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Liu Z, Guo Z, Zhou J, Guo X, Chen Y. Biotic interactions and environmental modifications determine symbiotic microbial diversity and stability. Comput Struct Biotechnol J 2024; 23:2717-2726. [PMID: 39040687 PMCID: PMC11260581 DOI: 10.1016/j.csbj.2024.05.047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2023] [Revised: 05/09/2024] [Accepted: 05/28/2024] [Indexed: 07/24/2024] Open
Abstract
Taking amphibians as island models, we examined the effects of interspecific interaction on the diversity and stability of microbial ecological. As skin area increased, the diversity and stability of skin microbes decreased, but the strength of negative interactions increased significantly. In contrast, as gut area increased, the diversity and stability of gut microbes increased, but the strength of interactions remained constant. These results indicate that microbial interactions are affected by habitat properties. When living in fluctuating environments without strong filtering, microorganisms can enhance their negative interactions with other taxa by changing the pH of their surroundings. In contrast, the pH of the gut is relatively stable, and colonized microorganisms cannot alter the gut pH and inhibit other colonizers. This study demonstrates that in the field of microbiology, diversity and stability are predominantly influenced by the intensity of interspecies interactions. The findings in this study deepen our understanding of microbial diversity and stability and provide a mechanistic link between species interactions, biodiversity, and stability in microbial ecosystems.
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Affiliation(s)
- Zhidong Liu
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zeguang Guo
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jin Zhou
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xuecheng Guo
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Youhua Chen
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
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2
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Xu JY, Zhang H, Pu XM, Li QW, Pan JF, Yan ZG. Salinity influence correction for zinc ion seawater quality criteria and ecological risk assessment in Chinese seas. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:174835. [PMID: 39025148 DOI: 10.1016/j.scitotenv.2024.174835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 07/14/2024] [Accepted: 07/14/2024] [Indexed: 07/20/2024]
Abstract
The increasing prevalence of zinc pollution in marine ecosystems, primarily from industrial sources, has become a global environmental concern. This study addresses zinc toxicity in Chinese coastal waters, emphasizing the importance of considering environmental factors like salinity and temperature in establishing water quality criteria (WQC). Data collected from various marine regions underwent meticulous analysis, incorporating salinity corrections to derive more precise criteria values. The short-term criteria for the Bohai Sea, Yellow Sea, East China Sea, and South China Sea were 94.0, 77.6, 84.2, and 118 μg/L under the salinity correction, respectively, and the long-term criteria was 4.10 μg/L. Ecological risk assessments employing diverse methodologies revealed varying levels of risk across sea areas, underscoring the nuanced nature of zinc pollution's impact on marine ecosystems. Greater acute and chronic risk of zinc ions observed in the Yellow Sea region. These findings underscore the imperative need for tailored management strategies to protect local marine life from the environmental threats posed by zinc.
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Affiliation(s)
- Jia-Yin Xu
- Key Laboratory of Environment and Ecology (Ministry of Education), Ocean University of China, Qingdao, Shandong 266100, China; Research Center of Marine Ecology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, Shandong 266061, China
| | - Heng Zhang
- Key Laboratory of Environment and Ecology (Ministry of Education), Ocean University of China, Qingdao, Shandong 266100, China; Research Center of Marine Ecology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, Shandong 266061, China
| | - Xin-Ming Pu
- Research Center of Marine Ecology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, Shandong 266061, China; Laboratory for Marine Ecology and Environmental Science, Laoshan Laboratory, Qingdao, Shandong 266200, China
| | - Qing-Wei Li
- Key Laboratory of Environment and Ecology (Ministry of Education), Ocean University of China, Qingdao, Shandong 266100, China; Research Center of Marine Ecology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, Shandong 266061, China
| | - Jin-Fen Pan
- Key Laboratory of Environment and Ecology (Ministry of Education), Ocean University of China, Qingdao, Shandong 266100, China; Laboratory for Marine Ecology and Environmental Science, Laoshan Laboratory, Qingdao, Shandong 266200, China.
| | - Zhen-Guang Yan
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
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Wu R, Xia H, Wu Y, Zhang S, Fang J, Wang Y, Wang H, Zhu Y, Liu L, Du S. Graphene oxide inhibits the transfer of ARGs in rice by reducing the root endophytic bacterial complexity. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 368:122241. [PMID: 39186855 DOI: 10.1016/j.jenvman.2024.122241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Revised: 08/12/2024] [Accepted: 08/16/2024] [Indexed: 08/28/2024]
Abstract
Antibiotic resistance genes (ARGs) as an emerging contaminant have attracted much attention for their transfer in agricultural ecosystems. Meanwhile, graphene oxide (GO), due to its high adsorption capacity and antibacterial properties, poses potential environmental ecological risks to the occurrence of ARGs, bacteria, and plant physiological ecology. However, the impact and mechanism of GO on the transfer of ARGs in host plants remain unclear. Therefore, this study selected rice as the research object and inoculated Bacillus subtilis carrying ARGs to investigate the influence of GO on the migration of ARGs into rice and its microbiological mechanism. The study found that GO had a certain inhibitory effect on the transfer of ARGs in rice. Although GO reduced the rhizosphere pH in rice, leading to a transition in endophytic bacteria from dominance by Burkholderia to dominance by Gordonia, this process did not directly affect the transfer of ARGs in rice. Further analysis of bacterial interactions revealed that GO could inhibit the transfer of ARGs in rice by reducing the network complexity of endophytic bacteria. Additionally, GO inhibited the formation of endophytic bacterial biofilms and mobile elements, which might affect ARGs' migration in rice. This study elucidated the key microbiological ecological processes of GO on the transfer of ARGs in rice, providing fundamental information for the ecological risk assessment of GO.
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Affiliation(s)
- Ran Wu
- Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Interdisciplinary Research Academy (IRA), Zhejiang Shuren University, Hangzhou, 310015, China
| | - Hanche Xia
- Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Interdisciplinary Research Academy (IRA), Zhejiang Shuren University, Hangzhou, 310015, China
| | - Yue Wu
- Zhejiang Zhongyi Testing Research Institute Co., Ltd, Ningbo, 315040, China
| | - Siyu Zhang
- Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Interdisciplinary Research Academy (IRA), Zhejiang Shuren University, Hangzhou, 310015, China
| | - Jin Fang
- College of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310018, China
| | - Yuying Wang
- Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Interdisciplinary Research Academy (IRA), Zhejiang Shuren University, Hangzhou, 310015, China
| | - Hua Wang
- College of Geography and Environmental Sciences, Zhejiang Normal University, Jinhua, 321004, China
| | - Yaxin Zhu
- Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Interdisciplinary Research Academy (IRA), Zhejiang Shuren University, Hangzhou, 310015, China
| | - Lijuan Liu
- Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Interdisciplinary Research Academy (IRA), Zhejiang Shuren University, Hangzhou, 310015, China
| | - Shaoting Du
- Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Interdisciplinary Research Academy (IRA), Zhejiang Shuren University, Hangzhou, 310015, China.
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Song J, Wang Y, Huang L, Peng Y, Tan K, Tan K. The effects of bivalve aquaculture on carbon storage in the water column and sediment of aquaculture areas. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 937:173538. [PMID: 38802009 DOI: 10.1016/j.scitotenv.2024.173538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 05/18/2024] [Accepted: 05/24/2024] [Indexed: 05/29/2024]
Abstract
Many researchers have evaluated the fishery carbon sink potential of bivalve aquaculture, with most studies focusing on the Life Cycle Assessment (LCA) of individual bivalves, and there is currently no consensus on whether bivalves are carbon sinks or carbon sources. It is worth noting that most studies have not considered the impact of bivalve aquaculture on ecosystems when evaluating its carbon sink potential. In this context, based on existing literature, this article aims to comprehensively review the effects of bivalve aquaculture on carbon storage in the water column and sediment of aquaculture areas. In general, our findings revealed that moderate and low stocking densities of bivalve aquaculture do not lead to significant changes in the abundance of phytoplankton, but it does indeed alter the phytoplankton community structure from dominated by huge diatom with lower carbon densities to dominated by small phytoplankton with higher carbon densities. Therefore, bivalve aquaculture may increase the total carbon storage in the water column. In addition, bivalve aquaculture also increases the sedimentation rate of suspended particles, increasing the rate of carbon burial, especially in low-energy environment and shallow water areas. The findings of this article fill the knowledge gap of fishery carbon sink in bivalve aquaculture from an ecosystem perspective.
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Affiliation(s)
- Jingjing Song
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Qinzhou, Guangxi, China
| | - Youji Wang
- International Research Center for Marine Biosciences at Shanghai Ocean University, Ministry of Science and Technology, Shanghai Ocean University, Shanghai 201306, China
| | - Leiheng Huang
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Qinzhou, Guangxi, China
| | - Ya Peng
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Qinzhou, Guangxi, China
| | - Kianann Tan
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Qinzhou, Guangxi, China
| | - Karsoon Tan
- College of Marine Science, Guangxi Key Laboratory of Beibu Gulf Biodiversity Conservation, Beibu Gulf Ocean Development Research Center, Beibu Gulf University, Pinglu Canal and Beibu Gulf Coastal Ecosystem Observation and Research Station of Guangxi, Qinzhou, Guangxi, China.
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Ullah H, Fordham DA, Goldenberg SU, Nagelkerken I. Combining mesocosms with models reveals effects of global warming and ocean acidification on a temperate marine ecosystem. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2024; 34:e2977. [PMID: 38706047 DOI: 10.1002/eap.2977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 12/27/2023] [Indexed: 05/07/2024]
Abstract
Ocean warming and species exploitation have already caused large-scale reorganization of biological communities across the world. Accurate projections of future biodiversity change require a comprehensive understanding of how entire communities respond to global change. We combined a time-dynamic integrated food web modeling approach (Ecosim) with previous data from community-level mesocosm experiments to determine the independent and combined effects of ocean warming, ocean acidification and fisheries exploitation on a well-managed temperate coastal ecosystem. The mesocosm parameters enabled important physiological and behavioral responses to climate stressors to be projected for trophic levels ranging from primary producers to top predators, including sharks. Through model simulations, we show that under sustainable rates of fisheries exploitation, near-future warming or ocean acidification in isolation could benefit species biomass at higher trophic levels (e.g., mammals, birds, and demersal finfish) in their current climate ranges, with the exception of small pelagic fishes. However, under warming and acidification combined, biomass increases at higher trophic levels will be lower or absent, while in the longer term reduced productivity of prey species is unlikely to support the increased biomass at the top of the food web. We also show that increases in exploitation will suppress any positive effects of human-driven climate change, causing individual species biomass to decrease at higher trophic levels. Nevertheless, total future potential biomass of some fisheries species in temperate areas might remain high, particularly under acidification, because unharvested opportunistic species will likely benefit from decreased competition and show an increase in biomass. Ecological indicators of species composition such as the Shannon diversity index decline under all climate change scenarios, suggesting a trade-off between biomass gain and functional diversity. By coupling parameters from multilevel mesocosm food web experiments with dynamic food web models, we were able to simulate the generative mechanisms that drive complex responses of temperate marine ecosystems to global change. This approach, which blends theory with experimental data, provides new prospects for forecasting climate-driven biodiversity change and its effects on ecosystem processes.
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Affiliation(s)
- Hadayet Ullah
- Southern Seas Ecology Laboratories, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Damien A Fordham
- The Environment Institute, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, Australia
- Center for Macroecology, Evolution, and Climate, Globe Institute, University of Copenhagen, Copenhagen, Denmark
| | - Silvan U Goldenberg
- Southern Seas Ecology Laboratories, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
- GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany
| | - Ivan Nagelkerken
- Southern Seas Ecology Laboratories, School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
- The Environment Institute, School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, Australia
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Wolf KKE, Hoppe CJM, Rehder L, Schaum E, John U, Rost B. Heatwave responses of Arctic phytoplankton communities are driven by combined impacts of warming and cooling. SCIENCE ADVANCES 2024; 10:eadl5904. [PMID: 38758795 PMCID: PMC11100554 DOI: 10.1126/sciadv.adl5904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2023] [Accepted: 04/15/2024] [Indexed: 05/19/2024]
Abstract
Marine heatwaves are increasing in frequency and intensity as climate change progresses, especially in the highly productive Arctic regions. Although their effects on primary producers will largely determine the impacts on ecosystem services, mechanistic understanding on phytoplankton responses to these extreme events is still very limited. We experimentally exposed Arctic phytoplankton assemblages to stable warming, as well as to repeated heatwaves, and measured temporally resolved productivity, physiology, and composition. Our results show that even extreme stable warming increases productivity, while the response to heatwaves depends on the specific scenario applied and is not predictable from stable warming responses. This appears to be largely due to the underestimated impact of the cool phase following a heatwave, which can be at least as important as the warm phase for the overall response. We show that physiological and compositional adjustments to both warm and cool phases drive overall phytoplankton productivity and need to be considered mechanistically to predict overall ecosystem impacts.
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Affiliation(s)
- Klara K. E. Wolf
- Institute of Marine Ecosystem and Fishery Science, University of Hamburg, Hamburg, Germany
- Environmental Genomics, University of Konstanz, Konstanz, Germany
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Clara J. M. Hoppe
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Linda Rehder
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Elisa Schaum
- Institute of Marine Ecosystem and Fishery Science, University of Hamburg, Hamburg, Germany
| | - Uwe John
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
- Helmholtz Institute for Functional Marine Biodiversity (HIFMB), Oldenburg, Germany
| | - Björn Rost
- Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
- FB2, University of Bremen, Bremen, Germany
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Hong Y, Li H, Chen L, Su H, Zhang B, Luo Y, Li C, Zhao Z, Shao Y, Guo L. Short-term exposure to antibiotics begets long-term disturbance in gut microbial metabolism and molecular ecological networks. MICROBIOME 2024; 12:80. [PMID: 38715137 PMCID: PMC11075301 DOI: 10.1186/s40168-024-01795-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Accepted: 03/14/2024] [Indexed: 05/12/2024]
Abstract
BACKGROUND Antibiotic exposure can occur in medical settings and from environmental sources. Long-term effects of brief antibiotic exposure in early life are largely unknown. RESULTS Post a short-term treatment by ceftriaxone to C57BL/6 mice in early life, a 14-month observation was performed using 16S rRNA gene-sequencing technique, metabolomics analysis, and metagenomics analysis on the effects of ceftriaxone exposure. Firstly, the results showed that antibiotic pre-treatment significantly disturbed gut microbial α and β diversities (P < 0.05). Both Chao1 indices and Shannon indices manifested recovery trends over time, but they didn't entirely recover to the baseline of control throughout the experiment. Secondly, antibiotic pre-treatment reduced the complexity of gut molecular ecological networks (MENs). Various network parameters were affected and manifested recovery trends over time with different degrees, such as nodes (P < 0.001, R2 = 0.6563), links (P < 0.01, R2 = 0.4543), number of modules (P = 0.0672, R2 = 0.2523), relative modularity (P = 0.6714, R2 = 0.0155), number of keystones (P = 0.1003, R2 = 0.2090), robustness_random (P = 0.79, R2 = 0.0063), and vulnerability (P = 0.0528, R2 = 0.28). The network parameters didn't entirely recover. Antibiotic exposure obviously reduced the number of key species in gut MENs. Interestingly, new keystones appeared during the recovery process of network complexity. Changes in network stability might be caused by variations in network complexity, which supports the ecological theory that complexity begets stability. Besides, the metabolism profiles of the antibiotic group and control were significantly different. Correlation analysis showed that antibiotic-induced differences in gut microbial metabolism were related to MEN changes. Antibiotic exposure also caused long-term effects on gut microbial functional networks in mice. CONCLUSIONS These results suggest that short-term antibiotic exposure in early life will cause long-term negative impacts on gut microbial diversity, MENs, and microbial metabolism. Therefore, great concern should be raised about children's brief exposure to antibiotics if the results observed in mice are applicable to humans. Video Abstract.
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Affiliation(s)
- Yuehui Hong
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
- Jiangmen Key Laboratory of Traditional Chinese Medicine Ingredients and Their Mechanisms of Action, Guangdong Jiangmen Chinese Medicine College, Jiangmen, 529000, China
| | - Hao Li
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
| | - Linkang Chen
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
| | - Hongtian Su
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
| | - Bin Zhang
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
| | - Yu Luo
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
| | - Chengji Li
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
| | - Zuguo Zhao
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China
| | - Yiming Shao
- Dongguan Key Laboratory of Sepsis Translational Medicine, The First Dongguan Affiliated Hospital, Guangdong Medical University, Dongguan, 523808, China.
| | - Lianxian Guo
- Dongguan Key Laboratory of Public Health Laboratory Science, The First Dongguan Affiliated Hospital, School of Public Health, Guangdong Medical University, Dongguan, 523808, China.
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Wang X, Wang Z, Chen F, Zhang Z, Fang J, Xing L, Zeng J, Zhang Q, Liu H, Liu W, Ren C, Yang G, Zhong Z, Zhang W, Han X. Deterministic assembly of grassland soil microbial communities driven by climate warming amplifies soil carbon loss. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 923:171418. [PMID: 38460701 DOI: 10.1016/j.scitotenv.2024.171418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Revised: 02/27/2024] [Accepted: 02/29/2024] [Indexed: 03/11/2024]
Abstract
Perturbations in soil microbial communities caused by climate warming are expected to have a strong impact on biodiversity and future climate-carbon (C) feedback, especially in vulnerable habitats that are highly sensitive to environmental change. Here, we investigate the impact of four-year experimental warming on soil microbes and C cycling in the Loess Hilly Region of China. The results showed that warming led to soil C loss, mainly from labile C, and this C loss is associated with microbial response. Warming significantly decreased soil bacterial diversity and altered its community structure, especially increasing the abundance of heat-tolerant microorganisms, but had no effect on fungi. Warming also significantly increased the relative importance of homogeneous selection and decreased "drift" of bacterial and fungal communities. Moreover, warming decreased bacterial network stability but increased fungal network stability. Notably, the magnitude of soil C loss was significantly and positively correlated with differences in bacterial community characteristics under ambient and warming conditions, including diversity, composition, network stability, and community assembly. This result suggests that microbial responses to warming may amplify soil C loss. Combined, these results provide insights into soil microbial responses and C feedback in vulnerable ecosystems under climate warming scenarios.
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Affiliation(s)
- Xing Wang
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Zhengchen Wang
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Fang Chen
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Zhenjiao Zhang
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Jingbo Fang
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Liheng Xing
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Jia Zeng
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Qi Zhang
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Hanyu Liu
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Weichao Liu
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Chengjie Ren
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Gaihe Yang
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Zekun Zhong
- Institute of Soil and Water Conservation, Northwest A&F University, Yangling 712100, Shaanxi, PR China
| | - Wei Zhang
- College of Grassland Agriculture, Northwest A&F University, Yangling 712100, Shaanxi, PR China.
| | - Xinhui Han
- College of Agronomy, Northwest A&F University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China.
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9
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Loos D, Filho APDC, Dutilh BE, Barber AE, Panagiotou G. A global survey of host, aquatic, and soil microbiomes reveals shared abundance and genomic features between bacterial and fungal generalists. Cell Rep 2024; 43:114046. [PMID: 38581683 DOI: 10.1016/j.celrep.2024.114046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 12/22/2023] [Accepted: 03/19/2024] [Indexed: 04/08/2024] Open
Abstract
Environmental change, coupled with alteration in human lifestyles, is profoundly impacting the microbial communities critical to the health of the Earth and its inhabitants. To identify bacteria and fungi that are resistant and susceptible to habitat change, we analyze thousands of genera detected in 1,580 host, soil, and aquatic samples. This large-scale analysis identifies 48 bacterial and 4 fungal genera that are abundant across the three biomes, demonstrating fitness in diverse environmental conditions. Samples containing these generalists have significantly higher alpha diversity. These generalists play a significant role in shaping cross-kingdom community structure, boasting larger genomes with more secondary metabolism and antimicrobial resistance genes. Conversely, 30 bacterial and 19 fungal genera are only found in a single habitat, suggesting a limited ability to adapt to different and changing environments. These findings contribute to our understanding of microbial niche breadth and its consequences for global biodiversity loss.
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Affiliation(s)
- Daniel Loos
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany
| | - Ailton Pereira da Costa Filho
- Junior Research Group Fungal Informatics, Institute of Microbiology, Friedrich Schiller University, Jena, Germany; Cluster of Excellence Balance of the Microverse, Friedrich Schiller University, Jena, Germany
| | - Bas E Dutilh
- Cluster of Excellence Balance of the Microverse, Friedrich Schiller University, Jena, Germany; Institute of Biodiversity, Friedrich Schiller University, Jena, Germany; Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, the Netherlands
| | - Amelia E Barber
- Junior Research Group Fungal Informatics, Institute of Microbiology, Friedrich Schiller University, Jena, Germany; Cluster of Excellence Balance of the Microverse, Friedrich Schiller University, Jena, Germany.
| | - Gianni Panagiotou
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute, Jena, Germany; Cluster of Excellence Balance of the Microverse, Friedrich Schiller University, Jena, Germany; Faculty of Biological Sciences, Friedrich Schiller University, Jena, Germany.
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10
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Aji LP, Maas DL, Capriati A, Ahmad A, de Leeuw C, Becking LE. Shifts in dominance of benthic communities along a gradient of water temperature and turbidity in tropical coastal ecosystems. PeerJ 2024; 12:e17132. [PMID: 38666078 PMCID: PMC11044884 DOI: 10.7717/peerj.17132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 02/27/2024] [Indexed: 04/28/2024] Open
Abstract
Tropical coastal benthic communities will change in species composition and relative dominance due to global (e.g., increasing water temperature) and local (e.g., increasing terrestrial influence due to land-based activity) stressors. This study aimed to gain insight into possible trajectories of coastal benthic assemblages in Raja Ampat, Indonesia, by studying coral reefs at varying distances from human activities and marine lakes with high turbidity in three temperature categories (<31 °C, 31-32 °C, and >32 °C). The benthic community diversity and relative coverage of major benthic groups were quantified via replicate photo transects. The composition of benthic assemblages varied significantly among the reef and marine lake habitats. The marine lakes <31 °C contained hard coral, crustose coralline algae (CCA), and turf algae with coverages similar to those found in the coral reefs (17.4-18.8% hard coral, 3.5-26.3% CCA, and 15-15.5% turf algae, respectively), while the higher temperature marine lakes (31-32 °C and >32 °C) did not harbor hard coral or CCA. Benthic composition in the reefs was significantly influenced by geographic distance among sites but not by human activity or depth. Benthic composition in the marine lakes appeared to be structured by temperature, salinity, and degree of connection to the adjacent sea. Our results suggest that beyond a certain temperature (>31 °C), benthic communities shift away from coral dominance, but new outcomes of assemblages can be highly distinct, with a possible varied dominance of macroalgae, benthic cyanobacterial mats, or filter feeders such as bivalves and tubeworms. This study illustrates the possible use of marine lake model systems to gain insight into shifts in the benthic community structure of tropical coastal ecosystems if hard corals are no longer dominant.
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Affiliation(s)
- Ludi Parwadani Aji
- Wageningen University and Research, Wageningen, The Netherlands
- Naturalis Biodiversity Center, Leiden, The Netherlands
- Research Center for Oceanography, National Research and Innovation Agency, Jakarta, Indonesia
| | | | | | | | | | - Leontine Elisabeth Becking
- Wageningen University and Research, Wageningen, The Netherlands
- Naturalis Biodiversity Center, Leiden, The Netherlands
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11
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Cissell EC, McCoy SJ. Convergent photophysiology and prokaryotic assemblage structure in epilithic cyanobacterial tufts and algal turf communities. JOURNAL OF PHYCOLOGY 2024; 60:343-362. [PMID: 38240472 DOI: 10.1111/jpy.13424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 10/14/2023] [Accepted: 11/30/2023] [Indexed: 04/11/2024]
Abstract
As global change spurs shifts in benthic community composition on coral reefs globally, a better understanding of the defining taxonomic and functional features that differentiate proliferating benthic taxa is needed to predict functional trajectories of reef degradation better. This is especially critical for algal groups, which feature dramatically on changing reefs. Limited attention has been given to characterizing the features that differentiate tufting epilithic cyanobacterial communities from ubiquitous turf algal assemblages. Here, we integrated an in situ assessment of photosynthetic yield with metabarcoding and shotgun metagenomic sequencing to explore photophysiology and prokaryotic assemblage structure within epilithic tufting benthic cyanobacterial communities and epilithic algal turf communities. Significant differences were not detected in the average quantum yield. However, variability in yield was significantly higher in cyanobacterial tufts. Neither prokaryotic assemblage diversity nor structure significantly differed between these functional groups. The sampled cyanobacterial tufts, predominantly built by Okeania sp., were co-dominated by members of the Proteobacteria, Firmicutes, and Bacteroidota, as were turf algal communities. Few detected ASVs were significantly differentially abundant between functional groups and consisted exclusively of taxa belonging to the phyla Proteobacteria and Firmicutes. Assessment of the distribution of recovered cyanobacterial amplicons demonstrated that alongside sample-specific cyanobacterial diversification, the dominant cyanobacterial members were conserved across tufting cyanobacterial and turf algal communities. Overall, these data suggest a convergence in taxonomic identity and mean photosynthetic potential between tufting epilithic cyanobacterial communities and algal turf communities, with numerous implications for consumer-resource dynamics on future reefs and trajectories of reef functional ecology.
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Affiliation(s)
- Ethan C Cissell
- Department of Biology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
| | - Sophie J McCoy
- Department of Biology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
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12
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Kim MS, Lee YH, Lee Y, Jeong H, Wang M, Wang DZ, Lee JS. Multigenerational effects of elevated temperature on host-microbiota interactions in the marine water flea Diaphanosoma celebensis exposed to micro- and nanoplastics. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:132877. [PMID: 38016313 DOI: 10.1016/j.jhazmat.2023.132877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Revised: 10/09/2023] [Accepted: 10/26/2023] [Indexed: 11/30/2023]
Abstract
Rising ocean temperatures are driving unprecedented changes in global marine ecosystems. Meanwhile, there is growing concern about microplastic and nanoplastic (MNP) contamination, which can endanger marine organisms. Increasing ocean warming (OW) and plastic pollution inevitably cause marine organisms to interact with MNPs, but relevant studies remain sparse. Here, we investigated the interplay between ocean warming and MNP in the marine water flea Diaphanosoma celebensis. We found that combined exposure to MNPs and OW induced reproductive failure in the F2 generation. In particular, the combined effects of OW and MNPs on the F2 generation were associated with key genes related to reproduction and stress response. Moreover, populations of predatory bacteria were significantly larger under OW and MNP conditions during F2 generations, suggesting a potential link between altered microbiota and host fitness. These results were supported by a host transcriptome and microbiota interaction analysis. This research sheds light on the complex interplay between environmental stressors, their multigenerational effects on marine organisms, and the function of the microbiome.
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Affiliation(s)
- Min-Sub Kim
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Young Hwan Lee
- Department of Marine Ecology and Environment, College of Life Sciences, Gangneung-Wonju National University, Gangneung 25457, South Korea
| | - Yoseop Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Haksoo Jeong
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea
| | - Minghua Wang
- Fujian Provincial Key Laboratory for Coastal Ecology and Environmental Studies/College of the Environment & Ecology, Xiamen University, Xiamen 361102, China
| | - Da-Zhi Wang
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen 361102, China
| | - Jae-Seong Lee
- Department of Biological Sciences, College of Science, Sungkyunkwan University, Suwon 16419, South Korea.
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13
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Chen J, Xiao Q, Xu D, Li Z, Chao L, Li X, Liu H, Wang P, Zheng Y, Liu X, Qu H, Bao Y. Soil microbial community composition and co-occurrence network responses to mild and severe disturbances in volcanic areas. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 901:165889. [PMID: 37524180 DOI: 10.1016/j.scitotenv.2023.165889] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 07/27/2023] [Accepted: 07/27/2023] [Indexed: 08/02/2023]
Abstract
Soil physicochemical properties and vegetation types are the main factors affecting soil microorganisms, but there are few studies on the effects of the disturbance following volcanic eruption. To make up for this lack of knowledge, we used Illumina Miseq high-throughput sequencing to study the characteristics of soil microorganisms on both shores of a volcanically disturbed lake. Soil microorganisms in the two sites were subjected to different degrees of volcanic disturbance and showed significant heterogeneity. Mild volcanic disturbance area had higher enrichment of prokaryotic community. Co-occurrence network analysis showed that a total of 12 keystone taxa (9 prokaryotes and 3 fungi) were identified, suggesting that soil prokaryote may play a more significant role than fungi in overall community structure and function. Compared with severe volcanic disturbance area, the soil microbial community in mild volcanic disturbance area had the higher modular network (0.327 vs 0.291). The competition was stronger (positive/negative link ratio, P/N: 1.422 vs 1.159). Random forest analysis showed that soil superoxide dismutase was the most significant variable associated with soil microbial community. Structural equation model (SEM) results showed that keystone had a directly positive effect on prokaryotic (λ = 0.867, P < 0.001) and fungal (λ = 0.990, P < 0.001) multifunctionality while had also a directly positive effect on fungal diversity (λ = 0.553, P < 0.001), suggesting that keystone taxa played a key role in maintaining ecosystem stability. These results were important for understanding the effects of different levels of volcanic disturbance on soil ecosystems.
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Affiliation(s)
- Jin Chen
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China; National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei 230036, PR China
| | - Qingchen Xiao
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei 230036, PR China
| | - Daolong Xu
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, PR China
| | - Zishan Li
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei 230036, PR China
| | - Lumeng Chao
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China
| | - Xiaoyu Li
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei 230036, PR China
| | - Haijing Liu
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China
| | - Pengfei Wang
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China
| | - Yaxin Zheng
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China
| | - Xinyan Liu
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China
| | - Hanting Qu
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China
| | - Yuying Bao
- Key Laboratory of Forage and Endemic Crop Biotechnology, Ministry of Education, School of Life Sciences, Inner Mongolia University, Hohhot 010010, PR China.
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14
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Wang T, Zhang P, Molinos JG, Xie J, Zhang H, Wang H, Xu X, Wang K, Feng M, Cheng H, Zhang M, Xu J. Interactions between climate warming, herbicides, and eutrophication in the aquatic food web. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 345:118753. [PMID: 37625285 DOI: 10.1016/j.jenvman.2023.118753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 07/16/2023] [Accepted: 08/09/2023] [Indexed: 08/27/2023]
Abstract
Understanding the interactive effects of multiple environmental stressors on biological communities is crucial for effective environmental management and biodiversity conservation. Here, we present the results of an outdoor mesocosm experiment examining how an aquatic food web responds to the individual and combined effects of climate warming, heat waves, nutrient enrichment, and herbicide exposure. To assess ecosystem functioning, we examined energy flow, using stable isotope analysis integrated with the bioenergetics food web approach to quantify energy fluxes among trophic levels. Our results revealed that the combined effects of these stressors altered the pattern of energy fluxes within the food web. Under warming conditions, there was an increase in energy flux from producers and primary consumers to secondary consumers. However, we did not observe a significant increase in energy flux in primary consumers, potentially due to enhanced top-down control. Nutrient enrichment increased energy flux from producers to higher trophic levels while simultaneously decreasing detrital energy flux. Herbicide exposure did not significantly affect herbivory energy flux but did reduce detritivory energy flux, particularly from detritus to primary consumers. The interactive effects we observed were primarily antagonistic or additive, although we also detected reversed and synergistic effects. The responses to multiple stressors varied across different energy flow pathways, leading to an asymmetric response. Furthermore, our results also revealed significant differences in the effects of constant warming and heat waves, either alone or in combination with water pollution. The asymmetric response of energy flow pathways and the prevalence of antagonistic effects present significant challenges for ecosystem restoration. Together, our findings provide novel and clear evidence of the complex mechanisms by which the coexistence of stressors can differently affect the pathways of energy flux across trophic levels in aquatic ecosystems. Regulatory strategies for ecosystems should comprehensively consider responses at multi-trophic levels using a network perspective, especially in the face of combinations of global and local stressors.
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Affiliation(s)
- Tao Wang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China; University of Chinese Academy of Sciences, Beijing, PR China.
| | - Peiyu Zhang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China.
| | | | - Jiayi Xie
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China; University of Chinese Academy of Sciences, Beijing, PR China.
| | - Huan Zhang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China.
| | - Huan Wang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China; State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, PR China.
| | - Xiaoqi Xu
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China.
| | - Kang Wang
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China; University of Chinese Academy of Sciences, Beijing, PR China.
| | - Mingjun Feng
- College of Fisheries, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Centre of Hubei Province, Huazhong Agricultural University, Wuhan, PR China.
| | - Haowu Cheng
- College of Fisheries, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Centre of Hubei Province, Huazhong Agricultural University, Wuhan, PR China.
| | - Min Zhang
- College of Fisheries, Hubei Provincial Engineering Laboratory for Pond Aquaculture, Freshwater Aquaculture Collaborative Innovation Centre of Hubei Province, Huazhong Agricultural University, Wuhan, PR China.
| | - Jun Xu
- Donghu Experimental Station of Lake Ecosystems, State Key Laboratory of Freshwater Ecology and Biotechnology of China, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, PR China.
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15
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Sim ZY, Goh KC, He Y, Gin KYH. Present and future potential role of toxin-producing Synechococcus in the tropical region. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 896:165230. [PMID: 37400026 DOI: 10.1016/j.scitotenv.2023.165230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 06/27/2023] [Accepted: 06/28/2023] [Indexed: 07/05/2023]
Abstract
As anthropogenic induced temperature rises and nutrient loadings increase in fresh and brackish environments, the ecological function of the phytoplankton community is expected to favour the picocyanobacteria, of the genus Synechococcus. Synechococcus is already a ubiquitous cyanobacterium found in both freshwater and marine environments, notwithstanding that the toxigenic species still remains unexplored in many freshwaters. Their fast growth rate and their ability to produce toxins make Synechococcus a potential dominant player in harmful algal blooms under climate change scenarios. This study examines the responses of a novel toxin-producing Synechococcus (i.e., one belonging to a freshwater clade; the other belonging to a brackish clade) to environmental changes that reflect climate change effects. We conducted a series of controlled experiments under present and predicted future temperatures, as well as under various N and P nutrients loadings. Our findings highlight how Synechococcus can be altered by the differing reactions to increasing temperature and nutrients, which resulted in considerable variations in cell abundance, growth rate, death rate, cellular stoichiometry and toxin production. Synechococcus had the highest growth observed at 28 °C, and further increases in temperature resulted in a decline for both fresh and brackish waters. Cellular stoichiometry was also altered, where more nitrogen (N) per cell was required, and the plasticity of N:P was more severe for the brackish clade. However, Synechococcus become more toxic under future scenario. Anatoxin-a (ATX) saw the greatest spike when temperature was at 34 °C especially under P-enrichment conditions. In contrast, Cylindrospermopsin (CYN) was promoted at the lowest tested temperature (25 °C) and under N-limitation. Overall, both temperature and external nutrients are the dominant control over Synechococcus toxins production. A model was also created to assess Synechococcus toxicity to zooplankton grazing. Zooplankton grazing was reduced by two folds under nutrient limitation, but temperature accounted for very insignificant change.
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Affiliation(s)
- Zhi Yang Sim
- National University of Singapore Environmental Research Institute, National University of Singapore, 1 Create Way, #15-02, Singapore 138602, Singapore
| | - Kwan Chien Goh
- National University of Singapore Environmental Research Institute, National University of Singapore, 1 Create Way, #15-02, Singapore 138602, Singapore
| | - Yiliang He
- National University of Singapore Center for Eco-Environment Research, Nanjing Hydraulic Research Institute, Nanjing 210098, China
| | - K Y H Gin
- National University of Singapore Environmental Research Institute, National University of Singapore, 1 Create Way, #15-02, Singapore 138602, Singapore; Department of Civil and Environmental Engineering, National University of Singapore, Blk E1A-07-03, 1 Engineering Drive 2, Singapore 117576, Singapore.
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16
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Hallam J, Harris NC. What's going to be on the menu with global environmental changes? GLOBAL CHANGE BIOLOGY 2023; 29:5744-5759. [PMID: 37458101 DOI: 10.1111/gcb.16866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Accepted: 05/13/2023] [Indexed: 07/18/2023]
Abstract
Ongoing anthropogenic change is altering the planet at an unprecedented rate, threatening biodiversity, and ecosystem functioning. Species are responding to abiotic pressures at both individual and population levels, with changes affecting trophic interactions through consumptive pathways. Collectively, these impacts alter the goods and services that natural ecosystems will provide to society, as well as the persistence of all species. Here, we describe the physiological and behavioral responses of species to global changes on individual and population levels that result in detectable changes in diet across terrestrial and marine ecosystems. We illustrate shifts in the dynamics of food webs with implications for animal communities. Additionally, we highlight the myriad of tools available for researchers to investigate the dynamics of consumption patterns and trophic interactions, arguing that diet data are a crucial component of ecological studies on global change. We suggest that a holistic approach integrating the complexities of diet choice and trophic interactions with environmental drivers may be more robust at resolving trends in biodiversity, predicting food web responses, and potentially identifying early warning signs of diversity loss. Ultimately, despite the growing body of long-term ecological datasets, there remains a dearth of diet ecology studies across temporal scales, a shortcoming that must be resolved to elucidate vulnerabilities to changing biophysical conditions.
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Affiliation(s)
- Jane Hallam
- Applied Wildlife Ecology Lab, Yale School of the Environment, Yale University, New Haven, Connecticut, USA
| | - Nyeema C Harris
- Applied Wildlife Ecology Lab, Yale School of the Environment, Yale University, New Haven, Connecticut, USA
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17
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Garzke J, Forster I, Graham C, Costalago D, Hunt BPV. Future climate change-related decreases in food quality may affect juvenile Chinook salmon growth and survival. MARINE ENVIRONMENTAL RESEARCH 2023; 191:106171. [PMID: 37716280 DOI: 10.1016/j.marenvres.2023.106171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 09/02/2023] [Accepted: 09/05/2023] [Indexed: 09/18/2023]
Abstract
Global climate change is projected to raise global temperatures by 3.3-5.7 °C by 2100, resulting in changes in species composition, abundance, and nutritional quality of organisms at the base of the marine food web. Predicted increases in prey availability and reductions in prey nutritional quality under climate warming in certain marine systems are expected to impact higher trophic levels, such as fish and humans. There is limited knowledge of the interplay between food quantity and quality under warming, specifically when food availability is high, but quality is low. Here, we conducted an experiment assessing the effects of food quality (fatty acid composition and ratios) on juvenile Chinook salmon's (Oncorhynchus tshawytscha) body and nutritional condition, specifically focusing on RNA:DNA ratio, Fulton's K, growth, mortality and their fatty acid composition. Experimental diets represented three different climate change scenarios with 1) a present-day diet (Euphausia pacifica), 2) a control diet (commercial aquaculture diet), and 3) a predicted Intergovernmental Panel on Climate Change (IPCC) worst-case scenario diet with low essential fatty acid concentrations (IPCC SSP5-8.5). We tested how growth rates, RNA:DNA ratio, Fulton's K index, fatty acid composition and mortality rates in juvenile Chinook salmon compared across diet treatments. Fatty acids were incorporated into the salmon muscle at varying rates but, on average, reflected dietary concentrations. High dietary concentrations of DHA, EPA and high DHA:EPA ratios, under the control and present-day diets, increased fish growth and condition. In contrast, low concentrations of DHA and EPA and low DHA:EPA ratios in the diets under climate change scenario were not compensated for by increased food quantity. This result highlights the importance of considering food quality when assessing fish response to changing ocean conditions.
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Affiliation(s)
- Jessica Garzke
- Institute for the Oceans and Fisheries, University of British Columbia, AERL, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada.
| | - Ian Forster
- Pacific Science Enterprise Center, Fisheries and Oceans Canada, 4160 Marine Dr., West Vancouver, BC V7V 1N6, Canada
| | - Caroline Graham
- Institute for the Oceans and Fisheries, University of British Columbia, AERL, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada
| | - David Costalago
- Institute for the Oceans and Fisheries, University of British Columbia, AERL, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada
| | - Brian P V Hunt
- Institute for the Oceans and Fisheries, University of British Columbia, AERL, 2202 Main Mall, Vancouver, BC, V6T 1Z4, Canada; Department of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2020-2207 Main Mall, Vancouver, BC, V6T 1Z4, Canada; Hakai Institute, PO Box 309, Heriot Bay, BC, V0P 1H0, Canada
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18
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An L, Yan YC, Tian HL, Chi CQ, Nie Y, Wu XL. Roles of sulfate-reducing bacteria in sustaining the diversity and stability of marine bacterial community. Front Microbiol 2023; 14:1218828. [PMID: 37637129 PMCID: PMC10448053 DOI: 10.3389/fmicb.2023.1218828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 07/25/2023] [Indexed: 08/29/2023] Open
Abstract
Microbes play central roles in ocean food webs and global biogeochemical processes. Yet, the information available regarding the highly diverse bacterial communities in these systems is not comprehensive. Here we investigated the diversity, assembly process, and species coexistence frequency of bacterial communities in seawater and sediment across ∼600 km of the eastern Chinese marginal seas using 16S rRNA gene amplicon sequencing. Our analyses showed that compared with seawater, bacterial communities in sediment possessed higher diversity and experienced tight phylogenetic distribution. Neutral model analysis showed that the relative contribution of stochastic processes to the assembly process of bacterial communities in sediment was lower than that in seawater. Functional prediction results showed that sulfate-reducing bacteria (SRB) were enriched in the core bacterial sub-communities. The bacterial diversities of both sediment and seawater were positively associated with the relative abundance of SRB. Co-occurrence analysis showed that bacteria in seawater exhibited a more complex interaction network and closer co-occurrence relationships than those in sediment. The SRB of seawater were centrally located in the network and played an essential role in sustaining the complex network. In addition, further analysis indicated that the SRB of seawater helped maintain the high stability of the bacterial network. Overall, this study provided further comprehensive information regarding the characteristics of bacterial communities in the ocean, and provides new insights into keystone taxa and their roles in sustaining microbial diversity and stability in ocean.
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Affiliation(s)
- Liyun An
- College of Architecture and Environment, Sichuan University, Chengdu, China
| | - Ying-Chun Yan
- College of Architecture and Environment, Sichuan University, Chengdu, China
| | - Hai-Long Tian
- College of Agriculture, Henan University, Kaifeng, China
| | - Chang-Qiao Chi
- College of Engineering, Peking University, Beijing, China
| | - Yong Nie
- College of Engineering, Peking University, Beijing, China
| | - Xiao-Lei Wu
- College of Engineering, Peking University, Beijing, China
- Institute of Ocean Research, Peking University, Beijing, China
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19
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Eero M, Brander K, Baranova T, Krumme U, Radtke K, Behrens JW. New insights into the recent collapse of Eastern Baltic cod from historical data on stock health. PLoS One 2023; 18:e0286247. [PMID: 37228079 DOI: 10.1371/journal.pone.0286247] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Accepted: 05/12/2023] [Indexed: 05/27/2023] Open
Abstract
The Eastern Baltic cod (Gadus morhua) stock is currently in a very poor state, with low biomass and adverse trends in several life history and demographic parameters. This raises concern over whether and to what level recovery is possible. Here, we look for new insights from a historical perspective, extending the time series of various stock health indicators back to the 1940s, i.e. to the beginning of intensive exploitation of the Eastern Baltic cod. The historical data confirm that the stock deterioration in recent years is unprecedented, as all indicators are presently in their worst states on record. Cod body condition and energy reserves were equally low in the 1940s-1950s, accompanied by high parasitic liver worm infection, comparable to that measured in recent years. However, other stock parameters (size structure, size at maturity, stock distribution) are currently in their worst states over the past 80 years. In contrast, the state of cod in the 1970s to early 1990s that is often perceived as a desirable target, was exceptional, with the most favorable indicator levels in the time series. Long-term observation data reveal concurrent or asynchronous trends in different indicators of stock health and to what extent these have coincided with changes in possible external drivers. In this way, the extended time series contribute to ongoing research on understanding the collapse of the cod and its recovery potential.
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Affiliation(s)
- Margit Eero
- National Institute for Aquatic Resources, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Keith Brander
- National Institute for Aquatic Resources, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Tatjana Baranova
- Institute of Food Safety, Animal Health and Environment "BIOR", Riga, Latvia
| | - Uwe Krumme
- Thünen Institute of Baltic Sea Fisheries, Rostock, Germany
| | | | - Jane W Behrens
- National Institute for Aquatic Resources, Technical University of Denmark, Kgs. Lyngby, Denmark
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20
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Crichton KA, Wilson JD, Ridgwell A, Boscolo-Galazzo F, John EH, Wade BS, Pearson PN. What the geological past can tell us about the future of the ocean's twilight zone. Nat Commun 2023; 14:2376. [PMID: 37105972 PMCID: PMC10140295 DOI: 10.1038/s41467-023-37781-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 03/30/2023] [Indexed: 04/29/2023] Open
Abstract
Paleontological reconstructions of plankton community structure during warm periods of the Cenozoic (last 66 million years) reveal that deep-dwelling 'twilight zone' (200-1000 m) plankton were less abundant and diverse, and lived much closer to the surface, than in colder, more recent climates. We suggest that this is a consequence of temperature's role in controlling the rate that sinking organic matter is broken down and metabolized by bacteria, a process that occurs faster at warmer temperatures. In a warmer ocean, a smaller fraction of organic matter reaches the ocean interior, affecting food supply and dissolved oxygen availability at depth. Using an Earth system model that has been evaluated against paleo observations, we illustrate how anthropogenic warming may impact future carbon cycling and twilight zone ecology. Our findings suggest that significant changes are already underway, and without strong emissions mitigation, widespread ecological disruption in the twilight zone is likely by 2100, with effects spanning millennia thereafter.
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Affiliation(s)
- Katherine A Crichton
- School of Earth and Environmental Science, Cardiff University, Cardiff, UK.
- Now at Department of Geography, University of Exeter, Exeter, UK.
| | - Jamie D Wilson
- School of Earth Sciences, University of Bristol, Bristol, UK
- Department of Earth, Ocean and Ecological Sciences, University of Liverpool, Liverpool, UK
| | - Andy Ridgwell
- Department of Earth and Planetary Sciences, University of California, Riverside, CA, USA
| | - Flavia Boscolo-Galazzo
- School of Earth and Environmental Science, Cardiff University, Cardiff, UK
- Now at MARUM, University of Bremen, Bremen, Germany
| | - Eleanor H John
- School of Earth and Environmental Science, Cardiff University, Cardiff, UK
| | - Bridget S Wade
- Department of Earth Sciences, University College London, London, UK
| | - Paul N Pearson
- School of Earth and Environmental Science, Cardiff University, Cardiff, UK
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21
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Anjaneyan P, Kuttippurath J, Hareesh Kumar PV, Ali SM, Raman M. Spatio-temporal changes of winter and spring phytoplankton blooms in Arabian sea during the period 1997-2020. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 332:117435. [PMID: 36746044 DOI: 10.1016/j.jenvman.2023.117435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Revised: 01/18/2023] [Accepted: 01/31/2023] [Indexed: 06/18/2023]
Abstract
Arabian Sea (AS) experiences Chlorophyll-a (Chl-a) blooms during winter and early spring (November-March) mainly due to the changes induced by seasonally reversing monsoon winds and associated processes. The seasonal blooms exhibit distinct regional patterns in their onset, duration, intensity and peak period. Recent changes in ocean dynamics and plankton composition have inflicted adverse effects in the distribution of Chl-a concentration in AS. Here, we analyse the long-term spatio-temporal changes in winter and early spring bloom events during the period 1997-2020, and evaluate the role of sea surface temperature (SST), mixed layer depth (MLD), sea surface salinity, winds, mesoscale eddies and surface currents on these bloom occurrences. We observe a significant reduction in these blooms, which started in the early 2000s and intensified in the last decade (2010-2020), with a notable drop in the adjacent gulfs (Gulf of Aden: 1.38 ± 0.7 × 10-5 mg m-3 yr-1, Gulf of Oman: 4.71 ± 1.35 × 10-6 mg m-3 yr-1) and West coast of India (-6.71 ± 2.85 × 10-6 mg m-3 yr-1). The MLD and ocean temperature are the major factors that govern bloom in Gulf of Oman and open waters. Conversely, the coastal upwelling and eddies drive blooms in Gulf of Aden. The winter cooling trigger the bloom in the northern Indian west coast, but the inter-basin exchange of surface waters through the West Indian Coastal Current inhibits its southward spread. This study, therefore, reveals unique processes that initiate and control the winter and early spring blooms in different regions of AS. The ongoing warming of AS could contribute to further decline in these seasonal blooms, which would be a great concern for regional marine productivity and associated regional food security.
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Affiliation(s)
- P Anjaneyan
- CORAL, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - J Kuttippurath
- CORAL, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
| | - P V Hareesh Kumar
- Naval Physical Oceanographic Laboratory, DRDO, Thrikkakara, Kochi, 682021, India
| | - S M Ali
- CORAL, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India; Space Applications Centre, Ahmedabad, 380015, India
| | - Mini Raman
- Space Applications Centre, Ahmedabad, 380015, India
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22
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Wolfe K, Desbiens AA, Mumby PJ. Emigration patterns of motile cryptofauna and their implications for trophic functioning in coral reefs. Ecol Evol 2023; 13:e9960. [PMID: 37006892 PMCID: PMC10049886 DOI: 10.1002/ece3.9960] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/07/2023] [Accepted: 03/15/2023] [Indexed: 03/30/2023] Open
Abstract
Patterns of movement of marine species can reflect strategies of reproduction and dispersal, species' interactions, trophodynamics, and susceptibility to change, and thus critically inform how we manage populations and ecosystems. On coral reefs, the density and diversity of metazoan taxa are greatest in dead coral and rubble, which are suggested to fuel food webs from the bottom up. Yet, biomass and secondary productivity in rubble is predominantly available in some of the smallest individuals, limiting how accessible this energy is to higher trophic levels. We address the bioavailability of motile coral reef cryptofauna based on small-scale patterns of emigration in rubble. We deployed modified RUbble Biodiversity Samplers (RUBS) and emergence traps in a shallow rubble patch at Heron Island, Great Barrier Reef, to detect community-level differences in the directional influx of motile cryptofauna under five habitat accessibility regimes. The mean density (0.13-4.5 ind cm-3) and biomass (0.14-5.2 mg cm-3) of cryptofauna were high and varied depending on microhabitat accessibility. Emergent zooplankton represented a distinct community (dominated by the Appendicularia and Calanoida) with the lowest density and biomass, indicating constraints on nocturnal resource availability. Mean cryptofauna density and biomass were greatest when interstitial access within rubble was blocked, driven by the rapid proliferation of small harpacticoid copepods from the rubble surface, leading to trophic simplification. Individuals with high biomass (e.g., decapods, gobies, and echinoderms) were greatest when interstitial access within rubble was unrestricted. Treatments with a closed rubble surface did not differ from those completely open, suggesting that top-down predation does not diminish rubble-derived resources. Our results show that conspecific cues and species' interactions (e.g., competition and predation) within rubble are most critical in shaping ecological outcomes within the cryptobiome. These findings have implications for prey accessibility through trophic and community size structuring in rubble, which may become increasingly relevant as benthic reef complexity shifts in the Anthropocene.
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Affiliation(s)
- Kennedy Wolfe
- Marine Spatial Ecology Lab, School of Biological Sciences and ARC Centre of Excellence for Coral Reef StudiesUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Amelia A. Desbiens
- Marine Spatial Ecology Lab, School of Biological Sciences and ARC Centre of Excellence for Coral Reef StudiesUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Peter J. Mumby
- Marine Spatial Ecology Lab, School of Biological Sciences and ARC Centre of Excellence for Coral Reef StudiesUniversity of QueenslandBrisbaneQueensland4072Australia
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23
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van Moorsel SJ, Thébault E, Radchuk V, Narwani A, Montoya JM, Dakos V, Holmes M, De Laender F, Pennekamp F. Predicting effects of multiple interacting global change drivers across trophic levels. GLOBAL CHANGE BIOLOGY 2023; 29:1223-1238. [PMID: 36461630 PMCID: PMC7614140 DOI: 10.1111/gcb.16548] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 11/18/2022] [Accepted: 11/23/2022] [Indexed: 05/26/2023]
Abstract
Global change encompasses many co-occurring anthropogenic drivers, which can act synergistically or antagonistically on ecological systems. Predicting how different global change drivers simultaneously contribute to observed biodiversity change is a key challenge for ecology and conservation. However, we lack the mechanistic understanding of how multiple global change drivers influence the vital rates of multiple interacting species. We propose that reaction norms, the relationships between a driver and vital rates like growth, mortality, and consumption, provide insights to the underlying mechanisms of community responses to multiple drivers. Understanding how multiple drivers interact to affect demographic rates using a reaction-norm perspective can improve our ability to make predictions of interactions at higher levels of organization-that is, community and food web. Building on the framework of consumer-resource interactions and widely studied thermal performance curves, we illustrate how joint driver impacts can be scaled up from the population to the community level. A simple proof-of-concept model demonstrates how reaction norms of vital rates predict the prevalence of driver interactions at the community level. A literature search suggests that our proposed approach is not yet used in multiple driver research. We outline how realistic response surfaces (i.e., multidimensional reaction norms) can be inferred by parametric and nonparametric approaches. Response surfaces have the potential to strengthen our understanding of how multiple drivers affect communities as well as improve our ability to predict when interactive effects emerge, two of the major challenges of ecology today.
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Affiliation(s)
- Sofia J. van Moorsel
- Department of Evolutionary Biology and Environmental StudiesUniversity of ZurichZurichSwitzerland
- Department of GeographyUniversity of ZurichZurichSwitzerland
| | - Elisa Thébault
- Sorbonne Université, CNRS, IRD, INRAE, Université Paris Est Créteil, Université Paris Cité, Institute of Ecology and Environmental Sciences of Paris (iEES‐Paris)ParisFrance
| | - Viktoriia Radchuk
- Department of Ecological DynamicsLeibniz Institute for Zoo and Wildlife ResearchBerlinGermany
| | - Anita Narwani
- Department of Aquatic EcologyEawagDübendorfSwitzerland
| | - José M. Montoya
- Theoretical and Experimental Ecology StationCNRSMoulisFrance
| | - Vasilis Dakos
- Institut des Sciences de l'Evolution de Montpellier (ISEM)Université de Montpellier, IRD, EPHEMontpellierFrance
| | - Mark Holmes
- Namur Institute for Complex Systems (naXys), Institute of Life, Earth, and Environment (ILEE), Research Unit in Environmental and Evolutionary Biology, University of NamurNamurBelgium
| | - Frederik De Laender
- Namur Institute for Complex Systems (naXys), Institute of Life, Earth, and Environment (ILEE), Research Unit in Environmental and Evolutionary Biology, University of NamurNamurBelgium
| | - Frank Pennekamp
- Department of Evolutionary Biology and Environmental StudiesUniversity of ZurichZurichSwitzerland
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24
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Jackson PJ, Hitchcock A, Brindley AA, Dickman MJ, Hunter CN. Absolute quantification of cellular levels of photosynthesis-related proteins in Synechocystis sp. PCC 6803. PHOTOSYNTHESIS RESEARCH 2023; 155:219-245. [PMID: 36542271 PMCID: PMC9958174 DOI: 10.1007/s11120-022-00990-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 11/24/2022] [Indexed: 06/17/2023]
Abstract
Quantifying cellular components is a basic and important step for understanding how a cell works, how it responds to environmental changes, and for re-engineering cells to produce valuable metabolites and increased biomass. We quantified proteins in the model cyanobacterium Synechocystis sp. PCC 6803 given the general importance of cyanobacteria for global photosynthesis, for synthetic biology and biotechnology research, and their ancestral relationship to the chloroplasts of plants. Four mass spectrometry methods were used to quantify cellular components involved in the biosynthesis of chlorophyll, carotenoid and bilin pigments, membrane assembly, the light reactions of photosynthesis, fixation of carbon dioxide and nitrogen, and hydrogen and sulfur metabolism. Components of biosynthetic pathways, such as those for chlorophyll or for photosystem II assembly, range between 1000 and 10,000 copies per cell, but can be tenfold higher for CO2 fixation enzymes. The most abundant subunits are those for photosystem I, with around 100,000 copies per cell, approximately 2 to fivefold higher than for photosystem II and ATP synthase, and 5-20 fold more than for the cytochrome b6f complex. Disparities between numbers of pathway enzymes, between components of electron transfer chains, and between subunits within complexes indicate possible control points for biosynthetic processes, bioenergetic reactions and for the assembly of multisubunit complexes.
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Affiliation(s)
- Philip J Jackson
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK.
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, S1 3JD, UK.
| | - Andrew Hitchcock
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK
| | - Amanda A Brindley
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK
| | - Mark J Dickman
- Department of Chemical and Biological Engineering, University of Sheffield, Sheffield, S1 3JD, UK
| | - C Neil Hunter
- Plants, Photosynthesis and Soil, School of Biosciences, University of Sheffield, Sheffield, S10 2TN, UK
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25
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Yang Y, Chai Y, Xie H, Zhang L, Zhang Z, Yang X, Hao S, Gai J, Chen Y. Responses of soil microbial diversity, network complexity and multifunctionality to three land-use changes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 859:160255. [PMID: 36402341 DOI: 10.1016/j.scitotenv.2022.160255] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 11/08/2022] [Accepted: 11/14/2022] [Indexed: 06/16/2023]
Abstract
Land-use change is one of the greatest challenges for natural ecosystem services. Soil microbiomes are essential for modulating multiple ecosystem functions. However, little is known about the impact of land-use changes on soil microbial communities and their associated soil functions. In this study, 150 alpine soil samples representing conversion of forests to shrublands or grasslands, and of shrublands to grasslands were investigated for bacterial, fungal and protistan community diversity, co-occurrence network, as well as their relationships with soil multifunctionality via a sampling strategy of space-for-time substitution. The conversion of forest to grassland increased the diversity of fungi and bacteria, and altered the microbial community structures of bacteria, fungi and protists, resulting a greater impact on soil microbiome than other land-use conversions. Cross-trophic interaction analyses demonstrated this conversion increased microbial network complexity and robustness, whereas forest to shrubland had the opposite trend. The land-use induced changes in soil multifunctionality were related with microbial network modules, but were not always associated with variations of microbial diversity. Random forest modeling further suggested the significant role of microbial modules in explaining soil multifunctionality, together with environmental factors. These findings indicate divergent responses of belowground multitrophic organisms to land-use changes, and the potential role of microbial module in forecasting soil multifunctionality.
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Affiliation(s)
- Yi Yang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Yabo Chai
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Hanjie Xie
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Lu Zhang
- State Key laboratory Urban & Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Zhiming Zhang
- School of Ecology and Environmental Sciences, Yunnan Key Laboratory for Plateau Mountain Ecology and Restoration of Degraded Environments, Yunnan University, Kunming 650091, Yunnan, China
| | - Xue Yang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Shenglei Hao
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Jingping Gai
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China.
| | - Yongliang Chen
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China.
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26
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Amadori M, Solonin SV, Vodorezov AV, Shell R, Niedźwiedzki R, Kriwet J. The extinct shark, Ptychodus (Elasmobranchii, Ptychodontidae) in the Upper Cretaceous of central-western Russia-The road to easternmost peri-Tethyan seas. JOURNAL OF VERTEBRATE PALEONTOLOGY 2023; 42:e2162909. [PMID: 37559798 PMCID: PMC7614918 DOI: 10.1080/02724634.2022.2162909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 10/28/2022] [Accepted: 11/17/2022] [Indexed: 08/11/2023]
Abstract
Isolated teeth belonging to the genus Ptychodus Agassiz, 1834 (Chondrichthyes; Elasmobranchii) from the Upper Cretaceous of the Ryazan and Moscow Oblast regions (European Russia) are described and discussed in detail herein. The taxonomic composition of the Ptychodus assemblage from the Ryazan region is very diverse including the first records of the cuspidate species P. altior and P. anonymus, which thus is largely consistent with those from other contemporaneous European localities. Ptychodus ubiquitously inhabited epicontinental seas of Europe during most of the Cretaceous with the most diverse assemblages coming from southern England, northern Italy, Belgium, and European Russia. Additionally, the material documented here from the Cenomanian of Varavinsky ravine area (Moscow Oblast) represents the northernmost occurrence of Ptychodus hitherto reported from Europe. It is evident that the Late Cretaceous shallow seas of the Russian platform represented a crucial pathway for the dispersal of Ptychodus from the European peri-Tethys to the eastern margins of the Neo-Tethyan Ocean. The Albian-Campanian records of Ptychodus from Europe indicate that its dominance in the peri-Tethys persisted for most of its evolutionary history. A local temperature drop across most of the European shallow seas probably contributed to the narrowing of its geographic range in the peri-Tethyan seas towards the end of the Mesozoic Era. The fossil remains of Ptychodus documented herein are accordingly of utmost importance for better understanding the taxonomic composition of Russian fossil ichthyofaunas and also inform about the dispersal of Ptychodus towards western and eastern peri-Tethyan seas during the Late Cretaceous.
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Affiliation(s)
- Manuel Amadori
- University of Vienna, Department of Palaeontology, UZAII, Geozentrum, Josef-Holaubek-Platz 2, Vienna, 1090, Austria
| | - Sergey V. Solonin
- Department of Geography, Ecology and Natural Management, Ryazan State University named for S. Yesenin, Ryazan, 390000, Russia
| | - Alexey V. Vodorezov
- Department of Geography, Ecology and Natural Management, Ryazan State University named for S. Yesenin, Ryazan, 390000, Russia
| | - Ryan Shell
- Department of Vertebrate Paleontology, Cincinnati Museum Center, Cincinnati, 45203, U.S.A
| | - Robert Niedźwiedzki
- Institute of Geological Sciences, University of Wrocław, Wrocław, 50-204, Poland
| | - Jürgen Kriwet
- University of Vienna, Department of Palaeontology, UZAII, Geozentrum, Josef-Holaubek-Platz 2, Vienna, 1090, Austria
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27
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Polazzo F, Hermann M, Crettaz-Minaglia M, Rico A. Impacts of extreme climatic events on trophic network complexity and multidimensional stability. Ecology 2023; 104:e3951. [PMID: 36484732 PMCID: PMC10078413 DOI: 10.1002/ecy.3951] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 09/27/2022] [Accepted: 11/07/2022] [Indexed: 12/14/2022]
Abstract
Untangling the relationship between network complexity and ecological stability under climate change is an arduous challenge for theoretical and empirical ecology. Even more so, when considering extreme climatic events. Here, we studied the effects of extreme climatic events (heatwaves) on the complexity of realistic freshwater ecosystems using topological and quantitative trophic network metrics. Next, we linked changes in network complexity with the investigation of four stability components (temporal stability, resistance, resilience, and recovery) of community's functional, compositional, and energy flux stability. We found reduction in topological network complexity to be correlated with reduction of functional and compositional resistance. However, temperature-driven increase in link-weighted network complexity increased functional and energy flux recovery and resilience, but at the cost of increased compositional instability. Overall, we propose an overarching approach to elucidate the effects of climate change on multidimensional stability through the lens of network complexity, providing helpful insights for preserving ecosystems stability under climate change.
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Affiliation(s)
- Francesco Polazzo
- IMDEA Water Institute, Science and Technology Campus of the University of Alcalá, Madrid, Spain
| | - Markus Hermann
- Aquatic Ecology and Water Quality Management Group, Wageningen University, Wageningen, The Netherlands
| | - Melina Crettaz-Minaglia
- IMDEA Water Institute, Science and Technology Campus of the University of Alcalá, Madrid, Spain
| | - Andreu Rico
- IMDEA Water Institute, Science and Technology Campus of the University of Alcalá, Madrid, Spain.,Cavanilles Institute of Biodiversity and Evolutionary Biology, University of Valencia, Valencia, Spain
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28
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Gibert JP, Wieczynski DJ, Han Z, Yammine A. Rapid eco-phenotypic feedback and the temperature response of biomass dynamics. Ecol Evol 2023; 13:e9685. [PMID: 36644704 PMCID: PMC9831973 DOI: 10.1002/ece3.9685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 11/16/2022] [Accepted: 11/18/2022] [Indexed: 01/13/2023] Open
Abstract
Biomass dynamics capture information on population dynamics and ecosystem-level processes (e.g., changes in production over time). Understanding how rising temperatures associated with global climate change influence biomass dynamics is thus a pressing issue in ecology. The total biomass of a species depends on its density and its average mass. Consequently, disentangling how biomass dynamics responds to increasingly warm and variable temperatures ultimately depends on understanding how temperature influences both density and mass dynamics. Here, we address this issue by keeping track of experimental microbial populations growing to carrying capacity for 15 days at two different temperatures, and in the presence and absence of temperature variability. We develop a simple mathematical expression to partition the contribution of changes in density and mass to changes in biomass and assess how temperature responses in either one influence biomass shifts. Moreover, we use time-series analysis (Convergent Cross Mapping) to address how temperature and temperature variability influence reciprocal effects of density on mass and vice versa. We show that temperature influences biomass through its effects on density and mass dynamics, which have opposite effects on biomass and can offset each other. We also show that temperature variability influences biomass, but that effect is independent of any effects on density or mass dynamics. Last, we show that reciprocal effects of density and mass shift significantly across temperature regimes, suggesting that rapid and environment-dependent eco-phenotypic dynamics underlie biomass responses. Overall, our results connect temperature effects on population and phenotypic dynamics to explain how biomass responds to temperature regimes, thus shedding light on processes at play in cosmopolitan and abundant microbes as the world experiences increasingly warm and variable temperatures.
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Affiliation(s)
- Jean P. Gibert
- Department of BiologyDuke UniversityDurhamNorth CarolinaUSA
| | | | - Ze‐Yi Han
- Department of BiologyDuke UniversityDurhamNorth CarolinaUSA
| | - Andrea Yammine
- Department of BiologyDuke UniversityDurhamNorth CarolinaUSA
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29
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Mellin C, Hicks CC, Fordham DA, Golden CD, Kjellevold M, MacNeil MA, Maire E, Mangubhai S, Mouillot D, Nash KL, Omukoto JO, Robinson JPW, Stuart-Smith RD, Zamborain-Mason J, Edgar GJ, Graham NAJ. Safeguarding nutrients from coral reefs under climate change. Nat Ecol Evol 2022; 6:1808-1817. [PMID: 36192542 DOI: 10.1038/s41559-022-01878-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Accepted: 07/14/2022] [Indexed: 12/15/2022]
Abstract
The sustainability of coral reef fisheries is jeopardized by complex and interacting socio-ecological stressors that undermine their contribution to food and nutrition security. Climate change has emerged as one of the key stressors threatening coral reefs and their fish-associated services. How fish nutrient concentrations respond to warming oceans remains unclear but these responses are probably affected by both direct (metabolism and trophodynamics) and indirect (habitat and species range shifts) effects. Climate-driven coral habitat loss can cause changes in fish abundance and biomass, revealing potential winners and losers among major fisheries targets that can be predicted using ecological indicators and biological traits. A critical next step is to extend research focused on the quantity of available food (fish biomass) to also consider its nutritional quality, which is relevant to progress in the fields of food security and malnutrition. Biological traits are robust predictors of fish nutrient content and thus potentially indicate how climate-driven changes are expected to impact nutrient availability within future food webs on coral reefs. Here, we outline future research priorities and an anticipatory framework towards sustainable reef fisheries contributing to nutrition-sensitive food systems in a warming ocean.
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Affiliation(s)
- Camille Mellin
- The Environment Institute and School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia.
| | | | - Damien A Fordham
- The Environment Institute and School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Christopher D Golden
- Department of Nutrition, Harvard T. H. Chan School of Public Health, Boston, MA, USA
| | | | - M Aaron MacNeil
- Ocean Frontier Institute, Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Eva Maire
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | | | - David Mouillot
- MARBEC, University of Montpellier, CNRS, IFREMER, IRD, MARBEC, Montpellier, France
| | - Kirsty L Nash
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
- Centre for Marine Socioecology, University of Tasmania, Hobart, Tasmania, Australia
| | - Johnstone O Omukoto
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
- Kenya Marine and Fisheries Research Institute, Mombasa, Kenya
| | | | - Rick D Stuart-Smith
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
| | - Jessica Zamborain-Mason
- Department of Nutrition, Harvard T. H. Chan School of Public Health, Boston, MA, USA
- ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, Australia
- College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
| | - Graham J Edgar
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
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30
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Sinha S, Adhurya S, Banerjee A, Al Basir F, Das S, Ray S. Dynamic simulation and steady-state analysis of a bentho-pelagic coupled ecosystem under different simulation scenarios. ECOL INFORM 2022. [DOI: 10.1016/j.ecoinf.2022.101929] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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31
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Tebbett SB, Streit RP, Morais J, Schlaefer JA, Swan S, Bellwood DR. Benthic cyanobacterial mat formation during severe coral bleaching at Lizard Island: The mediating role of water currents. MARINE ENVIRONMENTAL RESEARCH 2022; 181:105752. [PMID: 36115331 DOI: 10.1016/j.marenvres.2022.105752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Revised: 09/04/2022] [Accepted: 09/06/2022] [Indexed: 06/15/2023]
Abstract
Cyanobacterial mats are increasingly recognised as a symptom of coral reef change. However, the spatial distribution of cyanobacterial mats during coral bleaching has received limited attention. We explored cyanobacterial mat distribution during a bleaching event at Lizard Island and considered hydrodynamics as a potential modifier. During bleaching cyanobacterial mats covered up to 34% of the benthos at a transect scale, while some quadrats (1 m2) were covered almost entirely (97.5%). The spatial distribution of cyanobacterial mats was limited to areas with slower water currents. Coral cover declined by 44% overall, although cyanobacterial mats were not spatially coupled to the magnitude of coral loss. Overall, the marked increase in cyanobacterial mat cover was an ephemeral spike, not a sustained change, with cover returning to 0.4% within 6 months. Cyanobacterial mats clearly represent dynamic space holders on coral reefs, with a marked capacity to rapidly exploit change, if conditions are right.
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Affiliation(s)
- Sterling B Tebbett
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, 4811, Australia.
| | - Robert P Streit
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, 4811, Australia
| | - Juliano Morais
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, 4811, Australia
| | - Jodie A Schlaefer
- Commonwealth Scientific and Industrial Research Organisation (CSIRO), Oceans and Atmosphere, Hobart, Tasmania, 7000, Australia
| | - Sam Swan
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, 4811, Australia
| | - David R Bellwood
- Research Hub for Coral Reef Ecosystem Functions, College of Science and Engineering, ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Queensland, 4811, Australia
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Vesal SE, Auriemma R, Libralato S, Nasi F, Negro PD. Impacts of organic enrichment on macrobenthic production, productivity, and transfer efficiency: What can we learn from a gradient of sewage effluents? MARINE POLLUTION BULLETIN 2022; 182:113972. [PMID: 35907359 DOI: 10.1016/j.marpolbul.2022.113972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 07/17/2022] [Accepted: 07/19/2022] [Indexed: 06/15/2023]
Abstract
We studied the macrobenthic invertebrate biomass (B), production (P), productivity (P/B̅-ratio), and transfer efficiency (TE) influenced by sewage effluents discharge in a diffusion zone. Our results indicated a clear distribution pattern of macrofauna communities along the sewage discharge gradient where biological factors (B, P, P/B̅, and TE) were driven by changes observed in community structure, composition, and the influence of environmental variables. The lowest B, P, and P/B̅ were observed at the stations sampled close to the pipelines. Abundance, biomass, production, and productivity increased with increasing distance from the pipelines toward stations placed at 100 m distance and then decreased toward the stations placed at >200 m, where there was a negative relationship between TE and B of macrofauna at sampling stations. Overall, there was a clear influence of the sewage discharge on macrofauna communities, but surrounding environment was influenced moderately by organic impact and discharges had no negative impacts.
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Affiliation(s)
- Seyed Ehsan Vesal
- National Institute of Oceanography and Applied Geophysics - OGS, via A. Piccard 54, I-34151 Trieste, Italy; Department of Life Sciences, University of Trieste, 34127 Trieste, Italy.
| | - Rocco Auriemma
- National Institute of Oceanography and Applied Geophysics - OGS, via A. Piccard 54, I-34151 Trieste, Italy
| | - Simone Libralato
- National Institute of Oceanography and Applied Geophysics - OGS, via A. Piccard 54, I-34151 Trieste, Italy
| | - Federica Nasi
- National Institute of Oceanography and Applied Geophysics - OGS, via A. Piccard 54, I-34151 Trieste, Italy
| | - Paola Del Negro
- National Institute of Oceanography and Applied Geophysics - OGS, via A. Piccard 54, I-34151 Trieste, Italy
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Net effect of environmental fluctuations in multiple global-change drivers across the tree of life. Proc Natl Acad Sci U S A 2022; 119:e2205495119. [PMID: 35914141 PMCID: PMC9371701 DOI: 10.1073/pnas.2205495119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Jensen's inequality predicts that the response of any given system to average constant conditions is different from its average response to varying ones. Environmental fluctuations in abiotic conditions are pervasive on Earth; yet until recently, most ecological research has addressed the effects of multiple environmental drivers by assuming constant conditions. One could thus expect to find significant deviations in the magnitude of their effects on ecosystems when environmental fluctuations are considered. Drawing on experimental studies published during the last 30 years reporting more than 950 response ratios (n = 5,700), we present a comprehensive analysis of the role that environmental fluctuations play across the tree of life. In contrast to the predominance of interactive effects of global-change drivers reported in the literature, our results show that their cumulative effects were additive (58%), synergistic (26%), and antagonistic (16%) when environmental fluctuations were present. However, the dominant type of interaction varied by trophic level (autotrophs: interactive; heterotrophs: additive) and phylogenetic group (additive in Animalia; additive and positive antagonism in Chromista; negative antagonism and synergism in Plantae). In addition, we identify the need to tackle how complex communities respond to fluctuating environments, widening the phylogenetic and biogeographic ranges considered, and to consider other drivers beyond warming and acidification as well as longer timescales. Environmental fluctuations must be taken into account in experimental and modeling studies as well as conservation plans to better predict the nature, magnitude, and direction of the impacts of global change on organisms and ecosystems.
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Jackson R, Gabric A. Climate Change Impacts on the Marine Cycling of Biogenic Sulfur: A Review. Microorganisms 2022; 10:1581. [PMID: 36013999 PMCID: PMC9412504 DOI: 10.3390/microorganisms10081581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 08/02/2022] [Accepted: 08/02/2022] [Indexed: 11/16/2022] Open
Abstract
A key component of the marine sulfur cycle is the climate-active gas dimethylsulfide (DMS), which is synthesized by a range of organisms from phytoplankton to corals, and accounts for up to 80% of global biogenic sulfur emissions. The DMS cycle starts with the intracellular synthesis of the non-gaseous precursor dimethylsulfoniopropionate (DMSP), which is released to the water column by various food web processes such as zooplankton grazing. This dissolved DMSP pool is rapidly turned over by microbially mediated conversion using two known pathways: demethylation (releasing methanethiol) and cleavage (producing DMS). Some of the formed DMS is ventilated to the atmosphere, where it undergoes rapid oxidation and contributes to the formation of sulfate aerosols, with the potential to affect cloud microphysics, and thus the regional climate. The marine phase cycling of DMS is complex, however, as heterotrophs also contribute to the consumption of the newly formed dissolved DMS. Interestingly, due to microbial consumption and other water column sinks such as photolysis, the amount of DMS that enters the atmosphere is currently thought to be a relatively minor fraction of the total amount cycled through the marine food web-less than 10%. These microbial processes are mediated by water column temperature, but the response of marine microbial assemblages to ocean warming is poorly characterized, although bacterial degradation appears to increase with an increase in temperature. This review will focus on the potential impact of climate change on the key microbially mediated processes in the marine cycling of DMS. It is likely that the impact will vary across different biogeographical regions from polar to tropical. For example, in the rapidly warming polar oceans, microbial communities associated with the DMS cycle will likely change dramatically during the 21st century with the decline in sea ice. At lower latitudes, where corals form an important source of DMS (P), shifts in the microbiome composition have been observed during thermal stress with the potential to alter the DMS cycle.
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Affiliation(s)
- Rebecca Jackson
- Coasts and Ocean Research, Oceans and Atmosphere, CSIRO, Canberra, ACT 2601, Australia
| | - Albert Gabric
- School of Environment and Science, Griffith University, Nathan, QLD 4111, Australia
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Xu S, Lyu P, Zheng X, Yang H, Xia B, Li H, Zhang H, Ma S. Monitoring and control methods of harmful algal blooms in Chinese freshwater system: a review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:56908-56927. [PMID: 35708805 DOI: 10.1007/s11356-022-21382-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Accepted: 06/06/2022] [Indexed: 06/15/2023]
Abstract
Harmful algal blooms (HABs) are a worldwide problem with substantial adverse effects on the aquatic environment as well as human health, which have prompted researchers to study measures to stem and control them. Meanwhile, it is key to research and develop monitoring methods to establish early warning HABs. However, both the current monitoring methods and control methods have some shortcomings, making the field application limited. Thus, we need to improve current approaches for monitoring and controlling HABs efficiently. Based on the freshwater system features in China, we review various monitoring and control methods of HABs, summarize and discuss the problems with these methods, and propose the future development direction of monitoring and control HABs. Finally, we envision that it can combine physical, chemical, and biological methods to inhibit HAB expansion in the future, complementing each other with advantages. Further, we promise to establish a long-term strategy of controlling HABs with various algicidal bacteria co-cultivate for field applications in China. Efforts in studying algicidal bacteria must be increased to better control HABs and mitigate the risks of aquatic ecosystems and human health in China.
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Affiliation(s)
- Shengjun Xu
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Ping Lyu
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Xiaoxu Zheng
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Haijun Yang
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
| | - Bing Xia
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
| | - Hui Li
- Shenzhen BLY Landscape & Architecture Planning & Design Institute, Shenzhen, 518055, China
| | - Hao Zhang
- South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, 510301, China
| | - Shuanglong Ma
- College of Resources and Environmental Sciences, Henan Agricultural University, Zhengzhou, 450002, China.
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Hu N, Bourdeau PE, Harlos C, Liu Y, Hollander J. Meta-analysis reveals variance in tolerance to climate change across marine trophic levels. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 827:154244. [PMID: 35245550 DOI: 10.1016/j.scitotenv.2022.154244] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 02/23/2022] [Accepted: 02/26/2022] [Indexed: 06/14/2023]
Abstract
Marine ecosystems are currently facing a variety of anthropogenic perturbations, including climate change. Trophic differences in response to climate change may disrupt ecological interactions and thereby threaten marine ecosystem function. Yet, we still do not have a comprehensive understanding of how different trophic levels respond to climate change stressors in marine ecosystems. By including 1278 experiments, comprising 236 different marine species from 18 different phyla in a meta-analysis of studies measuring the direct effect of ocean acidification and ocean warming on marine organisms, we found that higher trophic level species display greater tolerance to ocean acidification but greater sensitivity to warming. In contrast, marine herbivores were the most vulnerable trophic level to both acidification and warming. Such imbalances in the community and a general reduction of biodiversity and biomass in lower trophic levels can significantly disrupt the system and could drive negative bottom-up effects. In conclusion, with ocean acidification and elevated temperatures, there is an alarming risk that trophic disparity may disrupt species interactions, and thereby drive community destabilization under ocean climate change.
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Affiliation(s)
- Nan Hu
- Department of Biology- Aquatic ecology, Lund University, Lund, Sweden
| | - Paul E Bourdeau
- Department of Biological Sciences, Humboldt State University, Arcata, CA, USA
| | - Christian Harlos
- Department of Biology- Aquatic ecology, Lund University, Lund, Sweden
| | - Ying Liu
- Department of Biology- Aquatic ecology, Lund University, Lund, Sweden; Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming 650504, China
| | - Johan Hollander
- Sasakawa Global Ocean Institute, World Maritime University, Malmö, Sweden.
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Affiliation(s)
| | - John M. Grady
- National Great Rivers Research and Education Center, East Alton IL USA
| | - Anthony I. Dell
- National Great Rivers Research and Education Center, East Alton IL USA
- Department of Biology Washington University in St Louis St Louis MO USA
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38
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Szalaj D, Silva A, Ré P, Cabral H. Predictions of sardine and the Portuguese continental shelf ecosystem dynamics under future fishing, forced-biomass and SST scenarios. MARINE POLLUTION BULLETIN 2022; 178:113594. [PMID: 35398691 DOI: 10.1016/j.marpolbul.2022.113594] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 03/09/2022] [Accepted: 03/19/2022] [Indexed: 06/14/2023]
Abstract
We used the Ecopath with Ecosim ecosystem model to assess the future effects of multiple stressors on sardine and the Portuguese continental shelf ecosystem. We assessed individual and combined impacts of changes in sardine fishing pressure, biomass of sardine competitors and predators and sea surface temperature (SST). This study demonstrated that the greatest impact on sardine stock is caused by projected SST rise whose effect is dominant and detrimental to sardine stock regardless of other conditions, including sardine fishing at maximum sustainable yield (FMSY). The largest impact on ecosystem stability, maturity and diversity of flows was observed under the forced-biomass scenarios that simulate changes in biomass of sardine predators and competitors. Moreover, these stressors alongside FMSY are projected to play an important role in the future evolution of the sardine stock. Results presented in this study can assist long-term and strategic management of the Iberian sardine stock.
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Affiliation(s)
- D Szalaj
- Marine and Environmental Sciences Centre (MARE), Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal; Instituto Português do Mar e da Atmosfera (IPMA), Rua Alfredo Magalhães Ramalho, 6, 1495-006 Lisboa, Portugal; Instituto Dom Luiz (IDL), Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.
| | - A Silva
- Marine and Environmental Sciences Centre (MARE), Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal; Instituto Português do Mar e da Atmosfera (IPMA), Rua Alfredo Magalhães Ramalho, 6, 1495-006 Lisboa, Portugal
| | - P Ré
- Marine and Environmental Sciences Centre (MARE), Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal
| | - H Cabral
- INRAE, UR EABX, Centre Nouvelle-Aquitaine Bordeaux 50, Avenue de Verdun, 33612 Cestas, France
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Huertas MJ, Mallén‐Ponce MJ. Dark side of cyanobacteria: searching for strategies to control blooms. Microb Biotechnol 2022; 15:1321-1323. [PMID: 34843641 PMCID: PMC9049600 DOI: 10.1111/1751-7915.13982] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
Cyanobacteria are ecologically one of the most prolific groups of photosynthetic prokaryotes in marine and freshwater habitats. They are primary producer microorganisms and are involved in the production of important secondary metabolites, including toxic compounds such as cyanotoxins. Environmental conditions promote massive growth of these microbes, causing blooms that can have critical ecological and public health implications. In this highlight, we discuss some of the approaches being addressed to prevent these blooms, such as control of nutrient loading, treatments to minimize growth or monitoring interactions with other species.
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Affiliation(s)
- María José Huertas
- Departamento de Bioquímica Vegetal y Biología MolecularFacultad de BiologíaUniversidad de SevillaProfesor García González s/nSevilla41012Spain
- Instituto de Bioquímica Vegetal y FotosíntesisUniversidad de Sevilla‐CSICAmérico Vespucio 49Sevilla41092Spain
| | - Manuel J. Mallén‐Ponce
- Instituto de Bioquímica Vegetal y FotosíntesisUniversidad de Sevilla‐CSICAmérico Vespucio 49Sevilla41092Spain
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40
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Leung JYS, Nagelkerken I, Pistevos JCA, Xie Z, Zhang S, Connell SD. Shark teeth can resist ocean acidification. GLOBAL CHANGE BIOLOGY 2022; 28:2286-2295. [PMID: 35023266 DOI: 10.1111/gcb.16052] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 10/12/2021] [Accepted: 10/12/2021] [Indexed: 06/14/2023]
Abstract
Ocean acidification can cause dissolution of calcium carbonate minerals in biological structures of many marine organisms, which can be exacerbated by warming. However, it is still unclear whether this also affects organisms that have body parts made of calcium phosphate minerals (e.g. shark teeth), which may also be impacted by the 'corrosive' effect of acidified seawater. Thus, we examined the effect of ocean acidification and warming on the mechanical properties of shark teeth (Port Jackson shark, Heterodontus portusjacksoni), and assessed whether their mineralogical properties can be modified in response to predicted near-future seawater pH (-0.3 units) and temperature (+3°C) changes. We found that warming resulted in the production of more brittle teeth (higher elastic modulus and lower mechanical resilience) that were more vulnerable to physical damage. Yet, when combined with ocean acidification, the durability of teeth increased (i.e. less prone to physical damage due to the production of more elastic teeth) so that they did not differ from those raised under ambient conditions. The teeth were chiefly made of fluorapatite (Ca5 (PO4 )3 F), with increased fluoride content under ocean acidification that was associated with increased crystallinity. The increased precipitation of this highly insoluble mineral under ocean acidification suggests that the sharks could modulate and enhance biomineralization to produce teeth which are more resistant to corrosion. This adaptive mineralogical adjustment could allow some shark species to maintain durability and functionality of their teeth, which underpins a fundamental component of predation and sustenance of the trophic dynamics of future oceans.
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Affiliation(s)
- Jonathan Y S Leung
- Centre for Advanced Thin Films and Devices, School of Materials and Energy, Southwest University, Chongqing, PR China
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, South Australia, Australia
| | - Ivan Nagelkerken
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, South Australia, Australia
| | - Jennifer C A Pistevos
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, South Australia, Australia
- PSL Research University EPHE-UPVD-CNRS, USR 3278 CRIOBE, Moorea, French Polynesia
| | - Zonghan Xie
- School of Mechanical Engineering, The University of Adelaide, South Australia, Australia
| | - Sam Zhang
- Centre for Advanced Thin Films and Devices, School of Materials and Energy, Southwest University, Chongqing, PR China
| | - Sean D Connell
- Southern Seas Ecology Laboratories, School of Biological Sciences, The University of Adelaide, South Australia, Australia
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41
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Inácio M, Karnauskaitė D, Gomes E, Barceló D, Pereira P. Mapping and assessment of future changes in the coastal and marine ecosystem services supply in Lithuania. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 812:152586. [PMID: 34954181 DOI: 10.1016/j.scitotenv.2021.152586] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 12/17/2021] [Accepted: 12/17/2021] [Indexed: 06/14/2023]
Abstract
Assessing and mapping ecosystem services (ES) became an integral part of coastal and marine management practices. Hence, quantitative and validated approaches are lacking, especially to address future conditions. The objective of this study is to apply further existing and develop new methodological frameworks to quantitatively assess and map the current and future supply of 3 ES in the coastal zone of Lithuania: coastal flood protection, nutrient regulation, and maintenance of nursery conditions. For coastal flood ES modelling, 2 time periods (1990 and 2018) and 4 scenarios (A0, A1 A2, A3 - based on future socio-economic changes in Lithuania) were analysed. The coastal flood protection ES model was validated (r2 = 0.30) using tree cover density. The results showed spatial differences among the analysed periods but no statistical differences. High supply areas are located in the southern coastal area, while the central part displays a low supply. For nutrient regulation and maintenance of nursery conditions, 7 time periods were analysed: a historical period and 6 scenarios based on Representative Concentration Pathway 4.5 and 8.5 and 3 Shared Socioeconomic Pathways. The nutrient regulation ES model was validated (r2 = 0.85) using in situ nutrient. Statistical differences were observed for this ES, but a similar spatial distribution of high and low supply areas. A decrease in the supply was observed comparing the historical period and future scenarios. Maintenance of nursery conditions was validated (r2 = 0.72) based on the protection status of the coastal zone. Results show no statistical differences and similar spatial patterns among the periods. Rocky and sandbank areas show a high supply for this ES. Limitations of our work are mainly related to the resolution of the utilised indicators. Nevertheless, the information obtained from our models can support spatial planning and decision-making processes.
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Affiliation(s)
- Miguel Inácio
- Environmental Management Laboratory, Mykolas Romeris University, Vilnius, Lithuania.
| | - Donalda Karnauskaitė
- Environmental Management Laboratory, Mykolas Romeris University, Vilnius, Lithuania
| | - Eduardo Gomes
- Environmental Management Laboratory, Mykolas Romeris University, Vilnius, Lithuania; Centre for Geographical Studies, Institute of Geography and Spatial Planning, University of Lisbon, Lisbon, Portugal
| | - Damià Barceló
- Institute of Environmental Assessment and Water Research (IDAEA-CSIC), Barcelona, Catalonia, Spain; Catalan Institute for Water Research (ICRA-CERCA), Girona, Catalonia, Spain
| | - Paulo Pereira
- Environmental Management Laboratory, Mykolas Romeris University, Vilnius, Lithuania
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Tan K, Zhang H, Zheng H. Climate change and n-3 LC-PUFA availability. Prog Lipid Res 2022; 86:101161. [PMID: 35301036 DOI: 10.1016/j.plipres.2022.101161] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Revised: 03/08/2022] [Accepted: 03/10/2022] [Indexed: 10/18/2022]
Abstract
Omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) are essential fatty acids for the growth, development and survival of virtually all organisms. There is increasing evidence that anthropogenic climate change has a direct and indirect impact on the availability of natural n-3 LC-PUFA. However, this information is fragmented and not well organized. Therefore, this article reviewed published data from laboratory experiments, field experiments and model simulations to reveal the impact of climate change on the global supply of natural n-3 LC-PUFA and how this will limit the availability of n-3 LC-PUFA in the future food web. In general, climate change can significantly reduce the availability of natural n-3 LC-PUFA in grazing food webs in the following ways: 1) decrease the total biomass of phytoplankton and shift the plankton community structure to a smaller size, which also reduce the biomass of animals in higher trophics; 2) reduce the n-3 LC-PUFA content and/or quality (n-3: n-6 ratio) of all marine organisms; 3) reduce the transfer efficiency of n-3 LC-PUFA in grazing food web. In addition, as an anthropogenic climate adaptation measure, this review also proposed some alternative sources of n-3 LC-PUFA and determined the direction of future research. The information in this article is very useful for providing a critical analysis of the impact of climate change on the supply of natural n-3 LC-PUFA. Such information will aid to establish climate adaptation or management measures, and determine the direction of future research.
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Affiliation(s)
- Karsoon Tan
- Key Laboratory of Marine Biotechnology of Guangdong Province, Marine Sciences Institute, Shantou University, Shantou 515063, China; Mariculture Research Center for Subtropical Shellfish & Algae of Guangdong Province, Shantou 515063, China; STU-UMT Joint Shellfish Research Laboratory, Shantou University, Shantou 515063, China.
| | - Hongkuan Zhang
- Key Laboratory of Marine Biotechnology of Guangdong Province, Marine Sciences Institute, Shantou University, Shantou 515063, China; Mariculture Research Center for Subtropical Shellfish & Algae of Guangdong Province, Shantou 515063, China; STU-UMT Joint Shellfish Research Laboratory, Shantou University, Shantou 515063, China
| | - Huaiping Zheng
- Key Laboratory of Marine Biotechnology of Guangdong Province, Marine Sciences Institute, Shantou University, Shantou 515063, China; Mariculture Research Center for Subtropical Shellfish & Algae of Guangdong Province, Shantou 515063, China; STU-UMT Joint Shellfish Research Laboratory, Shantou University, Shantou 515063, China.
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Changes in trophic structure of an exploited fish community at the centennial scale are linked to fisheries and climate forces. Sci Rep 2022; 12:4309. [PMID: 35279693 PMCID: PMC8918348 DOI: 10.1038/s41598-022-08391-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Accepted: 03/04/2022] [Indexed: 11/08/2022] Open
Abstract
Understanding how marine food webs are affected by anthropogenic stressors is an important steppingstone toward the improved management of natural resources. Stable isotope analysis of historical and modern samples spanning a century indicated that the niche width of an exploited fish community increased after the expansion of New Zealand fisheries. Since the 2000s most species increased their reliance on food webs supported by pelagic production, compared to coastal production supported by macroalgae, and shifted to a higher trophic level. Overall changes were coincident with ocean warming, climate oscillations, prey abundance and fishing intensity, but their effects were specific to each fish assemblage analyzed. Data derived from historical samples revealed how anthropogenic stressors can drive long-term shifts in the trophic structure of an exploited fish community.
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Jabbur ML, Johnson CH. Spectres of Clock Evolution: Past, Present, and Yet to Come. Front Physiol 2022; 12:815847. [PMID: 35222066 PMCID: PMC8874327 DOI: 10.3389/fphys.2021.815847] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Accepted: 12/22/2021] [Indexed: 01/20/2023] Open
Abstract
Circadian clocks are phylogenetically widespread biological oscillators that allow organisms to entrain to environmental cycles and use their steady-state phase relationship to anticipate predictable daily phenomena – such as the light-dark transitions of a day – and prepare accordingly. Present from cyanobacteria to mammals, circadian clocks are evolutionarily ancient and are thought to increase the fitness of the organisms that possess them by allowing for better resource usage and/or proper internal temporal order. Here, we review literature with respect to the ecology and evolution of circadian clocks, with a special focus on cyanobacteria as model organisms. We first discuss what can be inferred about future clock evolution in response to climate change, based on data from latitudinal clines and domestication. We then address our current understanding of the role that circadian clocks might be contributing to the adaptive fitness of cyanobacteria at the present time. Lastly, we discuss what is currently known about the oldest known circadian clock, and the early Earth conditions that could have led to its evolution.
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Pierella Karlusich JJ, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, de Vargas C, Bowler C. A robust approach to estimate relative phytoplankton cell abundances from metagenomes. Mol Ecol Resour 2022; 23:16-40. [PMID: 35108459 PMCID: PMC10078663 DOI: 10.1111/1755-0998.13592] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 01/09/2022] [Accepted: 01/25/2022] [Indexed: 11/28/2022]
Abstract
Phytoplankton account for >45% of global primary production, and have an enormous impact on aquatic food webs and on the entire Earth System. Their members are found among prokaryotes (cyanobacteria) and multiple eukaryotic lineages containing chloroplasts. Genetic surveys of phytoplankton communities generally consist of PCR amplification of bacterial (16S), nuclear (18S) and/or chloroplastic (16S) rRNA marker genes from DNA extracted from environmental samples. However, our appreciation of phytoplankton abundance or biomass is limited by PCR-amplification biases, rRNA gene copy number variations across taxa, and the fact that rRNA genes do not provide insights into metabolic traits such as photosynthesis. Here, we targeted the photosynthetic gene psbO from metagenomes to circumvent these limitations: the method is PCR-free, and the gene is universally and exclusively present in photosynthetic prokaryotes and eukaryotes, mainly in one copy per genome. We applied and validated this new strategy with the size-fractionated marine samples collected by Tara Oceans, and showed improved correlations with flow cytometry and microscopy than when based on rRNA genes. Furthermore, we revealed unexpected features of the ecology of these ecosystems, such as the high abundance of picocyanobacterial aggregates and symbionts in the ocean, and the decrease in relative abundance of phototrophs towards the larger size classes of marine dinoflagellates. To facilitate the incorporation of psbO in molecular-based surveys, we compiled a curated database of >18,000 unique sequences. Overall, psbO appears to be a promising new gene marker for molecular-based evaluations of entire phytoplankton communities.
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Affiliation(s)
- Juan José Pierella Karlusich
- Institut de Biologie de l'ENS (IBENS), École normale supérieure, CNRS, INSERM, Université PSL, Département de biologie, 75005, Paris, France.,CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France
| | - Eric Pelletier
- CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.,Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France
| | - Lucie Zinger
- Institut de Biologie de l'ENS (IBENS), École normale supérieure, CNRS, INSERM, Université PSL, Département de biologie, 75005, Paris, France.,CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France
| | - Fabien Lombard
- CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.,Sorbonne Universités, CNRS, Laboratoire d'Océanographie de Villefranche (LOV), 06230, Villefranche-sur-Mer, France.,Institut Universitaire de France (IUF), Paris, France
| | - Adriana Zingone
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Sébastien Colin
- European Molecular Biology Laboratory, Heidelberg, Germany.,Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, ECOMAP, 29680, Roscoff, France.,Max Planck Institute for Developmental Biology, Tübingen, Germany
| | - Josep M Gasol
- Department of Marine Biology and Oceanography, Institut de Ciènces del Mar, CSIC, Barcelona, Spain
| | - Richard G Dorrell
- Institut de Biologie de l'ENS (IBENS), École normale supérieure, CNRS, INSERM, Université PSL, Département de biologie, 75005, Paris, France
| | - Nicolas Henry
- CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.,CNRS, Sorbonne Université, FR2424, ABiMS, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Eleonora Scalco
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Silvia G Acinas
- Department of Marine Biology and Oceanography, Institut de Ciènces del Mar, CSIC, Barcelona, Spain
| | - Patrick Wincker
- CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.,Génomique Métabolique, Genoscope, Institut François Jacob, CEA, CNRS, Univ Evry, Université Paris-Saclay, 91057, Evry, France
| | - Colomban de Vargas
- CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France.,Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR 7144, ECOMAP, 29680, Roscoff, France
| | - Chris Bowler
- Institut de Biologie de l'ENS (IBENS), École normale supérieure, CNRS, INSERM, Université PSL, Département de biologie, 75005, Paris, France.,CNRS Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE, 3 rue Michel-Ange, 75016, Paris, France
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Bennett S, Alcoverro T, Kletou D, Antoniou C, Boada J, Buñuel X, Cucala L, Jorda G, Kleitou P, Roca G, Santana‐Garcon J, Savva I, Vergés A, Marbà N. Resilience of seagrass populations to thermal stress does not reflect regional differences in ocean climate. THE NEW PHYTOLOGIST 2022; 233:1657-1666. [PMID: 34843111 PMCID: PMC9299911 DOI: 10.1111/nph.17885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Accepted: 11/05/2021] [Indexed: 06/13/2023]
Abstract
The prevalence of local adaptation and phenotypic plasticity among populations is critical to accurately predicting when and where climate change impacts will occur. Currently, comparisons of thermal performance between populations are untested for most marine species or overlooked by models predicting the thermal sensitivity of species to extirpation. Here we compared the ecological response and recovery of seagrass populations (Posidonia oceanica) to thermal stress throughout a year-long translocation experiment across a 2800-km gradient in ocean climate. Transplants in central and warm-edge locations experienced temperatures > 29°C, representing thermal anomalies > 5°C above long-term maxima for cool-edge populations, 1.5°C for central and < 1°C for warm-edge populations. Cool-edge, central and warm-edge populations differed in thermal performance when grown under common conditions, but patterns contrasted with expectations based on thermal geography. Cool-edge populations did not differ from warm-edge populations under common conditions and performed significantly better than central populations in growth and survival. Our findings reveal that thermal performance does not necessarily reflect the thermal geography of a species. We demonstrate that warm-edge populations can be less sensitive to thermal stress than cooler, central populations suggesting that Mediterranean seagrasses have greater resilience to warming than current paradigms suggest.
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Affiliation(s)
- Scott Bennett
- Institute for Marine and Antarctic StudiesUniversity of TasmaniaHobartTas.7001Australia
- Global Change Research GroupInstitut Mediterrani d’Estudis Avançats (CSIC‐UIB)Miquel Marquès 21Esporles07190Spain
| | - Teresa Alcoverro
- Centre d’Estudis Avançats de Blanes (CEAB‐CSIC)Carrer Accés a la Cala Sant FrancescBlanes17300Spain
| | - Demetris Kletou
- Marine & Environmental Research (MER) Laboratory Ltd202 Amathountos Avenue, Marina Gardens, Block BLimassol4533Cyprus
| | - Charalampos Antoniou
- Marine & Environmental Research (MER) Laboratory Ltd202 Amathountos Avenue, Marina Gardens, Block BLimassol4533Cyprus
| | - Jordi Boada
- Departament de Biologia Evolutiva, Ecologia i Ciències AmbientalsFacultat de BiologiaUniversitat de BarcelonaAv. Diagonal, 643Barcelona08028Spain
- Institut d’Ecologia AquàticaFacultat de CiènciesUniversitat de GironaGirona17003Spain
| | - Xavier Buñuel
- Centre d’Estudis Avançats de Blanes (CEAB‐CSIC)Carrer Accés a la Cala Sant FrancescBlanes17300Spain
| | - Lidia Cucala
- Global Change Research GroupInstitut Mediterrani d’Estudis Avançats (CSIC‐UIB)Miquel Marquès 21Esporles07190Spain
| | - Gabriel Jorda
- Instituto Español de OceanografíaCentre Oceanogràfic de BalearsMoll de Ponent s/nPalma07015Spain
| | - Periklis Kleitou
- Marine & Environmental Research (MER) Laboratory Ltd202 Amathountos Avenue, Marina Gardens, Block BLimassol4533Cyprus
- School of Biological and Marine SciencesUniversity of PlymouthPlymouthPL4 8AAUK
| | - Guillem Roca
- Global Change Research GroupInstitut Mediterrani d’Estudis Avançats (CSIC‐UIB)Miquel Marquès 21Esporles07190Spain
| | - Julia Santana‐Garcon
- Institute for Marine and Antarctic StudiesUniversity of TasmaniaHobartTas.7001Australia
- Global Change Research GroupInstitut Mediterrani d’Estudis Avançats (CSIC‐UIB)Miquel Marquès 21Esporles07190Spain
| | - Ioannis Savva
- Marine & Environmental Research (MER) Laboratory Ltd202 Amathountos Avenue, Marina Gardens, Block BLimassol4533Cyprus
| | - Adriana Vergés
- Evolution & Ecology Research CentreCentre for Marine Science and InnovationSchool of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNSW2033Australia
| | - Núria Marbà
- Global Change Research GroupInstitut Mediterrani d’Estudis Avançats (CSIC‐UIB)Miquel Marquès 21Esporles07190Spain
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Velardo F, Bouziri H, Adélaïde L, Oliosi E, Layan M, Descamps A, Berthod D, Patlán-Hernández AR, Ledrans M, Pivette M, Lefort M, Roux J, Crépey P. A cross-sectional study on infectious health risks regarding freshwater sports practice in Brittany, France. JOURNAL OF WATER AND HEALTH 2022; 20:356-368. [PMID: 36366992 DOI: 10.2166/wh.2022.232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Freshwater sports expose practitioners to pathogens in the water environment and may result in infection. In French Brittany, these infections are particularly worrying, especially since 2016 with an increase in the incidence of leptospirosis reaching 1 case per 100,000 inhabitants, which represents the highest incidence observed since 1920. We aimed to estimate the prevalence of infectious diseases related to freshwater sports practice and to identify the factors associated with these infections among freshwater sports licensees in Brittany, France. From March 18, 2019, to May 8, 2019, we interviewed freshwater sports licensees (online study) and club presidents and instructors (phone study) in Brittany. Licensee participants were 18 years old or more and practiced at least one freshwater sport in one of the 79 Brittany clubs. We used logistic regression models to study the association between our variables of interest and potential risk factors. In total, 551 licensees (20.3% of the total number of licensees) and 38 clubs (48.1%) were surveyed. Among the licensees, 29 (5.3%) reported being diagnosed with leptospirosis, of which 12 (41.3%) occurred in the last 5 years. The most reported symptoms were skin irritation/itchy skin (24.3%) and 39 individuals (7.1%) reported at least one hospitalization in their lifetime for a disease related to freshwater sports. The occurrence of leptospirosis was negatively associated with boarding from a pontoon (odds ratio (OR)=0.20, 95% confidence interval (95% CI) 0.06-0.56), practicing for less than 4 years (OR=0.17, 95% CI 0.04-0.56) compared to more than 10 years, and the occurrence of leptospirosis was positively associated with taking a soapy shower after practice (OR=4.38, 95% CI 1.90-10.51). Eskimo roll was positively associated with the occurrence of otitis and conjunctivitis (OR=3.22, 95% CI 1.82-6.03), and skin irritation/itchy skin (OR=1.66, 95% CI 0.99-2.84). Otitis, conjunctivitis, and skin irritation/itchy skin are the most commonly reported freshwater sport-related diseases in French Brittany. Despite a good level of knowledge of prevention measures, their implementation by licensees and clubs remains low. Further studies are needed to identify practices associated with infectious risk in freshwater sports.
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Affiliation(s)
- Fanny Velardo
- École Pasteur-Cnam de Santé Publique, Paris, France; These authors contributed equally
| | - Hanifa Bouziri
- Conservatoire National des Arts et Métiers, Paris, France E-mail: ; These authors contributed equally
| | - Lucie Adélaïde
- Université Paris-Saclay, UFR de Pharmacie, Châtenay-Malabry, France; These authors contributed equally
| | - Emma Oliosi
- École Pasteur-Cnam de Santé Publique, Paris, France; These authors contributed equally
| | - Maylis Layan
- Mathematical Modelling of Infectious Diseases Unit, Institut Pasteur, UMR2000, CNRS, Paris, France; Sorbonne Université, Paris, France; These authors contributed equally
| | - Alexandre Descamps
- Université de Paris, Inserm, CIC Cochin Pasteur, Assistance Publique Hôpitaux de Paris, Hôpital Cochin, Paris, France; These authors contributed equally
| | - Delphine Berthod
- Service des maladies infectieuses, Institut central des hôpitaux, Hôpital du Valais, Sion, Suisse
| | | | | | - Mathilde Pivette
- Santé Publique France, Cellule régionale Bretagne, Rennes, France
| | - Mathilde Lefort
- Université Rennes, EHESP, REPERES (Recherche en Pharmaco-Épidémiologie et Recours aux Soins)-EA 7449, Rennes, France
| | - Jonathan Roux
- Université Rennes, EHESP, REPERES (Recherche en Pharmaco-Épidémiologie et Recours aux Soins)-EA 7449, Rennes, France
| | - Pascal Crépey
- Université Rennes, EHESP, REPERES (Recherche en Pharmaco-Épidémiologie et Recours aux Soins)-EA 7449, Rennes, France; See the 34th IDEA Field Epidemiology training group in the Acknowledgements section
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Metazoan endoparasite fauna and feeding ecology of commercial fishes from Java, Indonesia. Parasitol Res 2022; 121:551-562. [PMID: 34993639 PMCID: PMC8800894 DOI: 10.1007/s00436-021-07377-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 11/08/2021] [Indexed: 11/10/2022]
Abstract
Despite being an important component of the marine ecosystem and posing health risks to human seafood consumers, fish parasites in Indonesia have yet to be adequately described. Here, we analyzed the diet and metazoan parasite fauna of seven commercial fish species (Alectis indica, Carangoides chrysophrys, Johnius borneensis, Mene maculata, Trichiurus lepturus, Upeneus asymmetricus, U. moluccensis) landed in Java, Indonesia. We isolated 11 endoparasite species, established 22 new host and 14 new locality records, and extended parasitological records of A. indica by 24%, C. chrysophrys by 25%, J. borneensis by 40%, M. maculata by 44%, U. asymmetricus by 100%, and U. moluccensis by 17%. We genetically identified the trematode Stephanostomum cf. uku (of Bray et al. 2005) from Alecta indica for the first time in Indonesia and provided the sequence of its 28S marker. Stomach content analysis revealed seven different prey items, and the examined fish species were grouped into four feeding categories, which differed significantly in their respective endoparasite fauna. All but two examined fish species hosted potentially zoonotic nematodes, which reveal a risk for parasite-borne diseases in Indonesian food fishes and call for more consequent monitoring with regard to seafood safety in this region. With this study, we were able to establish an association between the feeding ecology and the endoparasite fauna of marine fishes which will help to better understand the transmission pathways of (potentially zoonotic) parasites in food fishes in tropical waters.
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Ullah H, Fordham DA, Nagelkerken I. Climate change negates positive CO 2 effects on marine species biomass and productivity by altering the strength and direction of trophic interactions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 801:149624. [PMID: 34419906 DOI: 10.1016/j.scitotenv.2021.149624] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Revised: 08/06/2021] [Accepted: 08/09/2021] [Indexed: 06/13/2023]
Abstract
One of the biggest challenges in more accurately forecasting the effects of climate change on future food web dynamics relates to how climate change affects multi-trophic species interactions, particularly when multiple interacting stressors are considered. Using a dynamic food web model, we investigate the individual and combined effect of ocean warming and acidification on changes in trophic interaction strengths (both direct and indirect) and the consequent effects on biomass structure of food web functional groups. To do this, we mimicked a species-rich multi-trophic-level temperate shallow-water rocky reef food web and integrated empirical data from mesocosm experiments on altered species interactions under warming and acidification, into food-web models. We show that a low number of strong temperature-driven changes in direct trophic interactions (feeding and competition) will largely determine the magnitude of biomass change (either increase or decrease) of high-order consumers, with increasing consumer biomass suppressing that of prey species. Ocean acidification, in contrast, alters a large number of weak indirect interactions (e.g. cascading effects of increased or decreased abundances of other groups), enabling a large increase in consumer and prey biomass. The positive effects of ocean acidification are driven by boosted primary productivity, with energy flowing up to higher trophic levels. We show that warming is a much stronger driver of positive as well as negative modifications of species biomass compared to ocean acidification. Warming affects a much smaller number of existing trophic interactions, though, with direct consumer-resource effects being more important than indirect effects. We conclude that the functional role of consumers in future food webs will be largely regulated by alterations in the strength of direct trophic interactions under ocean warming, with ensuing effects on the biomass structure of marine food webs.
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Affiliation(s)
- Hadayet Ullah
- Southern Seas Ecology Laboratories, School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, Australia
| | - Damien A Fordham
- School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, Australia
| | - Ivan Nagelkerken
- Southern Seas Ecology Laboratories, School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, Australia; School of Biological Sciences and the Environment Institute, The University of Adelaide, Adelaide, Australia.
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Hendy IW, Woolford K, Vincent-Piper A, Burt O, Schaefer M, Cragg SM, Sanchez-Navarro P, Ragazzola F. Climate-driven golden tides are reshaping coastal communities in Quintana Roo, Mexico. CLIMATE CHANGE ECOLOGY 2021. [DOI: 10.1016/j.ecochg.2021.100033] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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