Establishing an infrastructure for collaboration in primate cognition research

MacaqueNet: Advancing comparative behavioural research through large-scale collaboration

There is a vast and ever-accumulating amount of behavioural data on individually recognised animals, an incredible resource to shed light on the ecological and evolutionary drivers of variation in animal behaviour. Yet, the full potential of such data lies in comparative research across taxa with distinct life histories and ecologies. Substantial challenges impede systematic comparisons, one of which is the lack of persistent, accessible and standardised databases. Big-team approaches to building standardised databases offer a solution to facilitating reliable cross-species comparisons. By sharing both data and expertise among researchers, these approaches ensure that valuable data, which might otherwise go unused, become easier to discover, repurpose and synthesise. Additionally, such large-scale collaborations promote a culture of sharing within the research community, incentivising researchers to contribute their data by ensuring their interests are considered through clear sharing guidelines. Active communication with the data contributors during the standardisation process also helps avoid misinterpretation of the data, ultimately improving the reliability of comparative databases. Here, we introduce MacaqueNet, a global collaboration of over 100 researchers (https://macaquenet.github.io/) aimed at unlocking the wealth of cross-species data for research on macaque social behaviour. The MacaqueNet database encompasses data from 1981 to the present on 61 populations across 14 species and is the first publicly searchable and standardised database on affiliative and agonistic animal social behaviour. We describe the establishment of MacaqueNet, from the steps we took to start a large-scale collective, to the creation of a cross-species collaborative database and the implementation of data entry and retrieval protocols. We share MacaqueNet's component resources: an R package for data standardisation, website code, the relational database structure, a glossary and data sharing terms of use. With all these components openly accessible, MacaqueNet can act as a fully replicable template for future endeavours establishing large-scale collaborative comparative databases.

I've just seen a face: further search for face pareidolia in chimpanzees (Pan troglodytes)

Introduction

Seeing faces in random patterns, such as in clouds, is known as pareidolia. Two possible mechanisms can cause pareidolia: a bottom-up mechanism that automatically detects inverted triangle or top-heavy patterns, and a top-down mechanism that actively seeks out faces. Pareidolia has been reported in nonhuman animals as well. In chimpanzees, it has been suggested that the bottom-up mechanism is involved in their pareidolic perception, but the extent of the contribution of the top-down mechanism remains unclear. This study investigated the role of topdown control in face detection in chimpanzees.

Methods

After being trained on an oddity task in which they had to select a noise pattern where a face (either human or chimpanzee) or a letter (Kanji characters) was superimposed among three patterns, they were tested with noise patterns that did not contain any target stimuli.

Results

When the average images of the patterns selected by the chimpanzees in these test trials were analyzed and compared with those that were not selected (i.e., difference images), a clear non-random structure was found in the difference images. In contrast, such structures were not evident in the difference images obtained by assuming that one of the three patterns was randomly selected.

Discussion

These results suggest that chimpanzees may have been attempting to find "faces" or "letters"in random patterns possibly through some form of top-down processing.

Contrasting two versions of the 4-cup 2-item disjunctive syllogism task in great apes

Chimpanzees excel at inference tasks which require that they search for a single food item from partial information. Yet, when presented with 2-item tasks which test the same inference operation, chimpanzees show a consistent breakdown in performance. Here we test a diverse zoo-housed cohort (n = 24) comprising all 4 great ape species under the classic 4-cup 2-item task, previously administered to children and chimpanzees, and a modified task administered to baboons. The aim of this study is to delineate whether the divergent results reported from the literature are taxonomic differences or artefacts of their methodologies, while extending the literature to cover the remaining great ape species. We find that apes adaptively adjust their choice behaviour in both variants of the task, but that they perform better in trials where the information provided rules out a location rather than removes one of the food items. In a second experiment involving those subjects who passed the first, along with a group of naïve subjects, we test whether subjects were able to apply the logical operation selectively by including control trials where the correct response is reversed. Performance in standard trials breaks down with the addition of control trials, meaning that if apes did solve the first experiment logically, they are not capable of applying that logic flexibly. Considering this finding, we conclude that a 4-cup 2-item task may not be a suitable test of logical reasoning in great apes.

Salivary cortisol captures endocrine response to an acute stressor in captive female tufted capuchin monkeys (Sapajus apella)

Measuring glucocorticoids such as cortisol is a useful tool for exploring relationships among behavior, physiology, and well-being in primates. As cortisol circulates in blood, it moves into biological matrices such as hair, urine, feces, and saliva. Saliva sampling is a simple, noninvasive method to measure cortisol that can be easily implemented by training animals to voluntarily provide samples. The temporal lag between elevation of cortisol in the blood and elevation of cortisol in saliva likely varies by species and must be characterized to identify appropriate sampling regimens. In the present study we characterized the time course of cortisol changes in saliva following an acute psychological stressor in captive tufted capuchin monkeys (Sapajus apella). We trained eight free-moving female tufted capuchin monkeys to voluntarily produce clean saliva samples. We exposed them to the acute stressor of a veterinary catch net and observed behavior pre and post exposure. We collected salivary samples immediately pre exposure (0 min) and 30, 45, 60, 75, 90, and 120 min after exposure. Salivary cortisol was quantified using a Salimetrics kit. Behavioral and cortisol measures were compared within individuals to a control condition in which no stressor was presented. Capuchins showed a clear behavioral response to the stressor by demonstrating increased freezing and pacing, decreased feed foraging, nonsocial play, and scratching, and decreased willingness to provide saliva samples after stressor presentation. After stressor presentation, average salivary cortisol began to increase at 30 min and continued to increase through the 120 min sample period. There was individual variation in absolute cortisol levels, the timing of the cortisol increase, and the timing of the peak. Our results suggest that no single time-point can be reliably used to evaluate salivary cortisol response to an acute stressor across individuals, and instead we recommend the collection of a prolonged time series.

Conserved and differing functions of the endocrine system across different social systems - oxytocin as a case study

A key goal of the field of endocrinology has been to understand the hormonal mechanisms that drive social behavior and influence reactions to others, such as oxytocin. However, it has sometimes been challenging to understand which aspects and influences of hormonal action are conserved and common among mammalian species, and which effects differ based on features of these species, such as social system. This challenge has been exacerbated by a focus on a relatively small number of traditional model species. In this review, we first demonstrate the benefits of using non-traditional models for the study of hormones, with a focus on oxytocin as a case study in adding species with diverse social systems. We then expand our discussion to explore differing effects of oxytocin (and its response to behavior) within a species, with a particular focus on relationship context and social environment among primate species. Finally, we suggest key areas for future exploration of oxytocin's action centrally and peripherally, and how non-traditional models can be an important resource for understanding the breadth of oxytocin's potential effects.

Compromise or choose: shared movement decisions in wild vulturine guineafowl

Shared-decision making is beneficial for the maintenance of group-living. However, little is known about whether consensus decision-making follows similar processes across different species. Addressing this question requires robust quantification of how individuals move relative to each other. Here we use high-resolution GPS-tracking of two vulturine guineafowl (Acryllium vulturinum) groups to test the predictions from a classic theoretical model of collective motion. We show that, in both groups, all individuals can successfully initiate directional movements, although males are more likely to be followed than females. When multiple group members initiate simultaneously, follower decisions depend on directional agreement, with followers compromising directions if the difference between them is small or choosing the majority direction if the difference is large. By aligning with model predictions and replicating the findings of a previous field study on olive baboons (Papio anubis), our results suggest that a common process governs collective decision-making in moving animal groups.

Tolerant macaque species are less impulsive and reactive

Inhibitory control, the inhibition of impulsive behaviours, is believed to be key in navigating a complex social environment. Species characterised by higher social tolerance, living in more complex groups, with more diverse relationships, face higher uncertainty regarding the outcome of social interactions and, therefore, would benefit from employing more inhibitory strategies. To date, little is known about the selective forces that favour the evolution of inhibitory control. In this study, we compared inhibitory control skills in three closely related macaque species which differ in their social tolerance style. We tested 66 macaques from two institutions (Macaca mulatta, low tolerance; M. fascicularis, medium tolerance; and M. tonkeana, high tolerance) using a battery of validated inhibitory control touchscreen tasks. Higher social tolerance was associated with enhanced inhibitory control performances. More tolerant species were less impulsive and less distracted by pictures of unknown conspecifics. Interestingly, we did not find evidence that social tolerance degree was associated with performance in reversal learning. Overall, our results support the hypothesis that evolution has promoted the development of socio-cognitive skills to cope with the demands related to the complexity of the social environment.

Left or right, that is the question: use of egocentric frame of reference and the right-eye advantage for understanding gestural signs in bottlenose dolphins (Tursiops truncatus)

How do bottlenose dolphins visually perceive the space around them? In particular, what cues do they use as a frame of reference for left-right perception? To address this question, we examined the dolphin's responses to various manipulations of the spatial relationship between the dolphin and the trainer by using gestural signs for actions given by the trainer, which have different meanings in the left and right hands. When the dolphins were tested with their backs to the trainer (Experiment 1) or in an inverted position underwater (Experiments 2 and 3), correct responses from the trainer's perspective were maintained for signs related to movement direction instructions. In contrast, reversed responses were frequently observed for signs that required different sounds for the left and right hands. When the movement direction instructions were presented with symmetrical graphic signs such as " × " and "●", accuracy decreased in the inverted posture (Experiment 3). Furthermore, when the signs for sounds were presented from either the left or right side of the dolphin's body, performance was better when the side of the sign movement coincided with the body side on which it was presented than when it was mismatched (Experiment 4). In the final experiment, when one eye was covered with an eyecup, the results showed that, as in the case of body-side presentation, performance was better when the open eye coincided with the side on which the sign movement was presented. These results indicate that dolphins used the egocentric frame for visuospatial cognition. In addition, they showed better performances when the gestural signs were presented to the right eye, suggesting the possibility of a left-hemispheric advantage in the dolphin's visuospatial cognition.

From fossils to mind

Fossil endocasts record features of brains from the past: size, shape, vasculature, and gyrification. These data, alongside experimental and comparative evidence, are needed to resolve questions about brain energetics, cognitive specializations, and developmental plasticity. Through the application of interdisciplinary techniques to the fossil record, paleoneurology has been leading major innovations. Neuroimaging is shedding light on fossil brain organization and behaviors. Inferences about the development and physiology of the brains of extinct species can be experimentally investigated through brain organoids and transgenic models based on ancient DNA. Phylogenetic comparative methods integrate data across species and associate genotypes to phenotypes, and brains to behaviors. Meanwhile, fossil and archeological discoveries continuously contribute new knowledge. Through cooperation, the scientific community can accelerate knowledge acquisition. Sharing digitized museum collections improves the availability of rare fossils and artifacts. Comparative neuroanatomical data are available through online databases, along with tools for their measurement and analysis. In the context of these advances, the paleoneurological record provides ample opportunity for future research. Biomedical and ecological sciences can benefit from paleoneurology's approach to understanding the mind as well as its novel research pipelines that establish connections between neuroanatomy, genes and behavior.

Great ape cognition is structured by stable cognitive abilities and predicted by developmental conditions

Great ape cognition is used as a reference point to specify the evolutionary origins of complex cognitive abilities, including in humans. This research often assumes that great ape cognition consists of cognitive abilities (traits) that account for stable differences between individuals, which change and develop in response to experience. Here, we test the validity of these assumptions by assessing repeatability of cognitive performance among captive great apes (Gorilla gorilla, Pongo abelii, Pan paniscus, Pan troglodytes) in five tasks covering a range of cognitive domains. We examine whether individual characteristics (age, group, test experience) or transient situational factors (life events, testing arrangements or sociality) influence cognitive performance. Our results show that task-level performance is generally stable over time; four of the five tasks were reliable measurement tools. Performance in the tasks was best explained by stable differences in cognitive abilities (traits) between individuals. Cognitive abilities were further correlated, suggesting shared cognitive processes. Finally, when predicting cognitive performance, we found stable individual characteristics to be more important than variables capturing transient experience. Taken together, this study shows that great ape cognition is structured by stable cognitive abilities that respond to different developmental conditions.

The CANDOR corpus: Insights from a large multimodal dataset of naturalistic conversation

People spend a substantial portion of their lives engaged in conversation, and yet, our scientific understanding of conversation is still in its infancy. Here, we introduce a large, novel, and multimodal corpus of 1656 conversations recorded in spoken English. This 7+ million word, 850-hour corpus totals more than 1 terabyte of audio, video, and transcripts, with moment-to-moment measures of vocal, facial, and semantic expression, together with an extensive survey of speakers' postconversation reflections. By taking advantage of the considerable scope of the corpus, we explore many examples of how this large-scale public dataset may catalyze future research, particularly across disciplinary boundaries, as scholars from a variety of fields appear increasingly interested in the study of conversation.

Following the human point: Research with nonhuman animals since Povinelli, Nelson, and Boysen (1990)

For this special issue in honor of Dr. Sarah (Sally) Boysen's career, we review studies on point following in nonhuman animals. Of the 126 papers that we documented on this topic published since the publication of Povinelli, Nelson, and Boysen (1990, Journal of Comparative Psychology, 104, 203-210), 94 (75%) were published in the past 15 years, including 22 in the past 5 years, indicating that this topic is still an active area of interest in the field of animal behavior and cognition. We present results of a survey of publication trends, discussing the species tested and the sample sizes, and we note methodological considerations and current multilaboratory approaches. We then categorize and synthesize the research questions addressed in these studies, which have been at both the ultimate level (e.g., questions related to evolutionary adaptiveness and phylogenetic differences) and proximate level (e.g., questions related to experiential and temperamental processes). Throughout, we consider future directions for this area of research.

The use of gaze to study cognition: limitations, solutions, and applications to animal welfare

The study of gaze responses, typically using looking time paradigms, has become a popular approach to improving our understanding of cognitive processes in non-verbal individuals. Our interpretation of data derived from these paradigms, however, is constrained by how we conceptually and methodologically approach these problems. In this perspective paper, we outline the application of gaze studies in comparative cognitive and behavioral research and highlight current limitations in the interpretation of commonly used paradigms. Further, we propose potential solutions, including improvements to current experimental approaches, as well as broad-scale benefits of technology and collaboration. Finally, we outline the potential benefits of studying gaze responses from an animal welfare perspective. We advocate the implementation of these proposals across the field of animal behavior and cognition to aid experimental validity, and further advance our knowledge on a variety of cognitive processes and welfare outcomes.

Optionality in animal communication: a novel framework for examining the evolution of arbitrariness

A critical feature of language is that the form of words need not bear any perceptual similarity to their function - these relationships can be 'arbitrary'. The capacity to process these arbitrary form-function associations facilitates the enormous expressive power of language. However, the evolutionary roots of our capacity for arbitrariness, i.e. the extent to which related abilities may be shared with animals, is largely unexamined. We argue this is due to the challenges of applying such an intrinsically linguistic concept to animal communication, and address this by proposing a novel conceptual framework highlighting a key underpinning of linguistic arbitrariness, which is nevertheless applicable to non-human species. Specifically, we focus on the capacity to associate alternative functions with a signal, or alternative signals with a function, a feature we refer to as optionality. We apply this framework to a broad survey of findings from animal communication studies and identify five key dimensions of communicative optionality: signal production, signal adjustment, signal usage, signal combinatoriality and signal perception. We find that optionality is widespread in non-human animals across each of these dimensions, although only humans demonstrate it in all five. Finally, we discuss the relevance of optionality to behavioural and cognitive domains outside of communication. This investigation provides a powerful new conceptual framework for the cross-species investigation of the origins of arbitrariness, and promises to generate original insights into animal communication and language evolution more generally.

Turn-taking skills in mammals: A systematic review into development and acquisition

How human language evolved remains one of the most intriguing questions in science, and different approaches have been used to tackle this question. A recent hypothesis, the Interaction Engine Hypothesis, postulates that language was made possible through the special capacity for social interaction involving different social cognitive skills (e.g., joint attention, common ground) and specific characteristics such as face-to-face interaction, mutual gaze and turn-taking, the exchange of rapid communicative turns. Recently, it has been argued that this turn-taking infrastructure may be a foundational and ancient mechanism of the layered system of language because communicative turn-taking has been found in human infants and across several non-human primate species. Moreover, there is some evidence for turn-taking in different mammalian taxa, especially those capable of vocal learning. Surprisingly, however, the existing studies have mainly focused on turn-taking production of adult individuals, while little is known about its emergence and development in young individuals. Hence, the aim of the current paper was 2-fold: First, we carried out a systematic review of turn-taking development and acquisition in mammals to evaluate possible research bias and existing gaps. Second, we highlight research avenues to spur more research into this domain and investigate if distinct turn-taking elements can be found in other non-human animal species. Since mammals exhibit an extended development period, including learning and strong parental care, they represent an excellent model group in which to investigate the acquisition and development of turn-taking abilities. We performed a systematic review including a wide range of terms and found 21 studies presenting findings on turn-taking abilities in infants and juveniles. Most of these studies were from the last decade, showing an increased interest in this field over the years. Overall, we found a considerable variation in the terminologies and methodological approaches used. In addition, studies investigating turn-taking abilities across different development periods and in relation to different social partners were very rare, thereby hampering direct, systematic comparisons within and across species. Nonetheless, the results of some studies suggested that specific turn-taking elements are innate, while others are acquired during development (e.g., flexibility). Finally, we pinpoint fruitful research avenues and hypotheses to move the field of turn-taking development forward and improve our understanding of the impact of turn-taking on language evolution.

The primate workplace: Cooperative decision-making in human and non-human primates

The success of group foraging in primates is not only determined by ecological and social factors. It is also influenced by cognition. Group foraging success is constrained, for instance, by the challenges of coordination, synchrony and decision-making, and it is enhanced by the ability to share, learn from others and coordinate actions. However, what we currently know about the cognition of individuals in groups comes primarily from experiments on dyads, and what we know of the effect of ecological factors on group dynamics comes from larger wild groups. Our current knowledge of primate group behaviour is thus incomplete. In this review, we identify a gap in our knowledge of primate group dynamics between the dyadic studies on primate cooperation and the large group observational studies of behavioural ecology. We highlight the potential for controlled experimental studies on coordination and cooperation in primate groups. Currently, these exist primarily as studies of dyads, and these do not go far enough in testing limits of group-level behaviours. Controlled studies on primate groups beyond the dyad would be highly informative regarding the bounds of non-human primate collaboration. We look to the literature on how humans behave in groups, specifically from organisational psychology, draw parallels between human and non-human group dynamics and highlight approaches that could be applied across disciplines. Organisational psychology is explicitly concerned with the interactions between individuals in a group and the emergent properties at the group-level of these decisions. We propose that some of the major shortfalls in our understanding of primate social cognition and group dynamics can be filled by using approaches developed by organisational psychologists, particularly regarding the effects of group size and composition on group-level cooperation. To illustrate the potential applications, we provide a list of research questions drawn from organisational psychology that could be applied to non-human primates.

Primate cognition in zoos: Reviewing the impact of zoo-based research over 15 years

Primate cognition research is reliant on access to members of the study sp ecies and logistical infrastructures to conduct observations and experiments. Historically founded in research centers and private collections, and spreading to modern zoos, sanctuaries, and the field, primate cognition has been investigated in diverse settings, each with benefits and challenges. In our systematic review of 12 primatology, animal behavior, and animal cognition journals over the last 15 years, we turn a spotlight on zoos to quantify their current impact on the field and to highlight their potential as robust contributors to future work. To put zoo-based research in context, we compare zoos to three other site types: university-owned or independent research centers, sanctuaries, and field sites. We assess the contributions of zoos across several critical considerations in primate cognition research, including number of investigations, species diversity, sample size, research topic diversity, and methodology. We identified 1119 publications reporting studies of primate cognition, almost 25% of which report research conducted in zoos. Across publications, zoo-based research has greater species diversity than research centers and covers a diverse range of research topics. Although our review is merely a snapshot of primate cognition research, our findings suggest that zoos may present advantages to researchers regarding species diversity, and lack some of the methodological constraints of field sites, allowing greater ease of access to a diverse range of subjects for cognition investigations. We suggest that zoos have great potential as key contributors for future investigations in primate cognition. Finally, we shed light on the symbiotic relationship that can emerge between researchers and zoos, forming partnerships that bring unique advantages to both parties.

The Evolution of Cognitive Control in Lemurs

Cognitive control, or executive function, is a key feature of human cognition, allowing individuals to plan, acquire new information, or adopt new strategies when the circumstances change. Yet it is unclear which factors promote the evolution of more sophisticated executive-function abilities such as those possessed by humans. Examining cognitive control in nonhuman primates, our closest relatives, can help to identify these evolutionary processes. Here, we developed a novel battery to experimentally measure multiple aspects of cognitive control in primates: temporal discounting, motor inhibition, short-term memory, reversal learning, novelty responses, and persistence. We tested lemur species with targeted, independent variation in both ecological and social features (ruffed lemurs, Coquerel's sifakas, ring-tailed lemurs, and mongoose lemurs; N = 39) and found that ecological rather than social characteristics best predicted patterns of cognitive control across these species. This highlights the importance of integrating cognitive data with species' natural history to understand the origins of complex cognition.

Relationship between hypertrophy, strength gains and tensiomyography adaptations: a moderator role of contraction duration

The aim of the study was to investigate how the relationship between resistance training-induced hypertrophy, strength, and passive contractile adaptations is affected by contraction duration. Twenty university students (11 males) were randomly assigned to either the fast eccentric/fast concentric phase group (F/F; 1 s both phases) or the slow eccentric/fast concentric phase group (S/F; 4 s and 1 s, respectively). Both experimental groups completed a 7-week biceps curl training programme with a total of 14 sessions (2 days/week). Elbow flexor muscle thickness (MT), one-repetition maximum (1RM), and tensiomyographic (TMG) parameters (radial displacement-D_m and contraction time-T_c) were assessed. The percentage change (∆) in MT correlated significantly with the ∆1RM only in the S/F group (r = 0.712, p < 0.05). Both groups demonstrated significant negative associations between ∆MT and ∆D_m (r = 0.717-0.760, p < 0.01). Conversely, no significance was found between ∆MT and ∆T_c (F/F: r = -0.398, p = 0.255; S/F: r = 0.410, p = 0.239), ∆1RM and ∆T_c (F/F: r = -0.278, p = 0.436; S/F: r = 0.223, p = 0.536), nor ∆1RM and ∆D_m (F/F: r = - 0.131, p = 0.719; S/F: r = - 0.351, p = 0.320). The main findings indicate that the relationship between hypertrophy and strength gains is significantly stronger when resistance training was paced with slower eccentric contractions comparing to fast ones. On the other hand, reduced D_m values indicate increase in MT regardless of contraction duration, while strength gains are not correlated with corresponding TMG changes.

The evolutionary origins of syntax: Event cognition in nonhuman primates

Languages tend to encode events from the perspective of agents, placing them first and in simpler forms than patients. This agent bias is mirrored by cognition: Agents are more quickly recognized than patients and generally attract more attention. This leads to the hypothesis that key aspects of language structure are fundamentally rooted in a cognition that decomposes events into agents, actions, and patients, privileging agents. Although this type of event representation is almost certainly universal across languages, it remains unclear whether the underlying cognition is uniquely human or more widespread in animals. Here, we review a range of evidence from primates and other animals, which suggests that agent-based event decomposition is phylogenetically older than humans. We propose a research program to test this hypothesis in great apes and human infants, with the goal to resolve one of the major questions in the evolution of language, the origins of syntax.

Individual Variation in Response to Novel Food in Captive Capuchin Monkeys (Sapajus spp.)

How animals respond to novelty may have important outcomes in terms of fitness. On the one hand, aversion to novel stimuli may reduce the risks of consuming potentially toxic food or encountering predators. On the other hand, the propensity to approach novel stimuli may allow individuals to explore novel food sources and more flexibly adapt to novel challenges. Different species and individuals may find different ways to balance the costs and benefits that novelty posits. To date, however, little is known on how response to novel food varies across individuals of the same species depending on their previous experience with novelty, risk attitude and presence of higher-ranking conspecifics. In this study, we assessed individual variation in response to novel food by testing captive capuchin monkeys (Sapajus spp.) in an unconstrained social context, where all individuals in a group were able to access the testing area on a voluntary basis. We provided familiar and novel food to 23 study subjects belonging to four social groups differing in (i) previous experience with novel food, (ii) risk attitude (as assessed by a previous risky decision-making task), and (iii) dominance rank. We predicted that, as individuals may generalize their previous experience to novel contexts, those with more previous experience with novel food would be less neophobic than those with less experience. Moreover, if neophobia is a facet of the individual’s risk attitude, we predicted that more risk-prone individuals would be less neophobic than less risk-prone ones. Finally, individuals might flexibly modify their food choices according to the presence of conspecifics; in this respect, we predicted that, in response to monopolization of preferred resources by higher-ranking individuals, lower-ranking individuals would prefer familiar over novel food in the absence of higher-ranking individuals, but would modify their preference in favor of novel food in the presence of higher-ranking individuals. None of these predictions were supported by our results. We observed, however, that neophobia, measured as the latency to retrieve a food item, was more pronounced in lower-ranking than higher-ranking individuals, and that males showed a generally stronger bias than females toward a quicker retrieval of familiar food.

Gut microbiota of ring-tailed lemurs (Lemur catta) vary across natural and captive populations and correlate with environmental microbiota

BACKGROUND

Inter-population variation in host-associated microbiota reflects differences in the hosts' environments, but this characterization is typically based on studies comparing few populations. The diversity of natural habitats and captivity conditions occupied by any given host species has not been captured in these comparisons. Moreover, intraspecific variation in gut microbiota, generally attributed to diet, may also stem from differential acquisition of environmental microbes-an understudied mechanism by which host microbiomes are directly shaped by environmental microbes. To more comprehensively characterize gut microbiota in an ecologically flexible host, the ring-tailed lemur (Lemur catta; n = 209), while also investigating the role of environmental acquisition, we used 16S rRNA sequencing of lemur gut and soil microbiota sampled from up to 13 settings, eight in the wilderness of Madagascar and five in captivity in Madagascar or the U.S. Based on matched fecal and soil samples, we used microbial source tracking to examine covariation between the two types of consortia.

RESULTS

The diversity of lemur gut microbes varied markedly within and between settings. Microbial diversity was not consistently greater in wild than in captive lemurs, indicating that this metric is not necessarily an indicator of host habitat or environmental condition. Variation in microbial composition was inconsistent both with a single, representative gut community for wild conspecifics and with a universal 'signal of captivity' that homogenizes the gut consortia of captive animals. Despite the similar, commercial diets of captive lemurs on both continents, lemur gut microbiomes within Madagascar were compositionally most similar, suggesting that non-dietary factors govern some of the variability. In particular, soil microbial communities varied across geographic locations, with the few samples from different continents being the most distinct, and there was significant and context-specific covariation between gut and soil microbiota.

CONCLUSIONS

As one of the broadest, single-species investigations of primate microbiota, our study highlights that gut consortia are sensitive to multiple scales of environmental differences. This finding begs a reevaluation of the simple 'captive vs. wild' dichotomy. Beyond the important implications for animal care, health, and conservation, our finding that environmental acquisition may mediate aspects of host-associated consortia further expands the framework for how host-associated and environmental microbes interact across different microbial landscapes.

The structure of executive functions in preschool children and chimpanzees

Executive functions (EF) are a core aspect of cognition. Research with adult humans has produced evidence for unity and diversity in the structure of EF. Studies with preschoolers favour a 1-factor model, in which variation in EF tasks is best explained by a single underlying trait on which all EF tasks load. How EF are structured in nonhuman primates remains unknown. This study starts to fill this gap through a comparative, multi-trait multi-method test battery with preschoolers (N = 185) and chimpanzees (N = 55). The battery aimed at measuring working memory updating, inhibition, and attention shifting with three non-verbal tasks per function. For both species the correlations between tasks were low to moderate and not confined to tasks within the same putative function. Factor analyses produced some evidence for the unity of executive functions in both groups, in that our analyses revealed shared variance. However, we could not conclusively distinguish between 1-, 2- or 3-factor models. We discuss the implications of our findings with respect to the ecological validity of current psychometric research.

The evolution of coordination: a phylogenetic meta-analysis and systematic review

To solve many cooperative problems, humans must have evolved the ability to solve physical problems in their environment by coordinating their actions. There have been many studies conducted across multiple different species regarding coordinating abilities. These studies aim to provide data which will help illuminate the evolutionary origins of cooperative problem solving and coordination. However, it is impossible to make firm conclusions about the evolutionary origins of coordinating abilities without a thorough comparative analysis of the existing data. Furthermore, there may be certain aspects of the literature that make it very difficult to confidently address evolutionary and meta-analytic questions. This study aimed to rectify this by using meta-analysis, phylogenetic analysis and systematic review to analyse the data already obtained across multiple studies, and to assess the reliability of this data. We found that many studies did not provide the information necessary for meta-analysis, or were not comparable enough to other studies to be included in analyses, meaning meta-analyses were underpowered or could not be conducted due to low samples of both studies and different species. Overall, we found that many studies reported small positive effects across studies, but the standard errors of these effects frequently traversed zero.

Early Alzheimer's disease-like reductions in gray matter and cognitive function with aging in nonhuman primates

Introduction

Age-related neuropathology associated with sporadic Alzheimer's disease (AD) often develops well before the onset of symptoms. Given AD's long preclinical period, translational models are needed to identify early signatures of pathological decline.

Methods

Using structural magnetic resonance imaging and cognitive assessments, we examined the relationships among age, cognitive performance, and neuroanatomy in 48 vervet monkeys (Chlorocebus aethiops sabaeus) ranging from young adults to very old.

Results

We found negative associations of age with cortical gray matter volume (P = .003) and the temporal-parietal cortical thickness meta-region of interest (P = .001). Additionally, cortical gray matter volumes predicted working memory at approximately 1-year follow-up (correct trials at the 20s delay [P = .008]; correct responses after longer delays [P = .004]).

Discussion

Cortical gray matter diminishes with age in vervets in regions relevant to AD, which may increase risk of cognitive impairment. This study lays the groundwork for future investigations to test therapeutics to delay or slow pathological decline.

Reforms to improve reproducibility and quality must be coordinated across the research ecosystem: the view from the UKRN Local Network Leads

Many disciplines are facing a “reproducibility crisis”, which has precipitated much discussion about how to improve research integrity, reproducibility, and transparency. A unified effort across all sectors, levels, and stages of the research ecosystem is needed to coordinate goals and reforms that focus on open and transparent research practices. Promoting a more positive incentive culture for all ecosystem members is also paramount. In this commentary, we—the Local Network Leads of the UK Reproducibility Network—outline our response to the UK House of Commons Science and Technology Committee’s inquiry on research integrity and reproducibility. We argue that coordinated change is needed to create (1) a positive research culture, (2) a unified stance on improving research quality, (3) common foundations for open and transparent research practice, and (4) the routinisation of this practice. For each of these areas, we outline the roles that individuals, institutions, funders, publishers, and Government can play in shaping the research ecosystem. Working together, these constituent members must also partner with sectoral and coordinating organisations to produce effective and long-lasting reforms that are fit-for-purpose and future-proof. These efforts will strengthen research quality and create research capable of generating far-reaching applications with a sustained impact on society.

The evolution of quantitative sensitivity

The ability to represent approximate quantities appears to be phylogenetically widespread, but the selective pressures and proximate mechanisms favouring this ability remain unknown. We analysed quantity discrimination data from 672 subjects across 33 bird and mammal species, using a novel Bayesian model that combined phylogenetic regression with a model of number psychophysics and random effect components. This allowed us to combine data from 49 studies and calculate the Weber fraction (a measure of quantity representation precision) for each species. We then examined which cognitive, socioecological and biological factors were related to variance in Weber fraction. We found contributions of phylogeny to quantity discrimination performance across taxa. Of the neural, socioecological and general cognitive factors we tested, cortical neuron density and domain-general cognition were the strongest predictors of Weber fraction, controlling for phylogeny. Our study is a new demonstration of evolutionary constraints on cognition, as well as of a relation between species-specific neuron density and a particular cognitive ability.

This article is part of the theme issue ‘Systems neuroscience through the lens of evolutionary theory’.

Increasing animal cognition research in zoos

Animal cognition covers various mental processes including perception, learning, decision-making and memory, and animal behavior is often used as a proxy for measuring cognition. Animal cognition/behavior research has multiple benefits; it provides fundamental knowledge of animal biology and evolution but can also have applied conservation and welfare applications. Zoos provide an excellent yet relatively untapped resource for animal cognition research, because they house a wide variety of species-many of which are under threat-and allow close observation and relatively high experimental control compared to the wild. Multi-zoo collaboration leads to increased sample size and species representation, which in turn leads to more robust science. However, there are salient challenges associated with zoo-based cognitive research, which are animal-based (e.g., small sample sizes at single zoos, untrained/unhabituated subjects, side effects) and human-based (e.g., time restrictions, safety concerns, and perceptions of animals interacting with unnatural technology or apparatus). We aim to increase the understanding and subsequent uptake of animal cognition research in zoos, by transparently outlining the main benefits and challenges. Importantly, we use our own research (1) a study on novelty responses in hornbills, and (2) a multi-site collaboration called the "ManyBirds" Project to demonstrate how challenges may be overcome. These potential options include using "drop and go" apparatuses that require no training, close human contact or animal separation. This study is aimed at zoo animal care and research staff, as well as external researchers interested in zoo-based studies.

Improving rigor and reproducibility in nonhuman primate research

Nonhuman primates (NHPs) are a critical component of translational/preclinical biomedical research due to the strong similarities between NHP and human physiology and disease pathology. In some cases, NHPs represent the most appropriate, or even the only, animal model for complex metabolic, neurological, and infectious diseases. The increased demand for and limited availability of these valuable research subjects requires that rigor and reproducibility be a prime consideration to ensure the maximal utility of this scarce resource. Here, we discuss a number of approaches that collectively can contribute to enhanced rigor and reproducibility in NHP research.

The Animal Welfare Science of Working Dogs: Current Perspectives on Recent Advances and Future Directions

Working dogs are prevalent throughout our societies, assisting people in diverse contexts, from explosives detection and livestock herding, to therapy partners. Our scientific exploration and understanding of animal welfare have grown dramatically over the last decade. As community attitudes toward the use of animals continue to change, applying this new knowledge of welfare to improve the everyday lives of working dogs will underpin the sustainability of working with dogs in these roles. The aim of this report was to consider the scientific studies of working dogs from the last decade (2011–2021) in relation to modern ethics, human interaction, and the five domains of animal welfare: nutrition, environment, behavioral interaction, physical health, and mental state. Using this framework, we were able to analyze the concept and contribution of working dog welfare science. Noting some key advances across the full working dog life cycle, we identify future directions and opportunities for interdisciplinary research to optimize dog welfare. Prioritizing animal welfare in research and practice will be critical to assure the ongoing relationship between dogs and people as co-workers.

Heterogeneity of performances in several inhibitory control tasks: male rhesus macaques are more easily distracted than females

Inhibitory control, the ability to override a dominant response, is crucial in many aspects of everyday life. In animal studies, striking individual variations are often largely ignored and their causes rarely considered. Hence, our aims were to systematically investigate individual variability in inhibitory control, to replicate the most common causes of individual variation (age, sex and rank) and to determine if these factors had a consistent effect on three main components of inhibitory control (inhibition of a distraction, inhibition of an action, inhibition of a cognitive set). We tested 21 rhesus macaques (Macaca mulatta) in a battery of validated touchscreen tasks. We first found individual variations in all inhibitory control performances. We then demonstrated that males had poorer performances to inhibit a distraction and that middle-aged individuals exhibited poorer performance in the inhibition of a cognitive set. Hence, the factors of age and sex were not consistently associated with the main components of inhibitory control, suggesting a multi-faceted structure. The rank of the subjects did not influence any inhibitory control performances. This study adopts a novel approach for animal behaviour studies and gives new insight into the individual variability of inhibitory control which is crucial to understand its evolutionary underpinnings.

Aging-related Alzheimer's disease-like neuropathology and functional decline in captive vervet monkeys (Chlorocebus aethiops sabaeus)

Age-related neurodegeneration characteristic of late-onset Alzheimer's disease (LOAD) begins in middle age, well before symptoms. Translational models to identify modifiable risk factors are needed to understand etiology and identify therapeutic targets. Here, we outline the evidence supporting the vervet monkey (Chlorocebus aethiops sabaeus) as a model of aging-related AD-like neuropathology and associated phenotypes including cognitive function, physical function, glucose handling, intestinal physiology, and CSF, blood, and neuroimaging biomarkers. This review provides the most comprehensive multisystem description of aging in vervets to date. This review synthesizes a large body of evidence that suggests that aging vervets exhibit a coordinated suite of traits consistent with early AD and provide a powerful, naturally occurring model for LOAD. Notably, relationships are identified between AD-like neuropathology and modifiable risk factors. Gaps in knowledge and key limitations are provided to shape future studies to illuminate mechanisms underlying divergent neurocognitive aging trajectories and to develop interventions that increase resilience to aging-associated chronic disease, particularly, LOAD.

Learning and motor inhibitory control in crows and domestic chickens

Cognitive abilities allow animals to navigate through complex, fluctuating environments. In the present study, we tested the performance of a captive group of eight crows, Corvus corone and 10 domestic chickens, Gallus gallus domesticus, in the cylinder task, as a test of motor inhibitory control and reversal learning as a measure of learning ability and behavioural flexibility. Four crows and nine chickens completed the cylinder task, eight crows and six chickens completed the reversal learning experiment. Crows performed better in the cylinder task compared with chickens. In the reversal learning experiment, species did not significantly differ in the number of trials until the learning criterion was reached. The performance in the reversal learning experiment did not correlate with performance in the cylinder task in chickens. Our results suggest crows to possess better motor inhibitory control compared with chickens. By contrast, learning performance in a reversal learning task did not differ between the species, indicating similar levels of behavioural flexibility. Interestingly, we describe notable individual differences in performance. We stress the importance not only to compare cognitive performance between species but also between individuals of the same species when investigating the evolution of cognitive skills.

Extending the Reach of Tooling Theory: A Neurocognitive and Phylogenetic Perspective

Tool use research has suffered from a lack of consistent theoretical frameworks. There is a plethora of tool use definitions and the most widespread ones are so inclusive that the behaviors that fall under them arguably do not have much in common. The situation is aggravated by the prevalence of anecdotes, which have played an undue role in the literature. In order to provide a more rigorous foundation for research and to advance our understanding of the interrelation between tool use and cognition, we suggest the adoption of Fragaszy and Mangalam's (2018) tooling framework, which is characterized by the creation of a body-plus-object system that manages a mechanical interface between tool and surface. Tooling is limited to a narrower suite of behaviors than tool use, which might facilitate its neurocognitive investigation. Indeed, evidence in the literature indicates that tooling has distinct neurocognitive underpinnings not shared by other activities typically classified as tool use, at least in primates. In order to understand the extent of tooling incidences in previous research, we systematically surveyed the comprehensive tool use catalog by Shumaker et al. (2011). We identified 201 tool use submodes, of which only 81 could be classified as tooling, and the majority of the tool use examples across species were poorly supported by evidence. Furthermore, tooling appears to be phylogenetically less widespread than tool use, with the greatest variability found in the primate order. However, in order to confirm these findings and to understand the evolution and neurocognitive mechanisms of tooling, more systematic research will be required in the future, particularly with currently underrepresented taxa.

Extraordinary claims, extraordinary evidence? A discussion

Roberts (2020, Learning & Behavior, 48[2], 191-192) discussed research claiming honeybees can do arithmetic. Some readers of this research might regard such claims as unlikely. The present authors used this example as a basis for a debate on the criterion that ought to be used for publication of results or conclusions that could be viewed as unlikely by a significant number of readers, editors, or reviewers.

The application of noninvasive, restraint-free eye-tracking methods for use with nonhuman primates

Over the past 50 years there has been a strong interest in applying eye-tracking techniques to study a myriad of questions related to human and nonhuman primate psychological processes. Eye movements and fixations can provide qualitative and quantitative insights into cognitive processes of nonverbal populations such as nonhuman primates, clarifying the evolutionary, physiological, and representational underpinnings of human cognition. While early attempts at nonhuman primate eye tracking were relatively crude, later, more sophisticated and sensitive techniques required invasive protocols and the use of restraint. In the past decade, technology has advanced to a point where noninvasive eye-tracking techniques, developed for use with human participants, can be applied for use with nonhuman primates in a restraint-free manner. Here we review the corpus of recent studies (N=32) that take such an approach. Despite the growing interest in eye-tracking research, there is still little consensus on "best practices," both in terms of deploying test protocols or reporting methods and results. Therefore, we look to advances made in the field of developmental psychology, as well as our own collective experiences using eye trackers with nonhuman primates, to highlight key elements that researchers should consider when designing noninvasive restraint-free eye-tracking research protocols for use with nonhuman primates. Beyond promoting best practices for research protocols, we also outline an ideal approach for reporting such research and highlight future directions for the field.

Temporal emergence of age-associated changes in cognitive and physical function in vervets (Chlorocebus aethiops sabaeus)

Dual declines in gait speed and cognitive performance are associated with increased risk of developing dementia. Characterizing the patterns of such impairments therefore is paramount to distinguishing healthy from pathological aging. Nonhuman primates such as vervet/African green monkeys (Chlorocebus aethiops sabaeus) are important models of human neurocognitive aging, yet the trajectory of dual decline has not been characterized. We therefore (1) assessed whether cognitive and physical performance (i.e., gait speed) are lower in older aged animals; (2) explored the relationship between performance in a novel task of executive function (Wake Forest Maze Task-WFMT) and a well-established assessment of working memory (delayed response task-DR task); and (3) examined the association between baseline gait speed with executive function and working memory at 1-year follow-up. We found (1) physical and cognitive declines with age; (2) strong agreement between performance in the novel WFMT and DR task; and (3) that slow gait is associated with poor cognitive performance in both domains. Our results suggest that older aged vervets exhibit a coordinated suite of traits consistent with human aging and that slow gait may be a biomarker of cognitive decline. This integrative approach provides evidence that gait speed and cognitive function differ across the lifespan in female vervet monkeys, which advances them as a model that could be used to dissect relationships between trajectories of dual decline over time.

The influence of cooperation and competition on preschoolers' prosociality toward in-group and out-group members

Past research suggests that children favour their in-group members over out-group members as indicated by selective prosociality such as sharing or social inclusion. This preregistered study examined how playing a cooperative, competitive or solitary game influences German 4- to 6-year-olds' in-group bias and their general willingness to act prosocially, independent of the recipient's group membership (N = 144). After playing the game, experimenters introduced minimal groups and assessed children's sharing with an in-group and an out-group member as well as their social inclusion of an out-group member into an in-group interaction. Furthermore, we assessed children's physical engagement and parents' social dominance orientation (SDO)-a scale indicating the preference for inequality among social groups-to learn more about inter-individual differences in children's prosocial behaviours. Results suggest that children showed a stronger physical engagement while playing competitively as compared with cooperatively or alone. The different gaming contexts did not impact children's subsequent in-group bias or general willingness to act prosocially. Parental SDO was not linked to children's prosocial behaviours. These results indicate that competition can immediately affect children's behaviour while playing but raise doubt on the importance of cooperative and competitive play for children's subsequent intergroup and prosocial behaviour.

Replications, Comparisons, Sampling and the Problem of Representativeness in Animal Cognition Research

Animal cognition research often involves small and idiosyncratic samples. This can constrain the generalizability and replicability of a study's results and prevent meaningful comparisons between samples. However, there is little consensus about what makes a strong replication or comparison in animal research. We apply a resampling definition of replication to answer these questions in Part 1 of this article, and, in Part 2, we focus on the problem of representativeness in animal research. Through a case study and a simulation study, we highlight how and when representativeness may be an issue in animal behavior and cognition research and show how the representativeness problems can be viewed through the lenses of, i) replicability, ii) generalizability and external validity, iii) pseudoreplication and, iv) theory testing. Next, we discuss when and how researchers can improve their ability to learn from small sample research through, i) increasing heterogeneity in experimental design, ii) increasing homogeneity in experimental design, and, iii) statistically modeling variation. Finally, we describe how the strongest solutions will vary depending on the goals and resources of individual research programs and discuss some barriers towards implementing them.

Using natural travel paths to infer and compare primate cognition in the wild

Within comparative psychology, the evolution of animal cognition is typically studied either by comparing indirect measures of cognitive abilities (e.g., relative brain size) across many species or by conducting batteries of decision-making experiments among (typically) a few captive species. Here, we propose a third, complementary approach: inferring and comparing cognitive abilities through observational field records of natural information gradients and the associated variation in decision-making outcomes, using the ranging behavior of wild animals. To demonstrate the feasibility of our proposal, we present the results of a global survey assessing the availability of long-term ranging data sets from wild primates and the willingness of primatologists to share such data. We explore three ways in which such ranging data, with or without the associated behavioral and ecological data often collected by primatologists, might be used to infer and compare spatial cognition. Finally, we suggest how ecological complexity may be best incorporated into comparative analyses.

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Comparing animal ranging decisions in natural habitats has untapped potential

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How decisions vary with natural information gradients reveals wild animal cognition

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Ranging data on at least 164 populations of 105 wild primate species are available

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We present three thought analyses to compare cognition and explain its evolution

Beyond MRI: on the scientific value of combining non-human primate neuroimaging with metadata

Sharing and pooling large amounts of non-human primate neuroimaging data offer new exciting opportunities to understand the primate brain. The potential of big data in non-human primate neuroimaging could however be tremendously enhanced by combining such neuroimaging data with other types of information. Here we describe metadata that have been identified as particularly valuable by the non-human primate neuroimaging community, including behavioural, genetic, physiological and phylogenetic data.

Macaque species with varying social tolerance show no differences in understanding what other agents perceive

A growing body of work demonstrates that a species' socioecology can impact its cognitive abilities. Indeed, even closely related species with different socioecological pressures often show different patterns of cognitive performance on the same task. Here, we explore whether major differences in social tolerance in two closely related macaque species can impact a core sociocognitive ability, the capacity to recognize what others see. Specifically, we compared the performance of Barbary macaques (Macaca sylvanus, n = 80) and rhesus macaques (Macaca mulatta, n = 62) on a standard test of visual perspective understanding. In contrast to the difference in performance, one might expect from these species' divergent socioecologies that our results show similar performance across Barbary and rhesus macaques, with both species forming expectations about how another agent will act based on that agent's visual perspective. These results suggest that differences in socioecology may not play as big of a role in the evolution of some theory of mind capacities as they do in other decision-making or foraging contexts.

Chimpanzees' (Pan troglodytes) problem-solving skills are influenced by housing facility and captive care duration

Although a large body of primate cognition research is done in captive institutions, little is known about how much individuals from different facilities vary in their experiences and cognitive skills. Here we present the results of an experimental study investigating how physical cognitive skills vary between chimpanzees in relation to captive settings and their time in captivity. We tested 59 chimpanzees housed at two different captive facilities (a rehabilitation center (sanctuary) and a zoo) in three problem-solving tasks. Our results showed that chimpanzees at the two housing facilities significantly differed in overall task performance. On average, the sanctuary chimpanzees outperformed the chimpanzees housed at the zoo in the detour reaching task and the honey trap task. However, the zoo chimpanzees performed slightly better on average in the learning task. We propose that, for this particular sample, the documented differences result from a combination of factors, such as prior experience with cognitive testing, motivation levels and varying degrees of human exposure. Within the sanctuary sample, we found that chimpanzees who arrived at an earlier age at the sanctuary and had therefore spent a larger percentage of their lives in a captive environment, were better problem-solvers than those that arrived at a later age to the sanctuary. Thus, rehabilitation and time in captivity contributed to improved physical cognitive skills in sanctuary chimpanzees. Our results highlight the importance of studying intraspecific variation and the effect that previous experience and living conditions might have on physical cognitive skills in non-human apes. Accordingly, we should be cautious when extrapolating findings of cognitive studies from one population to the species as a whole.

Building a collaborative Psychological Science: Lessons learned from ManyBabies 1

The field of infancy research faces a difficult challenge: some questions require samples that are simply too large for any one lab to recruit and test. ManyBabies aims to address this problem by forming large-scale collaborations on key theoretical questions in developmental science, while promoting the uptake of Open Science practices. Here, we look back on the first project completed under the ManyBabies umbrella - ManyBabies 1 - which tested the development of infant-directed speech preference. Our goal is to share the lessons learned over the course of the project and to articulate our vision for the role of large-scale collaborations in the field. First, we consider the decisions made in scaling up experimental research for a collaboration involving 100+ researchers and 70+ labs. Next, we discuss successes and challenges over the course of the project, including: protocol design and implementation, data analysis, organizational structures and collaborative workflows, securing funding, and encouraging broad participation in the project. Finally, we discuss the benefits we see both in ongoing ManyBabies projects and in future large-scale collaborations in general, with a particular eye towards developing best practices and increasing growth and diversity in infancy research and psychological science in general. Throughout the paper, we include first-hand narrative experiences, in order to illustrate the perspectives of researchers playing different roles within the project. While this project focused on the unique challenges of infant research, many of the insights we gained can be applied to large-scale collaborations across the broader field of psychology.