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Kutyrieva-Nowak N, Leszczuk A, Denic D, Bellaidi S, Blazakis K, Gemeliari P, Lis M, Kalaitzis P, Zdunek A. In vivo and ex vivo study on cell wall components as part of the network in tomato fruit during the ripening process. HORTICULTURE RESEARCH 2024; 11:uhae145. [PMID: 38988613 PMCID: PMC11233857 DOI: 10.1093/hr/uhae145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 05/13/2024] [Indexed: 07/12/2024]
Abstract
Ripening is a process involving various morphological, physiological, and biochemical changes in fruits. This process is affected by modifications in the cell wall structure, particularly in the composition of polysaccharides and proteins. The cell wall assembly is a network of polysaccharides and proteoglycans named the arabinoxylan pectin arabinogalactan protein1 (APAP1). The complex consists of the arabinogalactan protein (AGP) core with the pectin domain including arabinogalactan (AG) type II, homogalacturonan (HG), and rhamnogalacturonan I (RG-I). The present paper aims to determine the impact of a disturbance in the synthesis of one constituent on the integrity of the cell wall. Therefore, in the current work, we have tested the impact of modified expression of the SlP4H3 gene connected with proline hydroxylase (P4H) activity on AGP presence in the fruit matrix. Using an immunolabelling technique (CLSM), an immunogold method (TEM), molecular tools, and calcium mapping (SEM-EDS), we have demonstrated that disturbances in AGP synthesis affect the entire cell wall structure. Changes in the spatio-temporal AGP distribution may be related to the formation of a network between AGPs with other cell wall components. Moreover, the modified structure of the cell wall assembly induces morphological changes visible at the cellular level during the progression of the ripening process. These results support the hypothesis that AGPs and pectins are required for the proper progression of the physiological processes occurring in fruits.
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Affiliation(s)
| | - Agata Leszczuk
- Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin, Poland
| | - Dusan Denic
- Department of Horticultural Genetics and Biotechnology, Mediterranean Agronomic Institute of Chania, Chania 73100, Greece
| | - Samia Bellaidi
- Department of Horticultural Genetics and Biotechnology, Mediterranean Agronomic Institute of Chania, Chania 73100, Greece
| | - Konstantinos Blazakis
- Department of Horticultural Genetics and Biotechnology, Mediterranean Agronomic Institute of Chania, Chania 73100, Greece
| | - Petroula Gemeliari
- Department of Horticultural Genetics and Biotechnology, Mediterranean Agronomic Institute of Chania, Chania 73100, Greece
| | - Magdalena Lis
- Department of Biomedicine and Environmental Research, Institute of Biological Sciences, Faculty of Medicine, John Paul II Catholic University of Lublin, 20-708 Lublin, Poland
| | - Panagiotis Kalaitzis
- Department of Horticultural Genetics and Biotechnology, Mediterranean Agronomic Institute of Chania, Chania 73100, Greece
| | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, 20-290 Lublin, Poland
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2
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Su G, Lin Y, Wang C, Lu J, Liu Z, He Z, Shu X, Chen W, Wu R, Li B, Zhu C, Rose JKC, Grierson D, Giovannoni JJ, Shi Y, Chen K. Expansin SlExp1 and endoglucanase SlCel2 synergistically promote fruit softening and cell wall disassembly in tomato. THE PLANT CELL 2024; 36:709-726. [PMID: 38000892 PMCID: PMC10896287 DOI: 10.1093/plcell/koad291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 10/18/2023] [Accepted: 11/04/2023] [Indexed: 11/26/2023]
Abstract
Fruit softening, an irreversible process that occurs during fruit ripening, can lead to losses and waste during postharvest transportation and storage. Cell wall disassembly is the main factor leading to loss of fruit firmness, and several ripening-associated cell wall genes have been targeted for genetic modification, particularly pectin modifiers. However, individual knockdown of most cell wall-related genes has had minimal influence on cell wall integrity and fruit firmness, with the notable exception of pectate lyase. Compared to pectin disassembly, studies of the cell wall matrix, the xyloglucan-cellulose framework, and underlying mechanisms during fruit softening are limited. Here, a tomato (Solanum lycopersicum) fruit ripening-associated α-expansin (SlExpansin1/SlExp1) and an endoglucanase (SlCellulase2/SlCel2), which function in the cell wall matrix, were knocked out individually and together using clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated nuclease 9-mediated genome editing. Simultaneous knockout of SlExp1 and SlCel2 enhanced fruit firmness, reduced depolymerization of homogalacturonan-type pectin and xyloglucan, and increased cell adhesion. In contrast, single knockouts of either SlExp1 or SlCel2 did not substantially change fruit firmness, while simultaneous overexpression of SlExp1 and SlCel2 promoted early fruit softening. Collectively, our results demonstrate that SlExp1 and SlCel2 synergistically regulate cell wall disassembly and fruit softening in tomato.
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Affiliation(s)
- Guanqing Su
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Yifan Lin
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Chunfeng Wang
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Jiao Lu
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Zimeng Liu
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Zhiren He
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Xiu Shu
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Wenbo Chen
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Rongrong Wu
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Baijun Li
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Changqing Zhu
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Jocelyn K C Rose
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Donald Grierson
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, UK
| | - James J Giovannoni
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
- United States Department of Agriculture - Agricultural Research Service and Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY 14853, USA
| | - Yanna Shi
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
| | - Kunsong Chen
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
- The State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, China
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Hasegawa K, Ichikawa A, Takeuchi H, Nakamura A, Iwai H. Maintenance of Methyl-Esterified Pectin Level in Pollen Mother-Cell Stages Is Required for Microspore Development. PLANTS (BASEL, SWITZERLAND) 2023; 12:1717. [PMID: 37111940 PMCID: PMC10142773 DOI: 10.3390/plants12081717] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 03/30/2023] [Accepted: 04/18/2023] [Indexed: 06/19/2023]
Abstract
Pectin modification and degradation are vital for plant development, although the underlying mechanisms are still not well understood. Furthermore, reports on the function of pectin in early pollen development are limited. We generated OsPME-FOX rice lines with little methyl-esterified pectin even in the early-pollen mother-cell stage due to overexpression of the gene encoding pectin-methylesterase. Overexpression of OsPME1 in rice increased the activity of PME, which decreased the degree of pectin methyl esterification in the cell wall. OsPME1-FOX grew normally and showed abnormal phenotypes in anther and pollen development, especially in terms of the pollen mother-cell stage. In addition, we examined modifications of cell-wall polysaccharides at the cellular level using antibodies against polysaccharides. Immunohistochemical staining using LM19 and LM20 showed that methyl-esterified pectin distribution and the pectin contents in pollen mother-cell wall decreased in OsPME1-FOX compared with the wild type. Thus, the maintenance of methyl-esterified pectin plays a role in degrading and maintaining the pollen mother-cell wall during microspore development.
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Affiliation(s)
- Kazuya Hasegawa
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
- Shizuoka Prefectural Research Institute of Agriculture and Forestry, Tea Research Center, Kikugawa 439-0003, Japan
| | - Ai Ichikawa
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
| | - Haruki Takeuchi
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
| | - Atsuko Nakamura
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
| | - Hiroaki Iwai
- Institute of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
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Asakura H, Tanaka M, Tamura T, Saito Y, Yamakawa T, Abe K, Asakura T. Genes related to cell wall metabolisms are targeted by miRNAs in immature tomato fruits under drought stress. Biosci Biotechnol Biochem 2023; 87:290-302. [PMID: 36572396 DOI: 10.1093/bbb/zbac209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 12/18/2022] [Indexed: 12/28/2022]
Abstract
The metabolism of tomato fruits changes when plants experience drought stress. In this study, we investigated changes in microRNA (miRNA) abundance and detected 32 miRNAs whose expression changes in fruit. The candidate target genes for each miRNA were predicted from the differentially expressed genes identified by transcriptome analysis at the same fruit maturation stage. The predicted targeted genes were related to cell wall metabolisms, response to pathogens, and plant hormones. Among these, we focused on cell wall metabolism-related genes and performed a dual luciferase assay to assess the targeting of their mRNAs by their predicted miRNA. As a result, sly-miR10532 and sly-miR7981e suppress the expression of mRNAs of galacturonosyltransferase-10 like encoding the main enzyme of pectin biosynthesis, while sly-miR171b-5p targets β-1,3-glucosidase mRNAs involved in glucan degradation. These results will allow the systematic characterization of miRNA and their target genes in the tomato fruit under drought stress conditions.
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Affiliation(s)
- Hiroko Asakura
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, Japan
| | - Mayui Tanaka
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, Japan
| | - Tomoko Tamura
- Department of Nutritional Science and Food Safety, Faculty of Applied Bioscience, Tokyo University of Agriculture, 1-1-1, Sakuragaoka, Setagaya-ku, Tokyo, Japan
| | - Yoshikazu Saito
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, Japan
| | - Takashi Yamakawa
- Research Center for Food Safety, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, Japan
| | - Keiko Abe
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, Japan.,Kanagawa Institute of Industrial Science and Technology (KISTEC), Life Science & Environmental Research Center (LiSE), 705-1, Imaizumi, Ebina, Kanagawa, Japan
| | - Tomiko Asakura
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, Japan
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5
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Cell Wall Integrity Signaling in Fruit Ripening. Int J Mol Sci 2023; 24:ijms24044054. [PMID: 36835462 PMCID: PMC9961072 DOI: 10.3390/ijms24044054] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2022] [Revised: 02/04/2023] [Accepted: 02/15/2023] [Indexed: 02/19/2023] Open
Abstract
Plant cell walls are essential structures for plant growth and development as well as plant adaptation to environmental stresses. Thus, plants have evolved signaling mechanisms to monitor the changes in the cell wall structure, triggering compensatory changes to sustain cell wall integrity (CWI). CWI signaling can be initiated in response to environmental and developmental signals. However, while environmental stress-associated CWI signaling has been extensively studied and reviewed, less attention has been paid to CWI signaling in relation to plant growth and development under normal conditions. Fleshy fruit development and ripening is a unique process in which dramatic alternations occur in cell wall architecture. Emerging evidence suggests that CWI signaling plays a pivotal role in fruit ripening. In this review, we summarize and discuss the CWI signaling in relation to fruit ripening, which will include cell wall fragment signaling, calcium signaling, and NO signaling, as well as Receptor-Like Protein Kinase (RLKs) signaling with an emphasis on the signaling of FERONIA and THESEUS, two members of RLKs that may act as potential CWI sensors in the modulation of hormonal signal origination and transduction in fruit development and ripening.
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6
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Cheng M, Meng F, Qi H, Mo F, Wang P, Chen X, Wang A. Escaping drought: The pectin methylesterase inhibitor gene Slpmei27 can significantly change drought resistance in tomato. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 192:207-217. [PMID: 36265205 DOI: 10.1016/j.plaphy.2022.10.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 10/04/2022] [Accepted: 10/07/2022] [Indexed: 06/16/2023]
Abstract
Drought stress will lead to a decrease in tomato yield and poor flavour, yield and quality, resulting in economic losses in agricultural production. Mining the key genes regulating tomato drought resistance is of great significance to improve the drought resistance of tomato plants. The cell wall can directly participate in the plant drought stress response as one of the main components of the cell wall, and the regulation of pectin content in plant drought resistance is still unclear. Here, the candidate gene Solyc08g006690 (Slpmei27) was obtained by fine mapping based on genome sequencing technology (BSA-seq) of late-maturing stress-resistant tomato mutants found in the field. Slpmei27 is expressed in the cell wall. The transient silencing of Slpmei27 by VIGS significantly improved the drought resistance of tomato. Meanwhile, Slpmei27 silencing could significantly change the cell wall structure of plants, change the stomatal pass rate, reduce the water loss rate of plants, improve the scavenging ability of reactive oxygen species, change the redox balance in plants, and thus improve the drought resistance of tomato. The promoter region of this gene contains a large number of hormone-response and stress-response binding sites. The promoter region of the Slpmei27 gene in the mutant could lower the expression of downstream genes. Through this study, the mechanism by which Slpmei27 improves tomato drought resistance was revealed, and the relationship between pectin methyl ester metabolism and plant drought resistance was established, providing a theoretical basis for the production of high-quality tomato materials with high drought resistance.
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Affiliation(s)
- Mozhen Cheng
- College of School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin, China.
| | - Fanyue Meng
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin, China; College of Life Sciences, Northeast Agricultural University, Harbin, China.
| | - Haonan Qi
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin, China; College of Life Sciences, Northeast Agricultural University, Harbin, China.
| | - Fulei Mo
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin, China; College of Life Sciences, Northeast Agricultural University, Harbin, China.
| | - Peiwen Wang
- College of School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China; College of Life Sciences, Northeast Agricultural University, Harbin, China.
| | - Xiuling Chen
- College of School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin, China.
| | - Aoxue Wang
- College of School of Horticulture and Landscape Architecture, Northeast Agricultural University, Harbin, China; Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Northeast Region), Ministry of Agriculture, Harbin, China; College of Life Sciences, Northeast Agricultural University, Harbin, China.
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Most of the rhamnogalacturonan-I from cultured Arabidopsis cell walls is covalently linked to arabinogalactan-protein. Carbohydr Polym 2022; 301:120340. [DOI: 10.1016/j.carbpol.2022.120340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Revised: 10/16/2022] [Accepted: 11/09/2022] [Indexed: 11/16/2022]
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Faleri C, Xu X, Mareri L, Hausman JF, Cai G, Guerriero G. Immunohistochemical analyses on two distinct internodes of stinging nettle show different distribution of polysaccharides and proteins in the cell walls of bast fibers. PROTOPLASMA 2022; 259:75-90. [PMID: 33839957 PMCID: PMC8752570 DOI: 10.1007/s00709-021-01641-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 03/29/2021] [Indexed: 05/27/2023]
Abstract
Stinging nettle is a perennial herbaceous species holding value as a multi-purpose plant. Indeed, its leaves and roots are phytofactories providing functional ingredients of medicinal interest and its stems produce silky and resistant extraxylary fibers (a.k.a. bast fibers) valued in the biocomposite sector. Similarly to what is reported in other fiber crops, the stem of nettle contains both lignified and hypolignified fibers in the core and cortex, respectively, and it is therefore a useful model for cell wall research. Indeed, data on nettle stem tissues can be compared to those obtained in other models, such as hemp and flax, to support hypotheses on the differentiation and development of bast fibers. The suitability of the nettle stem as model for cell wall-related research was already validated using a transcriptomics and biochemical approach focused on internodes at different developmental stages sampled at the top, middle, and bottom of the stem. We here sought to complement and enrich these data by providing immunohistochemical and ultrastructural details on young and older stem internodes. Antibodies recognizing non-cellulosic polysaccharides (galactans, arabinans, rhamnogalacturonans) and arabinogalactan proteins were here investigated with the goal of understanding whether their distribution changes in the stem tissues in relation to the bast fiber and vascular tissue development. The results obtained indicate that the occurrence and distribution of cell wall polysaccharides and proteins differ between young and older internodes and that these changes are particularly evident in the bast fibers.
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Affiliation(s)
- Claudia Faleri
- Dipartimento Scienze della Vita, University of Siena, via Mattioli 4, Siena, Italy
| | - Xuan Xu
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), Hautcharage, Luxembourg
| | - Lavinia Mareri
- Dipartimento Scienze della Vita, University of Siena, via Mattioli 4, Siena, Italy
| | - Jean-Francois Hausman
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), Hautcharage, Luxembourg
| | - Giampiero Cai
- Dipartimento Scienze della Vita, University of Siena, via Mattioli 4, Siena, Italy.
| | - Gea Guerriero
- Environmental Research and Innovation (ERIN) Department, Luxembourg Institute of Science and Technology (LIST), Hautcharage, Luxembourg
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Xiao H, Piovesan A, Pols S, Verboven P, Nicolaï B. Microstructural changes enhance oxygen transport in tomato (Solanum lycopersicum) fruit during maturation and ripening. THE NEW PHYTOLOGIST 2021; 232:2043-2056. [PMID: 34480758 DOI: 10.1111/nph.17712] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 08/26/2021] [Indexed: 06/13/2023]
Abstract
Climacteric ripening of tomato fruit is initiated by a characteristic surge of the production rate of ethylene, accompanied by an increase in respiration rate. As both activities consume O2 and produce CO2 , gas concentration gradients develop in the fruit that cause diffusive transport. This may, in turn, affect respiration and ethylene biosynthesis. Gas diffusion in fruit depends on the amount and connectivity of cells and intercellular spaces in 3D. We investigated micromorphological changes in different tomato tissues during development and ripening by visualizing cells and pores based on high-resolution micro-computed tomography, and computed effective O2 diffusivity coefficients based on microstructural features of the tissues. We demonstrated that mesocarp and septa tissues have larger cells but small and more disconnected pores than the placenta and columella, resulting in relatively lower effective O2 diffusivity coefficients. Cell disintegration occurred in the mesocarp and septa during ripening, indicating lysigenous air pore formation and resulting in a gradual increase of the effective O2 diffusivity. The results suggest that hypoxic conditions caused by the increasing size and, hence, diffusion resistance of the growing fruit may induce an increase of tissue porosity that results in a greatly enhanced O2 diffusivity and, thus, helps to alleviate them.
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Affiliation(s)
- Hui Xiao
- BIOSYST-MeBioS, KU Leuven, Willem de Croylaan 42, Leuven, B-3001, Belgium
| | - Agnese Piovesan
- BIOSYST-MeBioS, KU Leuven, Willem de Croylaan 42, Leuven, B-3001, Belgium
| | - Suzane Pols
- BIOSYST-MeBioS, KU Leuven, Willem de Croylaan 42, Leuven, B-3001, Belgium
| | - Pieter Verboven
- BIOSYST-MeBioS, KU Leuven, Willem de Croylaan 42, Leuven, B-3001, Belgium
| | - Bart Nicolaï
- BIOSYST-MeBioS, KU Leuven, Willem de Croylaan 42, Leuven, B-3001, Belgium
- Flanders Centre of Postharvest Technology, Willem de Croylaan 42, Leuven, B-3001, Belgium
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10
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Ohara T, Takeuchi H, Sato J, Nakamura A, Ichikawa H, Yokoyama R, Nishitani K, Minami E, Satoh S, Iwai H. Structural Alteration of Rice Pectin Affects Cell Wall Mechanical Strength and Pathogenicity of the Rice Blast Fungus Under Weak Light Conditions. PLANT & CELL PHYSIOLOGY 2021; 62:641-649. [PMID: 33543762 DOI: 10.1093/pcp/pcab019] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 01/28/2021] [Accepted: 02/02/2021] [Indexed: 05/20/2023]
Abstract
Pectin, a component of the plant cell wall, is involved in cell adhesion and environmental adaptations. We generated OsPG-FOX rice lines with little pectin due to overexpression of the gene encoding a pectin-degrading enzyme [polygalacturonase (PG)]. Overexpression of OsPG2 in rice under weak light conditions increased the activity of PG, which increased the degradation of pectin in the cell wall, thereby reducing adhesion. Under weak light conditions, the overexpression of OsPG decreased the pectin content and cell adhesion, resulting in abnormally large intercellular gaps and facilitating invasion by the rice blast fungus. OsPG2-FOX plants had weaker mechanical properties and greater sensitivity to biotic stresses than wild-type (WT) plants. However, the expression levels of disease resistance genes in non-infected leaves of OsPG2-FOX were more than twice as high as those of the WT and the intensity of disease symptoms was reduced, compared with the WT. Under normal light conditions, overexpression of OsPG2 decreased the pectin content, but did not affect cell adhesion and sensitivity to biotic stresses. Therefore, PG plays a role in regulating intercellular adhesion and the response to biotic stresses in rice.
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Affiliation(s)
- Takashi Ohara
- University of Tsukuba, Faculty of Life and Environmental SciencesTsukuba, Ibaraki 305, 8572Japan
| | - Haruki Takeuchi
- University of Tsukuba, Faculty of Life and Environmental SciencesTsukuba, Ibaraki 305, 8572Japan
| | - Junya Sato
- University of Tsukuba, Faculty of Life and Environmental SciencesTsukuba, Ibaraki 305, 8572Japan
| | - Atsuko Nakamura
- University of Tsukuba, Faculty of Life and Environmental SciencesTsukuba, Ibaraki 305, 8572Japan
| | - Hiroaki Ichikawa
- Institute of Agrobiological Sciences, National Agriculture and Food Research OrganizationTsukuba, Ibaraki 305, 8634Japan
| | | | - Kazuhiko Nishitani
- Faculty of Science, Department of Biological Sciences, Kanagawa UniversityHiratsuka,Japan
| | - Eiichi Minami
- Institute of Agrobiological Sciences, National Agriculture and Food Research OrganizationTsukuba, Ibaraki 305, 8634Japan
| | - Shinobu Satoh
- University of Tsukuba, Faculty of Life and Environmental SciencesTsukuba, Ibaraki 305, 8572Japan
| | - Hiroaki Iwai
- University of Tsukuba, Faculty of Life and Environmental SciencesTsukuba, Ibaraki 305, 8572Japan
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11
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Zinc Oxide Phytonanoparticles' Effects on Yield and Mineral Contents in Fruits of Tomato ( Solanum lycopersicum L. cv. Cherry) under Field Conditions. ScientificWorldJournal 2021; 2021:5561930. [PMID: 34220365 PMCID: PMC8213504 DOI: 10.1155/2021/5561930] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2021] [Revised: 05/14/2021] [Accepted: 05/27/2021] [Indexed: 11/24/2022] Open
Abstract
The use of phytonanoparticles in agriculture could decrease the use of fertilizers and therefore decrease soil contamination, due to their size being better assimilated in plants. It is important to mention that the nanofertilizer is slow-releasing and improves plant physiological properties and various nutritional parameters. The influence of soil and foliar applications of phytonanoparticles of ZnO with the Moringa oleifera extract under three concentrations (25, 50, and 100 ppm) was evaluated on the cherry tomato crop (Solanum lycopersicum L.). Synthesis of the phytonanoparticles was analyzed with ultraviolet-visible spectroscopy (UV-Vis) and infrared transmission spectroscopy with Fourier transform (FT-IR), as well as the analysis with the dynamic light scattering (DLS) technique. The morphometric parameters were evaluated before and after the application of the nanoparticles. The minerals' content of fruits was done 95 days after planting. Results showed that soil application was better at a concentration of 25 ppm of phytonanoparticles since it allowed the greatest number of flowers and fruits on the plant; however, it was demonstrated that when performing a foliar application, the fruit showed the highest concentrations for the elements Mg, Ca, and Na at concentrations of 511, 4589, and 223 mg kg−1, respectively.
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Van Audenhove J, Bernaerts T, De Smet V, Delbaere S, Van Loey AM, Hendrickx ME. The Structure and Composition of Extracted Pectin and Residual Cell Wall Material from Processing Tomato: The Role of a Stepwise Approach versus High-Pressure Homogenization-Facilitated Acid Extraction. Foods 2021; 10:foods10051064. [PMID: 34065932 PMCID: PMC8150267 DOI: 10.3390/foods10051064] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Revised: 04/29/2021] [Accepted: 05/07/2021] [Indexed: 01/24/2023] Open
Abstract
In literature, different pectin extraction methods exist. In this study, two approaches starting from the alcohol-insoluble residue (AIR) of processing tomato are performed in a parallel way to facilitate the comparison of pectin yield and the compositional and structural properties of the extracted pectin and residual cell wall material obtained. On the one hand, pectin is extracted stepwise using hot water, chelating agents and low-alkaline conditions targeting fractionation of the pectin population. On the other hand, an industrially relevant single-step nitric acid pectin extraction (pH 1.6) is performed. In addition to these conventional solvent pectin extractions, the role of high-pressure homogenization (HPH) as a physically disruptive treatment to facilitate further pectin extraction from the partially pectin-depleted fraction obtained after acid extraction is addressed. The impact of HPH on the pectin cell wall polysaccharide interactions was shown as almost two thirds of the residual pectin were extractable during the subsequent extractions. For both extraction approaches, pectin obtained further in the sequence was characterized by a higher molecular mass and a higher amount of rhamnogalacturonan I domains. The estimated hemicellulose and cellulose content increased from 56 mol% for the AIR to almost 90 mol% for the final unextractable fractions of both methods.
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Philippe G, Geneix N, Petit J, Guillon F, Sandt C, Rothan C, Lahaye M, Marion D, Bakan B. Assembly of tomato fruit cuticles: a cross-talk between the cutin polyester and cell wall polysaccharides. THE NEW PHYTOLOGIST 2020; 226:809-822. [PMID: 31883116 DOI: 10.1111/nph.16402] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Accepted: 12/17/2019] [Indexed: 05/23/2023]
Abstract
The cuticle is an essential and ubiquitous biological polymer composite covering aerial plant organs, whose structural component is the cutin polyester entangled with cell wall polysaccharides. The nature of the cutin-embedded polysaccharides (CEPs) and their association with cutin polyester are still unresolved Using tomato fruit as a model, chemical and enzymatic pretreatments combined with biochemical and biophysical methods were developed to compare the fine structure of CEPs with that of the noncutinized polysaccharides (NCPs). In addition, we used tomato fruits from cutin-deficient transgenic lines cus1 (cutin synthase 1) to study the impact of cutin polymerization on the fine structure of CEPs. Cutin-embedded polysaccharides exhibit specific structural features including a high degree of esterification (i.e. methylation and acetylation), a low ramification of rhamnogalacturonan (RGI), and a high crystallinity of cellulose. In addition to decreasing cutin deposition and polymerization, cus1 silencing induced a specific modification of CEPs, especially on pectin content, while NCPs were not affected. This new evidence of the structural specificities of CEPs and of the cross-talk between cutin polymerization and polysaccharides provides new hypotheses concerning the formation of these complex lipopolysaccharide edifices.
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Affiliation(s)
- Glenn Philippe
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Nathalie Geneix
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Johann Petit
- UMR 1332 Biologie du Fruit et Pathologie - INRAE Bordeaux-Aquitaine Bât, IBVM , 71 av. Edouard Bourlaux, CS 20032, 33882, Villenave d'Ornon Cedex, France
| | - Fabienne Guillon
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Christophe Sandt
- Synchrotron SOLEIL, Ligne SMIS, L'Orme des Merisiers, 91192, Gif-sur-Yvette, France
| | - Christophe Rothan
- UMR 1332 Biologie du Fruit et Pathologie - INRAE Bordeaux-Aquitaine Bât, IBVM , 71 av. Edouard Bourlaux, CS 20032, 33882, Villenave d'Ornon Cedex, France
| | - Marc Lahaye
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Didier Marion
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
| | - Bénédicte Bakan
- Unité Biopolymères, Interactions, Assemblages, INRAE, BP71627, 44316, Nantes Cedex 3, France
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Pegg T, Edelmann RR, Gladish DK. Immunoprofiling of Cell Wall Carbohydrate Modifications During Flooding-Induced Aerenchyma Formation in Fabaceae Roots. FRONTIERS IN PLANT SCIENCE 2020; 10:1805. [PMID: 32117353 PMCID: PMC7008352 DOI: 10.3389/fpls.2019.01805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2019] [Accepted: 12/24/2019] [Indexed: 05/12/2023]
Abstract
Understanding plant adaptation mechanisms to prolonged water immersion provides options for genetic modification of existing crops to create cultivars more tolerant of periodic flooding. An important advancement in understanding flooding adaptation would be to elucidate mechanisms, such as aerenchyma air-space formation induced by hypoxic conditions, consistent with prolonged immersion. Lysigenous aerenchyma formation occurs through programmed cell death (PCD), which may entail the chemical modification of polysaccharides in root tissue cell walls. We investigated if a relationship exists between modification of pectic polysaccharides through de-methyl esterification (DME) and the formation of root aerenchyma in select Fabaceae species. To test this hypothesis, we first characterized the progression of aerenchyma formation within the vascular stele of three different legumes-Pisum sativum, Cicer arietinum, and Phaseolus coccineus-through traditional light microscopy histological staining and scanning electron microscopy. We assessed alterations in stele morphology, cavity dimensions, and cell wall chemistry. Then we conducted an immunolabeling protocol to detect specific degrees of DME among species during a 48-hour flooding time series. Additionally, we performed an enzymatic pretreatment to remove select cell wall polymers prior to immunolabeling for DME pectins. We were able to determine that all species possessed similar aerenchyma formation mechanisms that begin with degradation of root vascular stele metaxylem cells. Immunolabeling results demonstrated DME occurs prior to aerenchyma formation and prepares vascular tissues for the beginning of cavity formation in flooded roots. Furthermore, enzymatic pretreatment demonstrated that removal of cellulose and select hemicellulosic carbohydrates unmasks additional antigen binding sites for DME pectin antibodies. These results suggest that additional carbohydrate modification may be required to permit DME and subsequent enzyme activity to form aerenchyma. By providing a greater understanding of cell wall pectin remodeling among legume species, we encourage further investigation into the mechanism of carbohydrate modifications during aerenchyma formation and possible avenues for flood-tolerance improvement of legume crops.
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Affiliation(s)
- Timothy Pegg
- Department of Biology, Miami University, Oxford, OH, United States
| | - Richard R. Edelmann
- Department of Biology, Miami University, Oxford, OH, United States
- Center for Advance Microscopy & Imaging, Miami University, Oxford, OH, United States
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Characterization and Expression Analysis of the Ca 2+/Cation Antiporter Gene Family in Tomatoes. PLANTS 2019; 9:plants9010025. [PMID: 31878106 PMCID: PMC7020160 DOI: 10.3390/plants9010025] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 12/17/2019] [Accepted: 12/18/2019] [Indexed: 02/06/2023]
Abstract
The Ca2+/cation antiporter (CaCA) superfamily plays an important role in the regulation of the essential element Ca2+ and cation concentrations. Characterization and expression analyses of CaCA superfamily genes were performed in the tomato (Solanum lycopersicum) as a representative of dicotyledonous plants and fruit crops. Sixteen CaCA candidate genes were found and identified as tomato CaCA, SlCaCA, by a domain search. In a phylogenetic analysis of the SlCaCA superfamily, the 16 genes were classified into SlCAX, SlNCL, SlCCX, and SlMHX families. Among them, Solyc12g011070, belonging to the SlCAX family, had four splice variants, three of which were predicted to be nonfunctional because of a lack of important motifs. EF-hand domains were only found in SlNCL, in addition to consensus Na_Ca_ex domains, and the region containing EF-hand domains was characteristically long in some members of SlNCL. Furthermore, four genes of the SlCCX family were found to be intronless. As for intracellular localization, one SlCCX member was predicted to be localized to the plasma membrane, while other SlCCXs, SlCAXs, and SlMHXs were predicted to be localized to the vacuolar membrane. The expression patterns of SlCaCAs in various organs, including during several developmental stages of fruit, were classified into four groups. Genes involved in each of the SlCAX, SlNCL, and SlCCX gene families were categorized into three or four groups according to expression patterns, suggesting role sharing within each family. The main member in each subfamily and the members with characteristic fruit expression patterns included genes whose expression was regulated by sugar or auxin and that were highly expressed in a line having metabolite-rich fruit.
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VIEIRA DADP, Caliari M, SOUZA ERBD, SOARES JÚNIOR MS. Mechanical resistance, biometric and physicochemical characteristics of tomato cultivars for industrial processing. FOOD SCIENCE AND TECHNOLOGY 2019. [DOI: 10.1590/fst.32417] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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17
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Leszczuk A, Chylińska M, Zdunek A. Enzymes and vitamin C as factors influencing the presence of arabinogalactan proteins (AGPs) in Solanum lycopersicum fruit. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 139:681-690. [PMID: 31054470 DOI: 10.1016/j.plaphy.2019.04.035] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Revised: 04/25/2019] [Accepted: 04/26/2019] [Indexed: 06/09/2023]
Abstract
Arabinogalactan proteins (AGPs) are ubiquitous components of the amorphous plant extracellular matrix. They are characterized by a high proportion of sugar moieties, heterogeneity of their protein backbone and carbohydrate chains. It is known that AGPs form a complex network with other basic constituents in cell wall thus it may also play a role in softening process of fruit. The use of enzymatic degradation and cell wall polysaccharide directed probes are valid analytical tools for the study of developmental modification of the fruit structure. However, it is unknown whether pectolytic enzymes affect AGPs. Thus, the aim of the current work is to detect AGP epitopes in situ to understand the impact of selected degradation enzymes on various carbohydrate moieties of AGPs. Secondly, there are no data with clarification of the impact of vitamin C on fruit ripening processes at the cellular level; hence, we also focused on the effect of vitamin C on the arrangement of AGPs as important constituents of the polysaccharide-proteoglycan network in the fruit cell wall. The results indicate that the distribution of the examined AGP carbohydrate moieties differs, which are related to changes in tissue architecture. The absence of glycan chains causes disruption in establishment of correlations between cell wall constituents and rearrangement in the cell wall structure. The induced modifications of cell walls are not comparable to alterations occurring in naturally ripening fruit, which allows a conclusion that the synergistic action of a wide variety of factors influences ripening.
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Affiliation(s)
- Agata Leszczuk
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290, Lublin, Poland.
| | - Monika Chylińska
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290, Lublin, Poland.
| | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290, Lublin, Poland.
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18
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Jeong HY, Nguyen HP, Eom SH, Lee C. Integrative analysis of pectin methylesterase (PME) and PME inhibitors in tomato (Solanum lycopersicum): Identification, tissue-specific expression, and biochemical characterization. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018; 132:557-565. [PMID: 30326434 DOI: 10.1016/j.plaphy.2018.10.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2018] [Revised: 10/08/2018] [Accepted: 10/08/2018] [Indexed: 06/08/2023]
Abstract
Although previous studies have demonstrated that the degree of demethylesterification of pectin polysaccharides is modulated during tomato fruit ripening, its involvement in vegetative organ development has been seldom investigated. As a first step in understanding the importance of pectin modification during vegetative stages, we used chemical, biochemical, and molecular approaches to analyze PMEs and PMEIs in tomato plants. We found that tomato cell walls isolated from vegetative tissues as well as the fruit contain substantial quantities of pectin, and different degrees of methylesterification were evident in different tissues. Our chemical study was further substantiated by immunolocalization analysis, which showed that selective removal of pectin-bound methyl groups is required for proper organ development and growth. In the tomato genome, there exists 79 PMEs and 48 PMEIs with temporally and spatially regulated expression. As a case study, we showed that two tomato PMEIs (SolycPMEI13 and SolycPMEI14) exhibited PMEI activities. This is the first report regarding the genome-wide identification and expression profiling of PME/PMEIs in tomato and the first chemical evidence of the differential degrees of pectin methylesterification in vegetative and reproductive tissues. Taken together, our findings provide an important tool to unravel the molecular and physiological functions of tomato PME and PMEI in further study.
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Affiliation(s)
- Ho Young Jeong
- Graduate School of Biotechnology, Kyung Hee University, Yongin, 446-701, South Korea
| | - Hong Phuong Nguyen
- Graduate School of Biotechnology, Kyung Hee University, Yongin, 446-701, South Korea
| | - Seok Hyun Eom
- Department of Horticultural Biotechnology, Kyung Hee University, Yongin, 446-701, South Korea.
| | - Chanhui Lee
- Graduate School of Biotechnology, Kyung Hee University, Yongin, 446-701, South Korea; Department of Plant and Environmental New Resources, Kyung Hee University, Yongin, 446-701, South Korea.
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19
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Zhang W, Xie F, Liu X, Luo J, Wu J, Wang Z. Pectin from Black Tomato Pomace: Characterization, Interaction with Gallotannin, and Emulsifying Stability Properties. STARCH-STARKE 2018. [DOI: 10.1002/star.201800172] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Wei Zhang
- Department of Food Science and Engineering, School of Agriculture and Biology, Shanghai Jiao Tong University; NO. 800, Dongchuan Road Shanghai 200240 China
| | - Fan Xie
- Department of Food Science and Engineering, School of Agriculture and Biology, Shanghai Jiao Tong University; NO. 800, Dongchuan Road Shanghai 200240 China
| | - Xiaohui Liu
- College of Longrun Pu-erh Tea, Yunnan Agriculturual University; Kunming 650201 Yunnan China
| | - Jing Luo
- Department of Food Science and Engineering, School of Agriculture and Biology, Shanghai Jiao Tong University; NO. 800, Dongchuan Road Shanghai 200240 China
| | - Jinhong Wu
- Department of Food Science and Engineering, School of Agriculture and Biology, Shanghai Jiao Tong University; NO. 800, Dongchuan Road Shanghai 200240 China
| | - Zhengwu Wang
- Department of Food Science and Engineering, School of Agriculture and Biology, Shanghai Jiao Tong University; NO. 800, Dongchuan Road Shanghai 200240 China
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Leszczuk A, Chylińska M, Zięba E, Skrzypek T, Szczuka E, Zdunek A. Structural network of arabinogalactan proteins (AGPs) and pectins in apple fruit during ripening and senescence processes. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2018; 275:36-48. [PMID: 30107880 DOI: 10.1016/j.plantsci.2018.07.019] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Revised: 07/20/2018] [Accepted: 07/31/2018] [Indexed: 06/08/2023]
Abstract
The cell wall is an essential framework determining the overall form of the plant cell. Our study was focused on the distribution of arabinogalactan proteins (AGPs), arabinan, and homogalacturonan in fruit cells during ripening and storage with emphasis on quantitative analysis of their presence in particular regions of the cell wall - plasma membrane. The localization of the examined compounds was determined with immunohistochemistry techniques and immunogold labelling. Spatio-temporal colocalization between AGPs epitopes - [βGlcA(1→3)-αGalA(1→2)Rha] recognized by JIM13 and MAC207 antibodies, and arabinan labelled by the LM16 antibody was detected in the inner cell wall layer, in association with the plasma membrane. The specific arrangement of AGP and arabinan epitopes differentiated them from homogalacturonan epitopes, consisting of GalA residues recognized by LM19 and LM20 antibodies in all the examined fruit maturity stages. The disruption of cell wall - plasma membrane continuum, observed during ripening-associated softening process, was associated with both the substantial decrease of AGPs, pectins content and with remodeling of their arrangement. The results indicate that the textural properties of fruit during growth and postharvest storage, an attribute of fruit quality becoming selection criteria for consumers, depend on the existence of dynamic network organizing polysaccharides and glycoproteins in the extracellular matrix.
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Affiliation(s)
- Agata Leszczuk
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290, Lublin, Poland.
| | - Monika Chylińska
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290, Lublin, Poland.
| | - Emil Zięba
- Confocal and Electron Microscopy Laboratory, Centre for Interdisciplinary Research, John Paul II Catholic University of Lublin, Al. Kraśnicka 102, 20-718, Lublin, Poland.
| | - Tomasz Skrzypek
- Confocal and Electron Microscopy Laboratory, Centre for Interdisciplinary Research, John Paul II Catholic University of Lublin, Al. Kraśnicka 102, 20-718, Lublin, Poland.
| | - Ewa Szczuka
- Department of Plant Anatomy and Cytology, Maria Curie-Skłodowska University, Akademicka 19, 20-033 Lublin, Poland.
| | - Artur Zdunek
- Institute of Agrophysics, Polish Academy of Sciences, Doświadczalna 4, 20-290, Lublin, Poland.
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Wang X, Lin L, Tang Y, Xia H, Zhang X, Yue M, Qiu X, Xu K, Wang Z. Transcriptomic insights into citrus segment membrane's cell wall components relating to fruit sensory texture. BMC Genomics 2018; 19:280. [PMID: 29685103 PMCID: PMC5914067 DOI: 10.1186/s12864-018-4669-y] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Accepted: 04/13/2018] [Indexed: 01/14/2023] Open
Abstract
Background During fresh fruit consumption, sensory texture is one factor that affects the organoleptic qualities. Chemical components of plant cell walls, including pectin, cellulose, hemicellulose and lignin, play central roles in determining the textural qualities. To explore the genes and regulatory pathways involved in fresh citrus’ perceived sensory texture, we performed mRNA-seq analyses of the segment membranes of two citrus cultivars, Shiranui and Kiyomi, with different organoleptic textures. Results Segment membranes were sampled at two developmental stages of citrus fruit, the beginning and end of the expansion period. More than 3000 differentially expressed genes were identified. The gene ontology analysis revealed that more categories were significantly enriched in ‘Shiranui’ than in ‘Kiyomi’ at both developmental stages. In total, 108 significantly enriched pathways were obtained, with most belonging to metabolism. A detailed transcriptomic analysis revealed potential critical genes involved in the metabolism of cell wall structures, for example, GAUT4 in pectin synthesis, CESA1, 3 and 6, and SUS4 in cellulose synthesis, CSLC5, XXT1 and XXT2 in hemicellulose synthesis, and CSE in lignin synthesis. Low levels, or no expression, of genes involved in cellulose and hemicellulose, such as CESA4, CESA7, CESA8, IRX9 and IRX14, confirmed that secondary cell walls were negligible or absent in citrus segment membranes. A chemical component analysis of the segment membranes from mature fruit revealed that the pectin, cellulose and lignin contents, and the segment membrane’s weight (% of segment) were greater in ‘Kiyomi’. Conclusion Organoleptic quality of citrus is easily overlooked. It is mainly determined by sensory texture perceived in citrus segment membrane properties. We performed mRNA-seq analyses of citrus segment membranes to explore the genes and regulatory pathways involved in fresh citrus’ perceived sensory texture. Transcriptomic data showed high repeatability between two independent biological replicates. The expression levels of genes involved in cell wall structure metabolism, including pectin, cellulose, hemicellulose and lignin, were investigated. Meanwhile, chemical component contents of the segment membranes from mature fruit were analyzed. This study provided detailed transcriptional regulatory profiles of different organoleptic citrus qualities and integrated insights into the mechanisms affecting citrus’ sensory texture. Electronic supplementary material The online version of this article (10.1186/s12864-018-4669-y) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Xun Wang
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Lijin Lin
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Yi Tang
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Hui Xia
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Xiancong Zhang
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Maolan Yue
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Xia Qiu
- Institution of Pomology & Olericulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China
| | - Ke Xu
- Sichuan Horticultural Crop Agrotechnical Promotion Workstation, No 4 Wuhou Memorial Temple Street, Wuhou District, Chengdu, 610041, Sichuan, China
| | - Zhihui Wang
- College of Horticulture, Sichuan Agricultural University, No 211 Huimin Road, Wenjiang District, Chengdu, 611130, Sichuan, China.
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Wang D, Yeats TH, Uluisik S, Rose JKC, Seymour GB. Fruit Softening: Revisiting the Role of Pectin. TRENDS IN PLANT SCIENCE 2018; 23:302-310. [PMID: 29429585 DOI: 10.1016/j.tplants.2018.01.006] [Citation(s) in RCA: 211] [Impact Index Per Article: 35.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Revised: 01/16/2018] [Accepted: 01/18/2018] [Indexed: 05/18/2023]
Abstract
Fruit softening, which is a major determinant of shelf life and commercial value, is the consequence of multiple cellular processes, including extensive remodeling of cell wall structure. Recently, it has been shown that pectate lyase (PL), an enzyme that degrades de-esterified pectin in the primary wall, is a major contributing factor to tomato fruit softening. Studies of pectin structure, distribution, and dynamics have indicated that pectins are more tightly integrated with cellulose microfibrils than previously thought and have novel structural features, including branches of the main polymer backbone. Moreover, recent studies of the significance of pectinases, such as PL and polygalacturonase, are consistent with a causal relationship between pectin degradation and a major effect on fruit softening.
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Affiliation(s)
- Duoduo Wang
- Plant and Crop Science Division, School of Biosciences, University of Nottingham, Sutton Bonington, Loughborough, LE12 5RD, UK
| | - Trevor H Yeats
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA; Robert W. Holley Center for Agriculture and Health, USDA-ARS, Cornell University, Ithaca, NY 14853, USA
| | - Selman Uluisik
- Colemerik Vocational School, Hakkari University, University Street, Karsiyaka Neighborhood 30000, Hakkari, Turkey
| | - Jocelyn K C Rose
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA
| | - Graham B Seymour
- Plant and Crop Science Division, School of Biosciences, University of Nottingham, Sutton Bonington, Loughborough, LE12 5RD, UK.
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High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening. Nat Commun 2018; 9:364. [PMID: 29371663 PMCID: PMC5785480 DOI: 10.1038/s41467-017-02782-9] [Citation(s) in RCA: 190] [Impact Index Per Article: 31.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2017] [Accepted: 12/22/2017] [Indexed: 12/20/2022] Open
Abstract
Tomato (Solanum lycopersicum) is an established model for studying fruit biology; however, most studies of tomato fruit growth and ripening are based on homogenized pericarp, and do not consider the internal tissues, or the expression signatures of individual cell and tissue types. We present a spatiotemporally resolved transcriptome analysis of tomato fruit ontogeny, using laser microdissection (LM) or hand dissection coupled with RNA-Seq analysis. Regulatory and structural gene networks, including families of transcription factors and hormone synthesis and signaling pathways, are defined across tissue and developmental spectra. The ripening program is revealed as comprising gradients of gene expression, initiating in internal tissues then radiating outward, and basipetally along a latitudinal axis. We also identify spatial variations in the patterns of epigenetic control superimposed on ripening gradients. Functional studies elucidate previously masked regulatory phenomena and relationships, including those associated with fruit quality traits, such as texture, color, aroma, and metabolite profiles. Cell-type transcriptome profiling greatly elucidate organismal development. Here, the authors report a spatiotemporally resolved comprehensive transcriptome analysis of tomato fruit ontogeny and suggest a new model of fruit maturation which initiates in internal tissues then radiates outwards.
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24
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Gerschenson LN. The production of galacturonic acid enriched fractions and their functionality. Food Hydrocoll 2017. [DOI: 10.1016/j.foodhyd.2016.11.030] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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Guillon F, Moïse A, Quemener B, Bouchet B, Devaux MF, Alvarado C, Lahaye M. Remodeling of pectin and hemicelluloses in tomato pericarp during fruit growth. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 257:48-62. [PMID: 28224918 DOI: 10.1016/j.plantsci.2017.01.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2016] [Revised: 01/09/2017] [Accepted: 01/16/2017] [Indexed: 05/06/2023]
Abstract
Tomato fruit texture depends on histology and cell wall architecture, both under genetic and developmental controls. If ripening related cell wall modifications have been well documented with regard to softening, little is known about cell wall construction during early fruit development. Identification of key events and their kinetics with regard to tissue architecture and cell wall development can provide new insights on early phases of texture elaboration. In this study, changes in pectin and hemicellulose chemical characteristics and location were investigated in the pericarp tissue of tomato (Solanum lycopersicon var Levovil) at four stages of development (7, 14 and 21day after anthesis (DPA) and mature green stages). Analysis of cell wall composition and polysaccharide structure revealed that both are continuously modified during fruit development. At early stages, the relative high rhamnose content in cell walls indicates a high synthesis of rhamnogalacturonan I next to homogalacturonan. Fine tuning of rhamnogalacturonan I side chains appears to occur from the cell expansion phase until prior to the mature green stage. Cell wall polysaccharide remodelling also concerns xyloglucans and (galacto)glucomannans, the major hemicelluloses in tomato cell walls. In situ localization of cell wall polysaccharides in pericarp tissue revealed non-ramified RG-I rich pectin and XyG at cellular junctions and in the middle lamella of young fruit. Blocks of non-methyl esterified homogalacturonan are detected as soon as 14 DPA in the mesocarp and remained restricted to cell corner and middle lamella whatever the stages. These results point to new questions about the role of pectin RGI and XyG in cell adhesion and its maintenance during cell expansion.
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Affiliation(s)
- Fabienne Guillon
- INRA, UR1268 Biopolymères, Interactions et Assemblages, BP 71627, F-44316 Nantes, France
| | - Adeline Moïse
- INRA, UR1268 Biopolymères, Interactions et Assemblages, BP 71627, F-44316 Nantes, France
| | - Bernard Quemener
- INRA, UR1268 Biopolymères, Interactions et Assemblages, BP 71627, F-44316 Nantes, France
| | - Brigitte Bouchet
- INRA, UR1268 Biopolymères, Interactions et Assemblages, BP 71627, F-44316 Nantes, France
| | - Marie-Françoise Devaux
- INRA, UR1268 Biopolymères, Interactions et Assemblages, BP 71627, F-44316 Nantes, France
| | - Camille Alvarado
- INRA, UR1268 Biopolymères, Interactions et Assemblages, BP 71627, F-44316 Nantes, France
| | - Marc Lahaye
- INRA, UR1268 Biopolymères, Interactions et Assemblages, BP 71627, F-44316 Nantes, France.
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Xie F, Yuan S, Pan H, Wang R, Cao J, Jiang W. Effect of yeast mannan treatments on ripening progress and modification of cell wall polysaccharides in tomato fruit. Food Chem 2017; 218:509-517. [DOI: 10.1016/j.foodchem.2016.09.086] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Revised: 09/12/2016] [Accepted: 09/14/2016] [Indexed: 10/21/2022]
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Hocq L, Pelloux J, Lefebvre V. Connecting Homogalacturonan-Type Pectin Remodeling to Acid Growth. TRENDS IN PLANT SCIENCE 2017; 22:20-29. [PMID: 27884541 DOI: 10.1016/j.tplants.2016.10.009] [Citation(s) in RCA: 118] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Revised: 10/20/2016] [Accepted: 10/25/2016] [Indexed: 05/18/2023]
Abstract
According to the 'acid growth theory', cell wall acidification controls cell elongation, therefore plant growth. This notably involves changes in cell wall mechanics through modifications of cell wall polysaccharide structure. Recently, advances in cell biology showed that changes in cell elongation rate can be mediated by the remodeling of pectins, and in particular of homogalacturonans (HGs). Their demethylesterification appears to be a key element controlling the chemistry and the rheology of the cell wall. We postulate that precise and dynamic modulation of extracellular pH plays a central role in the control of HG-modifying enzyme activities, and in particular those of pectin methylesterases and polygalacturonases. We propose that acid growth requires dynamic HG remodeling through the tight control of cell wall pH.
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Affiliation(s)
- Ludivine Hocq
- EA3900 Biologie des Plantes et Innovation (BIOPI), Structure Féderative de Recherche (SFR) Condorcet Centre National de la Recherche Scientifique (CNRS) 3417, Université de Picardie, 33 Rue St Leu, 80039 Amiens, France
| | - Jérôme Pelloux
- EA3900 Biologie des Plantes et Innovation (BIOPI), Structure Féderative de Recherche (SFR) Condorcet Centre National de la Recherche Scientifique (CNRS) 3417, Université de Picardie, 33 Rue St Leu, 80039 Amiens, France.
| | - Valérie Lefebvre
- EA3900 Biologie des Plantes et Innovation (BIOPI), Structure Féderative de Recherche (SFR) Condorcet Centre National de la Recherche Scientifique (CNRS) 3417, Université de Picardie, 33 Rue St Leu, 80039 Amiens, France.
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28
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Dheilly E, Gall SL, Guillou MC, Renou JP, Bonnin E, Orsel M, Lahaye M. Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes. BMC PLANT BIOLOGY 2016; 16:201. [PMID: 27630120 PMCID: PMC5024441 DOI: 10.1186/s12870-016-0887-0] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2016] [Accepted: 09/01/2016] [Indexed: 05/18/2023]
Abstract
BACKGROUND Fruit quality depends on a series of biochemical events that modify appearance, flavour and texture throughout fruit development and ripening. Cell wall polysaccharide remodelling largely contributes to the elaboration of fleshy fruit texture. Although several genes and enzymes involved in cell wall polysaccharide biosynthesis and modifications are known, their coordinated activity in these processes is yet to be discovered. RESULTS Combined transcriptomic and biochemical analyses allowed the identification of putative enzymes and related annotated members of gene families involved in cell wall polysaccharide composition and structural changes during apple fruit growth and ripening. The early development genes were mainly related to cell wall biosynthesis and degradation with a particular target on hemicelluloses. Fine structural evolutions of galactoglucomannan were strongly correlated with mannan synthase, glucanase (GH9) and β-galactosidase gene expression. In contrast, fewer genes related to pectin metabolism and cell expansion (expansin genes) were observed in ripening fruit combined with expected changes in cell wall polysaccharide composition. CONCLUSIONS Hemicelluloses undergo major structural changes particularly during early fruit development. The high number of early expressed β-galactosidase genes questions their function on galactosylated structures during fruit development and storage. Their activity and cell wall substrate remains to be identified. Moreover, new insights into the potential role of peroxidases and transporters, along with cell wall metabolism open the way to further studies on concomitant mechanisms involved in cell wall assembly/disassembly during fruit development and storage.
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Affiliation(s)
- Emmanuelle Dheilly
- INRA UR 1268 Biopolymères, Interactions, Assemblages, F-44316 Nantes, France
- IRHS, INRA, AGROCAMPUS-Ouest, Université d’Angers, SFR 4207 QUASAV, 42 rue Georges Morel, 49071 Beaucouzé cedex, France
| | - Sophie Le Gall
- INRA UR 1268 Biopolymères, Interactions, Assemblages, F-44316 Nantes, France
| | - Marie-Charlotte Guillou
- IRHS, INRA, AGROCAMPUS-Ouest, Université d’Angers, SFR 4207 QUASAV, 42 rue Georges Morel, 49071 Beaucouzé cedex, France
| | - Jean-Pierre Renou
- IRHS, INRA, AGROCAMPUS-Ouest, Université d’Angers, SFR 4207 QUASAV, 42 rue Georges Morel, 49071 Beaucouzé cedex, France
| | - Estelle Bonnin
- INRA UR 1268 Biopolymères, Interactions, Assemblages, F-44316 Nantes, France
| | - Mathilde Orsel
- IRHS, INRA, AGROCAMPUS-Ouest, Université d’Angers, SFR 4207 QUASAV, 42 rue Georges Morel, 49071 Beaucouzé cedex, France
| | - Marc Lahaye
- INRA UR 1268 Biopolymères, Interactions, Assemblages, F-44316 Nantes, France
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29
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do Nascimento GE, Iacomini M, Cordeiro LMC. A comparative study of mucilage and pulp polysaccharides from tamarillo fruit (Solanum betaceum Cav.). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 104:278-283. [PMID: 27163609 DOI: 10.1016/j.plaphy.2016.04.055] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Revised: 04/28/2016] [Accepted: 04/30/2016] [Indexed: 06/05/2023]
Abstract
A comparative study of mucilage (locular tissue) and pulp polysaccharides from ripe tamarillo fruits (Solanum betaceum Cav.) was carried out. After aqueous and alkaline extractions and various purification steps (freeze-thaw and α-amylase - EC 3.2.1.1 treatments, Fehling precipitation and ultrafiltration through 50 kDa cut-off membrane), the obtained fractions from mucilage were analyzed by sugar composition, HPSEC, and NMR spectroscopy analyses. The results showed that the mucilage of tamarillo contains a highly methoxylated homogalacturonans mixed with type I arabinogalactans, a linear (1 → 5)-linked α-L-arabinan, and a linear (1 → 4)-β-D-xylan. A comparison with polysaccharides extracted from the pulp revealed that differences were observed in the yield and in the ratio of extracted polysaccharides. Moreover, structural differences between pulp and mucilage polysaccharides were also observed, such as in the length of side chains of the pectins, and in the degree of branching of the xylans.
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Affiliation(s)
- Georgia Erdmann do Nascimento
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil
| | - Marcello Iacomini
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil
| | - Lucimara M C Cordeiro
- Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, CP 19.046, CEP 81.531-980, Curitiba, PR, Brazil.
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30
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Fasoli M, Dell'Anna R, Dal Santo S, Balestrini R, Sanson A, Pezzotti M, Monti F, Zenoni S. Pectins, Hemicelluloses and Celluloses Show Specific Dynamics in the Internal and External Surfaces of Grape Berry Skin During Ripening. PLANT & CELL PHYSIOLOGY 2016; 57:1332-49. [PMID: 27095736 DOI: 10.1093/pcp/pcw080] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Accepted: 04/12/2016] [Indexed: 05/06/2023]
Abstract
Grapevine berry skin is a complex structure that contributes to the final size and shape of the fruit and affects its quality traits. The organization of cell wall polysaccharides in situ and their modification during ripening are largely uncharacterized. The polymer structure of Corvina berry skin, its evolution during ripening and related modifying genes were determined by combing mid-infrared micro-spectroscopy and multivariate statistical analysis with transcript profiling and immunohistochemistry. Spectra were acquired in situ using a surface-sensitive technique on internal and external sides of the skin without previous sample pre-treatment, allowing comparison of the related cell wall polymer dynamics. The external surface featured cuticle-related bands; the internal surface showed more adsorbed water. Application of surface-specific normalization revealed the major molecular changes related to hemicelluloses and pectins in the internal surface and to cellulose and pectins in the external surface and that they occur between mid-ripening and full ripening in both sides of the skin. Transcript profiling of cell wall-modifying genes indicated a general suppression of cell wall metabolism during ripening. Genes related to pectin metabolism-a β-galactosidase, a pectin(methyl)esterase and a pectate lyase-and a xyloglucan endotransglucosylase/hydrolase, involved in hemicellulose modification, showed enhanced expression. In agreement with Fourier transform infrared spectroscopy, patterns due to pectin methyl esterification provided new insights into the relationship between pectin modifications and the associated transcript profile during skin ripening. This study proposes an original description of polymer dynamics in grape berries during ripening, highlighting differences between the internal and external sides of the skin.
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Affiliation(s)
- Marianna Fasoli
- Department of Biotechnology, University of Verona, 37134 Verona, Italy These authors contributed equally to this work
| | - Rossana Dell'Anna
- Micro Nano Facility, Fondazione Bruno Kessler, 38123 Trento, Italy These authors contributed equally to this work
| | - Silvia Dal Santo
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | | | - Andrea Sanson
- Department of Computer Science, University of Verona, 37134 Verona, Italy Present address: Department of Physics and Astronomy, University of Padova, 35131 Padova, Italy
| | - Mario Pezzotti
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Francesca Monti
- Department of Computer Science, University of Verona, 37134 Verona, Italy
| | - Sara Zenoni
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
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31
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Zhao J, Li Y, Ding L, Yan S, Liu M, Jiang L, Zhao W, Wang Q, Yan L, Liu R, Zhang X. Phloem transcriptome signatures underpin the physiological differentiation of the pedicel, stalk and fruit of cucumber (Cucumis sativus L.). PLANT & CELL PHYSIOLOGY 2016; 57:19-34. [PMID: 26568324 DOI: 10.1093/pcp/pcv168] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2015] [Accepted: 10/27/2015] [Indexed: 06/05/2023]
Abstract
Cucumber is one of the most important vegetables grown worldwide due to its important economic and nutritional value. The cucumber fruit consists morphologically of the undesirable stalk and the tasty fruit; however, physiological differentiation of these two parts and the underlying molecular basis remain largely unknown. Here we characterized the physiological differences among the pedicel, stalk and fruit, and compared the respective phloem transcriptomes using laser capture microdissection coupled with RNA sequencing (RNA-Seq). We found that the pedicel was characterized by minor cell expansion and a high concentration of stachyose, the stalk showed rapid cell expansion and high raffinose accumulation, and the fruit featured transition from cell division to cell expansion and high levels of monosaccharides. Analyses of transcriptome data indicated that cell wall- and calcium ion binding-related genes contributed to the cell expansion in the pedicel and stalk, whereas genes implicated in cell cycle and hormone actions regulated the transition from cell division to cell expansion in the fruit. Differential sugar distribution in these three phloem-connected tissues resulted from tissue-specific sugar metabolism and transport. Enrichment of transcription factors in the stalk and fruit may facilitate nutrient accumulation in these sink organs. As such, phloem-located gene expression partially orchestrated physiological differentiation of the pedicel, stalk and fruit in cucumber. In addition, we identified 432 cucumber-unique genes and five phloem markers guiding future functional studies.
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Affiliation(s)
- Jianyu Zhao
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
| | - Yanqiang Li
- Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 201602, China University of Chinese Academy of Sciences, Beijing 100039, China
| | - Lian Ding
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
| | - Shuangshuang Yan
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
| | - Meiling Liu
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
| | - Li Jiang
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
| | - Wensheng Zhao
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
| | - Qian Wang
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
| | - Liying Yan
- College of Horticulture Science and Technology, Hebei Normal University of Science and Technology, Qinhuangdao 066004, China
| | - Renyi Liu
- Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 201602, China
| | - Xiaolan Zhang
- Department of Vegetable Sciences, Beijing Key Laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, China Agricultural University, Beijing 100193, China
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Cáez-Ramirez GR, Téllez-Medina DI, Gutierrez-López GF. Multiscale and Nanostructural Approach to Fruits Stability. FOOD NANOSCIENCE AND NANOTECHNOLOGY 2015. [DOI: 10.1007/978-3-319-13596-0_16] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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33
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Scheler C, Weitbrecht K, Pearce SP, Hampstead A, Büttner-Mainik A, Lee KJD, Voegele A, Oracz K, Dekkers BJW, Wang X, Wood ATA, Bentsink L, King JR, Knox JP, Holdsworth MJ, Müller K, Leubner-Metzger G. Promotion of testa rupture during garden cress germination involves seed compartment-specific expression and activity of pectin methylesterases. PLANT PHYSIOLOGY 2015; 167:200-15. [PMID: 25429110 PMCID: PMC4280999 DOI: 10.1104/pp.114.247429] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Pectin methylesterase (PME) controls the methylesterification status of pectins and thereby determines the biophysical properties of plant cell walls, which are important for tissue growth and weakening processes. We demonstrate here that tissue-specific and spatiotemporal alterations in cell wall pectin methylesterification occur during the germination of garden cress (Lepidium sativum). These cell wall changes are associated with characteristic expression patterns of PME genes and resultant enzyme activities in the key seed compartments CAP (micropylar endosperm) and RAD (radicle plus lower hypocotyl). Transcriptome and quantitative real-time reverse transcription-polymerase chain reaction analysis as well as PME enzyme activity measurements of separated seed compartments, including CAP and RAD, revealed distinct phases during germination. These were associated with hormonal and compartment-specific regulation of PME group 1, PME group 2, and PME inhibitor transcript expression and total PME activity. The regulatory patterns indicated a role for PME activity in testa rupture (TR). Consistent with a role for cell wall pectin methylesterification in TR, treatment of seeds with PME resulted in enhanced testa permeability and promoted TR. Mathematical modeling of transcript expression changes in germinating garden cress and Arabidopsis (Arabidopsis thaliana) seeds suggested that group 2 PMEs make a major contribution to the overall PME activity rather than acting as PME inhibitors. It is concluded that regulated changes in the degree of pectin methylesterification through CAP- and RAD-specific PME and PME inhibitor expression play a crucial role during Brassicaceae seed germination.
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Affiliation(s)
- Claudia Scheler
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Karin Weitbrecht
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Simon P Pearce
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Anthony Hampstead
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Annette Büttner-Mainik
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Kieran J D Lee
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Antje Voegele
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Krystyna Oracz
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Bas J W Dekkers
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Xiaofeng Wang
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Andrew T A Wood
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Leónie Bentsink
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - John R King
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - J Paul Knox
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Michael J Holdsworth
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Kerstin Müller
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
| | - Gerhard Leubner-Metzger
- Botany and Plant Physiology, Institute for Biology II, Faculty of Biology, University of Freiburg, D-79104 Freiburg, Germany (C.S., K.W., A.B.-M., K.O., G.L.-M.);Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt, D-85764 Neuherberg, Germany (C.S.);Staatliches Weinbauinstitut Freiburg, D-79104 Freiburg, Germany (K.W.);Centre for Plant Integrative Biology (S.P.P., A.H., A.T.A.W., J.R.K., M.J.H.) and Division of Plant and Crop Science (S.P.P., M.J.H., K.M.), School of Biosciences, University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Leicestershire LE12 5RD, United Kingdom;School of Mathematical Sciences, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom (S.P.P., A.H., A.T.A.W., J.R.K.)Agroscope, Institute for Plant Production Sciences, Seed Quality, CH-8046 Zurich, Switzerland (A.B.-M.);Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, United Kingdom (K.J.D.L., J.P.K.);National Institute for Health Research Trainees Coordinating Centre, Leeds Innovation Centre, Leeds LS2 9DF, United Kingdom (K.J.D.L.);School of Biological Sciences, Plant Molecular Science and Centre for Systems and Synthetic Biology, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom (A.V., G.L.-M.);Department of Plant Physiology, Warsaw University of Life Sciences, 02-776, Warsaw, Poland (K.O.);Wageningen Seed Laboratory, Laboratory of Plant Physiology, Wageningen University and Research Centre, NL-6708 PB Wageningen, The Netherlands (B.J.W.D., L.B.);College of Life Sciences, South China Agricultural University, Guangzhou 510642, China (X.W.); andLaboratory of Growth Regulators, Faculty of Science, Palacký University and Institute of Experimental Botany, CZ-783 71 Olomouc, Czech Republic (G.L.-M.)
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Fabi JP, Broetto SG, da Silva SLGL, Zhong S, Lajolo FM, do Nascimento JRO. Analysis of papaya cell wall-related genes during fruit ripening indicates a central role of polygalacturonases during pulp softening. PLoS One 2014; 9:e105685. [PMID: 25162506 PMCID: PMC4146514 DOI: 10.1371/journal.pone.0105685] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2014] [Accepted: 07/23/2014] [Indexed: 01/14/2023] Open
Abstract
Papaya (Carica papaya L.) is a climacteric fleshy fruit that undergoes dramatic changes during ripening, most noticeably a severe pulp softening. However, little is known regarding the genetics of the cell wall metabolism in papayas. The present work describes the identification and characterization of genes related to pulp softening. We used gene expression profiling to analyze the correlations and co-expression networks of cell wall-related genes, and the results suggest that papaya pulp softening is accomplished by the interactions of multiple glycoside hydrolases. The polygalacturonase cpPG1 appeared to play a central role in the network and was further studied. The transient expression of cpPG1 in papaya results in pulp softening and leaf necrosis in the absence of ethylene action and confirms its role in papaya fruit ripening.
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Affiliation(s)
- João Paulo Fabi
- Department of Food Science and Experimental Nutrition, FCF, University of São Paulo, São Paulo, São Paulo, Brazil
- University of São Paulo, – NAPAN – Food and Nutrition Research Center, São Paulo, São Paulo, Brazil
| | - Sabrina Garcia Broetto
- Department of Food Science and Experimental Nutrition, FCF, University of São Paulo, São Paulo, São Paulo, Brazil
| | | | - Silin Zhong
- State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China
| | - Franco Maria Lajolo
- Department of Food Science and Experimental Nutrition, FCF, University of São Paulo, São Paulo, São Paulo, Brazil
- University of São Paulo, – NAPAN – Food and Nutrition Research Center, São Paulo, São Paulo, Brazil
| | - João Roberto Oliveira do Nascimento
- Department of Food Science and Experimental Nutrition, FCF, University of São Paulo, São Paulo, São Paulo, Brazil
- University of São Paulo, – NAPAN – Food and Nutrition Research Center, São Paulo, São Paulo, Brazil
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Karlova R, Chapman N, David K, Angenent GC, Seymour GB, de Maagd RA. Transcriptional control of fleshy fruit development and ripening. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:4527-41. [PMID: 25080453 DOI: 10.1093/jxb/eru316] [Citation(s) in RCA: 192] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Fleshy fruits have evolved to be attractive to frugivores in order to enhance seed dispersal, and have become an indispensable part of the human diet. Here we review the recent advances in the understanding of transcriptional regulation of fleshy fruit development and ripening with a focus on tomato. While aspects of fruit development are probably conserved throughout the angiosperms, including the model plant Arabidopsis thaliana, it is shown that the likely orthologues of Arabidopsis genes have distinct functions in fleshy fruits. The model for the study of fleshy fruit development is tomato, because of the availability of single gene mutants and transgenic knock-down lines. In other species, our knowledge is often incomplete or absent. Tomato fruit size and shape are co-determined by transcription factors acting during formation of the ovary. Other transcription factors play a role in fruit chloroplast formation, and upon ripening impact quality aspects such as secondary metabolite content. In tomato, the transcription factors NON-RIPENING (NOR), COLORLESS NON-RIPENING (CNR), and RIPENING INHIBITOR (MADS-RIN) in concert with ethylene signalling regulate ripening, possibly in response to a developmental switch. Additional components include TOMATO AGAMOUS-LIKE1 (TAGL1), APETALA2a (AP2a), and FRUITFULL (FUL1 and FUL2). The links between this highly connected regulatory network and downstream effectors modulating colour, texture, and flavour are still relatively poorly understood. Intertwined with this network is post-transcriptional regulation by fruit-expressed microRNAs targeting several of these transcription factors. This important developmental process is also governed by changes in DNA methylation levels and possibly chromatin remodelling.
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Affiliation(s)
- Rumyana Karlova
- Molecular Plant Physiology, Utrecht University, 3584 CH Utrecht, The Netherlands Laboratory of Molecular Biology, Wageningen University, 6700 ET Wageningen, The Netherlands
| | - Natalie Chapman
- Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, UK
| | - Karine David
- University of Auckland, School of Biological Sciences, Auckland, New Zealand
| | - Gerco C Angenent
- Laboratory of Molecular Biology, Wageningen University, 6700 ET Wageningen, The Netherlands Business Unit Bioscience, Plant Research International, 6700 AP Wageningen, The Netherlands
| | - Graham B Seymour
- Plant and Crop Science Division, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, UK
| | - Ruud A de Maagd
- Business Unit Bioscience, Plant Research International, 6700 AP Wageningen, The Netherlands Chair group Bioinformatics, Wageningen University, 6700 ET Wageningen, The Netherlands
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Takizawa A, Hyodo H, Wada K, Ishii T, Satoh S, Iwai H. Regulatory specialization of xyloglucan (XG) and glucuronoarabinoxylan (GAX) in pericarp cell walls during fruit ripening in tomato (Solanum lycopersicum). PLoS One 2014; 9:e89871. [PMID: 24587088 PMCID: PMC3935947 DOI: 10.1371/journal.pone.0089871] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2013] [Accepted: 01/27/2014] [Indexed: 11/18/2022] Open
Abstract
Disassembly of cell wall polysaccharides by various cell wall hydrolases during fruit softening causes structural changes in hemicellulose and pectin that affect the physical properties and softening of tomato fruit. In a previous study, we showed that the changes in pectin during tomato fruit ripening were unique in each fruit tissue. In this study, to clarify the changes in hemicellulose in tissues during tomato fruit ripening, we focused on glucuronoarabinoxylan (GAX) and xyloglucan (XG). GAX was detected only in the skin and inner epidermis of the pericarp using LM11 antibodies, whereas a large increase in XG was detected in all fruit tissues using LM15 antibodies. The activity of hemicellulose degradation enzymes, such as β-xylosidase and α-arabinofuranosidase, decreased gradually during fruit ripening, although the tomato fruits continued to soften. In contrast, GAX and XG biosynthesis-related genes were expressed in all tomato fruit tissues even during ripening, indicating that XG was synthesized throughout the fruit and that GAX may be synthesized only in the vascular bundles and the inner epidermis. Our results suggest that changes in the cell wall architecture and tissue-specific distribution of XG and GAX might be required for the regulation of fruit softening and the maintenance of fruit shape.
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Affiliation(s)
- Ayami Takizawa
- University of Tsukuba, Faculty of Life and Environmental Sciences, Tsukuba, Ibaraki, Japan
| | - Hiromi Hyodo
- University of Tsukuba, Faculty of Life and Environmental Sciences, Tsukuba, Ibaraki, Japan
| | - Kanako Wada
- University of Tsukuba, Faculty of Life and Environmental Sciences, Tsukuba, Ibaraki, Japan
| | - Tadashi Ishii
- University of Tsukuba, Faculty of Life and Environmental Sciences, Tsukuba, Ibaraki, Japan
| | - Shinobu Satoh
- University of Tsukuba, Faculty of Life and Environmental Sciences, Tsukuba, Ibaraki, Japan
| | - Hiroaki Iwai
- University of Tsukuba, Faculty of Life and Environmental Sciences, Tsukuba, Ibaraki, Japan
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