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Ahsan SM, Injamum-Ul-Hoque M, Das AK, Rahman MM, Mollah MMI, Paul NC, Choi HW. Plant-Entomopathogenic Fungi Interaction: Recent Progress and Future Prospects on Endophytism-Mediated Growth Promotion and Biocontrol. PLANTS (BASEL, SWITZERLAND) 2024; 13:1420. [PMID: 38794490 PMCID: PMC11124879 DOI: 10.3390/plants13101420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/17/2024] [Accepted: 05/18/2024] [Indexed: 05/26/2024]
Abstract
Entomopathogenic fungi, often acknowledged primarily for their insecticidal properties, fulfill diverse roles within ecosystems. These roles encompass endophytism, antagonism against plant diseases, promotion of the growth of plants, and inhabitation of the rhizosphere, occurring both naturally and upon artificial inoculation, as substantiated by a growing body of contemporary research. Numerous studies have highlighted the beneficial aspects of endophytic colonization. This review aims to systematically organize information concerning the direct (nutrient acquisition and production of phytohormones) and indirect (resistance induction, antibiotic and secondary metabolite production, siderophore production, and mitigation of abiotic and biotic stresses) implications of endophytic colonization. Furthermore, a thorough discussion of these mechanisms is provided. Several challenges, including isolation complexities, classification of novel strains, and the impact of terrestrial location, vegetation type, and anthropogenic reluctance to use fungal entomopathogens, have been recognized as hurdles. However, recent advancements in biotechnology within microbial research hold promising solutions to many of these challenges. Ultimately, the current constraints delineate potential future avenues for leveraging endophytic fungal entomopathogens as dual microbial control agents.
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Affiliation(s)
- S. M. Ahsan
- Department of Plant Medicals, Andong National University, Andong 36729, Republic of Korea;
| | - Md. Injamum-Ul-Hoque
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea; (M.I.-U.-H.); (A.K.D.)
| | - Ashim Kumar Das
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea; (M.I.-U.-H.); (A.K.D.)
| | - Md. Mezanur Rahman
- Department of Plant and Soil Science, Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX 79409, USA;
| | - Md. Mahi Imam Mollah
- Department of Entomology, Patuakhali Science and Technology University, Dumki, Patuakhali 8602, Bangladesh;
| | - Narayan Chandra Paul
- Kumho Life Science Laboratory, Chonnam National University, Gwangju 61186, Republic of Korea;
| | - Hyong Woo Choi
- Department of Plant Medicals, Andong National University, Andong 36729, Republic of Korea;
- Institute of Cannabis Biotechnology, Andong National University, Andong 36729, Republic of Korea
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2
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Martin FM, van der Heijden MGA. The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application. THE NEW PHYTOLOGIST 2024; 242:1486-1506. [PMID: 38297461 DOI: 10.1111/nph.19541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 12/07/2023] [Indexed: 02/02/2024]
Abstract
Mycorrhizal symbioses between plants and fungi are vital for the soil structure, nutrient cycling, plant diversity, and ecosystem sustainability. More than 250 000 plant species are associated with mycorrhizal fungi. Recent advances in genomics and related approaches have revolutionized our understanding of the biology and ecology of mycorrhizal associations. The genomes of 250+ mycorrhizal fungi have been released and hundreds of genes that play pivotal roles in regulating symbiosis development and metabolism have been characterized. rDNA metabarcoding and metatranscriptomics provide novel insights into the ecological cues driving mycorrhizal communities and functions expressed by these associations, linking genes to ecological traits such as nutrient acquisition and soil organic matter decomposition. Here, we review genomic studies that have revealed genes involved in nutrient uptake and symbiosis development, and discuss adaptations that are fundamental to the evolution of mycorrhizal lifestyles. We also evaluated the ecosystem services provided by mycorrhizal networks and discuss how mycorrhizal symbioses hold promise for sustainable agriculture and forestry by enhancing nutrient acquisition and stress tolerance. Overall, unraveling the intricate dynamics of mycorrhizal symbioses is paramount for promoting ecological sustainability and addressing current pressing environmental concerns. This review ends with major frontiers for further research.
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Affiliation(s)
- Francis M Martin
- Université de Lorraine, INRAE, UMR IAM, Champenoux, 54280, France
- Institute of Applied Mycology, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, 430070, China
| | - Marcel G A van der Heijden
- Department of Agroecology & Environment, Plant-Soil Interactions, Agroscope, Zürich, 8046, Switzerland
- Department of Plant and Microbial Biology, University of Zürich, Zürich, 8057, Switzerland
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3
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Yuan M, Na M, Hicks LC, Rousk J. Limiting resources for soil microbial growth in climate change simulation treatments in the subarctic. Ecology 2024; 105:e4210. [PMID: 37989722 DOI: 10.1002/ecy.4210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Revised: 09/06/2023] [Accepted: 10/04/2023] [Indexed: 11/23/2023]
Abstract
The microbial use of resources to sustain life and reproduce influences for example, decomposition and plant nutrient provisioning. The study of "limiting factors" has shed light on the interaction between plants and their environment. Here, we investigated whether carbon (C), nitrogen (N), or phosphorus (P) was limiting for soil microorganisms in a subarctic tundra heath, and how changes in resource availability associated with climate change affected this. We studied samples in which changes in resource availability due to climate warming were simulated by the addition of birch litter and/or inorganic N. To these soils, we supplied factorial C (as glucose), N (as NH4 NO3 ), and P (as KH2 PO4 /K2 HPO4 ) additions ("limiting factor assays," LFA), to determine the limiting factors. The combination of C and P induced large growth responses in all soils and, combined with a systematic tendency for growth increases by C, this suggested that total microbial growth was primarily limited by C and secondarily by P. The C limitation was alleviated by the field litter treatment and strengthened by N fertilization. The microbial growth response to the LFA-C and LFA-P addition was strongest in the field-treatment that combined litter and N addition. We also found that bacteria were closer to P limitation than fungi. Our results suggest that, under a climate change scenario, increased C availability resulting from Arctic greening, treeline advance, and shrubification will reduce the microbial C limitation, while increased N availability resulting from warming will intensify the microbial C limitation. Our results also suggest that the synchronous increase of both C and N availability might lead to a progressive P limitation of microbial growth, primarily driven by bacteria being closer to P limitation. These shifts in microbial resource limitation might lead to a microbial targeting of the limiting element from organic matter, and also trigger competition for nutrients between plants and microorganisms, thus modulating the productivity of the ecosystem.
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Affiliation(s)
- Mingyue Yuan
- Section of Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Meng Na
- Section of Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
- School of Forestry, Northeast Forestry University, Harbin, China
| | - Lettice C Hicks
- Section of Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
| | - Johannes Rousk
- Section of Microbial Ecology, Department of Biology, Lund University, Lund, Sweden
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4
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Liu B, Fan X, Meng D, Liu Z, Gao D, Chang Q, Bai E. Ectomycorrhizal trees rely on nitrogen resorption less than arbuscular mycorrhizal trees globally. Ecol Lett 2024; 27:e14346. [PMID: 38009408 DOI: 10.1111/ele.14346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 10/31/2023] [Accepted: 11/04/2023] [Indexed: 11/28/2023]
Abstract
Nitrogen (N) resorption is an important pathway of N conservation, contributing to an important proportion of plant N requirement. However, whether the ratio of N resorption to N requirement may be affected by environmental factors, mycorrhizal types or atmospheric CO2 concentration remains unclear. Here, we conducted a meta-analysis on the impacts of environmental factors and mycorrhizal types on this ratio. We found this ratio in ectomycorrhizal (EM) trees decreased with mean annual precipitation, mean annual temperature, soil total N content and atmospheric CO2 concentration and was significantly lower than that in arbuscular mycorrhizal (AM) trees. An in situ 15 N tracing experiment further confirmed that AM trees have a stronger reliance on N resorption than EM trees. Our study suggests that AM and EM trees potentially have different strategies for alleviation of progressive N limitation, highlighting the necessity of incorporating plant mycorrhizal types into Earth System Models.
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Affiliation(s)
- Bai Liu
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
| | - Xianlei Fan
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
| | - Di Meng
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
| | - Ziping Liu
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Decai Gao
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Qing Chang
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
| | - Edith Bai
- Key Laboratory of Geographical Processes and Ecological Security of Changbai Mountains, Ministry of Education; School of Geographical Sciences, Northeast Normal University, Changchun, China
- Key Laboratory of Vegetation Ecology, Ministry of Education, Northeast Normal University, Changchun, China
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5
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Olchowik J, Jankowski P, Suchocka M, Malewski T, Wiesiołek A, Hilszczańska D. The impact of anthropogenic transformation of urban soils on ectomycorrhizal fungal communities associated with silver birch (Betula pendula Roth.) growth in natural versus urban soils. Sci Rep 2023; 13:21268. [PMID: 38042912 PMCID: PMC10693619 DOI: 10.1038/s41598-023-48592-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 11/28/2023] [Indexed: 12/04/2023] Open
Abstract
Betula pendula Roth. is considered a pioneering plant species important for urban ecosystems. Based on the sequencing of fungal ITS, we characterized the ectomycorrhizal (ECM) communities of twenty silver birch trees growing in a contaminated, highly anthropo-pressured urban environment and in a natural reserve site. We analysed chemical properties of each tree soil samples, focusing on effects of anthropogenic transformation. Three effects of urbanization: high heavy metal content, increased salinity and soil alkalinity, were highly correlated. The examined trees were divided into two forest and two urban clusters according to the level of anthropogenic soil change. The effect of soil transformation on the ECM communities was studied, with the assumption that stronger urban transformation leads to lower ECM vitality and diversity. The results of the study did not confirm the above hypothesis. The ECM colonization was above 80% in all clusters, but the forest clusters had significantly higher share of vital non-ECM root tips than the urban ones. Eleven mycorrhizal fungal species were identified varying from seven to nine and with seven species observed in the most contaminated urban plot. However, the lowest Shannon species diversity index was found in the most natural forest cluster. In conclusion, our findings demonstrate no significant negative effect of the urban stresses on the ECM communities of silver birch suggesting that both forest and urban trees have the potential to generate a similar set of ECM taxa.
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Affiliation(s)
- Jacek Olchowik
- Department of Plant Protection, Institute of Horticultural Sciences, Warsaw University of Life Sciences-SGGW, Warsaw, Poland
| | - Paweł Jankowski
- Department of Computer Information Systems, Institute of Information Technology, Warsaw University of Life Sciences-SGGW, Warsaw, Poland.
| | - Marzena Suchocka
- Department of Landscape Architecture, Institute of Environmental Engineering, Warsaw University of Life Sciences-SGGW, Warsaw, Poland
| | - Tadeusz Malewski
- Department of Molecular and Biometric Techniques, Museum and Institute of Zoology, Polish Academy of Science, Warsaw, Poland
| | - Adam Wiesiołek
- Department of Plant Protection, Institute of Horticultural Sciences, Warsaw University of Life Sciences-SGGW, Warsaw, Poland
| | - Dorota Hilszczańska
- Department of Forest Ecology, Forest Research Institute, Sękocin Stary, Poland
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6
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Becklin KM, Viele BM, Coleman HD. Nutrient conditions mediate mycorrhizal effects on biomass production and cell wall chemistry in poplar. TREE PHYSIOLOGY 2023; 43:1571-1583. [PMID: 37166359 DOI: 10.1093/treephys/tpad064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 04/13/2023] [Accepted: 05/08/2023] [Indexed: 05/12/2023]
Abstract
Large-scale biofuel production from lignocellulosic feedstock is limited by the financial and environmental costs associated with growing and processing lignocellulosic material and the resilience of these plants to environmental stress. Symbiotic associations with arbuscular (AM) and ectomycorrhizal (EM) fungi represent a potential strategy for expanding feedstock production while reducing nutrient inputs. Comparing AM and EM effects on wood production and chemical composition is a necessary step in developing biofuel feedstocks. Here, we assessed the productivity, biomass allocation and secondary cell wall (SCW) composition of greenhouse-grown Populus tremuloidesMichx. inoculated with either AM or EM fungi. Given the long-term goal of reducing nutrient inputs for biofuel production, we further tested the effects of nutrient availability and nitrogen:phosphorus stoichiometry on mycorrhizal responses. Associations with both AM and EM fungi increased plant biomass by 14-74% depending on the nutrient conditions but had minimal effects on SCW composition. Mycorrhizal plants, especially those inoculated with EM fungi, also allocated a greater portion of their biomass to roots, which could be beneficial in the field where plants are likely to experience both water and nutrient stress. Leaf nutrient content was weakly but positively correlated with wood production in mycorrhizal plants. Surprisingly, phosphorus played a larger role in EM plants compared with AM plants. Relative nitrogen and phosphorus availability were correlated with shifts in SCW composition. For AM associations, the benefit of increased wood biomass may be partially offset by increased lignin content, a trait that affects downstream processing of lignocellulosic tissue for biofuels. By comparing AM and EM effects on the productivity and chemical composition of lignocellulosic tissue, this work links broad functional diversity in mycorrhizal associations to key biofuel traits and highlights the importance of considering both biotic and abiotic factors when developing strategies for sustainable biofuel production.
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Affiliation(s)
- Katie M Becklin
- Department of Biology, Syracuse University, 107 College Place, Syracuse, NY, USA
| | - Bethanie M Viele
- Department of Biology, Syracuse University, 107 College Place, Syracuse, NY, USA
| | - Heather D Coleman
- Department of Biology, Syracuse University, 107 College Place, Syracuse, NY, USA
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7
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Hawkins HJ, Cargill RIM, Van Nuland ME, Hagen SC, Field KJ, Sheldrake M, Soudzilovskaia NA, Kiers ET. Mycorrhizal mycelium as a global carbon pool. Curr Biol 2023; 33:R560-R573. [PMID: 37279689 DOI: 10.1016/j.cub.2023.02.027] [Citation(s) in RCA: 35] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
For more than 400 million years, mycorrhizal fungi and plants have formed partnerships that are crucial to the emergence and functioning of global ecosystems. The importance of these symbiotic fungi for plant nutrition is well established. However, the role of mycorrhizal fungi in transporting carbon into soil systems on a global scale remains under-explored. This is surprising given that ∼75% of terrestrial carbon is stored belowground and mycorrhizal fungi are stationed at a key entry point of carbon into soil food webs. Here, we analyze nearly 200 datasets to provide the first global quantitative estimates of carbon allocation from plants to the mycelium of mycorrhizal fungi. We estimate that global plant communities allocate 3.93 Gt CO2e per year to arbuscular mycorrhizal fungi, 9.07 Gt CO2e per year to ectomycorrhizal fungi, and 0.12 Gt CO2e per year to ericoid mycorrhizal fungi. Based on this estimate, 13.12 Gt of CO2e fixed by terrestrial plants is, at least temporarily, allocated to the underground mycelium of mycorrhizal fungi per year, equating to ∼36% of current annual CO2 emissions from fossil fuels. We explore the mechanisms by which mycorrhizal fungi affect soil carbon pools and identify approaches to increase our understanding of global carbon fluxes via plant-fungal pathways. Our estimates, although based on the best available evidence, are imperfect and should be interpreted with caution. Nonetheless, our estimations are conservative, and we argue that this work confirms the significant contribution made by mycorrhizal associations to global carbon dynamics. Our findings should motivate their inclusion both within global climate and carbon cycling models, and within conservation policy and practice.
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Affiliation(s)
- Heidi-Jayne Hawkins
- Department of Biological Sciences, University of Cape Town, Cape Town 7701, South Africa; Conservation International, Forrest House, Belmont Park, Cape Town 7700, South Africa.
| | - Rachael I M Cargill
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; AMOLF, Science Park 102, Amsterdam, The Netherlands
| | - Michael E Van Nuland
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; Society for the Protection of Underground Networks, SPUN, 3500 South DuPont Highway, Dover, DE 19901, USA
| | | | - Katie J Field
- Plants, Photosynthesis and Soil, School of Biosciences, The University of Sheffield, Western Bank, Sheffield S10 2TN, UK
| | - Merlin Sheldrake
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; Society for the Protection of Underground Networks, SPUN, 3500 South DuPont Highway, Dover, DE 19901, USA
| | | | - E Toby Kiers
- Amsterdam Institute for Life and Environment, Vrije Universiteit, De Boelelaan 1085, NL-1081 HV Amsterdam, The Netherlands; Society for the Protection of Underground Networks, SPUN, 3500 South DuPont Highway, Dover, DE 19901, USA
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8
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Castaño C, Hallin S, Egelkraut D, Lindahl BD, Olofsson J, Clemmensen KE. Contrasting plant-soil-microbial feedbacks stabilize vegetation types and uncouple topsoil C and N stocks across a subarctic-alpine landscape. THE NEW PHYTOLOGIST 2023; 238:2621-2633. [PMID: 36519258 DOI: 10.1111/nph.18679] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 12/02/2022] [Indexed: 05/19/2023]
Abstract
Global vegetation regimes vary in belowground carbon (C) and nitrogen (N) dynamics. However, disentangling large-scale climatic controls from the effects of intrinsic plant-soil-microbial feedbacks on belowground processes is challenging. In local gradients with similar pedo-climatic conditions, effects of plant-microbial feedbacks may be isolated from large-scale drivers. Across a subarctic-alpine mosaic of historic grazing fields and surrounding heath and birch forest, we evaluated whether vegetation-specific plant-microbial feedbacks involved contrasting N cycling characteristics and C and N stocks in the organic topsoil. We sequenced soil fungi, quantified functional genes within the inorganic N cycle, and measured 15 N natural abundance. In grassland soils, large N stocks and low C : N ratios associated with fungal saprotrophs, archaeal ammonia oxidizers, and bacteria capable of respiratory ammonification, indicating maintained inorganic N cycling a century after abandoned reindeer grazing. Toward forest and heath, increasing abundance of mycorrhizal fungi co-occurred with transition to organic N cycling. However, ectomycorrhizal fungal decomposers correlated with small soil N and C stocks in forest, while root-associated ascomycetes associated with small N but large C stocks in heath, uncoupling C and N storage across vegetation types. We propose that contrasting, positive plant-microbial feedbacks stabilize vegetation trajectories, resulting in diverging soil C : N ratios at the landscape scale.
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Affiliation(s)
- Carles Castaño
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75007, Uppsala, Sweden
| | - Sara Hallin
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75007, Uppsala, Sweden
| | - Dagmar Egelkraut
- Department of Biological Sciences, University of Bergen, 5006, Bergen, Norway
| | - Björn D Lindahl
- Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala, SE-75007, Sweden
| | - Johan Olofsson
- Department of Ecology and Environmental Science, Umeå University, 90187, Umeå, Sweden
| | - Karina Engelbrecht Clemmensen
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75007, Uppsala, Sweden
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9
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Lamarque LJ, Félix-Faure J, Deschamps L, Lévesque E, Cusson PO, Fortier D, Giacomazzo M, Guillemette F, Paillassa J, Tremblay M, Maire V. Hydrological Regime and Plant Functional Traits Jointly Mediate the Influence of Salix spp. on Soil Organic Carbon Stocks in a High Arctic Tundra. Ecosystems 2023. [DOI: 10.1007/s10021-023-00829-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2023]
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10
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Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. THE ISME JOURNAL 2023; 17:354-370. [PMID: 36536072 PMCID: PMC9938248 DOI: 10.1038/s41396-022-01345-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 11/14/2022] [Accepted: 11/17/2022] [Indexed: 12/24/2022]
Abstract
The substrates of the Brazilian campos rupestres, a grassland ecosystem, have extremely low concentrations of phosphorus and nitrogen, imposing restrictions to plant growth. Despite that, this ecosystem harbors almost 15% of the Brazilian plant diversity, raising the question of how plants acquire nutrients in such a harsh environment. Here, we set out to uncover the taxonomic profile, the compositional and functional differences and similarities, and the nutrient turnover potential of microbial communities associated with two plant species of the campos rupestres-dominant family Velloziaceae that grow over distinct substrates (soil and rock). Using amplicon sequencing data, we show that, despite the pronounced composition differentiation, the plant-associated soil and rock communities share a core of highly efficient colonizers that tend to be highly abundant and is enriched in 21 bacterial families. Functional investigation of metagenomes and 522 metagenome-assembled genomes revealed that the microorganisms found associated to plant roots are enriched in genes involved in organic compound intake, and phosphorus and nitrogen turnover. We show that potential for phosphorus transport, mineralization, and solubilization are mostly found within bacterial families of the shared microbiome, such as Xanthobacteraceae and Bryobacteraceae. We also detected the full repertoire of nitrogen cycle-related genes and discovered a lineage of Isosphaeraceae that acquired nitrogen-fixing potential via horizontal gene transfer and might be also involved in nitrification via a metabolic handoff association with Binataceae. We highlight that plant-associated microbial populations in the campos rupestres harbor a genetic repertoire with potential to increase nutrient availability and that the microbiomes of biodiversity hotspots can reveal novel mechanisms of nutrient turnover.
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11
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Schäfer ED, Owen MR, Band LR, Farcot E, Bennett MJ, Lynch JP. Modeling root loss reveals impacts on nutrient uptake and crop development. PLANT PHYSIOLOGY 2022; 190:2260-2278. [PMID: 36047839 PMCID: PMC9706447 DOI: 10.1093/plphys/kiac405] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 07/26/2022] [Indexed: 05/25/2023]
Abstract
Despite the widespread prevalence of root loss in plants, its effects on crop productivity are not fully understood. While root loss reduces the capacity of plants to take up water and nutrients from the soil, it may provide benefits by decreasing the resources required to maintain the root system. Here, we simulated a range of root phenotypes in different soils and root loss scenarios for barley (Hordeum vulgare), common bean (Phaseolus vulgaris), and maize (Zea mays) using and extending the open-source, functional-structural root/soil simulation model OpenSimRoot. The model enabled us to quantify the impact of root loss on shoot dry weight in these scenarios and identify in which scenarios root loss is beneficial, detrimental, or has no effect. The simulations showed that root loss is detrimental for phosphorus uptake in all tested scenarios, whereas nitrogen uptake was relatively insensitive to root loss unless main root axes were lost. Loss of axial roots reduced shoot dry weight for all phenotypes in all species and soils, whereas lateral root loss had a smaller impact. In barley and maize plants with high lateral branching density that were not phosphorus-stressed, loss of lateral roots increased shoot dry weight. The fact that shoot dry weight increased due to root loss in these scenarios indicates that plants overproduce roots for some environments, such as those found in high-input agriculture. We conclude that a better understanding of the effects of root loss on plant development is an essential part of optimizing root system phenotypes for maximizing yield.
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Affiliation(s)
- Ernst D Schäfer
- School of Mathematical Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Markus R Owen
- School of Mathematical Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Leah R Band
- School of Mathematical Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
- School of Biosciences, University of Nottingham, Nr Loughborough, LE12 5RD, UK
| | - Etienne Farcot
- School of Mathematical Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, UK
| | - Malcolm J Bennett
- School of Biosciences, University of Nottingham, Nr Loughborough, LE12 5RD, UK
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12
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Lang JA, Roth JD, Tardif JC, Markham JH. Red foxes enhance long‐term tree growth near the Arctic treeline. Ecosphere 2022. [DOI: 10.1002/ecs2.4236] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Affiliation(s)
- Jessica A. Lang
- Department of Biological Sciences University of Manitoba Winnipeg Manitoba Canada
| | - James D. Roth
- Department of Biological Sciences University of Manitoba Winnipeg Manitoba Canada
| | - Jacques C. Tardif
- Department of Biology University of Winnipeg Winnipeg Manitoba Canada
| | - John H. Markham
- Department of Biological Sciences University of Manitoba Winnipeg Manitoba Canada
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13
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Baeza-Guzmán Y, Medel-Ortiz R, Trejo Aguilar D, Garibay-Orijel R. Medium-distance soil foragers dominate the Pinus hartwegii ectomycorrhizal community at the 3900 m Neotropical treeline. Symbiosis 2022. [DOI: 10.1007/s13199-022-00869-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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14
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Weemstra M, Kuyper TW, Sterck FJ, Umaña MN. Incorporating belowground traits: avenues towards a whole‐tree perspective on performance. OIKOS 2022. [DOI: 10.1111/oik.08827] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Monique Weemstra
- Dept of Ecology and Evolutionary Biology, Univ. of Michigan Ann Arbor MI USA
| | - Thomas W. Kuyper
- Soil Biology Group, Wageningen Univ. and Research Centre Wageningen the Netherlands
| | - Frank J. Sterck
- Forest Ecology and Forest Management Group, Wageningen Univ. and Research Centre Wageningen the Netherlands
| | - María Natalia Umaña
- Dept of Ecology and Evolutionary Biology, Univ. of Michigan Ann Arbor MI USA
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15
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Manlick PJ, Newsome SD. Stable isotope fingerprinting traces essential amino acid assimilation and multichannel feeding in a vertebrate consumer. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13903] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Philip J. Manlick
- Department of Biology University of New Mexico Albuquerque New Mexico USA
| | - Seth D. Newsome
- Department of Biology University of New Mexico Albuquerque New Mexico USA
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16
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Wan J, Crowther TW. Uniting the scales of microbial biogeochemistry with trait‐based modeling. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Joe Wan
- Institute of Integrative Biology ETH Zürich Zürich Switzerland
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17
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Rivera Pérez CA, Janz D, Schneider D, Daniel R, Polle A. Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil. mSystems 2022; 7:e0095721. [PMID: 35089084 PMCID: PMC8725588 DOI: 10.1128/msystems.00957-21] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Accepted: 11/29/2021] [Indexed: 01/05/2023] Open
Abstract
Mineral nitrogen (N) is a major nutrient showing strong fluctuations in the environment due to anthropogenic activities. The acquisition and translocation of N to forest trees are achieved mainly by highly diverse ectomycorrhizal fungi (EMF) living in symbioses with their host roots. Here, we examined colonized root tips to characterize the entire root-associated fungal community by DNA metabarcoding-Illumina sequencing of the fungal internal transcribed spacer 2 (ITS2) molecular marker and used RNA sequencing to target metabolically active fungi and the plant transcriptome after N application. The study was conducted with beech (Fagus sylvatica L.), a dominant tree species in central Europe, grown in native forest soil. We demonstrate strong enrichment of 15N from nitrate or ammonium in the ectomycorrhizal roots by stable-isotope labeling. The relative abundance of the EMF members in the fungal community was correlated with their transcriptional abundances. The fungal metatranscriptome covered Kyoto Encyclopedia of Genes and Genomes (KEGG) and Eukaryotic Orthologous Groups (KOG) categories similar to those of model fungi and did not reveal significant changes related to N metabolization but revealed species-specific transcription patterns, supporting trait stability. In contrast to the resistance of the fungal metatranscriptome, the transcriptome of the host exhibited dedicated nitrate- or ammonium-responsive changes with the upregulation of transporters and enzymes required for nitrate reduction and a drastic enhancement of glutamine synthetase transcript levels, indicating the channeling of ammonium into the pathway for plant protein biosynthesis. Our results support that naturally assembled fungal communities living in association with the tree roots buffer nutritional signals in their own metabolism but do not shield plants from high environmental N levels. IMPORTANCE Although EMF are well known for their role in supporting tree N nutrition, the molecular mechanisms underlying N flux from the soil solution into the host through the ectomycorrhizal pathway remain widely unknown. Furthermore, ammonium and nitrate availability in the soil solution is subject to frequent oscillations that create a dynamic environment for the tree roots and associated microbes during N acquisition. Therefore, it is important to understand how root-associated mycobiomes and the tree roots handle these fluctuations. We studied the responses of the symbiotic partners by screening their transcriptomes after a sudden environmental flux of nitrate or ammonium. We show that the fungi and the host respond asynchronously, with the fungi displaying resistance to increased nitrate or ammonium and the host dynamically metabolizing the supplied N sources. This study provides insights into the molecular mechanisms of the symbiotic partners operating under N enrichment in a multidimensional symbiotic system.
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Affiliation(s)
- Carmen Alicia Rivera Pérez
- Forest Botany and Tree Physiology, Büsgen Institute, Georg-August University of Göttingen, Göttingen, Germany
| | - Dennis Janz
- Forest Botany and Tree Physiology, Büsgen Institute, Georg-August University of Göttingen, Göttingen, Germany
| | - Dominik Schneider
- Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
- Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
| | - Rolf Daniel
- Department of Genomic and Applied Microbiology, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
- Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Georg-August University of Göttingen, Göttingen, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, Büsgen Institute, Georg-August University of Göttingen, Göttingen, Germany
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18
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Khan NF, Reshi ZA. Diversity of root-associated mycobiome of Betula utilis D. Don: a treeline species in Kashmir Himalaya. Trop Ecol 2022. [DOI: 10.1007/s42965-022-00230-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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19
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The effects of ectomycorrhizal inoculation on survival and growth of Pinus thunbergii seedlings planted in saline soil. Symbiosis 2022. [DOI: 10.1007/s13199-021-00825-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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20
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Martin AC, Macias-Fauria M, Bonsall MB, Forbes BC, Zetterberg P, Jeffers ES. Common mechanisms explain nitrogen-dependent growth of Arctic shrubs over three decades despite heterogeneous trends and declines in soil nitrogen availability. THE NEW PHYTOLOGIST 2022; 233:670-686. [PMID: 34087005 DOI: 10.1111/nph.17529] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 05/20/2021] [Indexed: 06/12/2023]
Abstract
Heterogeneity has been observed in the responses of Arctic shrubs to climate variability over recent decades, which may reflect landscape-scale variability in belowground resources. At a northern fringe of tall shrub expansion (Yuribei, Yamal Peninsula, Russia), we sought to determine the mechanisms relating nitrogen (N) limitation to shrub growth over decadal time. We analysed the ratio of 15 N to 14 N isotopes in wood rings of 10 Salix lanata individuals (399 measurements) to reconstruct annual point-based bioavailable N between 1980 and 2013. We applied a model-fitting/model-selection approach with a suite of competing ecological models to assess the most-likely mechanisms that explain each shrub's individual time-series. Shrub δ15 N time-series indicated declining (seven shrubs), increasing (two shrubs) and no trend (one shrub) in N availability. The most appropriate model for all shrubs included N-dependent growth of linear rather than saturating form. Inclusion of plant-soil feedbacks better explained ring width and δ15 N for eight of 10 individuals. Although N trajectories were individualistic, common mechanisms of varying strength confirmed the N-dependency of shrub growth. The linear mechanism may reflect intense scavenging of scarce N; the importance of plant-soil feedbacks suggests that shrubs subvert the microbial bottleneck by actively controlling their environment.
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Affiliation(s)
- Andrew C Martin
- Oxford Long-Term Ecology Laboratory, Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK
- Biogeosciences Lab, School of Geography and the Environment, University of Oxford, Oxford, OX1 3QY, UK
| | - Marc Macias-Fauria
- Biogeosciences Lab, School of Geography and the Environment, University of Oxford, Oxford, OX1 3QY, UK
| | - Michael B Bonsall
- Mathematical Ecology Research Group, Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK
| | - Bruce C Forbes
- Arctic Centre, University of Lapland, Pohjoisranta 4, Rovaniemi, 96100, Finland
| | - Pentti Zetterberg
- Department of Forest Sciences, University of Eastern Finland, Joensuu, 80101, Finland
| | - Elizabeth S Jeffers
- Oxford Long-Term Ecology Laboratory, Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK
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21
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Xie L, Zhou X, Liu Q, Zhao C, Yin C. Inorganic nitrogen uptake rate of Picea asperata curtailed by fine root acclimation to water and nitrogen supply and further by ectomycorrhizae. PHYSIOLOGIA PLANTARUM 2021; 173:2130-2141. [PMID: 34537962 DOI: 10.1111/ppl.13562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 09/09/2021] [Accepted: 09/16/2021] [Indexed: 06/13/2023]
Abstract
Ectomycorrhizal (ECM) fungi colonization and function depend on soil water and nutrient supply. To study the effects of resource supply on ECM colonization and inorganic nitrogen (N) uptake by roots of Picea asperata seedlings, we conducted a study at the end of a 5-year long experiment consisting of five watering regimes (40, 50, 60, 80, and 100% of field capacity) and three NH4 NO3 application rates (0 [N0], 20 [N1], and 40 [N2] g N m-2 year-1 ). We measured fluxes of ammonium ( NH 4 + ) and nitrate ( NO 3 - ) into colonized and uncolonized roots using noninvasive microtest technology. We found that, across the N supply levels, ECM colonization rate increased by 53 ± 14% from the highest to the lowest level of water supply. Across the watering regimes, the fraction of mycorrhizal root tips was 39 ± 4% higher under native N supply compared to roots grown under N additions. As expected for conifers, both colonized and uncolonized roots absorbed NH 4 + at a higher rate than NO 3 - . N additions reduced the instantaneous ion uptake rates of uncolonized roots grown under low water supply but enhanced the fluxes into roots grown under sufficient soil water availability. Soil water supply improves inorganic N uptake by uncolonized roots but reduces the efficiency of colonized roots. Under the lowest water supply regime, the uptake rate of NH 4 + and NO 3 - by colonized roots was 40-80% of those by uncolonized roots, decreasing to 20-30% as soil water supply improved. Taken together, our results suggest that the role ectomycorrhizae play in the nutrient acquisition of P. asperata seedling likely diminishes with increasing availability of soil resources.
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Affiliation(s)
- Lulu Xie
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization and Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- College of Life Science, University of Chinese Academy of Sciences, Beijing, China
| | - Xingmei Zhou
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization and Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Qinghua Liu
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization and Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Chunzhang Zhao
- State Environmental Protection Key Laboratory of Synergetic Control and Joint Remediation for Soil & Water Pollution, College of Ecology and Environment, Chengdu University of Technology, Chengdu, China
| | - Chunying Yin
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization and Ecological Restoration Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
- College of Life Science, University of Chinese Academy of Sciences, Beijing, China
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22
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Choi WJ, Chang SX, Kwak JH. Comment on Inorganic N addition replaces N supplied to switchgrass (Panicum virgatum) by arbuscular mycorrhizal fungi. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2021; 31:e2270. [PMID: 33278835 DOI: 10.1002/eap.2270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Revised: 08/08/2020] [Accepted: 10/05/2020] [Indexed: 06/12/2023]
Affiliation(s)
- Woo-Jung Choi
- Department of Rural and Bio-Systems Engineering, Education and Research Unit for Climate-Smart Reclaimed-Tideland Agriculture, Chonnam National University, Gwangju, 61186, Korea
| | - Scott X Chang
- Department of Renewable Resources, University of Alberta, Edmonton, Alberta, T6G 2E3, Canada
| | - Jin-Hyeob Kwak
- Department of Rural Construction Engineering, Jeonbuk National University, Jeonju, Jeollabukdo, 57896, Korea
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23
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Chen L, Jiang C, Wang X, Feng Q, Liu X, Tang Z, Sun OJ. Nutrient trade-offs mediated by ectomycorrhizal strategies in plants: Evidence from an Abies species in subalpine forests. Ecol Evol 2021; 11:5281-5294. [PMID: 34026006 PMCID: PMC8131813 DOI: 10.1002/ece3.7417] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 02/09/2021] [Accepted: 02/12/2021] [Indexed: 11/09/2022] Open
Abstract
Ectomycorrhizal (ECM) symbiosis is an evolutionary biological trait of higher plants for effective nutrient uptakes. However, little is known that how the formation and morphological differentiations of ECM roots mediate the nutrients of below- and aboveground plant tissues and the balance among nutrient elements across environmental gradients. Here, we investigated the effects of ECM foraging strategies on root and foliar N and P concentrations and N:P ratio Abies faxoniana under variations of climate and soil conditions.The ECM symbionts preferentially mediated P uptake under both N and P limitations. The uptake efficiency of N and P was primarily associated with the ECM root traits, for example, ECM root tip density, superficial area of ECM root tips, and the ratio of living to dead root tips, and was affected by the ECM proliferations and morphological differentiations. The tissue N and P concentrations were positively associated with the abundance of the contact exploration type and negatively with that of the short-distance exploration type.Our findings indicate that the nutritional status of both below- and aboveground plant tissues can be strongly affected by ECM symbiosis in natural environments. Variations in the ECM strategies in response to varying environmental conditions significantly influence plant nutrient uptakes and trade-offs.
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Affiliation(s)
- Lulu Chen
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
| | - Chao Jiang
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
| | - Xiangping Wang
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
| | - Qiuhong Feng
- Sichuan Wolong Forest Ecosystem Research StationSichuan Academy of ForestryChengduChina
- Ecological Restoration and Conservation on Forest and Wetland Key Laboratory of Sichuan ProvinceSichuan Academy of ForestryChengduChina
| | - Xingliang Liu
- Sichuan Wolong Forest Ecosystem Research StationSichuan Academy of ForestryChengduChina
- Ecological Restoration and Conservation on Forest and Wetland Key Laboratory of Sichuan ProvinceSichuan Academy of ForestryChengduChina
| | - Zuoxin Tang
- College of Agricultural and Life SciencesKunming UniversityKunmingChina
| | - Osbert Jianxin Sun
- School of Ecology and Nature ConservationBeijing Forestry UniversityBeijingChina
- Institute of Forestry and Climate Change ResearchBeijing Forestry UniversityBeijingChina
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24
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Pellitier PT, Zak DR, Argiroff WA, Upchurch RA. Coupled Shifts in Ectomycorrhizal Communities and Plant Uptake of Organic Nitrogen Along a Soil Gradient: An Isotopic Perspective. Ecosystems 2021. [DOI: 10.1007/s10021-021-00628-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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25
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Deckmyn G, Flores O, Mayer M, Domene X, Schnepf A, Kuka K, Van Looy K, Rasse DP, Briones MJ, Barot S, Berg M, Vanguelova E, Ostonen I, Vereecken H, Suz LM, Frey B, Frossard A, Tiunov A, Frouz J, Grebenc T, Öpik M, Javaux M, Uvarov A, Vindušková O, Henning Krogh P, Franklin O, Jiménez J, Curiel Yuste J. KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models. I. review and model concept. PeerJ 2020; 8:e9750. [PMID: 32974092 PMCID: PMC7486829 DOI: 10.7717/peerj.9750] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 07/27/2020] [Indexed: 11/20/2022] Open
Abstract
The relatively poor simulation of the below-ground processes is a severe drawback for many ecosystem models, especially when predicting responses to climate change and management. For a meaningful estimation of ecosystem production and the cycling of water, energy, nutrients and carbon, the integration of soil processes and the exchanges at the surface is crucial. It is increasingly recognized that soil biota play an important role in soil organic carbon and nutrient cycling, shaping soil structure and hydrological properties through their activity, and in water and nutrient uptake by plants through mycorrhizal processes. In this article, we review the main soil biological actors (microbiota, fauna and roots) and their effects on soil functioning. We review to what extent they have been included in soil models and propose which of them could be included in ecosystem models. We show that the model representation of the soil food web, the impact of soil ecosystem engineers on soil structure and the related effects on hydrology and soil organic matter (SOM) stabilization are key issues in improving ecosystem-scale soil representation in models. Finally, we describe a new core model concept (KEYLINK) that integrates insights from SOM models, structural models and food web models to simulate the living soil at an ecosystem scale.
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Affiliation(s)
- Gaby Deckmyn
- Department of Biology, Plants and Ecosystems (PLECO), Universiteit Antwerpen, Antwerpen, Belgium
| | - Omar Flores
- Department of Biology, Plants and Ecosystems (PLECO), Universiteit Antwerpen, Antwerpen, Belgium
- Biogeography and Global Change, National Museum of Natural Sciences-Spanish National Research Council (MNCN-CSIC), Madrid, Spain
| | - Mathias Mayer
- Institute of Forest Ecology, Department of Forest and Soil Sciences, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria
- Biogeochemistry Group, Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland
| | - Xavier Domene
- CREAF, Cerdanyola del Vallès, Spain
- Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain
| | - Andrea Schnepf
- Agrosphere Institute, IBG, Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Katrin Kuka
- Institute for Crop and Soil Science, Julius Kühn-Institut (JKI), Braunschwei, Germany
| | - Kris Van Looy
- OVAM, Flemish Institute for Materials and Soils, Mechelen, Belgium
| | - Daniel P. Rasse
- Department of Biogeochemistry and Soil Quality, Norwegian Institute of Bioeconomy Research (NIBIO), Aas, Norway
| | - Maria J.I. Briones
- Departamento de Ecología y Biología Animal, Universidad de Vigo, Vigo, Spain
| | - Sébastien Barot
- Institute of Ecology and Environmental Sciences, IRD, UPEC, CNRS, INRA, Sorbonne Université, Paris, France
| | - Matty Berg
- Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
- Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, Netherlands
| | | | - Ivika Ostonen
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Harry Vereecken
- Agrosphere Institute, IBG, Forschungszentrum Jülich GmbH, Jülich, Germany
| | - Laura M. Suz
- Comparative Plant and Fungal Biology, Royal Botanic Gardens, Kew, London, UK
| | - Beat Frey
- Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland
| | - Aline Frossard
- Forest Soils and Biogeochemistry, Swiss Federal Research Institute WSL, Birmensdorf, Switzerland
| | - Alexei Tiunov
- A.N. Severtsov Institute of Ecology and Evolution RAS, Moscow, Russia
| | - Jan Frouz
- Institute for Environmental Studies, Charles University, Prague, Czech Republic
| | - Tine Grebenc
- Slovenian Forestry Institute, Ljubljana, Slovenia
| | - Maarja Öpik
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Mathieu Javaux
- Agrosphere Institute, IBG, Forschungszentrum Jülich GmbH, Jülich, Germany
- Earth and Life Institute, UCLouvain, Louvain-la-Neuve, Belgium
| | - Alexei Uvarov
- A.N. Severtsov Institute of Ecology and Evolution RAS, Moscow, Russia
| | - Olga Vindušková
- Department of Biology, Plants and Ecosystems (PLECO), Universiteit Antwerpen, Antwerpen, Belgium
| | | | - Oskar Franklin
- Department of Forest Ecology and Management, Swedish University of Agricultural Sciences, Umeå, Sweden
- International Institute for Applied Systems Analysis IIASA, Laxenburg, Austria
| | - Juan Jiménez
- Department of Biodiversity Conservation and Ecosystem Restoration, ARAID/IPE-CSIC, Jaca, Spain
| | - Jorge Curiel Yuste
- BC3-Basque Centre for Climate Change, Scientific Campus of the University of the Basque Country, Bilbao, Bizkaia, Spain
- IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
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26
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Abrego N, Huotari T, Tack AJM, Lindahl BD, Tikhonov G, Somervuo P, Martin Schmidt N, Ovaskainen O, Roslin T. Higher host plant specialization of root-associated endophytes than mycorrhizal fungi along an arctic elevational gradient. Ecol Evol 2020; 10:8989-9002. [PMID: 32884673 PMCID: PMC7452766 DOI: 10.1002/ece3.6604] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Revised: 06/02/2020] [Accepted: 06/29/2020] [Indexed: 12/16/2022] Open
Abstract
How community-level specialization differs among groups of organisms, and changes along environmental gradients, is fundamental to understanding the mechanisms influencing ecological communities. In this paper, we investigate the specialization of root-associated fungi for plant species, asking whether the level of specialization varies with elevation. For this, we applied DNA barcoding based on the ITS region to root samples of five plant species equivalently sampled along an elevational gradient at a high arctic site. To assess whether the level of specialization changed with elevation and whether the observed patterns varied between mycorrhizal and endophytic fungi, we applied a joint species distribution modeling approach. Our results show that host plant specialization is not environmentally constrained in arctic root-associated fungal communities, since there was no evidence for changing specialization with elevation, even if the composition of root-associated fungal communities changed substantially. However, the level of specialization for particular plant species differed among fungal groups, root-associated endophytic fungal communities being highly specialized on particular host species, and mycorrhizal fungi showing almost no signs of specialization. Our results suggest that plant identity affects associated mycorrhizal and endophytic fungi differently, highlighting the need of considering both endophytic and mycorrhizal fungi when studying specialization in root-associated fungal communities.
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Affiliation(s)
- Nerea Abrego
- Department of Agricultural SciencesUniversity of HelsinkiHelsinkiFinland
- Centre for Biodiversity DynamicsDepartment of BiologyNorwegian University of Science and TechnologyTrondheimNorway
| | - Tea Huotari
- Department of Agricultural SciencesUniversity of HelsinkiHelsinkiFinland
| | - Ayco J. M. Tack
- Department of EcologyEnvironment and Plant SciencesStockholm UniversityStockholmSweden
| | - Björn D. Lindahl
- Department of Soil and EnvironmentSwedish University of Agricultural SciencesUppsalaSweden
| | - Gleb Tikhonov
- Organismal and Evolutionary Biology Research ProgrammeUniversity of HelsinkiHelsinkiFinland
- Computational Systems Biology groupDepartment of Computer ScienceAalto UniversityEspooFinland
| | - Panu Somervuo
- Organismal and Evolutionary Biology Research ProgrammeUniversity of HelsinkiHelsinkiFinland
| | | | - Otso Ovaskainen
- Centre for Biodiversity DynamicsDepartment of BiologyNorwegian University of Science and TechnologyTrondheimNorway
- Organismal and Evolutionary Biology Research ProgrammeUniversity of HelsinkiHelsinkiFinland
| | - Tomas Roslin
- Department of Agricultural SciencesUniversity of HelsinkiHelsinkiFinland
- Department of EcologySwedish University of Agricultural SciencesUppsalaSweden
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27
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Abrego N, Roslin T, Huotari T, Tack AJM, Lindahl BD, Tikhonov G, Somervuo P, Schmidt NM, Ovaskainen O. Accounting for environmental variation in co‐occurrence modelling reveals the importance of positive interactions in root‐associated fungal communities. Mol Ecol 2020; 29:2736-2746. [DOI: 10.1111/mec.15516] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2019] [Revised: 05/29/2020] [Accepted: 06/09/2020] [Indexed: 01/11/2023]
Affiliation(s)
- Nerea Abrego
- Department of Agricultural Sciences University of Helsinki Helsinki Finland
| | - Tomas Roslin
- Department of Agricultural Sciences University of Helsinki Helsinki Finland
- Department of Ecology Swedish University of Agricultural Sciences Uppsala Sweden
| | - Tea Huotari
- Department of Agricultural Sciences University of Helsinki Helsinki Finland
| | - Ayco J. M. Tack
- Department of Ecology, Environment and Plant Sciences Stockholm University Stockholm Sweden
| | - Björn D. Lindahl
- Department of Soil and Environment Swedish University of Agricultural Sciences Uppsala Sweden
| | - Gleb Tikhonov
- Computational Systems Biology Group Department of Computer Science Aalto University Espoo Finland
| | - Panu Somervuo
- Organismal and Evolutionary Biology Research Programme University of Helsinki Helsinki Finland
| | - Niels Martin Schmidt
- Arctic Research Centre Department of Bioscience Aarhus University Roskilde Denmark
| | - Otso Ovaskainen
- Organismal and Evolutionary Biology Research Programme University of Helsinki Helsinki Finland
- Centre for Biodiversity Dynamics Department of Biology Norwegian University of Science and Technology Trondheim Norway
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28
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Kou D, Yang G, Li F, Feng X, Zhang D, Mao C, Zhang Q, Peng Y, Ji C, Zhu Q, Fang Y, Liu X, Xu-Ri, Li S, Deng J, Zheng X, Fang J, Yang Y. Progressive nitrogen limitation across the Tibetan alpine permafrost region. Nat Commun 2020; 11:3331. [PMID: 32620773 PMCID: PMC7335038 DOI: 10.1038/s41467-020-17169-6] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 06/15/2020] [Indexed: 11/13/2022] Open
Abstract
The ecosystem carbon (C) balance in permafrost regions, which has a global significance in understanding the terrestrial C-climate feedback, is significantly regulated by nitrogen (N) dynamics. However, our knowledge on temporal changes in vegetation N limitation (i.e., the supply of N relative to plant N demand) in permafrost ecosystems is still limited. Based on the combination of isotopic observations derived from a re-sampling campaign along a ~3000 km transect and simulations obtained from a process-based biogeochemical model, here we detect changes in ecosystem N cycle across the Tibetan alpine permafrost region over the past decade. We find that vegetation N limitation becomes stronger despite the increased available N production. The enhanced N limitation on vegetation growth is driven by the joint effects of elevated plant N demand and gaseous N loss. These findings suggest that N would constrain the future trajectory of ecosystem C cycle in this alpine permafrost region.
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Affiliation(s)
- Dan Kou
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- Biogeochemistry Research Group, Department of Biological and Environmental Sciences, University of Eastern Finland, Kuopio, 70210, Finland
- Earth, Atmospheric and Planetary Sciences, Purdue University, West Lafayette, IN, 47907, USA
| | - Guibiao Yang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Fei Li
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xuehui Feng
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Dianye Zhang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Chao Mao
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Qiwen Zhang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yunfeng Peng
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Chengjun Ji
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
| | - Qiuan Zhu
- College of Hydrology and Water Resources, Hohai University, Nanjing, 210098, China
| | - Yunting Fang
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China
| | - Xueyan Liu
- School of Earth System Science, Tianjin University, Tianjin, 300072, China
| | - Xu-Ri
- Key Laboratory of Alpine Ecology and Biodiversity, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Siqi Li
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Jia Deng
- Earth Systems Research Centre, Institute for the Study of Earth, Oceans and Space, University of New Hampshire, Durham, NH, 03824, USA
| | - Xunhua Zheng
- University of Chinese Academy of Sciences, Beijing, 100049, China
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, 100029, China
| | - Jingyun Fang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- Institute of Ecology, College of Urban and Environmental Sciences, and Key Laboratory for Earth Surface Processes of the Ministry of Education, Peking University, Beijing, 100871, China
| | - Yuanhe Yang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
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Jach-Smith LC, Jackson RD. Inorganic N addition replaces N supplied to switchgrass (Panicum virgatum) by arbuscular mycorrhizal fungi. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2020; 30:e02047. [PMID: 31758822 DOI: 10.1002/eap.2047] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Revised: 02/20/2019] [Accepted: 04/25/2019] [Indexed: 06/10/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) provide many benefits in agroecosystems including improved soil tilth, carbon sequestration, and water and nutrient transfer to plants. AMF are known to affect plant nitrogen (N) dynamics and transfer N to plants, but there have been few studies addressing whether the amount of N transferred to plants by AMF is agronomically relevant. We used δ15 N natural abundance methods and δ15 N mass balance equations to estimate the amount of plant N derived from AMF transfer in perennial grasses managed for bioenergy production under different N addition treatments (0, 56, and 196 kg N/ha). Differentiation of δ15 N among plant, soil N, and AMF pools was higher than anticipated leading to calculations of 34-55% of plant N transferred by AMF in the treatments receiving no N addition to 6-22% of plant N transferred to plants in high-N addition treatments. AMF extra-radical hyphae biomass was significantly reduced in the high-N (196 kg N/ha) addition treatments, which was negatively correlated to enriched plant δ15 N. Our results suggest that N addition decreases AMF N transfer to plants. When N was limiting to plant growth, AMF supplied agronomically significant amounts of plant N, and a higher proportion of overall plant N. Because differentiation between N pools was greater than expected, stable isotope measurements can be used to estimate N transfer to AMF plant hosts.
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Affiliation(s)
- Laura C Jach-Smith
- Nelson Institute for Environmental Studies, University of Wisconsin-Madison, 550 North Park Street, Madison, Wisconsin, 53706, USA
- DOE-Great Lakes Bioenergy Research Center, 1552 University Avenue, Madison, Wisconsin, 53726, USA
| | - Randall D Jackson
- Nelson Institute for Environmental Studies, University of Wisconsin-Madison, 550 North Park Street, Madison, Wisconsin, 53706, USA
- DOE-Great Lakes Bioenergy Research Center, 1552 University Avenue, Madison, Wisconsin, 53726, USA
- Department of Agronomy, University of Wisconsin-Madison, 1575 Linden Drive, Madison, Wisconsin, 53706, USA
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30
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Isotopic constraints on plant nitrogen acquisition strategies during ecosystem retrogression. Oecologia 2020; 192:603-614. [PMID: 32025895 DOI: 10.1007/s00442-020-04606-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 01/16/2020] [Indexed: 10/25/2022]
Abstract
Plant root associations with microbes such as mycorrhizal fungi or N-fixing bacteria enable ecosystems to tap pools of nitrogen (N) that might otherwise be inaccessible, including atmospheric N or N in large soil organic molecules. Such microbially assisted N-foraging strategies may be particularly important in late-successional retrogressive ecosystems where productivity is low and soil nutrients are scarce. Here, we use natural N-stable isotopic composition to constrain pathways of N supplies to different plant functional groups across a well-studied natural soil fertility gradient that includes a highly retrogressive stage. We demonstrate that ectomycorrhizal fungi, ericoid mycorrhizal fungi, and N-fixing bacteria support forest N supplies at all stages of ecosystem succession, from relatively young, N-rich/phosphorus (P)-rich sites, to ancient sites (ca. 500 ky) where both N supplies and P supplies are exceedingly low. Microbially mediated N sources are most important in older ecosystems with very low soil nutrient availability, accounting for 75-96% of foliar N at the oldest, least fertile sites. These isotopically ground findings point to the key role of plant-microbe associations in shaping ecosystem processes and functioning, particularly in retrogressive-phase forest ecosystems.
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31
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Salazar A, Rousk K, Jónsdóttir IS, Bellenger J, Andrésson ÓS. Faster nitrogen cycling and more fungal and root biomass in cold ecosystems under experimental warming: a meta-analysis. Ecology 2020; 101:e02938. [PMID: 31750541 PMCID: PMC7027553 DOI: 10.1002/ecy.2938] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 10/01/2019] [Accepted: 10/18/2019] [Indexed: 11/13/2022]
Abstract
Warming can alter the biogeochemistry and ecology of soils. These alterations can be particularly large in high northern latitude ecosystems, which are experiencing the most intense warming globally. In this meta-analysis, we investigated global trends in how experimental warming is altering the biogeochemistry of the most common limiting nutrient for biological processes in cold ecosystems of high northern latitudes (>50°): nitrogen (N). For comparison, we also analyzed cold ecosystems at intermediate and high southern latitudes. In addition, we examined N-relevant genes and enzymes, and the abundance of belowground organisms. Together, our findings suggest that warming in cold ecosystems increases N mineralization rates and N2 O emissions and does not affect N fixation, at least not in a consistent way across biomes and conditions. Changes in belowground N fluxes caused by warming lead to an accumulation of N in the forms of dissolved organic and root N. These changes seem to be more closely linked to increases in enzyme activity that target relatively labile N sources, than to changes in the abundance of N-relevant genes (e.g., amoA and nosZ). Finally, our analysis suggests that warming in cold ecosystems leads to an increase in plant roots, fungi, and (likely in an indirect way) fungivores, and does not affect the abundance of archaea, bacteria, or bacterivores. In summary, our findings highlight global trends in the ways warming is altering the biogeochemistry and ecology of soils in cold ecosystems, and provide information that can be valuable for prediction of changes and for management of such ecosystems.
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Affiliation(s)
- Alejandro Salazar
- Faculty of Life and Environmental SciencesUniversity of IcelandSturlugata 7101ReykjavíkIceland
| | - Kathrin Rousk
- Department of BiologyTerrestrial Ecology SectionUniversity of CopenhagenUniversitetsparken 152100CopenhagenDenmark
- Center for Permafrost (CENPERM)University of CopenhagenØster Voldgade 101350CopenhagenDenmark
| | - Ingibjörg S. Jónsdóttir
- Faculty of Life and Environmental SciencesUniversity of IcelandSturlugata 7101ReykjavíkIceland
| | - Jean‐Philippe Bellenger
- Centre SeveDepartment of ChemistryFaculty of SciencesUniversite de SherbrookeJ1K2R1SherbrookeQuebecCanada
| | - Ólafur S. Andrésson
- Faculty of Life and Environmental SciencesUniversity of IcelandSturlugata 7101ReykjavíkIceland
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32
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Bonsall MB, Froyd CA, Jeffers ES. Resilience: nitrogen limitation, mycorrhiza and long-term palaeoecological plant-nutrient dynamics. Biol Lett 2020; 16:20190441. [PMID: 31964260 DOI: 10.1098/rsbl.2019.0441] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Ecosystem dynamics are driven by both biotic and abiotic processes, and perturbations can push ecosystems into novel dynamical regimes. Plant-plant, plant-soil and mycorrhizal associations all affect plant ecosystem dynamics; however, the direction and magnitude of these effects vary by context and their contribution to ecosystem resilience over long time periods remains unknown. Here, using a mathematical framework, we investigate the effects of plant feedbacks and mycorrhiza on plant-nutrient interactions. We show evidence for strong nutrient controlled feedbacks, moderation by mycorrhiza and influence on ecological resilience. We use this model to investigate the resilience of a longitudinal palaeoecological birch-δ15N interaction to plant-soil feedbacks and mycorrhizal associations. The birch-δ15N system demonstrated high levels of resilience. Mycorrhiza were predicted to increase resilience by supporting plant-nitrogen uptake and immobilizing excess nitrogen; in contrast, long-term enrichment in available nitrogen by plant-soil feedbacks is expected to decrease ecological resilience.
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Affiliation(s)
- Michael B Bonsall
- Mathematical Ecology Research Group, Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
| | - Cynthia A Froyd
- Department of Biosciences, Swansea University, Swansea SA2 8PP, UK
| | - Elizabeth S Jeffers
- Oxford Long-Term Ecology Laboratory, Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
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Stuart EK, Plett KL. Digging Deeper: In Search of the Mechanisms of Carbon and Nitrogen Exchange in Ectomycorrhizal Symbioses. FRONTIERS IN PLANT SCIENCE 2020; 10:1658. [PMID: 31993064 PMCID: PMC6971170 DOI: 10.3389/fpls.2019.01658] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Accepted: 11/25/2019] [Indexed: 05/12/2023]
Abstract
Symbiosis with ectomycorrhizal (ECM) fungi is an advantageous partnership for trees in nutrient-limited environments. Ectomycorrhizal fungi colonize the roots of their hosts and improve their access to nutrients, usually nitrogen (N) and, in exchange, trees deliver a significant portion of their photosynthetic carbon (C) to the fungi. This nutrient exchange affects key soil processes and nutrient cycling, as well as plant health, and is therefore central to forest ecosystem functioning. Due to their ecological importance, there is a need to more accurately understand ECM fungal mediated C and N movement within forest ecosystems such that we can better model and predict their role in soil processes both now and under future climate scenarios. There are a number of hurdles that we must overcome, however, before this is achievable such as understanding how the evolutionary history of ECM fungi and their inter- and intra- species variability affect their function. Further, there is currently no generally accepted universal mechanism that appears to govern the flux of nutrients between fungal and plant partners. Here, we consider the current state of knowledge on N acquisition and transport by ECM fungi and how C and N exchange may be related or affected by environmental conditions such as N availability. We emphasize the role that modern genomic analysis, molecular biology techniques and more comprehensive and standardized experimental designs may have in bringing cohesion to the numerous ecological studies in this area and assist us in better understanding this important symbiosis. These approaches will help to build unified models of nutrient exchange and develop diagnostic tools to study these fungi at various scales and environments.
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Affiliation(s)
| | - Krista L. Plett
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, Australia
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34
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Frey SD. Mycorrhizal Fungi as Mediators of Soil Organic Matter Dynamics. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2019. [DOI: 10.1146/annurev-ecolsys-110617-062331] [Citation(s) in RCA: 125] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Inhabiting the interface between plant roots and soil, mycorrhizal fungi play a unique but underappreciated role in soil organic matter (SOM) dynamics. Their hyphae provide an efficient mechanism for distributing plant carbon throughout the soil, facilitating its deposition into soil pores and onto mineral surfaces, where it can be protected from microbial attack. Mycorrhizal exudates and dead tissues contribute to the microbial necromass pool now known to play a dominant role in SOM formation and stabilization. While mycorrhizal fungi lack the genetic capacity to act as saprotrophs, they use several strategies to access nutrients locked in SOM and thereby promote its decay, including direct enzymatic breakdown, oxidation via Fenton chemistry, and stimulation of heterotrophic microorganisms through carbon provision to the rhizosphere. An additional mechanism, competition with free-living saprotrophs, potentially suppresses SOM decomposition, leading to its accumulation. How these various nutrient acquisition strategies differentially influence SOM formation, stabilization, and loss is an area of critical research need.
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Affiliation(s)
- Serita D. Frey
- Department of Natural Resources and the Environment, University of New Hampshire, Durham, New Hampshire 03824, USA
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35
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Brody AK, Waterman B, Ricketts TH, Degrassi AL, González JB, Harris JM, Richardson LL. Genotype-specific effects of ericoid mycorrhizae on floral traits and reproduction in Vaccinium corymbosum. AMERICAN JOURNAL OF BOTANY 2019; 106:1412-1422. [PMID: 31675110 PMCID: PMC6899715 DOI: 10.1002/ajb2.1372] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Accepted: 09/03/2019] [Indexed: 05/28/2023]
Abstract
PREMISE Most plants interact with mycorrhizal fungi and animal pollinators simultaneously. Yet, whether mycorrhizae affect traits important to pollination remains poorly understood and may depend on the match between host and fungal genotypes. Here, we examined how ericoid mycorrhizal fungi affected flowering phenology, floral traits, and reproductive success, among eight genotypes of highbush blueberry, Vaccinium corymbosum (Ericaceae). We asked three overarching questions: (1) Do genotypes differ in response to inoculation? (2) How does inoculation affect floral and flowering traits? (3) Are inoculated plants more attractive to pollinators and less pollen limited than non-inoculated plants of the same genotype? METHODS To examine these questions, we experimentally inoculated plants with ericoid mycorrhizal fungi, grew the plants in the field, and measured flowering and floral traits over 2 years. In year 2, we conducted a hand-pollination experiment to test whether plants differed in pollen limitation. RESULTS Inoculated plants had significantly higher levels of colonization for some genotypes, and there were significant floral trait changes in inoculated plants for some genotypes as well. On average, inoculated plants produced significantly larger floral displays, more fruits per inflorescence, and heavier fruits with lower sugar content, than non-inoculated, control plants. Hand pollination enhanced the production of fruits, and fruit mass, for non-inoculated plants but not for those that were inoculated. CONCLUSIONS Our results demonstrate that inoculation with ericoid mycorrhizal fungi enhanced flowering and altered investment in reproduction in genotype-specific ways. These findings underscore the importance of examining belowground symbionts and genotype-specific responses in their hosts to fully understand the drivers of aboveground interactions.
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Affiliation(s)
- Alison K. Brody
- Department of BiologyUniversity of VermontBurlingtonVT05405USA
| | - Benjamin Waterman
- University of VermontExtension Center for Sustainable AgricultureBurlingtonVT05401USA
- Waterman OrchardsJohnsonVT05656USA
| | - Taylor H. Ricketts
- Gund Institute for EnvironmentUniversity of VermontBurlingtonVT05405USA
- Rubenstein School of Environment and Natural ResourcesUniversity of VermontBurlingtonVT05405USA
| | - Allyson L. Degrassi
- Department of BiologyUniversity of VermontBurlingtonVT05405USA
- Department of Land ResourcesGlenville State CollegeGlenvilleWV26351USA
| | - Jonathan B. González
- Department of BiologyUniversity of VermontBurlingtonVT05405USA
- Section of Plant Pathology and Plant–Microbe BiologySchool of Integrative Plant ScienceCornell UniversityIthacaNY14853USA
| | - Jeanne M. Harris
- Department of Plant BiologyUniversity of VermontBurlingtonVT05405USA
| | - Leif L. Richardson
- Gund Institute for EnvironmentUniversity of VermontBurlingtonVT05405USA
- Rubenstein School of Environment and Natural ResourcesUniversity of VermontBurlingtonVT05405USA
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36
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Salmon VG, Breen AL, Kumar J, Lara MJ, Thornton PE, Wullschleger SD, Iversen CM. Alder Distribution and Expansion Across a Tundra Hillslope: Implications for Local N Cycling. FRONTIERS IN PLANT SCIENCE 2019; 10:1099. [PMID: 31681340 PMCID: PMC6807776 DOI: 10.3389/fpls.2019.01099] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Accepted: 08/09/2019] [Indexed: 05/14/2023]
Abstract
Increases in the availability of nitrogen (N) may have consequences for plant growth and nutrient cycling in N-limited tundra plant communities. We investigated the impact alder (Alnus viridis spp. fruticosa), an N-fixing deciduous shrub, has on tundra N cycling at a hillslope located on Alaska's Seward Peninsula. We quantified N fixation using 15N2 incubations within two distinct alder communities at this site: alder shrublands located on well-drained, rocky outcroppings in the uplands and alder savannas located in water tracks along the moist toeslope of the hill. Annual N fixation rates in alder shrublands were 1.95 ± 0.68 g N m-2 year-1, leading to elevated N levels in adjacent soils and plants. Alder savannas had lower N fixation rates (0.53 ± 0.19 g N m-2 year-1), perhaps due to low phosphorus availability and poor drainage in these highly organic soil profiles underlain by permafrost. In addition to supporting higher rates of N fixation, tall-statured alder shrublands had different foliar traits than relatively short-statured alder in savannas, providing an opportunity to link N fixation to remotely-sensed variables. We were able to generate a map of the alder shrubland distribution at this site using a multi-sensor fusion approach. The change in alder shrubland distribution through time was also determined from historic aerial and satellite imagery. Analysis of historic imagery showed that the area of alder shrublands at this site has increased by 40% from 1956 to 2014. We estimate this increase in alder shrublands was associated with a 22% increase in N fixation. Our results suggest that expansion of alder shrublands has the potential to substantially alter N cycling, increase plant productivity, and redistribute C storage in upland tundra regions. An improved understanding of the consequences of N fixation within N-limited tundra plant communities will therefore be crucial for predicting the biogeochemistry of these warming ecosystems.
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Affiliation(s)
- Verity G. Salmon
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Amy L. Breen
- International Arctic Research Center, University of Alaska, Fairbanks, AK, United States
| | - Jitendra Kumar
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Mark J. Lara
- Department of Plant Biology, University of Illinois, Urbana, IL, United States
- Department of Geography, University of Illinois, Urbana, IL, United States
| | - Peter E. Thornton
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Stan D. Wullschleger
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Colleen M. Iversen
- Environmental Sciences Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN, United States
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37
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Canini F, Zucconi L, Pacelli C, Selbmann L, Onofri S, Geml J. Vegetation, pH and Water Content as Main Factors for Shaping Fungal Richness, Community Composition and Functional Guilds Distribution in Soils of Western Greenland. Front Microbiol 2019; 10:2348. [PMID: 31681213 PMCID: PMC6797927 DOI: 10.3389/fmicb.2019.02348] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 09/26/2019] [Indexed: 01/29/2023] Open
Abstract
Fungi are the most abundant and one of the most diverse components of arctic soil ecosystems, where they are fundamental drivers of plant nutrient acquisition and recycling. Nevertheless, few studies have focused on the factors driving the diversity and functionality of fungal communities associated with these ecosystems, especially in the scope of global warming that is particularly affecting Greenland and is leading to shrub expansion, with expected profound changes of soil microbial communities. We used soil DNA metabarcoding to compare taxonomic and functional composition of fungal communities in three habitats [bare ground (BG), biological soil crusts (BSC), and vascular vegetation (VV) coverage] in Western Greenland. Fungal richness increased with the increasing complexity of the coverage, but BGs and BSCs samples showed the highest number of unique OTUs. Differences in both fungal community composition and distribution of functional guilds identified were correlated with edaphic factors (mainly pH and water content), in turn connected with the different type of coverage. These results suggest also possible losses of diversity connected to the expansion of VV and possible interactions among the members of different functional guilds, likely due to the nutrient limitation, with potential effects on elements recycling.
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Affiliation(s)
- Fabiana Canini
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Biodiversity Dynamics, Naturalis Biodiversity Center, Leiden, Netherlands
| | - Laura Zucconi
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Claudia Pacelli
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - Laura Selbmann
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
- Section of Mycology, Italian National Antarctic Museum (MNA), Genoa, Italy
| | - Silvano Onofri
- Department of Ecological and Biological Sciences, University of Tuscia, Viterbo, Italy
| | - József Geml
- Biodiversity Dynamics, Naturalis Biodiversity Center, Leiden, Netherlands
- Faculty of Science, Leiden University, Leiden, Netherlands
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38
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Saravesi K, Markkola A, Taulavuori E, Syvänperä I, Suominen O, Suokas M, Saikkonen K, Taulavuori K. Impacts of experimental warming and northern light climate on growth and root fungal communities of Scots pine populations. FUNGAL ECOL 2019. [DOI: 10.1016/j.funeco.2018.12.010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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39
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Tedersoo L, Bahram M. Mycorrhizal types differ in ecophysiology and alter plant nutrition and soil processes. Biol Rev Camb Philos Soc 2019; 94:1857-1880. [PMID: 31270944 DOI: 10.1111/brv.12538] [Citation(s) in RCA: 95] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2018] [Revised: 05/27/2019] [Accepted: 05/30/2019] [Indexed: 12/13/2022]
Abstract
Mycorrhizal fungi benefit plants by improved mineral nutrition and protection against stress, yet information about fundamental differences among mycorrhizal types in fungi and trees and their relative importance in biogeochemical processes is only beginning to accumulate. We critically review and synthesize the ecophysiological differences in ectomycorrhizal, ericoid mycorrhizal and arbuscular mycorrhizal symbioses and the effect of these mycorrhizal types on soil processes from local to global scales. We demonstrate that guilds of mycorrhizal fungi display substantial differences in genome-encoded capacity for mineral nutrition, particularly acquisition of nitrogen and phosphorus from organic material. Mycorrhizal associations alter the trade-off between allocation to roots or mycelium, ecophysiological traits such as root exudation, weathering, enzyme production, plant protection, and community assembly as well as response to climate change. Mycorrhizal types exhibit differential effects on ecosystem carbon and nutrient cycling that affect global elemental fluxes and may mediate biome shifts in response to global change. We also note that most studies performed to date have not been properly replicated and collectively suffer from strong geographical sampling bias towards temperate biomes. We advocate that combining carefully replicated field experiments and controlled laboratory experiments with isotope labelling and -omics techniques offers great promise towards understanding differences in ecophysiology and ecosystem services among mycorrhizal types.
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Affiliation(s)
- Leho Tedersoo
- Natural History Museum, University of Tartu, 14a Ravila, 50411 Tartu, Estonia.,Institute of Ecology and Earth Sciences, University of Tartu, 14a Ravila, 50411 Tartu, Estonia
| | - Mohammad Bahram
- Institute of Ecology and Earth Sciences, University of Tartu, 14a Ravila, 50411 Tartu, Estonia.,Department of Ecology, Swedish University of Agricultural Sciences, Ulls väg 16, 756 51 Uppsala, Sweden
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40
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Presence of Mycorrhizal Fungal Hyphae Rather than Living Roots Retards Root Litter Decomposition. FORESTS 2019. [DOI: 10.3390/f10060502] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Although both living roots and mycorrhizal fungi are well known to interact with saprotrophic microbes to affect litter decomposition, their relative importance is largely unclear. Here, a two-year pot experiment was conducted with two ectomycorrhizal (Pinus elliottii and Pinus massoniana) and four arbuscular mycorrhizal (Cinnamomum camphora, Cunninghamia lanceolata, Michelia maudiae and Schima superba) subtropical tree species to evaluate the relative effects of living roots and mycorrhizal fungal hyphae on their own root litter decomposition and to test whether these effects differed between ectomycorrhizal and arbuscular mycorrhizal trees. To achieve these objectives, litterbags with 50-µm and 1-mm mesh sizes filled with root litter of a given tree species were simultaneously installed in pots planted with the same species and unplanted pots filled with composite soil for all species. Effects of living roots alone were calculated as differences in root litter decomposition between 50-µm and 1-mm mesh litterbags installed in planted pots. Mycorrhizal hyphal effects were calculated as differences in root litter decomposition between 50-µm litterbags installed in planted and unplanted pots. The presence of mycorrhizal fungal hyphae significantly reduced root litter mass loss and inhibited the activities of β-glucosidase and phenol oxidase, while effects of living roots alone were non-significant when all tree species were pooled and inconsistent at the tree species level. Mycorrhizal fungal hyphae induced decreases in root litter mass loss that were markedly related to their inhibitory effects on β-glucosidase and phenol oxidase activities. When tree species were grouped by their mycorrhizal types, non-significant differences were observed between ectomycorrhizal and arbuscular mycorrhizal trees in their living root or mycorrhizal fungal effects on root litter decomposition. These findings highlight the important roles of mycorrhizal fungi in mediating litter decomposition via interacting with saprotrophic microbes and suggest that changes in tree carbon allocation to mycorrhizal fungi owing to global change may affect soil carbon storage.
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Cruz-Paredes C, Frøslev TG, Michelsen A, Bang-Andreasen T, Hansen M, Ingerslev M, Skov S, Wallander H, Kjøller R. Wood ash application in a managed Norway spruce plantation did not affect ectomycorrhizal diversity or N retention capacity. FUNGAL ECOL 2019. [DOI: 10.1016/j.funeco.2018.11.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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42
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Addis CE, Bret‐Harte MS. The importance of secondary growth to plant responses to snow in the arctic. Funct Ecol 2019. [DOI: 10.1111/1365-2435.13323] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Claire E. Addis
- Department of Biology and Wildlife University of Alaska Fairbanks Fairbanks Alaska
- Institute of Arctic Biology University of Alaska Fairbanks Fairbanks Alaska
| | - Marion S. Bret‐Harte
- Department of Biology and Wildlife University of Alaska Fairbanks Fairbanks Alaska
- Institute of Arctic Biology University of Alaska Fairbanks Fairbanks Alaska
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Kothamasi D, Wannijn J, Van Hees M, Nauts R, Van Gompel A, Vanhoudt N, Vandenhove H. Exposure to ionizing radiation affects the growth of ectomycorrhizal fungi and induces increased melanin production and increased capacities of reactive oxygen species scavenging enzymes. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2019; 197:16-22. [PMID: 30500479 DOI: 10.1016/j.jenvrad.2018.11.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Revised: 10/12/2018] [Accepted: 11/06/2018] [Indexed: 06/09/2023]
Abstract
Ectomycorrhizal (EM) fungi form symbioses with dominant tree families in boreal, temperate and tropical ecosystems and are important drivers of ecosystem function. EM fungal hyphae extend over a large area making them susceptible to enhanced radiation levels from naturally occurring or anthropogenically originating radioisotopes in the rhizosphere. In this study, the in-vitro effects of ionizing radiation on the growth and biomass of EM fungi Suillus luteus, S. bovinus and Rhizopogon luteolus were investigated. EM fungal cultures were exposed to gamma radiation from a 137Cs source for 137 h in darkness at 21 °C at dose rates of 404, 108.5 and 54.9 mGy h-1 resulting in total absorbed doses of 55.21, 14.82 and 7.50 Gy respectively. Cultures grown in the dark at 21 °C but not exposed to the 137Cs source served as the control. Our results show that EM fungi vary in their sensitivity to ionizing radiation. EM fungi used in this study produced melanin and reactive oxygen species scavenging enzymes such as catalase and superoxide dismutase as a response to ionizing radiation.
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Affiliation(s)
- David Kothamasi
- Biosphere Impact Studies Unit, Belgian Nuclear Research Center (SCK•CEN), Boeretang 200, 2400, Mol, Belgium; Laboratory of Soil Biology and Microbial Ecology, Department of Environmental Studies, University of Delhi, Delhi, 110 007, India.
| | - Jean Wannijn
- Biosphere Impact Studies Unit, Belgian Nuclear Research Center (SCK•CEN), Boeretang 200, 2400, Mol, Belgium
| | - May Van Hees
- Biosphere Impact Studies Unit, Belgian Nuclear Research Center (SCK•CEN), Boeretang 200, 2400, Mol, Belgium
| | - Robin Nauts
- Biosphere Impact Studies Unit, Belgian Nuclear Research Center (SCK•CEN), Boeretang 200, 2400, Mol, Belgium
| | - Axel Van Gompel
- Biosphere Impact Studies Unit, Belgian Nuclear Research Center (SCK•CEN), Boeretang 200, 2400, Mol, Belgium
| | - Nathalie Vanhoudt
- Biosphere Impact Studies Unit, Belgian Nuclear Research Center (SCK•CEN), Boeretang 200, 2400, Mol, Belgium
| | - Hildegarde Vandenhove
- Institute Environment Health and Safety, Belgian Nuclear Research Center (SCK•CEN), Boeretang 200, 2400, Mol, Belgium
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44
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Miyamoto Y, Terashima Y, Nara K. Temperature niche position and breadth of ectomycorrhizal fungi: Reduced diversity under warming predicted by a nested community structure. GLOBAL CHANGE BIOLOGY 2018; 24:5724-5737. [PMID: 30218546 DOI: 10.1111/gcb.14446] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2018] [Revised: 08/23/2018] [Accepted: 09/07/2018] [Indexed: 05/16/2023]
Abstract
Species with narrow niche breadths are assumed to be more susceptible to environmental changes than those with wide niche breadths. Although information on niche properties is necessary for predicting biological responses to environmental changes, such information is largely missing for soil microbes. In this study, we present the temperature niche positions and breadths of a functionally important group of eukaryotic soil microbes, ectomycorrhizal (EM) fungi. We compiled high-quality EM fungal sequence data from 26 forested sites in Japan (with mean annual temperatures ranging from 1.6 to 23.6°C) to create temperature niche profiles for each individual fungal species. Nested theory and a newly developed weighted-randomization null model were applied to 75 fungal operational taxonomic units (OTUs) with high occurrence records to examine potential preferences for certain temperature positions and breadths. Our analyses revealed that (a) many EM fungal OTUs were restricted to habitats with low mean annual temperatures, (b) fungal OTUs observed at colder sites exhibited narrower temperature breadths than expected by chance, (c) the composition of EM fungal OTUs exhibited a nested pattern along the temperature gradient, and (d) EM fungal richness was highest at colder sites, where the greatest degree of overlap in OTU occurrence was observed. These findings imply that future warming may limit the distribution of many EM fungal species that are currently adapted to only cold climates. This could eventually reduce EM fungal biodiversity, which is linked to forest function through symbiotic associations with trees. This study demonstrates the distribution and environmental ranges of various EM fungal species and can contribute to develop species distribution models with the aim of conserving microbes in the face of climate change.
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Affiliation(s)
- Yumiko Miyamoto
- Arctic Research Center, Hokkaido University, Kita-ku, Sapporo, Hokkaido, Japan
| | - Yoshie Terashima
- Tropical Biosphere Research Center, University of the Ryukyus, Nishihara-cho, Nakagami-gun, Okinawa, Japan
| | - Kazuhide Nara
- Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa-shi, Chiba, Japan
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45
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Liu Y, Sun Q, Li J, Lian B. Bacterial diversity among the fruit bodies of ectomycorrhizal and saprophytic fungi and their corresponding hyphosphere soils. Sci Rep 2018; 8:11672. [PMID: 30076360 PMCID: PMC6076286 DOI: 10.1038/s41598-018-30120-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 07/24/2018] [Indexed: 11/08/2022] Open
Abstract
Macro-fungi play important roles in the soil elemental cycle in terrestrial ecosystems. Many researchers have focused on the interactions between mycorrhizal fungi and host plants, whilst comparatively few studies aim to characterise the relationships between macro-fungi and bacteria in situ. In this study, we detected endophytic bacteria within fruit bodies of ectomycorrhizal and saprophytic fungi (SAF) using high-throughput sequencing technology, as well as bacterial diversity in the corresponding hyphosphere soils below the fruit bodies. Bacteria such as Helicobacter, Escherichia-Shigella, and Bacillus were found to dominate within fruit bodies, indicating that they were crucial in the development of macro-fungi. The bacterial richness in the hyphosphere soils of ectomycorrhizal fungi (EcMF) was higher than that of SAF and significant difference in the composition of bacterial communities was observed. There were more Verrucomicrobia and Bacteroides in the hyphosphere soils of EcMF, and comparatively more Actinobacteria and Chloroflexi in the hyphosphere of SAF. The results indicated that the two types of macro-fungi can enrich, and shape the bacteria compatible with their respective ecological functions. This study will be beneficial to the further understanding of interactions between macro-fungi and relevant bacteria.
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Affiliation(s)
- Yaping Liu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Qibiao Sun
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Jing Li
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Bin Lian
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China.
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46
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Patterns in Ectomycorrhizal Diversity, Community Composition, and Exploration Types in European Beech, Pine, and Spruce Forests. FORESTS 2018. [DOI: 10.3390/f9080445] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Ectomycorrhizal (EM) fungi are pivotal drivers of ecosystem functioning in temperate and boreal forests. They constitute an important pathway for plant-derived carbon into the soil and facilitate nitrogen and phosphorus acquisition. However, the mechanisms that drive ectomycorrhizal diversity and community composition are still subject to discussion. We investigated patterns in ectomycorrhizal diversity, community composition, and exploration types on root tips in Fagus sylvatica,Picea abies, and Pinus sylvestris stands across Europe. Host tree species is the most important factor shaping the ectomycorrhizal community as well as the distribution of exploration types. Moreover, abiotic factors such as soil properties, N deposition, temperature, and precipitation, were found to significantly influence EM diversity and community composition. A clear differentiation into functional traits by means of exploration types was shown for all ectomycorrhizal communities across the three analyzed tree species. Contact and short-distance exploration types were clearly significantly more abundant than cord- or rhizomorph-forming long-distance exploration types of EM fungi. Medium-distance exploration types were significantly lower in abundance than contact and short-distance types, however they were the most frequent EM taxa and constituted nearly half of the EM community. Furthermore, EM taxa exhibit distinct ecological ranges, and the type of soil exploration seemed to determine whether EM taxa have small or rather big environmental ranges.
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47
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Goud EM, Sparks JP. Leaf stable isotopes suggest shared ancestry is an important driver of functional diversity. Oecologia 2018; 187:967-975. [PMID: 29955990 DOI: 10.1007/s00442-018-4186-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2017] [Accepted: 06/05/2018] [Indexed: 11/28/2022]
Abstract
Plant physiological strategies of carbon (C) and nitrogen (N) uptake and metabolism are often regarded as outcomes of environmental selection. This is likely true, but the role of evolutionary history may also be important in shaping patterns of functional diversity. Here, we used leaf C and N stable isotope ratios (δ13C, δ15N) as integrators of physiological processes to assess the relative roles of phylogenetic history and environment in a diverse group of Ericaceae species native to North America. We found strong phylogenetic signal in both leaf δ13C and δ15N, suggesting that close relatives have similar physiological strategies. The signal of phylogeny was generally stronger than that of the local environment. However, within some specialized environments (e.g., wetlands, sandy soils), we found environmental effects and/or niche conservatism. Phylogenetic signal in δ13C appears to be most closely related to the constraints on metabolic demand and supply of C, and δ15N appears to be most strongly related to mycorrhizal associations within the family.
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Affiliation(s)
- Ellie M Goud
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14850, USA.
| | - Jed P Sparks
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14850, USA
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48
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Shireen F, Nawaz MA, Chen C, Zhang Q, Zheng Z, Sohail H, Sun J, Cao H, Huang Y, Bie Z. Boron: Functions and Approaches to Enhance Its Availability in Plants for Sustainable Agriculture. Int J Mol Sci 2018; 19:E1856. [PMID: 29937514 PMCID: PMC6073895 DOI: 10.3390/ijms19071856] [Citation(s) in RCA: 80] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2018] [Revised: 06/18/2018] [Accepted: 06/19/2018] [Indexed: 12/31/2022] Open
Abstract
Boron (B) is an essential trace element required for the physiological functioning of higher plants. B deficiency is considered as a nutritional disorder that adversely affects the metabolism and growth of plants. B is involved in the structural and functional integrity of the cell wall and membranes, ion fluxes (H⁺, K⁺, PO₄3−, Rb⁺, Ca2+) across the membranes, cell division and elongation, nitrogen and carbohydrate metabolism, sugar transport, cytoskeletal proteins, and plasmalemma-bound enzymes, nucleic acid, indoleacetic acid, polyamines, ascorbic acid, and phenol metabolism and transport. This review critically examines the functions of B in plants, deficiency symptoms, and the mechanism of B uptake and transport under limited B conditions. B deficiency can be mitigated by inorganic fertilizer supplementation, but the deleterious impact of frequent fertilizer application disrupts soil fertility and creates environmental pollution. Considering this, we have summarized the available information regarding alternative approaches, such as root structural modification, grafting, application of biostimulators (mycorrhizal fungi (MF) and rhizobacteria), and nanotechnology, that can be effectively utilized for B acquisition, leading to resource conservation. Additionally, we have discussed several new aspects, such as the combination of grafting or MF with nanotechnology, combined inoculation of arbuscular MF and rhizobacteria, melatonin application, and the use of natural and synthetic chelators, that possibly play a role in B uptake and translocation under B stress conditions.
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Affiliation(s)
- Fareeha Shireen
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Muhammad Azher Nawaz
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
- Department of Horticulture, University College of Agriculture, University of Sargodha, Sargodha, Punjab 40100, Pakistan.
| | - Chen Chen
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Qikai Zhang
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Zuhua Zheng
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Hamza Sohail
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Jingyu Sun
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Haishun Cao
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Yuan Huang
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
| | - Zhilong Bie
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University/Key Laboratory of Horticultural Plant Biology, Ministry of Education, Wuhan 430070, China.
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49
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Lett S, Dorrepaal E. Global drivers of tree seedling establishment at alpine treelines in a changing climate. Funct Ecol 2018. [DOI: 10.1111/1365-2435.13137] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Signe Lett
- Department of Ecology and Environmental ScienceClimate Impacts Research CentreUmeå University Abisko Sweden
- Terrestrial Ecology SectionDepartment of BiologyUniversity of Copenhagen Copenhagen Denmark
| | - Ellen Dorrepaal
- Department of Ecology and Environmental ScienceClimate Impacts Research CentreUmeå University Abisko Sweden
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50
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Liu XY, Koba K, Koyama LA, Hobbie SE, Weiss MS, Inagaki Y, Shaver GR, Giblin AE, Hobara S, Nadelhoffer KJ, Sommerkorn M, Rastetter EB, Kling GW, Laundre JA, Yano Y, Makabe A, Yano M, Liu CQ. Nitrate is an important nitrogen source for Arctic tundra plants. Proc Natl Acad Sci U S A 2018; 115:3398-3403. [PMID: 29540568 PMCID: PMC5879661 DOI: 10.1073/pnas.1715382115] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Plant nitrogen (N) use is a key component of the N cycle in terrestrial ecosystems. The supply of N to plants affects community species composition and ecosystem processes such as photosynthesis and carbon (C) accumulation. However, the availabilities and relative importance of different N forms to plants are not well understood. While nitrate (NO3-) is a major N form used by plants worldwide, it is discounted as a N source for Arctic tundra plants because of extremely low NO3- concentrations in Arctic tundra soils, undetectable soil nitrification, and plant-tissue NO3- that is typically below detection limits. Here we reexamine NO3- use by tundra plants using a sensitive denitrifier method to analyze plant-tissue NO3- Soil-derived NO3- was detected in tundra plant tissues, and tundra plants took up soil NO3- at comparable rates to plants from relatively NO3--rich ecosystems in other biomes. Nitrate assimilation determined by 15N enrichments of leaf NO3- relative to soil NO3- accounted for 4 to 52% (as estimated by a Bayesian isotope-mixing model) of species-specific total leaf N of Alaskan tundra plants. Our finding that in situ soil NO3- availability for tundra plants is high has important implications for Arctic ecosystems, not only in determining species compositions, but also in determining the loss of N from soils via leaching and denitrification. Plant N uptake and soil N losses can strongly influence C uptake and accumulation in tundra soils. Accordingly, this evidence of NO3- availability in tundra soils is crucial for predicting C storage in tundra.
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Affiliation(s)
- Xue-Yan Liu
- Institute of Surface-Earth System Science, Tianjin University, Tianjin 300072, China;
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo 183-8509, Japan
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550002, China
| | - Keisuke Koba
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo 183-8509, Japan;
- Center for Ecological Research, Kyoto University, Shiga 520-2113, Japan
| | - Lina A Koyama
- Department of Social Informatics, Graduate School of Informatics, Kyoto University, Kyoto 606-8501, Japan
| | - Sarah E Hobbie
- Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, MN 55108
| | - Marissa S Weiss
- Science Policy Exchange, Harvard Forest, Harvard University, Petersham, MA 01366
| | - Yoshiyuki Inagaki
- Shikoku Research Center, Forestry and Forest Products Research Institute, Kochi 780-8077, Japan
| | - Gaius R Shaver
- The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA 02543
| | - Anne E Giblin
- The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA 02543
| | - Satoru Hobara
- Department of Environmental and Symbiotic Science, Rakuno Gakuen University, Ebetsu 069-8501, Japan
| | - Knute J Nadelhoffer
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109
| | | | - Edward B Rastetter
- The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA 02543
| | - George W Kling
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109
| | - James A Laundre
- The Ecosystems Center, Marine Biological Laboratory, Woods Hole, MA 02543
| | - Yuriko Yano
- Department of Ecology, Montana State University, Bozeman, MT 59717
| | - Akiko Makabe
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo 183-8509, Japan
- Project Team for Development of New-Generation Research Protocol for Submarine Resources, Japan Agency for Marine-Earth Science and Technology, Yokosuka 237-0061, Japan
| | - Midori Yano
- Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo 183-8509, Japan
- Center for Ecological Research, Kyoto University, Shiga 520-2113, Japan
| | - Cong-Qiang Liu
- Institute of Surface-Earth System Science, Tianjin University, Tianjin 300072, China
- State Key Laboratory of Environmental Geochemistry, Institute of Geochemistry, Chinese Academy of Sciences, Guiyang 550002, China
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