containers to disposable razors and hotel toiletries. Synthetic plastics, which are made of non-renewable petroleum and natural gas resources, require decades to perpetually disintegrate in nature thus contribute to plastic pollution worldwide, especially in marine environments. In response to these problems, bioplastics or bio-based and biodegradable polymers from renewable sources has been considered as an alternative. Understanding the mechanisms behind the degradation of conventional SUPs and biodegradability of their greener counterpart, bioplastics, is crucial for appropriate material selection in the future. This review aims to provide insights into the degradation or disintegration of conventional single-use plastics and the biodegradability of the different types of greener-counterparts, bioplastics, their mechanisms, and conditions. This review highlights on the biodegradation in the environments including composting systems. Here, the various types of alternative biodegradable polymers, such as bacterially biosynthesised bioplastics, natural fibre-reinforced plastics, starch-, cellulose-, lignin-, and soy-based polymers were explored. Review of past literature revealed that although bioplastics are relatively eco-friendly, their natural compositions and properties are inconsistent. Furthermore, the global plastic market for biodegradable plastics remains relatively small and require further research and commercialization efforts, especially considering the urgency of plastic and microplastic pollution as currently critical global issue. Biodegradable plastics have potential to replace conventional plastics as they show biodegradation ability under real environments, and thus intensive research on the various biodegradable plastics is needed to inform stakeholders and policy makers on the appropriate response to the gradually emerging biodegradable plastics.
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Affiliation(s)
- Siti Norliyana Idris
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | - Tan Suet May Amelia
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | - Kesaven Bhubalan
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia; Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | - Anim Maisara Mohd Lazim
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | | | - Muhammad Imran Jamaluddin
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | - Rameshkumar Santhanam
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia
| | - Al-Ashraf Abdullah Amirul
- School of Biological Science, Universiti Sains Malaysia, Pulau Pinang, Malaysia; Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas, Penang, Malaysia; Malaysian Institute of Pharmaceuticals and Nutraceuticals, National Institutes of Biotechnology Malaysia, Penang, Malaysia.
| | - Sevakumaran Vigneswari
- Institute of Marine Biotechnology, Universiti Malaysia Terengganu, Kuala Nerus, Terengganu, Malaysia.
| | - Seeram Ramakrishna
- Center for Nanotechnology and Sustainability, national University of Singapore, 119260, Singapore.
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19
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Sharma H, Neelam DK. Understanding challenges associated with plastic and bacterial approach toward plastic degradation. J Basic Microbiol 2023; 63:292-307. [PMID: 36470670 DOI: 10.1002/jobm.202200428] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 10/20/2022] [Accepted: 11/11/2022] [Indexed: 12/12/2022]
Abstract
Plastic is widely used in every sector due to its stability, durability, and low cost. The widespread use of plastic results in the compilation of plastic waste in the environment. The buildup of such a vast volume of plastic garbage has emerged as the primary cause of environmental pollution, including air, land, and water pollution. Plastics contain various harmful chemicals and toxic substances that can leak and adversely affect humans and other organisms. Managing this much plastic waste is a very challenging task; therefore, an appropriate technique is needed to address this problem. Various methods are used, such as chemical, physical, and biological, to degrade plastic waste. Bacterial degradation is known to be the most effective technique for the biodegradation approach to overcome this issue. Biodegradation has played a crucial role in removing these polluting wastes more efficiently and eco-friendly. The process of biodegradation involves a variety of bacteria, such as Acinetobacter baumannii, Bacillus weihenstephanensis, Pseudomonas aeruginosa, Pseudomonas fluorescens, Rhodococcus ruber, and so on. Biodegradation of plastic takes place through various biochemical pathways, including biodeterioration, biofragmentation, assimilation, and mineralization. During biodegradation, bacteria produce enzymes like esterase, cutinase, laccase, lipase, and others that break down and transform plastic polymers into microbial biomass and gases. This review aims to explain how bacteria contribute to the breakdown of plastic.
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Affiliation(s)
- Hemlata Sharma
- Department of Microbiology, Faculty of Science, JECRC University, Jaipur, Rajasthan, India
| | - Deepesh K Neelam
- Department of Microbiology, Faculty of Science, JECRC University, Jaipur, Rajasthan, India
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20
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Parsaeimehr A, Miller CM, Ozbay G. Microplastics and their interactions with microbiota. Heliyon 2023; 9:e15104. [PMID: 37089279 PMCID: PMC10113872 DOI: 10.1016/j.heliyon.2023.e15104] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 03/16/2023] [Accepted: 03/27/2023] [Indexed: 04/03/2023] Open
Abstract
As a new pollutant, Microplastics (MPs) are globally known for their negative impacts on different ecosystems and living organisms. MPs are easily taken up by the ecosystem in a variety of organisms due to their small size, and cause immunological, neurological, and respiratory diseases in the impacted organism. Moreover, in the impacted environments, MPs can release toxic additives and act as a vector and scaffold for colonization and transportation of specific microbes and lead to imbalances in microbiota and the biogeochemical and nutrients dynamic. To address the concerns on controlling the MPs pollution on the microbiota and ecosystem, the microbial biodegradation of MPs can be potentially considered as an effective environment friendly approach. The objectives of the presented paper are to provide information on the toxicological effects of MPs on microbiota, to discuss the negative impacts of microbial colonization of MPs, and to introduce the microbes with biodegradation ability of MPs.
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21
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Kolitha BS, Jayasekara SK, Tannenbaum R, Jasiuk IM, Jayakody LN. Repurposing of waste PET by microbial biotransformation to functionalized materials for additive manufacturing. J Ind Microbiol Biotechnol 2023; 50:kuad010. [PMID: 37248049 PMCID: PMC10549213 DOI: 10.1093/jimb/kuad010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 05/20/2023] [Indexed: 05/31/2023]
Abstract
Plastic waste is an outstanding environmental thread. Poly(ethylene terephthalate) (PET) is one of the most abundantly produced single-use plastics worldwide, but its recycling rates are low. In parallel, additive manufacturing is a rapidly evolving technology with wide-ranging applications. Thus, there is a need for a broad spectrum of polymers to meet the demands of this growing industry and address post-use waste materials. This perspective article highlights the potential of designing microbial cell factories to upcycle PET into functionalized chemical building blocks for additive manufacturing. We present the leveraging of PET hydrolyzing enzymes and rewiring the bacterial C2 and aromatic catabolic pathways to obtain high-value chemicals and polymers. Since PET mechanical recycling back to original materials is cost-prohibitive, the biochemical technology is a viable alternative to upcycle PET into novel 3D printing materials, such as replacements for acrylonitrile butadiene styrene. The presented hybrid chemo-bio approaches potentially enable the manufacturing of environmentally friendly degradable or higher-value high-performance polymers and composites and their reuse for a circular economy. ONE-SENTENCE SUMMARY Biotransformation of waste PET to high-value platform chemicals for additive manufacturing.
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Affiliation(s)
- Bhagya S Kolitha
- School of Biological Science, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
| | - Sandhya K Jayasekara
- School of Biological Science, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
| | - Rina Tannenbaum
- Department of Materials Science and Chemical Engineering, the Stony Brook University Cancer Center, Stony Brook University, Stony Brook, NY 11794, USA
| | - Iwona M Jasiuk
- Department of Mechanical Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Lahiru N Jayakody
- School of Biological Science, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
- Fermentation Science Institute, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
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22
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Yang XG, Wen PP, Yang YF, Jia PP, Li WG, Pei DS. Plastic biodegradation by in vitro environmental microorganisms and in vivo gut microorganisms of insects. Front Microbiol 2023; 13:1001750. [PMID: 36687617 PMCID: PMC9852869 DOI: 10.3389/fmicb.2022.1001750] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2022] [Accepted: 11/22/2022] [Indexed: 01/09/2023] Open
Abstract
Traditional plastics, such as polyethylene (PE), polystyrene (PS), polypropylene (PP), polyvinyl chloride (PVC), polyethylene terephthalate (PET), polyurethane (PUR), and other plastic polymers, are difficult to degrade and are gradually accumulated in the environment to cause a serious environmental problem, which is urgently needed to develop novel treatments or control technology. The biodegradation of plastics has gained great attention due to the advantages of green and safe characteristics. Microorganisms play a vital role in the biodegradation of plastics, including environmental microbes (in vitro) and gut microbes of insects (in vivo). Microbial degradation in environmental conditions in vitro is extremely slow for major plastics at degradation rates on the basis of a month or even a year time, but recent discoveries show that the fast biodegradation of specific plastics, such as PS, PE, and PUR, in some invertebrates, especially insects, could be enhanced at rates on basis of hours; the biodegradation in insects is likely to be gut microbial-dependent or synergetic bioreactions in animal digestive systems. This review comprehensively summarizes the latest 7-year (2016-2022) publications on plastic biodegradation by insects and microorganisms, elucidates the mechanism of plastic degradation in insects and environmental microbes, and highlights the cutting-edge perspectives for the potential applications of plastic biodegradation.
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Affiliation(s)
- Xian-Guang Yang
- State Key Laboratory Base of Cell Differentiation and Regulation, College of Life Science, Henan Normal University, Xinxiang, China
| | - Ping-Ping Wen
- State Key Laboratory Base of Cell Differentiation and Regulation, College of Life Science, Henan Normal University, Xinxiang, China
- School of Public Health, Chongqing Medical University, Chongqing, China
| | - Yi-Fan Yang
- State Key Laboratory Base of Cell Differentiation and Regulation, College of Life Science, Henan Normal University, Xinxiang, China
- School of Public Health, Chongqing Medical University, Chongqing, China
| | - Pan-Pan Jia
- School of Public Health, Chongqing Medical University, Chongqing, China
| | - Wei-Guo Li
- State Key Laboratory Base of Cell Differentiation and Regulation, College of Life Science, Henan Normal University, Xinxiang, China
| | - De-Sheng Pei
- School of Public Health, Chongqing Medical University, Chongqing, China
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Zhai X, Zhang XH, Yu M. Microbial colonization and degradation of marine microplastics in the plastisphere: A review. Front Microbiol 2023; 14:1127308. [PMID: 36876073 PMCID: PMC9981674 DOI: 10.3389/fmicb.2023.1127308] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 01/27/2023] [Indexed: 02/19/2023] Open
Abstract
Marine microplastic pollution is a growing problem for ecotoxicology that needs to be resolved. In particular, microplastics may be carriers of "dangerous hitchhikers," pathogenic microorganisms, i.e., Vibrio. Microplastics are colonized by bacteria, fungi, viruses, archaea, algae and protozoans, resulting in the biofilm referred to as the "plastisphere." The microbial community composition of the plastisphere differs significantly from those of surrounding environments. Early dominant pioneer communities of the plastisphere belong to primary producers, including diatoms, cyanobacteria, green algae and bacterial members of the Gammaproteobacteria and Alphaproteobacteria. With time, the plastisphere mature, and the diversity of microbial communities increases quickly to include more abundant Bacteroidetes and Alphaproteobacteria than natural biofilms. Factors driving the plastisphere composition include environmental conditions and polymers, with the former having a much larger influence on the microbial community composition than polymers. Microorganisms of the plastisphere may play key roles in degradation of plastic in the oceans. Up to now, many bacterial species, especially Bacillus and Pseudomonas as well as some polyethylene degrading biocatalysts, have been shown to be capable of degrading microplastics. However, more relevant enzymes and metabolisms need to be identified. Here, we elucidate the potential roles of quorum sensing on the plastic research for the first time. Quorum sensing may well become a new research area to understand the plastisphere and promote microplastics degradation in the ocean.
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Affiliation(s)
- Xinyi Zhai
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China
| | - Xiao-Hua Zhang
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China.,Laboratory for Marine Ecology and Environmental Science, Laoshan Laboratory, Qingdao, China.,Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, China
| | - Min Yu
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, College of Marine Life Sciences, Ocean University of China, Qingdao, China.,Laboratory for Marine Ecology and Environmental Science, Laoshan Laboratory, Qingdao, China.,Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, China
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24
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Application of Milk Permeate as an Inducer for the Production of Microbial Recombinant Lipolytic Enzymes. FERMENTATION-BASEL 2022. [DOI: 10.3390/fermentation9010027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Recombinantly produced enzymes are applied in many fields, ranging from medicine to food and nutrition, production of detergents, textile, leather, paper, pulp, and plastics. Thus, the cost-effectiveness of recombinant enzyme synthesis is an important issue in biotechnological industry. Isopropyl-β-D-thiogalactoside (IPTG), an analog of lactose, is currently the most widely used chemical agent for the induction of recombinant enzyme synthesis. However, the use of IPTG can lead to production of toxic elements and can introduce physiological stress to cells. Thus, this study aims to find a simpler, cheaper, and safer way to produce recombinant enzymes. In this study, production of several previously designed recombinant lipolytic enzymes (GDEst-95 esterase, GD-95RM lipase, fused GDEst-lip lipolytic enzyme, and putative cutinase Cut+SP from Streptomyces scabiei 87.22) is induced in E. coli BL21 (DE3) using 4 mM milk permeate, a type of waste of the milk manufacturing process possessing >82% lactose. The SDS-PAGE analysis clearly indicates synthesis of all target enzymes during a 2–12 h post-induction timeframe. Further investigation of GDEst-95, GD-95RM, GDEst-lip, and Cut+SP biocatalysts was carried out spectrophotometrically and using zymography method, confirming production of fully active enzymes.
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25
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The application of bioremediation in wastewater treatment plants for microplastics removal: a practical perspective. Bioprocess Biosyst Eng 2022; 45:1865-1878. [PMID: 36173483 DOI: 10.1007/s00449-022-02793-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Accepted: 09/19/2022] [Indexed: 11/27/2022]
Abstract
Wastewater treatment plants (WWTPs) play the role of intercepting microplastics in the environment and provide a platform for bioremediation to remove microplastics. Despite, this opportunity has not been adequately studied. This paper shows the potential ways microplastics-targeted bioremediation could be incorporated into wastewater treatment through the review of relevant literature on bioaugmentation of water treatment processes for pollutants removal. Having reviewed more than 90 papers in this area, it highlights that bioremediation in WWTPs can be employed through bioaugmentation of secondary biological treatment systems, particularly the aerobic conventional activated sludge, sequencing batch reactor, membrane bioreactor and rotating biological contactor. The efficiency of microplastics removal, however, is influenced by the types and forms of microorganisms used, the polymer types and the incubation time (100% for polycaprolactone with Streptomyces thermoviolaceus and 0.76% for low-density polyethylene with Acinetobacter iwoffii). Bioaugmentation of anaerobic system, though possible, is constrained by comparatively less anaerobic microplastics-degrading microorganisms identified. In tertiary system, bioremediation through biological activated carbon and biological aerated filter can be accomplished and enzymatic membrane reactor can be added to the system for deployment of biocatalysts. During sludge treatment, bioaugmentation and addition of enzymes to composting and anaerobic digestion are potential ways to enhance microplastics breakdown. Limitations of bioremediation in wastewater treatment include longer degradation time of microplastics, incomplete biodegradation, variable efficiency, specific microbial activities and uncertainty in colonization. This paper provides important insight into the practical applications of bioremediation in wastewater treatment for microplastics removal.
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26
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Tang KHD, Lock SSM, Yap PS, Cheah KW, Chan YH, Yiin CL, Ku AZE, Loy ACM, Chin BLF, Chai YH. Immobilized enzyme/microorganism complexes for degradation of microplastics: A review of recent advances, feasibility and future prospects. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 832:154868. [PMID: 35358520 DOI: 10.1016/j.scitotenv.2022.154868] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 03/23/2022] [Accepted: 03/23/2022] [Indexed: 06/14/2023]
Abstract
Environmental prevalence of microplastics has prompted the development of novel methods for their removal, one of which involves immobilization of microplastics-degrading enzymes. Various materials including nanomaterials have been studied for this purpose but there is currently a lack of review to present these studies in an organized manner to highlight the advances and feasibility. This article reviewed more than 100 peer-reviewed scholarly papers to elucidate the latest advances in the novel application of immobilized enzyme/microorganism complexes for microplastics degradation, its feasibility and future prospects. This review shows that metal nanoparticle-enzyme complexes improve biodegradation of microplastics in most studies through creating photogenerated radicals to facilitate polymer oxidation, accelerating growth of bacterial consortia for biodegradation, anchoring enzymes and improving their stability, and absorbing water for hydrolysis. In a study, the antimicrobial property of nanoparticles retarded the growth of microorganisms, hence biodegradation. Carbon particle-enzyme complexes enable enzymes to be immobilized on carbon-based support or matrix through covalent bonding, adsorption, entrapment, encapsulation, and a combination of the mechanisms, facilitated by formation of cross-links between enzymes. These complexes were shown to improve microplastics-degrading efficiency and recyclability of enzymes. Other emerging nanoparticles and/or enzymatic technologies are fusion of enzymes with hydrophobins, polymer binding module, peptide and novel nanoparticles. Nonetheless, the enzymes in the complexes present a limiting factor due to limited understanding of the degradation mechanisms. Besides, there is a lack of studies on the degradation of polypropylene and polyvinyl chloride. Genetic bioengineering and metagenomics could provide breakthrough in this area. This review highlights the optimism of using immobilized enzymes/microorganisms to increase the efficiency of microplastics degradation but optimization of enzymatic or microbial activities and synthesis of immobilized enzymes/microorganisms are crucial to overcome the barriers to their wide application.
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Affiliation(s)
- Kuok Ho Daniel Tang
- Environmental Science Program, Division of Science and Technology, Beijing Normal University-Hong Kong Baptist University United International College, Zhuhai 519087, China.
| | - Serene Sow Mun Lock
- CO2 Research Center (CO2RES), Department of Chemical Engineering, Universiti Teknologi PETRONAS, 32610 Seri Iskandar, Malaysia
| | - Pow-Seng Yap
- Department of Civil Engineering, Xi'an Jiaotong-Liverpool University, Suzhou 215123, China
| | - Kin Wai Cheah
- Computing, Engineering and Digital Technologies, Teesside University, Middlesbrough TS1 3BX, United Kingdom
| | - Yi Herng Chan
- PETRONAS Research Sdn. Bhd. (PRSB), Lot 3288 & 3289, Off Jalan Ayer Itam, Kawasan Institusi Bangi, 43000 Kajang, Selangor, Malaysia
| | - Chung Loong Yiin
- Department of Chemical Engineering and Energy Sustainability, Faculty of Engineering, Universiti Malaysia Sarawak (UNIMAS), Kota Samarahan 94300, Sarawak, Malaysia
| | - Andrian Zi En Ku
- Department of Chemical Engineering and Energy Sustainability, Faculty of Engineering, Universiti Malaysia Sarawak (UNIMAS), Kota Samarahan 94300, Sarawak, Malaysia
| | - Adrian Chun Minh Loy
- Department of Chemical Engineering, Monash University, Clayton, VIC 3800, Australia
| | - Bridgid Lai Fui Chin
- Department of Chemical and Energy Engineering, Faculty of Engineering and Science, Curtin University Malaysia, CDT 250, 98009 Miri, Sarawak, Malaysia
| | - Yee Ho Chai
- HICoE-Centre for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Chemical Engineering, Universiti Teknologi PETRONAS, 32610 Seri Iskandar, Perak, Malaysia
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27
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Gámez-Arjona FM, Vitale S, Voxeur A, Dora S, Müller S, Sancho-Andrés G, Montesinos JC, Di Pietro A, Sánchez-Rodríguez C. Impairment of the cellulose degradation machinery enhances Fusarium oxysporum virulence but limits its reproductive fitness. SCIENCE ADVANCES 2022; 8:eabl9734. [PMID: 35442735 PMCID: PMC9020665 DOI: 10.1126/sciadv.abl9734] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Fungal pathogens grow in the apoplastic space, in constant contact with the plant cell wall (CW) that hinders microbe progression while representing a source of nutrients. Although numerous fungal CW modifying proteins have been identified, their role during host colonization remains underexplored. Here, we show that the root-infecting plant pathogen Fusarium oxysporum (Fo) does not require its complete arsenal of cellulases to infect the host plant. Quite the opposite: Fo mutants impaired in cellulose degradation become hypervirulent by enhancing the secretion of virulence factors. On the other hand, the reduction in cellulase activity had a severe negative effect on saprophytic growth and microconidia production during the final stages of the Fo infection cycle. These findings enhance our understanding of the function of plant CW degradation on the outcome of host-microbe interactions and reveal an unexpected role of cellulose degradation in a pathogen's reproductive success.
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Affiliation(s)
| | - Stefania Vitale
- Departamento de Genética, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, 14014 Córdoba, Spain
| | - Aline Voxeur
- Institut Jean-Pierre Bourgin, INRA, Centre National pour la Recherche Scientifique, AgroParisTech, Université Paris-Saclay, RD10, 78026 Versailles Cedex, France
| | - Susanne Dora
- Department of Biology, ETH Zurich, 8092 Zurich, Switzerland
| | - Sascha Müller
- Department of Biology, ETH Zurich, 8092 Zurich, Switzerland
| | | | | | - Antonio Di Pietro
- Departamento de Genética, Campus de Excelencia Internacional Agroalimentario ceiA3, Universidad de Córdoba, 14014 Córdoba, Spain
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28
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Singh Jadaun J, Bansal S, Sonthalia A, Rai AK, Singh SP. Biodegradation of plastics for sustainable environment. BIORESOURCE TECHNOLOGY 2022; 347:126697. [PMID: 35026422 DOI: 10.1016/j.biortech.2022.126697] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Revised: 12/31/2021] [Accepted: 01/06/2022] [Indexed: 06/14/2023]
Abstract
Plastics are a kind of utility product that has become part and parcel of one's life. Their continuous usage, accumulation, and contamination of soil and water pose a severe threat to the biotic and abiotic components of the environment. It not only increases the carbon footprints but also contributes to global warming. This calls for an urgent need to develop novel strategies for the efficient degradation of plastics. The microbial strains equipped with the potential of degrading plastic materials, which can further be converted into usable products, are blessings for the ecosystem. This review comprehensively summarizes the microbial technologies to degrade different plastic types, such as polyethylene (PE), polyethylene terephthalate (PET), polystyrene (PS), polyvinyl chloride (PVC), polypropylene (PP), and polyurethane (PU). The study also describes the utilization of degraded plastic material as feedstock for its conversion into high-value chemicals.
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Affiliation(s)
- Jyoti Singh Jadaun
- Department of Botany, Dayanand Girls Postgraduate College, Kanpur 208001, Uttar Pradesh, India
| | - Shilpi Bansal
- ICAR-Indian Agricultural Research Institute, Pusa, New Delhi 10012, India
| | - Ankit Sonthalia
- SRM Institute of Science and Technology, NCR Campus, Modi Nagar- 201204, Ghaziabad, Uttar Pradesh, India
| | - Amit K Rai
- Institute of Bioresources and Sustainable Development, Regional Centre, Tadong, Sikkim, India
| | - Sudhir P Singh
- Center of Innovative and Applied Bioprocessing, SAS Nagar, Mohali-140306, Punjab, India.
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29
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Soong YHV, Sobkowicz MJ, Xie D. Recent Advances in Biological Recycling of Polyethylene Terephthalate (PET) Plastic Wastes. Bioengineering (Basel) 2022; 9:98. [PMID: 35324787 PMCID: PMC8945055 DOI: 10.3390/bioengineering9030098] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 02/19/2022] [Accepted: 02/23/2022] [Indexed: 11/24/2022] Open
Abstract
Polyethylene terephthalate (PET) is one of the most commonly used polyester plastics worldwide but is extremely difficult to be hydrolyzed in a natural environment. PET plastic is an inexpensive, lightweight, and durable material, which can readily be molded into an assortment of products that are used in a broad range of applications. Most PET is used for single-use packaging materials, such as disposable consumer items and packaging. Although PET plastics are a valuable resource in many aspects, the proliferation of plastic products in the last several decades have resulted in a negative environmental footprint. The long-term risk of released PET waste in the environment poses a serious threat to ecosystems, food safety, and even human health in modern society. Recycling is one of the most important actions currently available to reduce these impacts. Current clean-up strategies have attempted to alleviate the adverse impacts of PET pollution but are unable to compete with the increasing quantities of PET waste exposed to the environment. In this review paper, current PET recycling methods to improve life cycle and waste management are discussed, which can be further implemented to reduce plastics pollution and its impacts on health and environment. Compared with conventional mechanical and chemical recycling processes, the biotechnological recycling of PET involves enzymatic degradation of the waste PET and the followed bioconversion of degraded PET monomers into value-added chemicals. This approach creates a circular PET economy by recycling waste PET or upcycling it into more valuable products with minimal environmental footprint.
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Affiliation(s)
- Ya-Hue Valerie Soong
- Department of Chemical Engineering, University of Massachusetts Lowell, Lowell, MA 01854, USA;
| | - Margaret J. Sobkowicz
- Department of Plastics Engineering, University of Massachusetts Lowell, Lowell, MA 01854, USA;
| | - Dongming Xie
- Department of Chemical Engineering, University of Massachusetts Lowell, Lowell, MA 01854, USA;
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30
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Arnling Bååth J, Novy V, Carneiro LV, Guebitz GM, Olsson L, Westh P, Ribitsch D. Structure-function analysis of two closely related cutinases from Thermobifida cellulosilytica. Biotechnol Bioeng 2022; 119:470-481. [PMID: 34755331 PMCID: PMC9299132 DOI: 10.1002/bit.27984] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 10/13/2021] [Accepted: 10/29/2021] [Indexed: 12/12/2022]
Abstract
Cutinases can play a significant role in a biotechnology-based circular economy. However, relatively little is known about the structure-function relationship of these enzymes, knowledge that is vital to advance optimized, engineered enzyme candidates. Here, two almost identical cutinases from Thermobifida cellulosilytica DSM44535 (Thc_Cut1 and Thc_Cut2) with only 18 amino acids difference were used for a rigorous biochemical characterization of their ability to hydrolyze poly(ethylene terephthalate) (PET), PET-model substrates, and cutin-model substrates. Kinetic parameters were compared with detailed in silico docking studies of enzyme-ligand interactions. The two enzymes interacted with, and hydrolyzed PET differently, with Thc_Cut1 generating smaller PET-degradation products. Thc_Cut1 also showed higher catalytic efficiency on long-chain aliphatic substrates, an effect likely caused by small changes in the binding architecture. Thc_Cut2, in contrast, showed improved binding and catalytic efficiency when approaching the glass transition temperature of PET, an effect likely caused by longer amino acid residues in one area at the enzyme's surface. Finally, the position of the single residue Q93 close to the active site, rotated out in Thc_Cut2, influenced the ligand position of a trimeric PET-model substrate. In conclusion, we illustrate that even minor sequence differences in cutinases can affect their substrate binding, substrate specificity, and catalytic efficiency drastically.
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Affiliation(s)
- Jenny Arnling Bååth
- Department of Biotechnology and BiomedicineTechnical University of DenmarkLyngbyDenmark
| | - Vera Novy
- Dept. of Biology and Biological Engineering, Division of Industrial Biotechnology, Wallenberg Wood Science CenterChalmers University of TechnologyGothenburgSweden
| | - Leonor V. Carneiro
- Dept. of Biology and Biological Engineering, Division of Industrial Biotechnology, Wallenberg Wood Science CenterChalmers University of TechnologyGothenburgSweden
| | - Georg M. Guebitz
- Institute of Environmental BiotechnologyUniversity of Natural Resources and Life Sciences (BOKU)TullnAustria
| | - Lisbeth Olsson
- Dept. of Biology and Biological Engineering, Division of Industrial Biotechnology, Wallenberg Wood Science CenterChalmers University of TechnologyGothenburgSweden
| | - Peter Westh
- Department of Biotechnology and BiomedicineTechnical University of DenmarkLyngbyDenmark
| | - Doris Ribitsch
- Institute of Environmental BiotechnologyUniversity of Natural Resources and Life Sciences (BOKU)TullnAustria
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31
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Chattopadhyay I. Role of microbiome and biofilm in environmental plastic degradation. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2021.102263] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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32
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Meera SP, Bhattacharyya M, Nizam A, Kumar A. A review on microplastic pollution in the mangrove wetlands and microbial strategies for its remediation. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:4865-4879. [PMID: 34791631 DOI: 10.1007/s11356-021-17451-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 11/05/2021] [Indexed: 06/13/2023]
Abstract
Mangroves are one of the most productive ecosystems in the world harboring huge biological diversity. The prime ecological roles of mangroves are prevention of coastal erosion and shoreline protection. Mangroves face varying degrees of threats due to overexploitation, conversion of mangrove habitats for agriculture, settlement and industrial purposes, illegal encroachment, global warming, sea-level rise, El Nino, and pollution. Among them, microplastic (MP) pollution is a major concern threatening not only the mangroves per se but also the rich biodiversity that it shelters. In general, the microbial communities which are paramount to nutrient recycling and ecological dynamics undergo substantial changes upon MP exposure. If the MP pollution in the mangrove habitats continues unabated in the coming decades, there may be serious consequences on the already threatened mangrove ecosystems and the coastal communities. This review article attempts to consolidate MP pollution of mangrove wetlands, its impact on mangroves and associated microbiota, and the microbial solution for its remediation as a sustainable strategy.
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Affiliation(s)
- Suraj Prasannakumari Meera
- Department of Biotechnology and Microbiology, Dr. Janaki Ammal Campus, Kannur University, Palayad, 670661, Kerala, India
| | - Malini Bhattacharyya
- Department of Plant Science, Central University of Kerala, Kasaragod, 671316, Kerala, India
| | - Ashifa Nizam
- Department of Plant Science, Central University of Kerala, Kasaragod, 671316, Kerala, India
| | - Ajay Kumar
- Department of Plant Science, Central University of Kerala, Kasaragod, 671316, Kerala, India.
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33
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Vázquez-Alcántara L, Oliart-Ros RM, García-Bórquez A, Peña-Montes C. Expression of a Cutinase of Moniliophthora roreri with Polyester and PET-Plastic Residues Degradation Activity. Microbiol Spectr 2021; 9:e0097621. [PMID: 34730414 PMCID: PMC8567236 DOI: 10.1128/spectrum.00976-21] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Accepted: 09/10/2021] [Indexed: 11/20/2022] Open
Abstract
Cutinases are enzymes produced by phytopathogenic fungi like Moniliophthora roreri. The three genome-located cutinase genes of M. roreri were amplified from cDNA of fungi growing in different induction culture media for cutinase production. The mrcut1 gene was expressed in the presence of a cacao cuticle, while the mrcut2 and mrcut3 genes were expressed when an apple cuticle was used as the inducer. The sequences of all genes were obtained and analyzed by bioinformatics tools to determine the presence of signal peptides, introns, glycosylation, and regulatory sequences. Also, the theoretical molecular weight and pI were obtained and experimentally confirmed. Finally, cutinase 1 from M. roreri (MRCUT1) was selected for heterologous expression in Escherichia coli. Successful overexpression of MRCUT1 was observed with the highest enzyme activity of 34,036 U/mg under the assay conditions at 40°C and pH 8. Furthermore, the degradation of different synthetic polyesters was evaluated; after 21 days, 59% of polyethylene succinate (PES), 43% of polycaprolactone (PCL), and 31% of polyethylene terephthalate (PET) from plastic residues were degraded. IMPORTANCE Plastic pollution is exponentially increasing; even the G20 has recognized an urgent need to implement actions to reduce it. In recent years, searching for enzymes that can degrade plastics, especially those based on polyesters such as PET, has been increasing as they can be a green alternative to the actual plastic degradation process. A promising option in recent years refers to biological tools such as enzymes involved in stages of partial and even total degradation of some plastics. In this context, the MRCUT1 enzyme can degrade polyesters contained in plastic residues in a short time. Besides, there is limited knowledge about the biochemical properties of cutinases from M. roreri. Commonly, fungal enzymes are expressed as inclusion bodies in E. coli with reduced activity. Interestingly, the successful expression of one cutinase of M. roreri in E. coli with enhanced activity is described.
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Affiliation(s)
- Laura Vázquez-Alcántara
- Tecnológico Nacional de México/IT Veracruz, Unidad de Investigación y Desarrollo en Alimentos, Veracruz, México
| | - Rosa María Oliart-Ros
- Tecnológico Nacional de México/IT Veracruz, Unidad de Investigación y Desarrollo en Alimentos, Veracruz, México
| | - Arturo García-Bórquez
- Instituto Politécnico Nacional, Escuela Superior de Física y Matemáticas, UPALM, Mexico City, México
| | - Carolina Peña-Montes
- Tecnológico Nacional de México/IT Veracruz, Unidad de Investigación y Desarrollo en Alimentos, Veracruz, México
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34
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Ya H, Jiang B, Xing Y, Zhang T, Lv M, Wang X. Recent advances on ecological effects of microplastics on soil environment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 798:149338. [PMID: 34375233 DOI: 10.1016/j.scitotenv.2021.149338] [Citation(s) in RCA: 121] [Impact Index Per Article: 30.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2021] [Revised: 07/22/2021] [Accepted: 07/25/2021] [Indexed: 05/22/2023]
Abstract
The mass production and wide application of plastics and their derivatives have led to the release of a large number of discarded plastic products into the natural environment, where they continue to accumulate due to their low recycling rate and long durability. These large pieces of plastic will gradually break into microplastics (<5 mm), which are highly persistent organic pollutants and attract worldwide attention due to their small particle size and potential threats to the ecosystem. Compared with the aquatic system, terrestrial systems such as soils, as sinks for microplastics, are more susceptible to plastic pollution. In this article, we comprehensively summarized the occurrence and sources of microplastics in terrestrial soil, and reviewed the eco-toxicological effects of microplastics in soil ecosystems, in terms of physical and chemical properties of soil, soil nutrient cycling, soil flora and fauna. The influence of microplastics on soil microbial community, and particularly the microbial community on the surface of microplastics, were examined in detail. The compound effects of microplastics and other pollutants, e.g., heavy metals and antibiotics, were addressed. Future challenges of research on microplastics include development of new techniques and standardization for the extraction and qualitative and quantitative analysis of microplastics in soils, toxic effects of microplastics at microbial or even molecular levels, the contribution of microplastics to antibiotic resistance genes migration, and unraveling microorganisms for the degradation of microplastics. This work provides as a better understanding of the occurrence, distribution and potential ecological risks of microplastics in terrestrial soil ecosystems.
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Affiliation(s)
- Haobo Ya
- School of Energy and Environmental Engineering, University of Science & Technology Beijing, Beijing 100083, PR China; Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science & Technology Beijing, Beijing 100083, PR China
| | - Bo Jiang
- School of Energy and Environmental Engineering, University of Science & Technology Beijing, Beijing 100083, PR China; Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science & Technology Beijing, Beijing 100083, PR China; National Engineering Laboratory for Site Remediation Technologies, Beijing 100015, PR China.
| | - Yi Xing
- School of Energy and Environmental Engineering, University of Science & Technology Beijing, Beijing 100083, PR China; Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science & Technology Beijing, Beijing 100083, PR China
| | - Tian Zhang
- School of Energy and Environmental Engineering, University of Science & Technology Beijing, Beijing 100083, PR China; Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science & Technology Beijing, Beijing 100083, PR China
| | - Mingjie Lv
- School of Energy and Environmental Engineering, University of Science & Technology Beijing, Beijing 100083, PR China; Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science & Technology Beijing, Beijing 100083, PR China
| | - Xin Wang
- School of Energy and Environmental Engineering, University of Science & Technology Beijing, Beijing 100083, PR China; Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science & Technology Beijing, Beijing 100083, PR China
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Tamoor M, Samak NA, Jia Y, Mushtaq MU, Sher H, Bibi M, Xing J. Potential Use of Microbial Enzymes for the Conversion of Plastic Waste Into Value-Added Products: A Viable Solution. Front Microbiol 2021; 12:777727. [PMID: 34917057 PMCID: PMC8670383 DOI: 10.3389/fmicb.2021.777727] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 11/04/2021] [Indexed: 01/24/2023] Open
Abstract
The widespread use of commercial polymers composed of a mixture of polylactic acid and polyethene terephthalate (PLA-PET) in bottles and other packaging materials has caused a massive environmental crisis. The valorization of these contaminants via cost-effective technologies is urgently needed to achieve a circular economy. The enzymatic hydrolysis of PLA-PET contaminants plays a vital role in environmentally friendly strategies for plastic waste recycling and degradation. In this review, the potential roles of microbial enzymes for solving this critical problem are highlighted. Various enzymes involved in PLA-PET recycling and bioconversion, such as PETase and MHETase produced by Ideonella sakaiensis; esterases produced by Bacillus and Nocardia; lipases produced by Thermomyces lanuginosus, Candida antarctica, Triticum aestivum, and Burkholderia spp.; and leaf-branch compost cutinases are critically discussed. Strategies for the utilization of PLA-PET's carbon content as C1 building blocks were investigated for the production of new plastic monomers and different value-added products, such as cyclic acetals, 1,3-propanediol, and vanillin. The bioconversion of PET-PLA degradation monomers to polyhydroxyalkanoate biopolymers by Pseudomonas and Halomonas strains was addressed in detail. Different solutions to the production of biodegradable plastics from food waste, agricultural residues, and polyhydroxybutyrate (PHB)-accumulating bacteria were discussed. Fuel oil production via PLA-PET thermal pyrolysis and possible hybrid integration techniques for the incorporation of thermostable plastic degradation enzymes for the conversion into fuel oil is explained in detail.
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Affiliation(s)
- Muhammad Tamoor
- CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, China
- College of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, China
| | - Nadia A. Samak
- CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, China
- Biofilm Centre, Aquatic Microbiology Department, Faculty of Chemistry, University Duisburg-Essen, Essen, Germany
| | - Yunpu Jia
- CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, China
- College of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, China
| | - Muhammad Umar Mushtaq
- CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, China
- College of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, China
- Department of Chemical Engineering, Wah Engineering College, University of Wah, Wah Cantt, Pakistan
| | - Hassan Sher
- CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, China
- College of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, China
| | - Maryam Bibi
- Department of Chemical Engineering, Wah Engineering College, University of Wah, Wah Cantt, Pakistan
| | - Jianmin Xing
- CAS Key Laboratory of Green Process and Engineering, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences, Beijing, China
- College of Chemical Engineering, University of Chinese Academy of Sciences, Beijing, China
- Chemistry and Chemical Engineering Guangdong Laboratory, Shantou, China
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Novy V, Carneiro LV, Shin JH, Larsbrink J, Olsson L. Phylogenetic analysis and in-depth characterization of functionally and structurally diverse CE5 cutinases. J Biol Chem 2021; 297:101302. [PMID: 34653507 PMCID: PMC8577158 DOI: 10.1016/j.jbc.2021.101302] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 09/19/2021] [Accepted: 09/26/2021] [Indexed: 11/30/2022] Open
Abstract
Cutinases are esterases that release fatty acids from the apoplastic layer in plants. As they accept bulky and hydrophobic substrates, cutinases could be used in many applications, ranging from valorization of bark-rich side streams to plastic recycling. Advancement of these applications, however, requires deeper knowledge of cutinases' biodiversity and structure-function relationships. Here, we mined over 3000 members from carbohydrate esterase family 5 for putative cutinases and condensed it to 151 genes from known or putative lignocellulose-targeting organisms. The 151 genes were subjected to a phylogenetic analysis, which showed that cutinases with available crystal structures were phylogenetically closely related. We then selected nine phylogenic diverse cutinases for recombinant production and characterized their kinetic activity against para-nitrophenol substrates esterified with consecutively longer alkyl chains (pNP-C2 to C16). Each investigated cutinase had a unique activity fingerprint against the tested pNP substrates. The five enzymes with the highest activity on pNP-C12 and C16, indicative of activity on bulky hydrophobic compounds, were selected for in-depth kinetic and structure-function analysis. All five enzymes showed a decrease in kcat values with increasing substrate chain length, whereas KM values and binding energies (calculated from in silico docking analysis) improved. Two cutinases from Fusarium solani and Cryptococcus sp. exhibited outstandingly low KM values, resulting in high catalytic efficiencies toward pNP-C16. Docking analysis suggested that different clades of the phylogenetic tree may harbor enzymes with different modes of substrate interaction, involving a solvent-exposed catalytic triad, a lipase-like lid, or a clamshell-like active site possibly formed by flexible loops.
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Affiliation(s)
- Vera Novy
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden; Wallenberg Wood Science Center, Chalmers University of Technology, Gothenburg, Sweden
| | - Leonor Vieira Carneiro
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Jae Ho Shin
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden
| | - Johan Larsbrink
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden; Wallenberg Wood Science Center, Chalmers University of Technology, Gothenburg, Sweden
| | - Lisbeth Olsson
- Division of Industrial Biotechnology, Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden; Wallenberg Wood Science Center, Chalmers University of Technology, Gothenburg, Sweden.
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Magalhães RP, Cunha JM, Sousa SF. Perspectives on the Role of Enzymatic Biocatalysis for the Degradation of Plastic PET. Int J Mol Sci 2021; 22:11257. [PMID: 34681915 PMCID: PMC8540959 DOI: 10.3390/ijms222011257] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Revised: 10/13/2021] [Accepted: 10/16/2021] [Indexed: 12/25/2022] Open
Abstract
Plastics are highly durable and widely used materials. Current methodologies of plastic degradation, elimination, and recycling are flawed. In recent years, biodegradation (the usage of microorganisms for material recycling) has grown as a valid alternative to previously used methods. The evolution of bioengineering techniques and the discovery of novel microorganisms and enzymes with degradation ability have been key. One of the most produced plastics is PET, a long chain polymer of terephthalic acid (TPA) and ethylene glycol (EG) repeating monomers. Many enzymes with PET degradation activity have been discovered, characterized, and engineered in the last few years. However, classification and integrated knowledge of these enzymes are not trivial. Therefore, in this work we present a summary of currently known PET degrading enzymes, focusing on their structural and activity characteristics, and summarizing engineering efforts to improve activity. Although several high potential enzymes have been discovered, further efforts to improve activity and thermal stability are necessary.
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Affiliation(s)
- Rita P. Magalhães
- UCIBIO—Applied Molecular Biosciences Unit, BioSIM—Departamento de Biomedicina, Faculdade de Medicina, Universidade do Porto, 4200-319 Porto, Portugal; (R.P.M.); (J.M.C.)
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, Faculdade de Medicina, Universidade do Porto, 4200-319 Porto, Portugal
| | - Jorge M. Cunha
- UCIBIO—Applied Molecular Biosciences Unit, BioSIM—Departamento de Biomedicina, Faculdade de Medicina, Universidade do Porto, 4200-319 Porto, Portugal; (R.P.M.); (J.M.C.)
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, Faculdade de Medicina, Universidade do Porto, 4200-319 Porto, Portugal
| | - Sérgio F. Sousa
- UCIBIO—Applied Molecular Biosciences Unit, BioSIM—Departamento de Biomedicina, Faculdade de Medicina, Universidade do Porto, 4200-319 Porto, Portugal; (R.P.M.); (J.M.C.)
- Associate Laboratory i4HB—Institute for Health and Bioeconomy, Faculdade de Medicina, Universidade do Porto, 4200-319 Porto, Portugal
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Gao R, Pan H, Lian J. Recent advances in the discovery, characterization, and engineering of poly(ethylene terephthalate) (PET) hydrolases. Enzyme Microb Technol 2021; 150:109868. [PMID: 34489027 DOI: 10.1016/j.enzmictec.2021.109868] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2021] [Revised: 07/01/2021] [Accepted: 07/06/2021] [Indexed: 12/28/2022]
Abstract
Poly(ethylene terephthalate) (PET) is a class of polyester plastic composed of terephthalic acid (TPA) and ethylene glycol (EG). The accumulation of large amount of PET waste has resulted in severe environmental and health problems. Microbial polyester hydrolases with the ability to degrade PET provide an economy- and environment-friendly approach for the treatment of PET waste. In recent years, many PET hydrolases have been discovered and characterized from various microorganisms and engineered for better performance under practical application conditions. Here, recent progress in the discovery, characterization, and enzymatic mechanism elucidation of PET hydrolases is firstly reviewed. Then, structure-guided protein engineering of PET hydrolases with increased enzymatic activities, expanded substrate specificity, as well as improved protein stability is summarized. In addition, strategies for efficient expression of recombinant PET hydrolases, including secretory expression and cell-surface display, are briefly introduced. This review is concluded with future perspectives in biodegradation and subsequent biotransformation of PET wastes to produce value-added compounds.
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Affiliation(s)
- Rui Gao
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Haojie Pan
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Jiazhang Lian
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China; Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 310027, China.
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Sales JCS, Santos AG, de Castro AM, Coelho MAZ. A critical view on the technology readiness level (TRL) of microbial plastics biodegradation. World J Microbiol Biotechnol 2021; 37:116. [DOI: 10.1007/s11274-021-03089-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 06/07/2021] [Indexed: 12/26/2022]
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Amobonye A, Bhagwat P, Singh S, Pillai S. Plastic biodegradation: Frontline microbes and their enzymes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 759:143536. [PMID: 33190901 DOI: 10.1016/j.scitotenv.2020.143536] [Citation(s) in RCA: 211] [Impact Index Per Article: 52.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 10/16/2020] [Accepted: 10/17/2020] [Indexed: 05/07/2023]
Abstract
Plastic polymers with different properties have been developed in the last 150 years to replace materials such as wood, glass and metals across various applications. Nevertheless, the distinct properties which make plastic desirable for our daily use also threaten our planet's sustainability. Plastics are resilient, non-reactive and most importantly, non-biodegradable. Hence, there has been an exponential increase in plastic waste generation, which has since been recognised as a global environmental threat. Plastic wastes have adversely affected life on earth, primarily through their undesirable accumulation in landfills, leaching into the soil, increased greenhouse gas emission, etc. Even more damaging is their impact on the aquatic ecosystems as they cause entanglement, ingestion and intestinal blockage in aquatic animals. Furthermore, plastics, especially in the microplastic form, have also been found to interfere with chemical interaction between marine organisms, to cause intrinsic toxicity by leaching, and by absorbing persistent organic contaminants as well as pathogens. The current methods for eliminating these wastes (incineration, landfilling, and recycling) come at massive costs, are unsustainable, and put more burden on our environment. Thus, recent focus has been placed more on the potential of biological systems to degrade synthetic plastics. In this regard, some insects, bacteria and fungi have been shown to ingest these polymers and convert them into environmentally friendly carbon compounds. Hence, in the light of recent literature, this review emphasises the multifaceted roles played by microorganisms in this process. The current understanding of the roles played by actinomycetes, algae, bacteria, fungi and their enzymes in enhancing the degradation of synthetic plastics are reviewed, with special focus on their modes of action and probable enzymatic mechanisms. Besides, key areas for further exploration, such as the manipulation of microorganisms through molecular cloning, modification of enzymatic characteristics and metabolic pathway design, are also highlighted.
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Affiliation(s)
- Ayodeji Amobonye
- Department of Biotechnology and Food Technology, Faculty of Applied Sciences, Durban University of Technology, P.O. Box 1334, Durban 4000, South Africa.
| | - Prashant Bhagwat
- Department of Biotechnology and Food Technology, Faculty of Applied Sciences, Durban University of Technology, P.O. Box 1334, Durban 4000, South Africa.
| | - Suren Singh
- Department of Biotechnology and Food Technology, Faculty of Applied Sciences, Durban University of Technology, P.O. Box 1334, Durban 4000, South Africa.
| | - Santhosh Pillai
- Department of Biotechnology and Food Technology, Faculty of Applied Sciences, Durban University of Technology, P.O. Box 1334, Durban 4000, South Africa.
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Norwegian Soils and Waters Contain Mesophilic, Plastic-Degrading Bacteria. Microorganisms 2021; 9:microorganisms9010094. [PMID: 33401570 PMCID: PMC7823905 DOI: 10.3390/microorganisms9010094] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 12/17/2020] [Accepted: 12/17/2020] [Indexed: 11/16/2022] Open
Abstract
Plastic pollution has become one of the most critical environmental issues, as rapidly increasing production, compounded by persistence of plastic wastes in the environment, are outpacing efforts to keep ecosystems plastic-free. A switch to plastics more amenable to microbial attack is one of several possible responses. Against this background, the current study describes the isolation, enumeration and polyphasic characterization of plastic-degrading bacteria present in Norwegian terrestrial and aquatic habits. It shows that these bacteria are present in relatively high numbers, and that plastic-degrading capabilities are found in several taxa, most especially Streptomyces. Some isolates wereable to degrade several plastics. Notably, a Rhodococcus sp. and a Streptomyces sp. degraded, respectively, four and six of the eight plastics investigated and a number of other polymers relevant for plastic blends. The paper also has a methodological aspect, presenting various approaches for assaying plastic-degrading properties and a PCR/sequencing-based approach for the identification of potential polyethylene terephthalate-degrading genes. A candidate gene was detected in several Streptomyces isolates. The study shows that Norwegian environments are a rich source of bacteria with the ability to degrade bioplastics possibly representing a natural remediation capacity, as well as a potential source of useful enzymes.
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