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Xu E, Vanegas M, Mireles M, Dementyev A, McCann A, Yücel M, Carp SA, Fang Q. Flexible circuit-based spatially aware modular optical brain imaging system for high-density measurements in natural settings. NEUROPHOTONICS 2024; 11:035002. [PMID: 38975286 PMCID: PMC11224775 DOI: 10.1117/1.nph.11.3.035002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 05/31/2024] [Accepted: 06/07/2024] [Indexed: 07/09/2024]
Abstract
Significance Functional near-infrared spectroscopy (fNIRS) presents an opportunity to study human brains in everyday activities and environments. However, achieving robust measurements under such dynamic conditions remains a significant challenge. Aim The modular optical brain imaging (MOBI) system is designed to enhance optode-to-scalp coupling and provide a real-time probe three-dimensional (3D) shape estimation to improve the use of fNIRS in everyday conditions. Approach The MOBI system utilizes a bendable and lightweight modular circuit-board design to enhance probe conformity to head surfaces and comfort for long-term wearability. Combined with automatic module connection recognition, the built-in orientation sensors on each module can be used to estimate optode 3D positions in real time to enable advanced tomographic data analysis and motion tracking. Results Optical characterization of the MOBI detector reports a noise equivalence power of 8.9 and 7.3 pW / Hz at 735 and 850 nm, respectively, with a dynamic range of 88 dB. The 3D optode shape acquisition yields an average error of 4.2 mm across 25 optodes in a phantom test compared with positions acquired from a digitizer. Results for initial in vivo validations, including a cuff occlusion and a finger-tapping test, are also provided. Conclusions To the best of our knowledge, the MOBI system is the first modular fNIRS system featuring fully flexible circuit boards. The self-organizing module sensor network and automatic 3D optode position acquisition, combined with lightweight modules ( 18 g / module ) and ergonomic designs, would greatly aid emerging explorations of brain function in naturalistic settings.
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Affiliation(s)
- Edward Xu
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
| | - Morris Vanegas
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
| | - Miguel Mireles
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
| | - Artem Dementyev
- Massachusetts Institute of Technology, Media Lab, Cambridge, Massachusetts, United States
| | - Ashlyn McCann
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
| | - Meryem Yücel
- Boston University, Neurophotonics Center, Boston, Massachusetts, United States
| | - Stefan A. Carp
- Massachusetts General Hospital, Athinoula A. Martinos Center for Biomedical Imaging, Boston, Massachusetts, United States
| | - Qianqian Fang
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
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Xu E, Vanegas M, Mireles M, Dementyev A, Yucel M, Carp S, Fang Q. Flexible-circuit-based 3-D aware modular optical brain imaging system for high-density measurements in natural settings. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.03.01.24302838. [PMID: 38496598 PMCID: PMC10942511 DOI: 10.1101/2024.03.01.24302838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/19/2024]
Abstract
Significance Functional near-infrared spectroscopy (fNIRS) presents an opportunity to study human brains in everyday activities and environments. However, achieving robust measurements under such dynamic condition remains a significant challenge. Aim The modular optical brain imaging (MOBI) system is designed to enhance optode-to-scalp coupling and provide real-time probe 3-D shape estimation to improve the use of fNIRS in everyday conditions. Approach The MOBI system utilizes a bendable and lightweight modular circuit-board design to enhance probe conformity to head surfaces and comfort for long-term wearability. Combined with automatic module connection recognition, the built-in orientation sensors on each module can be used to estimate optode 3-D positions in real-time to enable advanced tomographic data analysis and motion tracking. Results Optical characterization of the MOBI detector reports a noise equivalence power (NEP) of 8.9 and 7.3 pW / H z at 735 nm and 850 nm, respectively, with a dynamic range of 88 dB. The 3-D optode shape acquisition yields an average error of 4.2 mm across 25 optodes in a phantom test compared to positions acquired from a digitizer. Results for initial in vivo validations, including a cuff occlusion and a finger-tapping test, are also provided. Conclusions To the best of our knowledge, the MOBI system is the first modular fNIRS system featuring fully flexible circuit boards. The self-organizing module sensor network and automatic 3-D optode position acquisition, combined with lightweight modules (18 g/module) and ergonomic designs, would greatly aid emerging explorations of brain function in naturalistic settings.
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Affiliation(s)
- Edward Xu
- Northeastern University, Department of Bioengineering, 360 Huntington Avenue, Boston, USA, 02115
| | - Morris Vanegas
- Northeastern University, Department of Bioengineering, 360 Huntington Avenue, Boston, USA, 02115
| | - Miguel Mireles
- Northeastern University, Department of Bioengineering, 360 Huntington Avenue, Boston, USA, 02115
| | - Artem Dementyev
- Massachusetts Institute of Technology, Media Lab, 77 Massachusetts Avenue, Cambridge, USA, 02139
| | - Meryem Yucel
- Boston University, Neurophotonics Center, 233 Bay State Road, Boston, USA, 02215
| | - Stefan Carp
- Massachusetts General Hospital, Athinoula A. Martinos Center for Biomedical Imaging, 149 13th St, Boston, USA, 02129
| | - Qianqian Fang
- Northeastern University, Department of Bioengineering, 360 Huntington Avenue, Boston, USA, 02115
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Kolka Z, Barcik P, Biolkova V. Statistical Analysis of Silicon Photomultiplier Output Signals. SENSORS (BASEL, SWITZERLAND) 2022; 22:9134. [PMID: 36501835 PMCID: PMC9737098 DOI: 10.3390/s22239134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 11/18/2022] [Accepted: 11/22/2022] [Indexed: 06/17/2023]
Abstract
Silicon photomultipliers are relatively new devices designed as a matrix of single-photon avalanche detectors, which have become popular for their miniature dimensions and low operating voltage. Their superior sensitivity allows detecting low-photon-count optical pulses, e.g., in ranging and LIDAR applications. The output signal of the photomultiplier is a non-stationary stochastic process, from which a weak periodic pulse can be extracted by means of statistical processing. Using the double-exponential approximation of output avalanche pulses the paper presents a simple analytical solution to the mean and variance of the stochastic process. It is shown that even for an ideal square optical pulse the rising edge of the statistically detected signal is longer than the edge of individual avalanche pulses. The knowledge of the detected waveform can be used to design an optimum laser pulse waveform or algorithms for estimating the time of arrival. The experimental section demonstrates the proposed procedure.
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Ayaz H, Baker WB, Blaney G, Boas DA, Bortfeld H, Brady K, Brake J, Brigadoi S, Buckley EM, Carp SA, Cooper RJ, Cowdrick KR, Culver JP, Dan I, Dehghani H, Devor A, Durduran T, Eggebrecht AT, Emberson LL, Fang Q, Fantini S, Franceschini MA, Fischer JB, Gervain J, Hirsch J, Hong KS, Horstmeyer R, Kainerstorfer JM, Ko TS, Licht DJ, Liebert A, Luke R, Lynch JM, Mesquida J, Mesquita RC, Naseer N, Novi SL, Orihuela-Espina F, O’Sullivan TD, Peterka DS, Pifferi A, Pollonini L, Sassaroli A, Sato JR, Scholkmann F, Spinelli L, Srinivasan VJ, St. Lawrence K, Tachtsidis I, Tong Y, Torricelli A, Urner T, Wabnitz H, Wolf M, Wolf U, Xu S, Yang C, Yodh AG, Yücel MA, Zhou W. Optical imaging and spectroscopy for the study of the human brain: status report. NEUROPHOTONICS 2022; 9:S24001. [PMID: 36052058 PMCID: PMC9424749 DOI: 10.1117/1.nph.9.s2.s24001] [Citation(s) in RCA: 55] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
This report is the second part of a comprehensive two-part series aimed at reviewing an extensive and diverse toolkit of novel methods to explore brain health and function. While the first report focused on neurophotonic tools mostly applicable to animal studies, here, we highlight optical spectroscopy and imaging methods relevant to noninvasive human brain studies. We outline current state-of-the-art technologies and software advances, explore the most recent impact of these technologies on neuroscience and clinical applications, identify the areas where innovation is needed, and provide an outlook for the future directions.
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Affiliation(s)
- Hasan Ayaz
- Drexel University, School of Biomedical Engineering, Science, and Health Systems, Philadelphia, Pennsylvania, United States
- Drexel University, College of Arts and Sciences, Department of Psychological and Brain Sciences, Philadelphia, Pennsylvania, United States
| | - Wesley B. Baker
- Children’s Hospital of Philadelphia, Division of Neurology, Philadelphia, Pennsylvania, United States
- Perelman School of Medicine at the University of Pennsylvania, Philadelphia, Pennsylvania, United States
| | - Giles Blaney
- Tufts University, Department of Biomedical Engineering, Medford, Massachusetts, United States
| | - David A. Boas
- Boston University Neurophotonics Center, Boston, Massachusetts, United States
- Boston University, College of Engineering, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Heather Bortfeld
- University of California, Merced, Departments of Psychological Sciences and Cognitive and Information Sciences, Merced, California, United States
| | - Kenneth Brady
- Lurie Children’s Hospital, Northwestern University Feinberg School of Medicine, Department of Anesthesiology, Chicago, Illinois, United States
| | - Joshua Brake
- Harvey Mudd College, Department of Engineering, Claremont, California, United States
| | - Sabrina Brigadoi
- University of Padua, Department of Developmental and Social Psychology, Padua, Italy
| | - Erin M. Buckley
- Georgia Institute of Technology, Wallace H. Coulter Department of Biomedical Engineering, Atlanta, Georgia, United States
- Emory University School of Medicine, Department of Pediatrics, Atlanta, Georgia, United States
| | - Stefan A. Carp
- Massachusetts General Hospital, Harvard Medical School, Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, United States
| | - Robert J. Cooper
- University College London, Department of Medical Physics and Bioengineering, DOT-HUB, London, United Kingdom
| | - Kyle R. Cowdrick
- Georgia Institute of Technology, Wallace H. Coulter Department of Biomedical Engineering, Atlanta, Georgia, United States
| | - Joseph P. Culver
- Washington University School of Medicine, Department of Radiology, St. Louis, Missouri, United States
| | - Ippeita Dan
- Chuo University, Faculty of Science and Engineering, Tokyo, Japan
| | - Hamid Dehghani
- University of Birmingham, School of Computer Science, Birmingham, United Kingdom
| | - Anna Devor
- Boston University, College of Engineering, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Turgut Durduran
- ICFO – The Institute of Photonic Sciences, The Barcelona Institute of Science and Technology, Castelldefels, Barcelona, Spain
- Institució Catalana de Recerca I Estudis Avançats (ICREA), Barcelona, Spain
| | - Adam T. Eggebrecht
- Washington University in St. Louis, Mallinckrodt Institute of Radiology, St. Louis, Missouri, United States
| | - Lauren L. Emberson
- University of British Columbia, Department of Psychology, Vancouver, British Columbia, Canada
| | - Qianqian Fang
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
| | - Sergio Fantini
- Tufts University, Department of Biomedical Engineering, Medford, Massachusetts, United States
| | - Maria Angela Franceschini
- Massachusetts General Hospital, Harvard Medical School, Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, Massachusetts, United States
| | - Jonas B. Fischer
- ICFO – The Institute of Photonic Sciences, The Barcelona Institute of Science and Technology, Castelldefels, Barcelona, Spain
| | - Judit Gervain
- University of Padua, Department of Developmental and Social Psychology, Padua, Italy
- Université Paris Cité, CNRS, Integrative Neuroscience and Cognition Center, Paris, France
| | - Joy Hirsch
- Yale School of Medicine, Department of Psychiatry, Neuroscience, and Comparative Medicine, New Haven, Connecticut, United States
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Keum-Shik Hong
- Pusan National University, School of Mechanical Engineering, Busan, Republic of Korea
- Qingdao University, School of Automation, Institute for Future, Qingdao, China
| | - Roarke Horstmeyer
- Duke University, Department of Biomedical Engineering, Durham, North Carolina, United States
- Duke University, Department of Electrical and Computer Engineering, Durham, North Carolina, United States
- Duke University, Department of Physics, Durham, North Carolina, United States
| | - Jana M. Kainerstorfer
- Carnegie Mellon University, Department of Biomedical Engineering, Pittsburgh, Pennsylvania, United States
- Carnegie Mellon University, Neuroscience Institute, Pittsburgh, Pennsylvania, United States
| | - Tiffany S. Ko
- Children’s Hospital of Philadelphia, Division of Cardiothoracic Anesthesiology, Philadelphia, Pennsylvania, United States
| | - Daniel J. Licht
- Children’s Hospital of Philadelphia, Division of Neurology, Philadelphia, Pennsylvania, United States
| | - Adam Liebert
- Polish Academy of Sciences, Nalecz Institute of Biocybernetics and Biomedical Engineering, Warsaw, Poland
| | - Robert Luke
- Macquarie University, Department of Linguistics, Sydney, New South Wales, Australia
- Macquarie University Hearing, Australia Hearing Hub, Sydney, New South Wales, Australia
| | - Jennifer M. Lynch
- Children’s Hospital of Philadelphia, Division of Cardiothoracic Anesthesiology, Philadelphia, Pennsylvania, United States
| | - Jaume Mesquida
- Parc Taulí Hospital Universitari, Critical Care Department, Sabadell, Spain
| | - Rickson C. Mesquita
- University of Campinas, Institute of Physics, Campinas, São Paulo, Brazil
- Brazilian Institute of Neuroscience and Neurotechnology, Campinas, São Paulo, Brazil
| | - Noman Naseer
- Air University, Department of Mechatronics and Biomedical Engineering, Islamabad, Pakistan
| | - Sergio L. Novi
- University of Campinas, Institute of Physics, Campinas, São Paulo, Brazil
- Western University, Department of Physiology and Pharmacology, London, Ontario, Canada
| | | | - Thomas D. O’Sullivan
- University of Notre Dame, Department of Electrical Engineering, Notre Dame, Indiana, United States
| | - Darcy S. Peterka
- Columbia University, Zuckerman Mind Brain Behaviour Institute, New York, United States
| | | | - Luca Pollonini
- University of Houston, Department of Engineering Technology, Houston, Texas, United States
| | - Angelo Sassaroli
- Tufts University, Department of Biomedical Engineering, Medford, Massachusetts, United States
| | - João Ricardo Sato
- Federal University of ABC, Center of Mathematics, Computing and Cognition, São Bernardo do Campo, São Paulo, Brazil
| | - Felix Scholkmann
- University of Bern, Institute of Complementary and Integrative Medicine, Bern, Switzerland
- University of Zurich, University Hospital Zurich, Department of Neonatology, Biomedical Optics Research Laboratory, Zürich, Switzerland
| | - Lorenzo Spinelli
- National Research Council (CNR), IFN – Institute for Photonics and Nanotechnologies, Milan, Italy
| | - Vivek J. Srinivasan
- University of California Davis, Department of Biomedical Engineering, Davis, California, United States
- NYU Langone Health, Department of Ophthalmology, New York, New York, United States
- NYU Langone Health, Department of Radiology, New York, New York, United States
| | - Keith St. Lawrence
- Lawson Health Research Institute, Imaging Program, London, Ontario, Canada
- Western University, Department of Medical Biophysics, London, Ontario, Canada
| | - Ilias Tachtsidis
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Yunjie Tong
- Purdue University, Weldon School of Biomedical Engineering, West Lafayette, Indiana, United States
| | - Alessandro Torricelli
- Politecnico di Milano, Dipartimento di Fisica, Milan, Italy
- National Research Council (CNR), IFN – Institute for Photonics and Nanotechnologies, Milan, Italy
| | - Tara Urner
- Georgia Institute of Technology, Wallace H. Coulter Department of Biomedical Engineering, Atlanta, Georgia, United States
| | - Heidrun Wabnitz
- Physikalisch-Technische Bundesanstalt (PTB), Berlin, Germany
| | - Martin Wolf
- University of Zurich, University Hospital Zurich, Department of Neonatology, Biomedical Optics Research Laboratory, Zürich, Switzerland
| | - Ursula Wolf
- University of Bern, Institute of Complementary and Integrative Medicine, Bern, Switzerland
| | - Shiqi Xu
- Duke University, Department of Biomedical Engineering, Durham, North Carolina, United States
| | - Changhuei Yang
- California Institute of Technology, Department of Electrical Engineering, Pasadena, California, United States
| | - Arjun G. Yodh
- University of Pennsylvania, Department of Physics and Astronomy, Philadelphia, Pennsylvania, United States
| | - Meryem A. Yücel
- Boston University Neurophotonics Center, Boston, Massachusetts, United States
- Boston University, College of Engineering, Department of Biomedical Engineering, Boston, Massachusetts, United States
| | - Wenjun Zhou
- University of California Davis, Department of Biomedical Engineering, Davis, California, United States
- China Jiliang University, College of Optical and Electronic Technology, Hangzhou, Zhejiang, China
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Development of a miniaturized and modular probe for fNIRS instrument. Lasers Med Sci 2022; 37:2269-2277. [PMID: 35028765 DOI: 10.1007/s10103-021-03493-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Accepted: 11/29/2021] [Indexed: 10/19/2022]
Abstract
Functional near-infrared spectroscopy (fNIRS) is a non-invasive and promising method for continuously monitoring hemodynamic and metabolic changes in tissues. However, the existing fNIRS equipment uses optical fiber, which is bulky, expensive, and time-consuming. We present a miniaturized, modular, novel silicon photomultiplier (SiPM) detector and develop a fNIRS instrument aimed at investigating the cerebral hemodynamic response for patients with epilepsy. Light emitting probe is a circle with a diameter of 5 mm. Independent and modular light source and detector are more flexible in placement. The system can be expanded to high-density measurement with 16 light sources, 16 detectors, and 52 channels. The sampling rate of each channel is 25 Hz. Instrument performance was evaluated using brain tissue phantom and in vivo experiments. High signal-to-noise ratio (60 dB) in source detector separation (SDS) of 30 mm, good stability (0.1%), noise equivalent power (0.89 pW), and system drift (0.56%) were achieved in the phantom experiment. Forearm blood-flow occlusion experiments were performed on the forearm of three healthy volunteers to demonstrate the ability to track rapid hemodynamic changes. Breath holding experiments on the forehead of healthy volunteers demonstrated the system can well detect brain function activity. The computer software was developed to display the original light signal intensity and the concentration changes of oxygenated hemoglobin (HbO2) and deoxygenated hemoglobin (HbR) in real time. This system paves the way for our further diagnosis of epilepsy.
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Wyser DG, Kanzler CM, Salzmann L, Lambercy O, Wolf M, Scholkmann F, Gassert R. Characterizing reproducibility of cerebral hemodynamic responses when applying short-channel regression in functional near-infrared spectroscopy. NEUROPHOTONICS 2022; 9:015004. [PMID: 35265732 PMCID: PMC8901194 DOI: 10.1117/1.nph.9.1.015004] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Accepted: 02/11/2022] [Indexed: 05/06/2023]
Abstract
Significance: Functional near-infrared spectroscopy (fNIRS) enables the measurement of brain activity noninvasively. Optical neuroimaging with fNIRS has been shown to be reproducible on the group level and hence is an excellent research tool, but the reproducibility on the single-subject level is still insufficient, challenging the use for clinical applications. Aim: We investigated the effect of short-channel regression (SCR) as an approach to obtain fNIRS measurements with higher reproducibility on a single-subject level. SCR simultaneously considers contributions from long- and short-separation channels and removes confounding physiological changes through the regression of the short-separation channel information. Approach: We performed a test-retest study with a hand grasping task in 15 healthy subjects using a wearable fNIRS device, optoHIVE. Relevant brain regions were localized with transcranial magnetic stimulation to ensure correct placement of the optodes. Reproducibility was assessed by intraclass correlation, correlation analysis, mixed effects modeling, and classification accuracy of the hand grasping task. Further, we characterized the influence of SCR on reproducibility. Results: We found a high reproducibility of fNIRS measurements on a single-subject level (ICC single = 0.81 and correlation r = 0.81 ). SCR increased the reproducibility from 0.64 to 0.81 (ICC single ) but did not affect classification (85% overall accuracy). Significant intersubject variability in the reproducibility was observed and was explained by Mayer wave oscillations and low raw signal strength. The raw signal-to-noise ratio (threshold at 40 dB) allowed for distinguishing between persons with weak and strong activations. Conclusions: We report, for the first time, that fNIRS measurements are reproducible on a single-subject level using our optoHIVE fNIRS system and that SCR improves reproducibility. In addition, we give a benchmark to easily assess the ability of a subject to elicit sufficiently strong hemodynamic responses. With these insights, we pave the way for the reliable use of fNIRS neuroimaging in single subjects for neuroscientific research and clinical applications.
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Affiliation(s)
- Dominik G. Wyser
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
- University Hospital Zurich, University of Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
| | - Christoph M. Kanzler
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
| | - Lena Salzmann
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
| | - Olivier Lambercy
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
| | - Martin Wolf
- University Hospital Zurich, University of Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
| | - Felix Scholkmann
- University Hospital Zurich, University of Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
- University of Bern, Institute of Complementary and Integrative Medicine, Bern, Switzerland
| | - Roger Gassert
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
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Vanegas M, Mireles M, Fang Q. MOCA: a systematic toolbox for designing and assessing modular functional near-infrared brain imaging probes. NEUROPHOTONICS 2022; 9:017801. [PMID: 36278785 PMCID: PMC8823693 DOI: 10.1117/1.nph.9.1.017801] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Accepted: 01/11/2022] [Indexed: 05/20/2023]
Abstract
Significance The expansion of functional near-infrared spectroscopy (fNIRS) systems toward broader utilities has led to the emergence of modular fNIRS systems composed of repeating optical source/detector modules. Compared to conventional fNIRS systems, modular fNIRS systems are more compact and flexible, making wearable and long-term monitoring possible. However, the large number of design parameters makes understanding their impact on a probe's performance a daunting task. Aim We aim to create a systematic software platform to facilitate the design, characterization, and comparison of modular fNIRS probes. Approach Our software-modular optode configuration analyzer (MOCA)-implements semi-automatic algorithms that assist in tessellating user-specified regions-of-interest, in interconnecting modules of various shapes, and in quantitatively comparing probe performance using metrics, such as spatial channel distributions and average brain sensitivity of the resulting probes. There is also support for limited parameter sweeping capabilities. Results Through several examples, we show that users can use MOCA to design and optimize modular fNIRS probes, study trade-offs between several module shapes, improve brain sensitivity in probes via module re-orientation, and enhance probe performance via adjusting module spatial layouts. Conclusion Despite its simplicity, our modular probe design platform offers a framework to describe and quantitatively assess probes made by modules, opening a new door for the growing fNIRS user community to approach the challenging problem of module- and probe-parameter selection and fine-tuning.
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Affiliation(s)
- Morris Vanegas
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
| | - Miguel Mireles
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
| | - Qianqian Fang
- Northeastern University, Department of Bioengineering, Boston, Massachusetts, United States
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von Lühmann A, Zheng Y, Ortega-Martinez A, Kiran S, Somers DC, Cronin-Golomb A, Awad LN, Ellis TD, Boas DA, Yücel MA. Towards Neuroscience of the Everyday World (NEW) using functional Near-Infrared Spectroscopy. CURRENT OPINION IN BIOMEDICAL ENGINEERING 2021; 18:100272. [PMID: 33709044 PMCID: PMC7943029 DOI: 10.1016/j.cobme.2021.100272] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Functional Near-Infrared Spectroscopy (fNIRS) assesses human brain activity by noninvasively measuring changes of cerebral hemoglobin concentrations caused by modulation of neuronal activity. Recent progress in signal processing and advances in system design, such as miniaturization, wearability and system sensitivity, have strengthened fNIRS as a viable and cost-effective complement to functional Magnetic Resonance Imaging (fMRI), expanding the repertoire of experimental studies that can be performed by the neuroscience community. The availability of fNIRS and Electroencephalography (EEG) for routine, increasingly unconstrained, and mobile brain imaging is leading towards a new domain that we term "Neuroscience of the Everyday World" (NEW). In this light, we review recent advances in hardware, study design and signal processing, and discuss challenges and future directions towards achieving NEW.
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Affiliation(s)
- Alexander von Lühmann
- Neurophotonics Center, Biomedical Engineering, Boston University, Boston, MA 02215, USA
- NIRx Medical Technologies, Berlin 13355, Germany
| | - Yilei Zheng
- Neurophotonics Center, Biomedical Engineering, Boston University, Boston, MA 02215, USA
- State Key Laboratory of Virtual Reality Technology and Systems, Beihang University, Beijing 100191, China
| | | | - Swathi Kiran
- Department of Speech, Language, and Hearing, Boston University, Boston, MA 02215, USA
| | - David C. Somers
- Department of Psychological and Brain Sciences, Boston University, Boston, MA 02215, USA
| | - Alice Cronin-Golomb
- Department of Psychological and Brain Sciences, Boston University, Boston, MA 02215, USA
| | - Louis N. Awad
- College of Health and Rehabilitation Sciences, Sargent College, Boston University, Boston, MA 02215, USA
| | - Terry D. Ellis
- College of Health and Rehabilitation Sciences, Sargent College, Boston University, Boston, MA 02215, USA
| | - David A. Boas
- Neurophotonics Center, Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Meryem A. Yücel
- Neurophotonics Center, Biomedical Engineering, Boston University, Boston, MA 02215, USA
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Experimental Study on Km-Range Long-Distance Measurement Using Silicon Photomultiplier Sensor with Low Peak Power Laser Pulse. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11010403] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Silicon photomultipliers (SiPM) have drawn considerable attention due to their superior sensitivity with a multi-pixel matrix structure. SiPM can be the choice of a detector for time of flight measurement which is one of the most promising applications in the field of light detection and ranging (LiDAR). In this work, we take advantage of SiPM and attempt to measure longer distances with a low peak power semiconductor laser under outdoor sunny and windy conditions. We achieved a long detection range of a few kilometers by using SiPM and a laser with a pulse energy of 9 µj at 0.905 µm and 3 dB enhancement in signal to noise ratio (SNR) by the implemented signal extraction algorithm. From the simulation performed, the minimum SNR value and detection probability were also determined for the outdoor field tests.
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Kitsmiller VJ, Campbell C, O’Sullivan TD. Optimizing sensitivity and dynamic range of silicon photomultipliers for frequency-domain near infrared spectroscopy. BIOMEDICAL OPTICS EXPRESS 2020; 11:5373-5387. [PMID: 33014621 PMCID: PMC7510869 DOI: 10.1364/boe.401439] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 08/20/2020] [Accepted: 08/26/2020] [Indexed: 05/27/2023]
Abstract
Diffuse optical imaging and tomography based upon frequency-domain near-infrared spectroscopy (fdNIRS) is used to noninvasively measure tissue structure and function through quantitative absolute measurements of tissue optical absorption and scattering. Here we describe how utilizing a silicon photomultiplier (SiPM) detector for fdNIRS improves performance. We discuss the operation of SiPMs, how they differ from other fdNIRS photodetectors, and show theoretically that SiPMs offer similar sensitivity to photomultiplier tube (PMT) detectors while having a higher dynamic range and lower cost, size, and operating voltage. With respect to avalanche photodiode (APD) detectors, theoretical and experimental data shows drastically increased signal to noise ratio performance, up to 25dB on human breast, head, and muscle tissue. Finally, we extend the dynamic range (∼10dB) of the SiPM through a nonlinear calibration technique which reduced absorption error by a mean 16 percentage points.
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11
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Gundacker S, Heering A. The silicon photomultiplier: fundamentals and applications of a modern solid-state photon detector. ACTA ACUST UNITED AC 2020; 65:17TR01. [DOI: 10.1088/1361-6560/ab7b2d] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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12
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Wyser D, Mattille M, Wolf M, Lambercy O, Scholkmann F, Gassert R. Short-channel regression in functional near-infrared spectroscopy is more effective when considering heterogeneous scalp hemodynamics. NEUROPHOTONICS 2020; 7:035011. [PMID: 33029548 PMCID: PMC7523733 DOI: 10.1117/1.nph.7.3.035011] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 09/04/2020] [Indexed: 05/20/2023]
Abstract
Significance: The reliability of functional near-infrared spectroscopy (fNIRS) measurements is reduced by systemic physiology. Short-channel regression algorithms aim at removing systemic "noise" by subtracting the signal measured at a short source-detector separation (mainly scalp hemodynamics) from the one of a long separation (brain and scalp hemodynamics). In literature, incongruent approaches on the selection of the optimal regressor signal are reported based on different assumptions on scalp hemodynamics properties. Aim: We investigated the spatial and temporal distribution of scalp hemodynamics over the sensorimotor cortex and evaluated its influence on the effectiveness of short-channel regressions. Approach: We performed hand-grasping and resting-state experiments with five subjects, measuring with 16 optodes over sensorimotor areas, including eight 8-mm channels. We performed detailed correlation analyses of scalp hemodynamics and evaluated 180 hand-grasping and 270 simulated (overlaid on resting-state measurements) trials. Five short-channel regressor combinations were implemented with general linear models. Three were chosen according to literature, and two were proposed based on additional physiological assumptions [considering multiple short channels and their Mayer wave (MW) oscillations]. Results: We found heterogeneous hemodynamics in the scalp, coming on top of a global close-to-homogeneous behavior (correlation 0.69 to 0.92). The results further demonstrate that short-channel regression always improves brain activity estimates but that better results are obtained when heterogeneity is assumed. In particular, we highlight that short-channel regression is more effective when combining multiple scalp regressors and when MWs are additionally included. Conclusion: We shed light on the selection of optimal regressor signals for improving the removal of systemic physiological artifacts in fNIRS. We conclude that short-channel regression is most effective when assuming heterogeneous hemodynamics, in particular when combining spatial- and frequency-specific information. A better understanding of scalp hemodynamics and more effective short-channel regression will promote more accurate assessments of functional brain activity in clinical and research settings.
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Affiliation(s)
- Dominik Wyser
- ETH Zurich, Department of Health Sciences and Technology, Rehabilitation Engineering Laboratory, Zurich, Switzerland
- University Hospital Zurich, University of Zurich, Department of Neonatology, Biomedical Optics Research Laboratory, Zurich, Switzerland
| | - Michelle Mattille
- ETH Zurich, Department of Health Sciences and Technology, Rehabilitation Engineering Laboratory, Zurich, Switzerland
| | - Martin Wolf
- University Hospital Zurich, University of Zurich, Department of Neonatology, Biomedical Optics Research Laboratory, Zurich, Switzerland
| | - Olivier Lambercy
- ETH Zurich, Department of Health Sciences and Technology, Rehabilitation Engineering Laboratory, Zurich, Switzerland
| | - Felix Scholkmann
- University Hospital Zurich, University of Zurich, Department of Neonatology, Biomedical Optics Research Laboratory, Zurich, Switzerland
- University of Bern, Institute of Complementary and Integrative Medicine, Bern, Switzerland
| | - Roger Gassert
- ETH Zurich, Department of Health Sciences and Technology, Rehabilitation Engineering Laboratory, Zurich, Switzerland
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Chiarelli AM, Perpetuini D, Croce P, Greco G, Mistretta L, Rizzo R, Vinciguerra V, Romeo MF, Zappasodi F, Merla A, Fallica PG, Edlinger G, Ortner R, Giaconia GC. Fiberless, Multi-Channel fNIRS-EEG System Based on Silicon Photomultipliers: Towards Sensitive and Ecological Mapping of Brain Activity and Neurovascular Coupling. SENSORS (BASEL, SWITZERLAND) 2020; 20:E2831. [PMID: 32429372 PMCID: PMC7285196 DOI: 10.3390/s20102831] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 05/08/2020] [Accepted: 05/13/2020] [Indexed: 11/17/2022]
Abstract
Portable neuroimaging technologies can be employed for long-term monitoring of neurophysiological and neuropathological states. Functional Near-Infrared Spectroscopy (fNIRS) and Electroencephalography (EEG) are highly suited for such a purpose. Their multimodal integration allows the evaluation of hemodynamic and electrical brain activity together with neurovascular coupling. An innovative fNIRS-EEG system is here presented. The system integrated a novel continuous-wave fNIRS component and a modified commercial EEG device. fNIRS probing relied on fiberless technology based on light emitting diodes and silicon photomultipliers (SiPMs). SiPMs are sensitive semiconductor detectors, whose large detection area maximizes photon harvesting from the scalp and overcomes limitations of fiberless technology. To optimize the signal-to-noise ratio and avoid fNIRS-EEG interference, a digital lock-in was implemented for fNIRS signal acquisition. A benchtop characterization of the fNIRS component showed its high performances with a noise equivalent power below 1 pW. Moreover, the fNIRS-EEG device was tested in vivo during tasks stimulating visual, motor and pre-frontal cortices. Finally, the capabilities to perform ecological recordings were assessed in clinical settings on one Alzheimer's Disease patient during long-lasting cognitive tests. The system can pave the way to portable technologies for accurate evaluation of multimodal brain activity, allowing their extensive employment in ecological environments and clinical practice.
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Affiliation(s)
- Antonio Maria Chiarelli
- Department of Neuroscience, Imaging and Clinical Sciences, Institute for Advanced Biomedical Technologies, University G. D’Annunzio of Chieti-Pescara, Via Luigi Polacchi 13, 66100 Chieti, Italy; (D.P.); (P.C.); (F.Z.); (A.M.)
| | - David Perpetuini
- Department of Neuroscience, Imaging and Clinical Sciences, Institute for Advanced Biomedical Technologies, University G. D’Annunzio of Chieti-Pescara, Via Luigi Polacchi 13, 66100 Chieti, Italy; (D.P.); (P.C.); (F.Z.); (A.M.)
| | - Pierpaolo Croce
- Department of Neuroscience, Imaging and Clinical Sciences, Institute for Advanced Biomedical Technologies, University G. D’Annunzio of Chieti-Pescara, Via Luigi Polacchi 13, 66100 Chieti, Italy; (D.P.); (P.C.); (F.Z.); (A.M.)
| | - Giuseppe Greco
- Department of Energy, Engineering and Mathematical Models, University of Palermo, Viale delle Scienze 9, 90128 Palermo, Italy; (G.G.); (L.M.); (R.R.); (G.C.G.)
| | - Leonardo Mistretta
- Department of Energy, Engineering and Mathematical Models, University of Palermo, Viale delle Scienze 9, 90128 Palermo, Italy; (G.G.); (L.M.); (R.R.); (G.C.G.)
| | - Raimondo Rizzo
- Department of Energy, Engineering and Mathematical Models, University of Palermo, Viale delle Scienze 9, 90128 Palermo, Italy; (G.G.); (L.M.); (R.R.); (G.C.G.)
| | - Vincenzo Vinciguerra
- ADG R&D, STMicroelectronics s.r.l., Stradale Primosole 50, 95121 Catania, Italy; (V.V.); (M.F.R.); (P.G.F.)
| | - Mario Francesco Romeo
- ADG R&D, STMicroelectronics s.r.l., Stradale Primosole 50, 95121 Catania, Italy; (V.V.); (M.F.R.); (P.G.F.)
| | - Filippo Zappasodi
- Department of Neuroscience, Imaging and Clinical Sciences, Institute for Advanced Biomedical Technologies, University G. D’Annunzio of Chieti-Pescara, Via Luigi Polacchi 13, 66100 Chieti, Italy; (D.P.); (P.C.); (F.Z.); (A.M.)
| | - Arcangelo Merla
- Department of Neuroscience, Imaging and Clinical Sciences, Institute for Advanced Biomedical Technologies, University G. D’Annunzio of Chieti-Pescara, Via Luigi Polacchi 13, 66100 Chieti, Italy; (D.P.); (P.C.); (F.Z.); (A.M.)
| | - Pier Giorgio Fallica
- ADG R&D, STMicroelectronics s.r.l., Stradale Primosole 50, 95121 Catania, Italy; (V.V.); (M.F.R.); (P.G.F.)
| | - Günter Edlinger
- Guger Technologies OG, Herbersteinstrasse 60, 8020 Graz, Austria;
| | - Rupert Ortner
- g.tec Medical Engineering Spain S.L., Calle Plom 5-7, 08038 Barcelona, Spain;
| | - Giuseppe Costantino Giaconia
- Department of Energy, Engineering and Mathematical Models, University of Palermo, Viale delle Scienze 9, 90128 Palermo, Italy; (G.G.); (L.M.); (R.R.); (G.C.G.)
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14
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Real-Time Dual-Wavelength Time-Resolved Diffuse Optical Tomography System for Functional Brain Imaging Based on Probe-Hosted Silicon Photomultipliers. SENSORS 2020; 20:s20102815. [PMID: 32429158 PMCID: PMC7287927 DOI: 10.3390/s20102815] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Revised: 05/11/2020] [Accepted: 05/12/2020] [Indexed: 01/12/2023]
Abstract
Near-infrared diffuse optical tomography is a non-invasive photonics-based imaging technology suited to functional brain imaging applications. Recent developments have proved that it is possible to build a compact time-domain diffuse optical tomography system based on silicon photomultipliers (SiPM) detectors. The system presented in this paper was equipped with the same eight SiPM probe-hosted detectors, but was upgraded with six injection fibers to shine the sample at several points. Moreover, an automatic switch was included enabling a complete measurement to be performed in less than one second. Further, the system was provided with a dual-wavelength (670 nm and 820 nm) light source to quantify the oxy- and deoxy-hemoglobin concentration evolution in the tissue. This novel system was challenged against a solid phantom experiment, and two in-vivo tests, namely arm occlusion and motor cortex brain activation. The results show that the tomographic system makes it possible to follow the evolution of brain activation over time with a 1s-resolution.
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15
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Imaging System Based on Silicon Photomultipliers and Light Emitting Diodes for Functional Near-Infrared Spectroscopy. APPLIED SCIENCES-BASEL 2020. [DOI: 10.3390/app10031068] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
We built a fiber-less prototype of an optical system with 156 channels each one consisting of an optode made of a silicon photomultiplier (SiPM) and a pair of light emitting diodes (LEDs) operating at 700 nm and 830 nm. The system uses functional near-infrared spectroscopy (fNIRS) and diffuse optical tomography (DOT) imaging of the cortical activity of the human brain at frequencies above 1 Hz. In this paper, we discuss testing and system optimization performed through measurements on a multi-layered optical phantom with mechanically movable parts that simulate near-infrared light scattering inhomogeneities. The baseline optical characteristics of the phantom are carefully characterized and compared to those of human tissues. Here we discuss several technical aspects of the system development, such as LED light output drift and its possible compensation, SiPM linearity, corrections of channel signal differences, and signal-to-noise ratio (SNR). We implement an imaging algorithm that investigates large phantom regions. Thanks to the use of SiPMs, very large source-to-detector distances are acquired with a high SNR and 2 Hz time resolution. The overall results demonstrate the high potentialities of a system based on SiPMs for fNIRS/DOT human brain imaging applications.
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16
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Kaynezhad P, Mitra S, Bale G, Bauer C, Lingam I, Meehan C, Avdic-Belltheus A, Martinello KA, Bainbridge A, Robertson NJ, Tachtsidis I. Quantification of the severity of hypoxic-ischemic brain injury in a neonatal preclinical model using measurements of cytochrome-c-oxidase from a miniature broadband-near-infrared spectroscopy system. NEUROPHOTONICS 2019; 6:045009. [PMID: 31737744 PMCID: PMC6855218 DOI: 10.1117/1.nph.6.4.045009] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2019] [Accepted: 10/14/2019] [Indexed: 05/05/2023]
Abstract
We describe the development of a miniaturized broadband near-infrared spectroscopy system (bNIRS), which measures changes in cerebral tissue oxyhemoglobin ( [ HbO 2 ] ) and deoxyhemoglobin ([HHb]) plus tissue metabolism via changes in the oxidation state of cytochrome-c-oxidase ([oxCCO]). The system is based on a small light source and a customized mini-spectrometer. We assessed the instrument in a preclinical study in 27 newborn piglets undergoing transient cerebral hypoxia-ischemia (HI). We aimed to quantify the recovery of the HI insult and estimate the severity of the injury. The recovery in brain oxygenation ( Δ [ HbDiff ] = Δ [ HbO 2 ] - Δ [ HHb ] ), blood volume ( Δ [ HbT ] = Δ [ HbO 2 ] + Δ [ HHb ] ), and metabolism ( Δ [ oxCCO ] ) for up to 30 min after the end of HI were quantified in percentages using the recovery fraction (RF) algorithm, which quantifies the recovery of a signal with respect to baseline. The receiver operating characteristic analysis was performed on bNIRS-RF measurements compared to proton ( H 1 ) magnetic resonance spectroscopic (MRS)-derived thalamic lactate/N-acetylaspartate (Lac/NAA) measured at 24-h post HI insult; Lac/NAA peak area ratio is an accurate surrogate marker of neurodevelopmental outcome in babies with neonatal HI encephalopathy. The Δ [ oxCCO ] -RF cut-off threshold of 79% within 30 min of HI predicted injury severity based on Lac/NAA with high sensitivity (100%) and specificity (93%). A significant difference in thalamic Lac/NAA was noticed ( p < 0.0001 ) between the two groups based on this cut-off threshold of 79% Δ [ oxCCO ] -RF. The severe injury group ( n = 13 ) had ∼ 30 % smaller recovery in Δ [ HbDiff ] -RF ( p = 0.0001 ) and no significant difference was observed in Δ [ HbT ] -RF between groups. At 48 h post HI, significantly higher P 31 -MRS-measured inorganic phosphate/exchangeable phosphate pool (epp) ( p = 0.01 ) and reduced phosphocreatine/epp ( p = 0.003 ) were observed in the severe injury group indicating persistent cerebral energy depletion. Based on these results, the bNIRS measurement of the oxCCO recovery fraction offers a noninvasive real-time biomarker of brain injury severity within 30 min following HI insult.
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Affiliation(s)
- Pardis Kaynezhad
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
- Address all correspondence to Ilias Tachtsidis, E-mail:
| | - Subhabrata Mitra
- University College London, Institute for Women’s Health, London, United Kingdom
| | - Gemma Bale
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Cornelius Bauer
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Ingran Lingam
- University College London, Institute for Women’s Health, London, United Kingdom
| | - Christopher Meehan
- University College London, Institute for Women’s Health, London, United Kingdom
| | | | | | - Alan Bainbridge
- University College London Hospital, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Nicola J. Robertson
- University College London, Institute for Women’s Health, London, United Kingdom
| | - Ilias Tachtsidis
- University College London, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
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17
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Kitsmiller VJ, O'Sullivan TD. Next-generation frequency domain diffuse optical imaging systems using silicon photomultipliers. OPTICS LETTERS 2019; 44:562-565. [PMID: 30702679 DOI: 10.1364/ol.44.000562] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Accepted: 12/23/2018] [Indexed: 05/27/2023]
Abstract
Diffuse optical imaging of biological tissue is a well-established methodology used to measure functional information from intrinsic contrast due to hemoglobin, water, and lipid. This information is exploited in frequency domain diffuse optical spectroscopy (FD-DOS) systems, which have been used to investigate chemotherapy response, optical mammography, and brain imaging. FD-DOS depth sensitivity and dynamic range are typically constrained by photodetector sensitivity. Here we present FD-DOS utilizing a silicon photomultiplier (SiPM) detector that has a higher signal-to-noise ratio (SNR) compared to an avalanche photodiode (APD), and thus enables extended source-detector (S/D) separations and increased depth penetration. We find the SiPM to have 10-30 dB greater SNR than a comparably sized APD while detecting 1.5-2 orders of magnitude lower light levels, down to ∼4 pW at 50 MHz modulation. The SiPM and APD recover optical property values of tissue-simulating phantoms within 13% agreement and are stable with 1% coefficient of variation over one hour. Finally, the SiPM is used to accurately recover optical properties in a reflectance geometry at S/D separations up to 48 mm in phantoms mimicking human breast tissue.
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18
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Maira G, Mazzillo M, Libertino S, Fallica G, Lombardo S. Crucial aspects for the use of silicon photomultiplier devices in continuous wave functional near-infrared spectroscopy. BIOMEDICAL OPTICS EXPRESS 2018; 9:4679-4688. [PMID: 30319895 PMCID: PMC6179408 DOI: 10.1364/boe.9.004679] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Revised: 07/10/2018] [Accepted: 07/18/2018] [Indexed: 05/18/2023]
Abstract
In this work, we investigate some major issues for the use of silicon photomultiplier (SiPM) devices in continuous wave functional near-infrared spectroscopy (CW fNIRS). We analyzed the after-pulsing effect, proposing the physical mechanism causing it, and determining its relevance for CW fNIRS. We studied the SiPM transients occurring as the SiPM device goes from the dark (LED in off state) to the illumination (LED in on state) conditions, and vice-versa. Finally, we studied the SiPM SNR in standard CW fNIRS operation.
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Affiliation(s)
- Giovanni Maira
- IMM-CNR, Strada VIII n. 5, Zona Industriale, 95121, Catania, CT, Italy
| | - Massimo Mazzillo
- STMicroelectronics s.r.l. Str. Primosole, n. 50, 95121, Catania, CT, Italy
| | - Sebania Libertino
- IMM-CNR, Strada VIII n. 5, Zona Industriale, 95121, Catania, CT, Italy
| | - Giorgio Fallica
- STMicroelectronics s.r.l. Str. Primosole, n. 50, 95121, Catania, CT, Italy
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Miao Y, Koomson VJ. A CMOS-Based Bidirectional Brain Machine Interface System With Integrated fdNIRS and tDCS for Closed-Loop Brain Stimulation. IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 2018; 12:554-563. [PMID: 29877819 DOI: 10.1109/tbcas.2018.2798924] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
A CMOS-based bidirectional brain machine interface system with on-chip frequency-domain near infrared spectroscopy (fdNIRS) and transcranial direct-current stimulation (tDCS) is designed to enable noninvasive closed-loop brain stimulation for neural disorders treatment and cognitive performance enhancement. The dual channel fdNIRS can continuously monitor absolute cerebral oxygenation during the entire tDCS process by measuring NIR light's attenuation and phase shift across brain tissue. Each fdNIRS channel provides 120 dBΩ transimpedance gain at 80 MHz with a power consumption of 30 mW while tolerating up to 8 pF input capacitance. A photocurrent between 10 and 450 nA can be detected with a phase resolution down to 0.2°. A lensless system with subnanowatt sensitivity is realized by using an avalanche photodiode. The on-chip programmable voltage-controlled resistor stimulator can support a stimulation current from 0.6 to 2.2 mA with less than 1% variation, which covers the required current range of tDCS. The chip is fabricated in a standard 130-nm CMOS process and occupies an area of 2.25 mm2.
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20
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Zhao H, Cooper RJ. Review of recent progress toward a fiberless, whole-scalp diffuse optical tomography system. NEUROPHOTONICS 2018; 5:011012. [PMID: 28983490 PMCID: PMC5613216 DOI: 10.1117/1.nph.5.1.011012] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2017] [Accepted: 08/28/2017] [Indexed: 05/23/2023]
Abstract
The development of a whole-scalp, high sampling-density diffuse optical tomography (DOT) system is a critical next step in the evolution of the field of diffuse optics. To achieve this with optical fiber bundles is extremely challenging, simply because of the sheer number of bundles required, and the associated challenges of weight and ergonomics. Dispensing with optical fiber bundles and moving to head-mounted optoelectronics can potentially facilitate the advent of a new generation of wearable, whole-scalp technologies that will open up a range of new experimental and clinical applications for diffuse optical measurements. Here, we present a concise review of the significant progress that has been made toward achieving a wearable, fiberless, high-density, whole-scalp DOT system. We identify the key limitations of current technologies and discuss the possible opportunities for future development.
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Affiliation(s)
- Hubin Zhao
- University College London, Biomedical Optics Research Laboratory, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
| | - Robert J. Cooper
- University College London, Biomedical Optics Research Laboratory, Department of Medical Physics and Biomedical Engineering, London, United Kingdom
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21
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Time-Domain Functional Diffuse Optical Tomography System Based on Fiber-Free Silicon Photomultipliers. APPLIED SCIENCES-BASEL 2017. [DOI: 10.3390/app7121235] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Wyser D, Lambercy O, Scholkmann F, Wolf M, Gassert R. Wearable and modular functional near-infrared spectroscopy instrument with multidistance measurements at four wavelengths. NEUROPHOTONICS 2017; 4:041413. [PMID: 28840164 PMCID: PMC5562388 DOI: 10.1117/1.nph.4.4.041413] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2017] [Accepted: 07/12/2017] [Indexed: 05/22/2023]
Abstract
With the aim of transitioning functional near-infrared spectroscopy (fNIRS) technology from the laboratory environment to everyday applications, the field has seen a recent push toward the development of wearable/miniaturized, multiwavelength, multidistance, and modular instruments. However, it is challenging to unite all these requirements in a precision instrument with low noise, low drift, and fast sampling characteristics. We present the concept and development of a wearable fNIRS instrument that combines all these key features with the goal of reliably and accurately capturing brain hemodynamics. The proposed instrument consists of a modular network of miniaturized optode modules that include a four-wavelength light source and a highly sensitive silicon photomultiplier detector. Simultaneous measurements with short-separation (7.5 mm; containing predominantly extracerebral signals) and long-separation (20 mm or more; containing both extracerebral and cerebral information) channels are used with short-channel regression filtering methods to increase robustness of fNIRS measurements. Performance of the instrument was characterized with phantom measurements and further validated in human in vivo measurements, demonstrating the good raw signal quality (signal-to-noise ratio of 64 dB for short channels; robust measurements up to 50 mm; dynamic optical range larger than 160 dB), the valid estimation of concentration changes (oxy- and deoxyhemoglobin, and cytochrome-c-oxidase) in muscle and brain, and the detection of task-evoked brain activity. The results of our preliminary tests suggest that the presented fNIRS instrument outperforms existing instruments in many aspects and bears high potential for real-time single-trial fNIRS applications as required for wearable brain-computer interfaces.
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Affiliation(s)
- Dominik Wyser
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
- University Hospital of Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
- Address all correspondence to: Dominik Wyser, E-mail:
| | - Olivier Lambercy
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
| | - Felix Scholkmann
- University Hospital of Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
| | - Martin Wolf
- University Hospital of Zurich, Biomedical Optics Research Laboratory, Department of Neonatology, Zurich, Switzerland
| | - Roger Gassert
- ETH Zurich, Rehabilitation Engineering Laboratory, Department of Health Sciences and Technology, Zurich, Switzerland
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23
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Chiarelli AM, Libertino S, Zappasodi F, Mazzillo M, Pompeo FD, Merla A, Lombardo S, Fallica G. Characterization of a fiber-less, multichannel optical probe for continuous wave functional near-infrared spectroscopy based on silicon photomultipliers detectors: in-vivo assessment of primary sensorimotor response. NEUROPHOTONICS 2017; 4:035002. [PMID: 28983487 PMCID: PMC5615232 DOI: 10.1117/1.nph.4.3.035002] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2017] [Accepted: 09/01/2017] [Indexed: 05/29/2023]
Abstract
We report development, testing, and in vivo characterization of a multichannel optical probe for continuous wave (CW) functional near-infrared spectroscopy (fNIRS) that relies on silicon photomultipliers (SiPMs) detectors. SiPMs are cheap, low voltage, and robust semiconductor light detectors with performances analogous to photomultiplier tubes (PMTs). In contrast with PMTs, SiPMs allow direct contact with the head and transfer of the analog signals through thin cables greatly increasing the system flexibility avoiding optical fibers. The coupling of SiPMs and light-emitting diodes (LEDs) made the optical probe lightweight and robust against motion artifacts. After characterization of SiPM performances, which was proven to provide a noise equivalent power below 3 fW, the apparatus was compared through an in vivo experiment to a commercial system relying on laser diodes, PMTs, and optical fibers for light probing and detection. The optical probes were located over the primary sensorimotor cortex and the similarities between the hemodynamic responses to the contralateral motor task were assessed. When compared to other state-of-the-art wearable fNIRS systems, where photodiode detectors are employed, the single photon sensitivity and dynamic range of SiPMs can fully exploit the long and variable interoptode distances needed for correct estimation of brain hemodynamics using CW-fNIRS.
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Affiliation(s)
- Antonio M. Chiarelli
- G.d’Annunzio University of Chieti-Pescara, Institute for Advanced Biomedical Technologies, Department of Neurosciences, Imaging and Clinical Sciences, Italy
| | - Sebania Libertino
- National Research Council (CNR), Microelectronics and Microsystems (IMM), Catania, Italy
| | - Filippo Zappasodi
- G.d’Annunzio University of Chieti-Pescara, Institute for Advanced Biomedical Technologies, Department of Neurosciences, Imaging and Clinical Sciences, Italy
| | | | - Francesco Di Pompeo
- G.d’Annunzio University of Chieti-Pescara, Institute for Advanced Biomedical Technologies, Department of Neurosciences, Imaging and Clinical Sciences, Italy
| | - Arcangelo Merla
- G.d’Annunzio University of Chieti-Pescara, Institute for Advanced Biomedical Technologies, Department of Neurosciences, Imaging and Clinical Sciences, Italy
| | - Salvatore Lombardo
- National Research Council (CNR), Microelectronics and Microsystems (IMM), Catania, Italy
| | - Giorgio Fallica
- STMicroelectronics, Research and Development, Catania, Italy
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Mazzillo M, Mello D, Barbarino PP, Romeo M, Musienko Y, Sciuto A, Libertino S, Lombardo S, Fallica G. Noise Reduction in Silicon Photomultipliers for Use in Functional Near-Infrared Spectroscopy. IEEE TRANSACTIONS ON RADIATION AND PLASMA MEDICAL SCIENCES 2017. [DOI: 10.1109/trpms.2017.2679003] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Pifferi A, Contini D, Mora AD, Farina A, Spinelli L, Torricelli A. New frontiers in time-domain diffuse optics, a review. JOURNAL OF BIOMEDICAL OPTICS 2016; 21:091310. [PMID: 27311627 DOI: 10.1117/1.jbo.21.9.091310] [Citation(s) in RCA: 106] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Accepted: 05/24/2016] [Indexed: 05/20/2023]
Abstract
The recent developments in time-domain diffuse optics that rely on physical concepts (e.g., time-gating and null distance) and advanced photonic components (e.g., vertical cavity source-emitting laser as light sources, single photon avalanche diode, and silicon photomultipliers as detectors, fast-gating circuits, and time-to-digital converters for acquisition) are focused. This study shows how these tools could lead on one hand to compact and wearable time-domain devices for point-of-care diagnostics down to the consumer level and on the other hand to powerful systems with exceptional depth penetration and sensitivity.
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Affiliation(s)
- Antonio Pifferi
- Politecnico di Milano, Dipartimento di Fisica, Piazza Leonardo da Vinci 32, Milan I-20133, ItalybIstituto di Fotonica e Nanotecnologie, Consiglio Nazionale per le Ricerche, Piazza Leonardo da Vinci 32, Milan I-20133, Italy
| | - Davide Contini
- Politecnico di Milano, Dipartimento di Fisica, Piazza Leonardo da Vinci 32, Milan I-20133, Italy
| | - Alberto Dalla Mora
- Politecnico di Milano, Dipartimento di Fisica, Piazza Leonardo da Vinci 32, Milan I-20133, Italy
| | - Andrea Farina
- Istituto di Fotonica e Nanotecnologie, Consiglio Nazionale per le Ricerche, Piazza Leonardo da Vinci 32, Milan I-20133, Italy
| | - Lorenzo Spinelli
- Istituto di Fotonica e Nanotecnologie, Consiglio Nazionale per le Ricerche, Piazza Leonardo da Vinci 32, Milan I-20133, Italy
| | - Alessandro Torricelli
- Politecnico di Milano, Dipartimento di Fisica, Piazza Leonardo da Vinci 32, Milan I-20133, ItalybIstituto di Fotonica e Nanotecnologie, Consiglio Nazionale per le Ricerche, Piazza Leonardo da Vinci 32, Milan I-20133, Italy
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26
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Pagano R, Libertino S, Sanfilippo D, Fallica G, Lombardo S. Improvement of sensitivity in continuous wave near infra-red spectroscopy systems by using silicon photomultipliers. BIOMEDICAL OPTICS EXPRESS 2016; 7:1183-92. [PMID: 27486551 PMCID: PMC4929631 DOI: 10.1364/boe.7.001183] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2015] [Revised: 11/12/2015] [Accepted: 11/13/2015] [Indexed: 05/15/2023]
Abstract
We experimentally analyze the signal-to-noise ratio of continuous wave (CW) near infrared spectroscopy (NIRS) reflectance systems based on light emitting diodes and silicon photomultipliers for high performance low cost NIRS biomedical systems. We show that under suitable experimental conditions such systems exhibit a high SNR, which allows an SDS of 7 cm, to our knowledge the largest ever demonstrated in a CW-NIRs system.
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Affiliation(s)
| | | | - Delfo Sanfilippo
- IMS R&D, STMicroelectronics, Stradale Primosole 50, Catania, 95121, Italy
| | - Giorgio Fallica
- IMS R&D, STMicroelectronics, Stradale Primosole 50, Catania, 95121, Italy
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27
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Mora AD, Martinenghi E, Contini D, Tosi A, Boso G, Durduran T, Arridge S, Martelli F, Farina A, Torricelli A, Pifferi A. Fast silicon photomultiplier improves signal harvesting and reduces complexity in time-domain diffuse optics. OPTICS EXPRESS 2015; 23:13937-46. [PMID: 26072763 DOI: 10.1364/oe.23.013937] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
We present a proof of concept prototype of a time-domain diffuse optics probe exploiting a fast Silicon PhotoMultiplier (SiPM), featuring a timing resolution better than 80 ps, a fast tail with just 90 ps decay time-constant and a wide active area of 1 mm2. The detector is hosted into the probe and used in direct contact with the sample under investigation, thus providing high harvesting efficiency by exploiting the whole SiPM numerical aperture and also reducing complexity by avoiding the use of cumbersome fiber bundles. Our tests also demonstrate high accuracy and linearity in retrieving the optical properties and suitable contrast and depth sensitivity for detecting localized inhomogeneities. In addition to a strong improvement in both instrumentation cost and size with respect to legacy solutions, the setup performances are comparable to those of state-of-the-art time-domain instrumentation, thus opening a new way to compact, low-cost and high-performance time-resolved devices for diffuse optical imaging and spectroscopy.
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Scholkmann F, Kleiser S, Metz AJ, Zimmermann R, Mata Pavia J, Wolf U, Wolf M. A review on continuous wave functional near-infrared spectroscopy and imaging instrumentation and methodology. Neuroimage 2014; 85 Pt 1:6-27. [PMID: 23684868 DOI: 10.1016/j.neuroimage.2013.05.004] [Citation(s) in RCA: 1035] [Impact Index Per Article: 103.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2013] [Revised: 04/12/2013] [Accepted: 05/03/2013] [Indexed: 01/09/2023] Open
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