Beta diversity at different spatial scales: plant communities in organic and conventional agriculture

Farm management and landscape context shape plant diversity at wetland edges in the Prairie Pothole Region of Canada

Evaluating the impacts of farming systems on biodiversity is increasingly important given the need to stem biodiversity loss, decrease fossil fuel dependency, and maintain ecosystem services benefiting farmers. We recorded woody and herbaceous plant species diversity, composition, and abundance in 43 wetland-adjacent prairie remnants beside crop fields managed using conventional, minimum tillage, organic, or perennial cover (wildlife-friendly) land management in the Prairie Pothole Region. We used a hierarchical framework to estimate diversity at regional and local scales (gamma, alpha), and how these are related through species turnover (beta diversity). We tested the expectation that gamma richness/evenness and beta diversity of all plants would be higher in remnants adjacent to perennial cover and organic fields than in conventional and minimum tillage fields. We expected the same findings for plants providing ecosystem services (bee-pollinated species) and disservices (introduced species). We predicted similar relative effects of land management on alpha diversity, but with the expectation that the benefits of organic farming would decrease with increasing grassland in surrounding landscapes. Gamma richness and evenness of all plants were highest for perennial cover, followed by minimum tillage, organic, and conventional sites. Bee-pollinated species followed a similar pattern for richness, but for evenness organic farming came second, after perennial cover sites, followed by minimum tillage and conventional. For introduced species, organic sites had the highest gamma richness and evenness. Grassland amount moderated the effect of land management type on all plants and bee-pollinated plant richness, but not as expected. The richness of organic sites increased with the amount of grassland in the surrounding landscape. Conversely, for conventional sites, richness increased as the amount of grassland in the landscape declined. Our results are consistent with the expectation that adopting wildlife-friendly land management practices can benefit biodiversity at regional and local scales, in particular the use of perennial cover to benefit plant diversity at regional scales. At more local extents, organic farming increased plant richness, but only when sufficient grassland was available in the surrounding landscape; organic farms also had the highest beta diversity for all plants and bee-pollinated plants. Maintaining native cover in agroecosystems, in addition to low-intensity farming practices, could sustain plant biodiversity and facilitate important ecosystem services.

Global taxonomic, functional, and phylogenetic diversity of bees in apple orchards

An essential prerequisite to safeguard pollinator species is characterisation of the multifaceted diversity of crop pollinators and identification of the drivers of pollinator community changes across biogeographical gradients. The extent to which intensive agriculture is associated with the homogenisation of biological communities at large spatial scales remains poorly understood. In this study, we investigated diversity drivers for 644 bee species/morphospecies in 177 commercial apple orchards across 33 countries and four global biogeographical biomes. Our findings reveal significant taxonomic dissimilarity among biogeographical zones. Interestingly, despite this dissimilarity, species from different zones share similar higher-level phylogenetic groups and similar ecological and behavioural traits (i.e. functional traits), likely due to habitat filtering caused by perennial monoculture systems managed intensively for crop production. Honey bee species dominated orchard communities, while other managed/manageable and wild species were collected in lower numbers. Moreover, the presence of herbaceous, uncultivated open areas and organic management practices were associated with increased wild bee diversity. Overall, our study sheds light on the importance of large-scale analyses contributing to the emerging fields of functional and phylogenetic diversity, which can be related to ecosystem function to promote biodiversity as a key asset in agroecosystems in the face of global change pressures.

16S metabarcoding analysis reveals the influence of organic and conventional farming practices on bacterial communities from the rhizospheric of Coffea arabica L

Coffea sp. is cultivated in many tropical countries. Brazil has always adopted intensive agricultural practices, but organic coffee farming is an alternative system based on the non-use of agrochemicals and the rational management of soils. Metabarcoding 16S analysis using next-generation sequencing has been developed to identify and compare the diversity of the Coffea arabica L. rhizospheric bacterial community in two farming areas in São Paulo, Brazil. Dourado uses conventional farming, while Ribeirão Corrente uses organic. We found broad taxonomic composition, with sequences from 24 phyla, 55 classes, 61 orders, 146 families, and 337genus. The three most abundant phyla were Proteobacteria (38.27%), Actinobacteria (15.56%), and Acidobacteria (16.10%). In organic farming, the top 3 were the family Sphingomonadaceae, order Rhizobiales, genus Nocardioides, and Gp6. The genus Gp2 and the phylum Candidatus Saccharibacteria were the most abundant OTUs exclusively present in conventional farming. In the organic farming practice, Proteobacteria, Actinobacteria, and Acidobacteria were also present among the exclusive OTUs; we also found OTUs belonging to Bacteroidetes, Firmicutes, and Verrucomicrobia. Our study indicates a positive effect of organic farming on microbial communities. Fertilization may directly affect soil microbiota, suggesting that a large and active microbial community low in functional diversity might not adapt to new climatic conditions. A diverse community could provide better resilience to environmental changes, improving the productivity of this important crop.

Organic vs. conventional: impact of cultivation treatments on the soil microbiota in the vineyard

The aim of this study was to compare the effects of two vineyard management practices on the soil and its associated microbiota. The experiments were conducted in two adjacent plots, one completely organically managed and the other conventionally managed in terms of phytosanitary treatments but fertilized with organic amendments. The chemical soil analyses were correlated to the prokaryotic and fungal communities, which were studied using the metabarcoding technique. The main difference between the two treatments was a significantly higher amount of Cu in the organic managed vineyard soil, while conventional managed soil presented higher concentration of Na and Mg and was also associated with higher pH values. Despite these differences, no significant diversities were observed on soil biodiversity and microbial composition considering alpha and beta diversity metrics. However, the percentages of some phyla analyzed individually differed significantly between the two managements. Analyzing the metabolisms of these phyla, it was discovered an increment of species correlated to soils with higher organic matter content or land not used for agricultural purposes in the organic treated soil. The findings indicate that, despite the use of copper-based phytosanitary products, there was no degradation and loss of biodiversity in the organic soil microbial population compared to conventional management with the same type of fertilization, and the observed microbial population was more similar to that of natural soils.

The spatial influences of organic farming and environmental heterogeneity on biodiversity in South Australian landscapes

The potential link between certified organic farming and biodiversity and conservation remains unexplored in Australia, despite the country having the world's largest amount of certified organic farmland and unprecedented biodiversity loss. This study modelled the spatial effects of organic farming (intensity of local farming systems), environmental heterogeneity, and urbanisation on two widely studied environmental taxa - vascular plant and bird species richness (surrogate measures of biodiversity) - in South Australia, using a unique certified organic farming postcode level dataset from 2001 to 2016 (N = 5440). The spatial Durbin error model results confirmed the positive spatial congruence of organic farming with greater vascular plant species richness, whereas only weak to no significant evidence was found for bird species richness. Landscape features (habitat heterogeneity) and green vegetation (a proxy indicator of resource availability) - rather than organic farming - appeared to be most associated with bird species richness. Both plant and bird species richness were positively associated with habitat heterogeneity (land cover diversity and elevation range), plant productivity and proportion of conservation land and water bodies. Whereas, increased anthropogenic land use for cropping and horticultural farming, soil type diversity and proximity to the coast significantly reduced species richness of both taxa. The results suggest that a multi-scale spatially refined biodiversity conservation strategy, with spatial targeting that promotes low intensive farming systems and increases landscape heterogeneity to provide quality habitat (a whole of landscape approach by incorporating private agricultural landholders), could be beneficial for biodiversity conservation.

Spiders indicate delivery of an agri-environment scheme at multiple diversity levels

Agri-environment schemes (AES) are expected to counteract the negative impacts of intensive agriculture on biodiversity. These schemes were specifically designed to target farmland biodiversity and included, for instance, ecological focus areas (EFAs). In Switzerland, in order to qualify for direct payments, farmers must manage 7% or more of their land as biodiversity promotion areas (BPAs). BPAs encompass extensively managed and low intensity hay meadows, fallows (wildflower strips), traditional orchards with high-stem trees and hedgerows. Evaluation of AES delivery for biodiversity is of crucial importance but must be performed across several years and considering the various components of species diversity to avoid incomplete or wrong conclusions. From a complex study design comprising 478 fields in three regions and sampling over 7 years with four sampling times, spider assemblages of BPA habitats were compared to corresponding conventionally managed fields. A battery of investigations was performed including alpha- and beta-diversity analysis, multivariate dispersion, indicator species and species specificity to understand what BPAs deliver for spiders in the habitat scale and farming landscape. Results showed that alpha-diversity (average number of species) was usually higher in BPA habitats than in conventionally managed fields but the species composition (beta-diversity) had more power to perceive AES impact. Furthermore, the various environmental conditions of BPAs in the farming landscape led to highly diverse spider assemblages (multivariate dispersion) emphasizing that not only the agricultural management plays a role in determining species diversity but the environmental heterogeneity. Indicator (and rare) species were mostly found in woody BPAs (hedges and high-stem tree orchards) revealing the high importance of these BPA habitats for spider conservation. At regional scale, BPA hedges contributed most to the regional diversity of spiders in grassland and mixed regions while BPA meadows and wildflower strip BPAs were first delivering in the region of arable crops. Recommendations highlight the role of the woody habitats and of the environmental heterogeneity in the farming landscape as well as of regional planning to make AES effective.

Biodiversity buffers the impact of eutrophication on ecosystem functioning of submerged macrophytes on the Yunnan-Guizhou Plateau, Southwest China

Increasing eutrophication poses a considerable threat to freshwater ecosystems, which are closely associated with human well-being. As important functional entities for freshwater ecosystems, submerged macrophytes have suffered rapidly decline with eutrophication. However, it is unclear whether and how submerged macrophytes maintain their ecological functions under increasing eutrophication stress and the underlying patterns in the process. In the current study, we conducted an extensive survey of submerged macrophytes in 49 lakes and reservoirs (67% of them are eutrophic) on the Yunnan-Guizhou Plateau of southwestern China to reveal the relationship between submerged macrophyte biodiversity and ecosystem functioning (BEF) under eutrophication stress. Results showed that submerged macrophytes species richness, functional diversity (FD), and β diversity had positive effects on ecosystem functioning, even under eutrophication. Functional diversity was a stronger predictor of community biomass than species richness and β diversity, while species richness explained higher coverage variability than FD and β diversity. This suggests that species richness was a reliable indicator when valid functional traits cannot be collected in considering specific ecological process. With increasing eutrophication in water bodies, the mechanisms underlying biodiversity-ecosystem functioning evolved from "niche complementarity" to "selection effects", as evidenced by decreased species turnover and increased nestedness. Furthermore, the relative growth rate, specific leaf area, and ramet size in trade-off of community functional composition became smaller along eutrophication while flowering duration and shoot height became longer. This study contributes to a better understanding of positive BEF in freshwater ecosystems, despite increasing anthropogenic impacts. Protecting the environment remained the effective way to protect biodiversity and corresponding ecological functions and services. It will be important to consider different facets of biodiversity on ecosystem functioning in future studies to improve effective management plans.

Varying Responses of Invertebrates to Biodynamic, Organic and Conventional Viticulture

Alternative farming methods must be deployed to mitigate the detrimental impacts of intensive agriculture on climate, biodiversity, and ecosystem services. Organic and biodynamic farming are environmental-friendly practices that progressively replace conventional agriculture. While potential biodiversity benefits of organic vs. conventional farming have been studied repeatedly, the effects of biodynamic farming on biodiversity remain ill-understood. We investigated the effects of these three main management regimes, and their interaction with ground vegetation cover, on vineyard invertebrate communities in SW Switzerland. Invertebrates were sampled three times during the vegetation season in 2016, focusing on ground-dwelling (pitfall traps) and epiphytic (sweep-netting) invertebrates, and their abundance was modelled for single, additive, and interactive influences of management and ground vegetation cover. Overall, organic and, but to a lesser degree, biodynamic vineyards provided better conditions for invertebrate abundance than conventional vineyards. On the one hand, there was a significant interaction between management and ground vegetation cover for epiphytic invertebrates with a positive linear increase in abundance in organic, a positive curvilinear relationship in biodynamic but a negative curvilinear response to vegetation cover in conventional vineyards. The abundance of ground-dwelling invertebrates was primarily affected by the management regime alone, i.e. without any interaction with ground vegetation characteristics, leading to much higher abundances in organic compared to conventional vineyards, while biodynamic did not differ from the other two regimes. We interpret the patterns as follows: organic grape production offers more suitable habitat conditions for invertebrates due to a spatially more heterogenous but also less often disturbed (compared to biodynamic management) or destroyed (compared to conventional) ground vegetation cover, in line with the predictions of the intermediate disturbance hypothesis. Biodynamic and conventional viticultural management regimes often provide a habitat that is either too mineral (conventional: ground vegetation widely eliminated) or subject to soil disturbance happening frequently through ploughing (biodynamic). We conclude that alternative farming methods do promote biodiversity in vineyard agro-ecosystems, especially so organic management.

Turnover and nestedness drive plant diversity benefits of organic farming from local to landscape scales

Biodiversity-benefits of organic farming have mostly been documented at the field scale. However, these benefits from organic farming to species diversity may not propagate to larger scales because variation in the management of different crop types and seminatural habitats in conventional farms might allow species to cope with intensive crop management. We studied flowering plant communities using a spatially replicated design in different habitats (cereal, ley and seminatural grasslands) in organic and conventional farms, distributed along a gradient in proportion of seminatural grasslands. We developed a novel method to compare the rates of species turnover within and between habitats, and between the total species pools in the two farming systems. We found that the intrahabitat species turnover did not differ between organic and conventional farms, but that organic farms had a significantly higher interhabitat turnover of flowering plant species compared with conventional ones. This was mainly driven by herbicide-sensitive species in cereal fields in organic farms, as these contained 2.5 times more species exclusive to cereal fields compared with conventional farms. The farm-scale species richness of flowering plants was higher in organic compared with conventional farms, but only in simple landscapes. At the interfarm level, we found that 36% of species were shared between the two farming systems, 37% were specific to organic farms whereas 27% were specific to conventional ones. Therefore, our results suggest that that both community nestedness and species turnover drive changes in species composition between the two farming systems. These large-scale shifts in species composition were driven by both species-specific herbicide and nitrogen sensitivity of plants. Our study demonstrates that organic farming should foster a diversity of flowering plant species from local to landscape scales, by promoting unique sets of arable-adapted species that are scarce in conventional systems. In terms of biodiversity conservation, our results call for promoting organic farming over large spatial extents, especially in simple landscapes, where such transitions would benefit plant diversity most.

Land sharing between cultivated and wild plants: urban gardens as hotspots for plant diversity in cities

Plant communities in urban gardens consist of cultivated species, including ornamentals and food crops, and wild growing species. Yet it remains unclear what significance urban gardens have for the plant diversity in cities and how the diversity of cultivated and wild plants depends on the level of urbanization. We sampled plants growing within 18 community gardens in Berlin, Germany to investigate the species diversity of cultivated and wild plants. We tested species diversity in relation to local and landscape-scale imperviousness as a measure of urbanity, and we investigated the relationship between cultivated and wild plant species within the gardens. We found that numbers of wild and cultivated plant species in gardens are high – especially of wild plant species – independent of landscape-scale imperviousness. This suggests that all community gardens, regardless of their urban contexts, can be important habitats for plant diversity along with their role in urban food provision. However, the number of all species was negatively predicted by local garden scale imperviousness, suggesting an opportunity to reduce imperviousness and create more habitats for plants at the garden scale. Finally, we found a positive relationship between the number of cultivated and wild growing species, which emphasizes that community gardens present a unique urban ecosystem where land sharing between cultivated and wild flora can transpire. As the urban agriculture movement is flourishing worldwide with gardens continuously and spontaneously arising and dissipating due to urban densification, such botanical investigations can support the argument that gardens are places for the reconciliation of plant conservation and food production.

A hillslope-scale aquifer-model to determine past agricultural legacy and future nitrate concentrations in rivers

The long-term fate of agricultural nitrate depends on rapid subsurface transfer, denitrification and storage in aquifers. Quantifying these processes remains an issue due to time varying subsurface contribution, unknown aquifer storage and heterogeneous denitrification potential. Here, we develop a parsimonious modelling approach that uses long-term discharge and river nitrate concentration time-series combined with groundwater age data determined from chlorofluorocarbons in springs and boreholes. To leverage their informational content, we use a Boussinesq-type equivalent hillslope model to capture the dynamics of aquifer flows and evolving surface and subsurface contribution to rivers. Nitrate transport was modelled with a depth-resolved high-order finite-difference method and denitrification by a first-order law. We applied the method to three heavily nitrate loaded catchments of a crystalline temperate region of France (Brittany). We found that mean water transit time ranged 10-32 years and Damköhler ratio (transit time/denitrification time) ranged 0.12-0.55, leading to limited denitrification in the aquifer (10-20%). The long-term trajectory of nitrate concentration in rivers appears determined by flows stratification in the aquifer. The results suggest that autotrophic denitrification is controlled by the accessibility of reduced minerals which occurs at the base of the aquifer where flows decrease. One interpretation is that denitrification might be an interfacial process in zones that are weathered enough to transmit flows and not too weathered to have remaining accessible reduced minerals. Consequently, denitrification would not be controlled by the total aquifer volume and related mean transit time but by the proximity of the active weathered interface with the water table. This should be confirmed by complementary studies to which the developed methodology might be further deployed.

Age-dependent shifts and spatial variation in the diet of endangered Black-faced Spoonbill (Platalea minor) chicks

The endangered Black-faced Spoonbill (Platalea minor) strictly breeds in marine environments and is threatened by the rapid loss of coastal wetlands within its breeding range. Adults with chicks are thought to gradually switch feeding sites from freshwater wetlands to coastal mudflats as the chicks’ osmoregulatory system develops. We investigated age-dependent shifts in the diet of Black-faced Spoonbill chicks at four breeding colonies with varying freshwater habitat availability by examining stable isotopes (δ¹³C, δ¹⁵N) between the tip (grown at the age of 10 days) and middle (grown at the age of 22 days) portions of their primary feathers. The δ¹³C value of the middle portions was significantly higher than that of the tips, which suggested that the ratio of marine resources increased with the growth and development of chicks. A Bayesian isotope mixing model revealed that the diet proportion of marine prey in the early-chick rearing season was slightly higher than in the late-chick rearing season at three colonies in inshore areas, although this proportion was approximately 60% even in the early chick-rearing period. In contrast, isotopic values and reconstructed diet composition suggested that chicks in an offshore colony with limited freshwater wetlands relied more heavily on freshwater diets for both chick-rearing periods (>80%). Our results suggest that the shifts in feeding sites seen in previous studies might be related to the age-dependent dietary shift of chicks, highlighting the importance of freshwater wetlands for spoonbills on offshore islands without an inflow of freshwater in nearby intertidal mudflats. These findings emphasize the importance of freshwater prey and wetlands even for the endangered marine-breeding spoonbills, even though the negative impact of salt stress remains inconclusive.

The Potential to Save Agrestal Plant Species in an Intensively Managed Agricultural Landscape through Organic Farming—A Case Study from Northern Germany

Intensive agriculture is among the main drivers of diversity decline worldwide. In Central Europe, pressures related with agriculture include habitat loss due to the consolidation of farming units, pesticide and fertilizer use, and shortened crop rotations. In recent decades, this development has resulted in a severe decline of agrestal plant communities. Organic farming has been suggested as a biodiversity friendly way of farming, as it strongly restricts the use of synthetic pesticides and fertilizers and relies on longer crop rotations. It may thus help in saving agrestal plant communities in the future. In this study, we assessed the long-term effects of three types of arable field management (conventional farming, organic farming, and bio-dynamic farming) on three farms in the federal state of Schleswig-Holstein, Northern Germany. We collected data on above-ground plant communities and seed banks and analyzed them with regards to the impact of the farming system and their position in the field using nonmetric multi-dimensional scaling (NMDS) and linear mixed effects models (LME) combined with ANOVA and Tukey contrast tests. Plants in organically or bio-dynamically managed fields differed in their composition and traits from those occurring in conventionally managed fields, i.e., they showed a preference for higher temperatures and were dominated by insect-pollinated species. While conventional farming had negative effects on vegetation and the seed bank, organic and bio-dynamic farms had neutral or slightly positive effects on both. This highlights the potential of the latter two to conserve species even in an intensively managed landscape. In addition, this may halt or even reverse the decrease in arthropod, bird, and mammal species, since agrestal plants constitute an important component of food-webs in agricultural landscapes.

Field sizes and the future of farmland biodiversity in European landscapes

Lower diversity of plant and animal farmland species are usually reported where cropland has been aggregated into larger fields, which raises prospects of curbing declines in European farmland biodiversity and associated ecosystem services by halting trends to field size increases associated to agricultural intensification, without having to set aside arable land for conservation. Here, we consider the factors underlying trade-offs between farmer income and biodiversity as mediated by field size at local and landscape scales, and how these trade-offs may be overcome. Field sizes are still increasing, facilitated by increasing farm sizes and land consolidation. Decreases in working time and fuel expenses when fields are larger, uptake of larger machinery and subsidies favoring larger farms provide incentives to manage land in larger units, putting farmland biodiversity further at risk. Yet, field size-mediated ecological-economic trade-offs are largely ignored in policy and research. We recommend internalizing the ecological effects of changes in landscape-scale field size into land consolidation scheme design, ensuring that EU Common Agricultural Policy post-2020 rewards farmers that maintain and recreate fine-grained landscapes where these are essential for farmland biodiversity targets, and reducing economic-ecological trade-offs by stimulating agricultural research and innovation for economically efficient yet biodiversity-friendly farming in fine-grained landscapes.

Impact of Intensive Farming on Soil Heavy Metal Accumulation and Biomarkers Responses of Earthworms Eisenia andrei

In this work, we propose to evaluate the effect of agriculture intensification under greenhouses on the biochemical and transcriptomic responses of the earthworms Eisenia andrei. This work was conducted on two sites in Téboulba and Sahline (Monastir governorate) and a control site in an experimental plot that is undergoing organic farming. For this purpose, the earthworms Eisenia andrei were exposed to the soils during 7 and 14 days. The physicochemical properties of the soils were analyzed. The biochemical biomarkers of metallothioneins (MTs) and malondialdehyde (MDA) accumulations were also assessed. Moreover, the gene expression level of the MTs was analyzed. The results of our study revealed a significant trace element accumulation accompanied by a high level of MDA and MT proteins. Moreover, a significant expression of the MT gene was observed in earthworms exposed to the soils from Sahline and Téboulba. Hence, this work reveals that intensive agriculture can affect the biological responses of earthworms and consequently, the soil's biofertility.

Land Sparing Can Maintain Bird Diversity in Northeastern Bangladesh

One of humanity’s most significant challenges in the process of attaining the established sustainability goals is balancing the growing human demand for food and the need to conserve biodiversity. This challenge requires appropriate land uses that are able to conserve biodiversity while ensuring ample food supply. This study compares bird species diversity and abundance in areas undergoing land sharing and land sparing in northeastern Bangladesh (West Bhanugach Reserved Forest). Birds serve as useful biologic indicators because of their presence within different trophic levels and their well-studied ecology. To survey birds, we selected a total of 66 sampling sites within land-sharing (33) and land-sparing (33) land-use areas. Between May and June 2017, we observed and recorded bird calls within a 50-m radius around each sampling site. We counted 541 individuals from 46 species of birds. The Shannon bird diversity was higher in the land-sparing sites (1.52) than in the land-sharing sites (1.23). We found approximately 30% more bird species (39 vs. 30) and 40% more individuals (318 vs. 223) in the land-sparing areas than land-sharing areas. Three bird species, Arachnothera longirostra, Micropternus brachyurus and Copsychus malabaricus, were significantly associated with the land-sparing sites. This study shows that land sharing negatively affects bird diversity, richness and abundance compared to land-sparing. The use of chemical fertilizers and the lack of food, such as insects, for birds can explain the lower diversity, richness and abundance of birds in the land-sharing areas. Although land sharing is an effective means of producing food, land sparing is the most effective land-use practice for preserving bird diversity in northeastern Bangladesh.

Weed diversity is driven by complex interplay between multi-scale dispersal and local filtering

Arable weeds are key organisms for biodiversity maintenance and ecosystem service provision in agroecosystems. Disentangling the drivers of weed diversity is critical to counteract the global decline of farmland biodiversity. Even if distinct scale-dependent processes were alternatively proposed, no general framework unifying the multi-scale drivers of weed dynamics has yet emerged. Here, we investigate the joint effects of field- and landscape-scale processes on weed assemblages in 444 arable fields. First, field margins sheltered greater weed diversity than field core, evidencing their role as biodiversity refugia. Second, community similarity between field core and margin decreased with the distance to margin, highlighting a major role of local dispersal. Third, weed diversity at field margins increased with organic field cover in the landscape, pointing out massive regional dispersal. Fourth, while both local and landscape dispersal explained up to 41% of field core weed diversity, crop type strongly modulated their strength, depicting an intense filtering effect by agricultural management. This study sheds new light on the complex multi-scale interactions shaping weed diversity, field margins playing a key role by strengthening regional dispersal and sustaining local dispersal. Land-sharing strategies improving habitat heterogeneity both locally and regionally should largely promote agroecosystem multifunctionality and sustainability.

Surveying the arable plant diversity of conventionally managed farmland: a comparison of methods

Agricultural intensification has led to drastic population declines in Europe's arable plant vegetation, and continuous monitoring is a prerequisite for assessing measures to increase and conserve remnant populations of endangered arable plant species. Unfortunately, strong variation in plot sizes and in-field locations makes comparison of current arable plant monitoring approaches difficult. This study compares different relevé approaches in conventionally managed arable fields in Northwest German farmland with respect to plant species detection success and time expenditure. We compared species detection rate and expenditure of time of six different relevé types in 45 conventionally managed arable fields (each 15 fields of wheat, maize, and rapeseed): field "Interior" plots (50 × 2 m); field edge plots: "Edge_30" (30 × 2 m), "Edge_50" (50 × 2 m), and "Edge_500" (500 × 1 m); "Subplots" (four dispersed plots of 5 × 1 m); and "Corner" plots (50 × 2 m). To determine species detection rate, the species richness recorded with a survey method was related to the field's total plant species number as estimated from a survey of the entire field edge zone. With a species detection rate of 8.3% (median), interior plots were inadequate for characterizing the field's arable plant vegetation. Edge_500 plots yielded the highest proportion of the field's arable plant species pool (75.6%, including taxa of conservation value), followed by "Corner" plots (45.8%) and "Sublots" (32.6%). Edge_50 and Edge_30 plots detected less than 25% of the field's species pool. The average time needed for a relevé was 20 min in Edge500 plots and 5-11 min in the other plot types. We suggest implementing Edge_500 plots as a standard monitoring approach in conventionally managed farmland due to its favorable ratio of detection success to expenditure of time. Our findings should be compared to methodological studies conducted in other regions, in different farmland management systems, and in landscapes of variable complexities.

Diversity of Understory Communities in Boreal Forests: Influences of Forest Type, Latitude, and Spatial Scale

Understory vegetation hosts high biodiversity and plays a critical role in the ecosystem processes of boreal forests. However, the drivers of understory plant diversity in this high-latitude ecosystem remain uncertain. To investigate the influences of forest type and latitude on understory beta diversity at different scales, we quantified the species composition of Vaccinium uliginosum Linnaeus communities under broadleaf and coniferous forests at two latitudes at the quadrat (2 × 2 m) and plot (10 × 10 m) scales in the Greater Xing’an Mountains, NE China. At the quadrat scale, species alpha diversity of V. uliginosum communities was higher in broadleaf forests than that in coniferous forests at both latitudes. The differences in species beta diversity (the Sørensen’s dissimilarity) in two forest types depended on the latitude: beta diversity in broadleaf forests was higher than that in coniferous forests at the higher latitude, while beta diversity in coniferous forests was higher at the lower latitude. At the plot scale, alpha and beta diversity of V. uliginosum communities decreased from broadleaf forests to coniferous forests at the higher latitude, and they did not show significant differences between forest types at the lower latitude. These results indicate the interactive effects of forest type and latitude on beta diversity of understory vegetation. Moreover, the influences of forest type and latitude on species alpha and beta diversity were different across the two spatial scales, suggesting that the assembly mechanisms underlying species diversity may be different at different scales. Understanding the maintenance of understory vegetation diversity will benefit the conservation and management of boreal forests.

Local and regional drivers of turnover and nestedness components of species and functional beta diversity in lake macrophyte communities in China

Beta diversity describes the variation in species composition between sites and is often influenced by both local and regional processes. Partitioning beta diversity into turnover (species replacement between sites) and nestedness (richness difference between sites) components may enhance our understanding of the mechanisms behind the local and regional drivers determining species composition across spatial scales. We sampled macrophyte communities in 24 lakes in two regions (Yangtze River basin and Yunnan-Guizhou plateau) of China covering broad climate and nutrient gradients. Based on both species and functional approaches, we calculated multiple-site beta diversity using the Sørensen dissimilarity index and partitioned it into turnover and nestedness coefficients crossed with two nested spatial scales: among depths within transects (transect scale) and among transects within lakes (lake scale). The overall species beta diversity and functional beta diversity (i.e. Sørensen coefficient) were significantly lower and thus more homogeneous at lake scale. Across spatial scales, species beta diversity was mainly explained by turnover patterns (56-61%) and functional beta diversity primarily by nestedness patterns (58-65%). Both local and regional drivers contributed to structuring species and functional beta diversity patterns, largely through changes in species turnover and functional nestedness, respectively. Overall, we observed a significant increase in species beta diversity and its turnover component while a decreasing trend in functional beta diversity and its nestedness component at high altitude. Our results further emphasized that the species beta diversity and its turnover component decreased at high total phosphorus concentration (TP) across the two spatial scales, while the functional beta diversity and its nestedness component decreased at high TP at the transect scale. We conclude that understanding of the relative role of local and regional drivers in determining macrophyte diversity patterns may help managers to select the most appropriate conservation strategies for preservation of biodiversity varying with the scale in focus.

Analysis of native vegetation for detailed characterization of a soil contaminated by tannery waste

The risks for human health and the ecosystem due to potentially toxic elements (PTEs) were investigated in a farmland classified as potentially contaminated by Cr and Zn by analysing native vegetation and relative rhizo-soils. Rhizo-soils of different plant species were found to be enriched by Cr and Zn as well as by elements omitted from official environmental characterization, namely Cd, As and Pb. The ecological risk index (ERI) had a mean value of 510, indicating high to "very high" risk in different habitats. ERI above the very high risk threshold characterized the rhizo-soils of Lolium perenne, Erigeron sumatrensis, Oloptum thomasii and Amaranthus retroflexus. Two of these plant species (E. sumatrensis and A. retroflexus) are exotic in Italy and accumulated Cd in the shoots above the EU threshold for forage, suggesting a potential risk of Cd transfer to the food chain. Hence, this element was found to contribute most to the ERI. Cynodon dactylon was recognized as the most suitable plant species for the phytostabilization of the contaminated site, as it showed the highest bioavailable Cd accumulation in roots coupled with the highest frequency and soil-cover capacity during spring-summer, when the risk of soil resuspension is generally more intense.

The contribution of spatial mass effects to plant diversity in arable fields

In arable fields, plant species richness consistently increases at field edges. This potentially makes the field edge an important habitat for the conservation of the ruderal arable flora (or 'weeds') and the invertebrates and birds it supports. Increased diversity and abundance of weeds in crop edges could be owing to either a reduction in agricultural inputs towards the field edge and/or spatial mass effects associated with dispersal from the surrounding landscape.We contend that the diversity of weed species in an arable field is a combination of resident species, that can persist under the intense selection pressure of regular cultivation and agrochemical inputs (typically more ruderal species), and transient species that rely on regular dispersal from neighbouring habitats (characterised by a more 'competitive' ecological strategy).We analysed a large dataset of conventionally managed arable fields in the UK to study the effect of the immediate landscape on in-field plant diversity and abundance and to quantify the contribution of spatial mass effects to plant diversity in arable fields in the context of the ecological strategy of the resulting community.We demonstrated that the decline in diversity with distance into an arable field is highly dependent on the immediate landscape, indicating the important role of spatial mass effects in explaining the increased species richness at field edges in conventionally managed fields.We observed an increase in the proportion of typical arable weeds away from the field edge towards the centre. This increase was dependent on the immediate landscape and was associated with a higher proportion of more competitive species, with a lower fidelity to arable habitats, at the field edge. Synthesis and applications. Conserving the ruderal arable plant community, and the invertebrates and birds that use it as a resource, in conventionally managed arable fields typically relies on the targeted reduction of fertilisers and herbicides in so-called 'conservation headlands'. The success of these options will depend on the neighbouring habitat and boundary. They should be placed along margins where the potential for ingress of competitive species, that may become dominant in the absence of herbicides, is limited. This will enhance ecosystem services delivered by the ruderal flora and reduce the risk of competitive species occurring in the crop.

Simulating eutrophication in a metacommunity landscape: an aquatic model ecosystem

Aquatic habitats are often characterized by both high diversity and the threat of multiple anthropogenic stressors. Our research deals with temporal and spatial aspects of two of the main threats for biodiversity, namely eutrophication and fragmentation. It is known that pulsed nutrient addition creates temporal differences in environmental conditions, promoting higher diversity by preventing the best competitor from dominating. Furthermore, a metacommunity landscape with intermediate connectivity increases autotrophs' diversity and stability. However, it is yet unclear if these two factors are additive in increasing diversity and if the effects extend to the consumer level. With the goal of understanding how eutrophication impacts biodiversity in a metacommunity landscape, we hypothesized that pulsed nutrient addition will increase diversity among both autotrophs and heterotrophs, and this effect will be even greater in a metacommunity landscape. We simulated eutrophication and fragmentation in a microcosm experiment using phytoplankton as primary producers and microzooplankton as grazers. Four treatment combinations were tested including two different landscapes (metacommunity and isolated community) and two forms of nutrient supply (pulsed and continuous): metacommunity/continuous nutrient addition (MC); metacommunity/pulsed nutrient addition (MP); isolated community/continuous nutrient addition (IC); isolated community/pulsed nutrient addition (IP). As expected, pulsed nutrient addition had a persistent positive effect on phytoplankton diversity, with a weaker influence of landscape type. In contrast, the grazer community strongly benefited from a metacommunity landscape, with less significance of pulsed or continuous nutrient addition. Overall, the metacommunity landscape with pulsed nutrient supply supported higher diversity of primary producers and grazers.

Patterns of plant diversity loss and species turnover resulting from land abandonment and intensification in semi-natural grasslands

Land-use changes cause biodiversity loss in semi-natural ecosystems worldwide. Biotic homogenization has led to biodiversity loss, mainly through declines in species composition turnover. Elucidating patterns of turnover in species composition could enhance our understanding of how anthropogenic activities affect community assembly. Here, we focused on whether the decreasing patterns in plant diversity and turnover of species composition resulting from land-use change vary in two regions. We estimated the species diversity and composition of semi-natural grasslands surrounding paddy fields in satoyama landscapes. We examined the differences in species diversity and composition across three land-use types (abandoned, traditional, and intensified) in two regions (Hyogo and Niigata Prefectures, Japan), which were characterized by different climatic conditions. We then assessed alpha-, beta-, and gamma-diversity to compare the patterns of diversity losses in the two regions as a result of land-use changes. In each region, gamma-diversity was consistently higher in the traditional sites compared to abandoned or intensified sites. The analyses revealed that most of the beta-diversity in traditional sites differed significantly from those of abandoned and intensified sites in both regions. However, the beta-diversity of total and perennial species did not differ between traditional and abandoned sites in the Hyogo region. We noted that the beta-diversity of total and perennial species in intensified sites was much lower than that in the traditional sites of the Niigata region. Overall, the patterns of alpha- and gamma-diversity loss were similar in both study regions. Although the biotic homogenization was caused by intensified land-use in the Niigata region, this hypothesis did not completely explain the loss of biodiversity in the abandoned sites in the Hyogo region. The present study contributes to the growing body of work investigating changes in biodiversity as a result of both biotic homogenization and differentiation in semi-natural ecosystems. Conservationists and policy makers should focus on patterns of species composition responded to land-use changes that continue to increase worldwide.

Similar alpha and beta diversity changes in tropical ant communities, comparing savannas and rainforests in Brazil and Indonesia

Local biodiversity can be expected to be similar worldwide if environmental conditions are similar. Here, we hypothesize that tropical ant communities with different types of regional species pools but at similar habitat types in Brazil and Indonesia show similar diversity patterns at multiple spatial scales, when comparing (1) the relative contribution of alpha and beta diversity to gamma diversity; (2) the number of distinct communities (community differentiation); and (3) the drivers of β-diversity (species replacement or species loss/gain) at each spatial scale. In both countries, rainforests and savannas (biome scale) were represented by three landscapes (landscape scale), each with four transects (site scale) and each transect with 10 pitfall traps (local scale). At the local scale, α-diversity was higher and β-diversity lower than expected from null models. Hence, we observed a high coexistence of species across biomes. The replacement of species seemed the most important factor for β-diversity among sites and among landscapes across biomes. Species sorting, landscape-moderated species distribution and neutral drift are potential mechanisms for the high β-diversity among sites within landscapes. At the biome scale, different evolutionary histories produced great differences in ant community composition, so the replacement of species is, at this scale, the most important driver of beta diversity. According to these key findings, we conclude that distinct regional ant species pools from similar tropical habitat types are similarly constrained across several spatial scales, regardless of the continent considered.

Partitioning the plant diversity of semi-natural grasslands across Japan

Effective conservation of global species diversity requires a clear understanding of spatial scales that support overall diversity across broad scales. Abandonment of semi-natural grasslands has increased their fragmentation and decreased their areal extent. We quantified diversity patterns of plant communities in Japan across hierarchical scales to facilitate the development of an effective nationwide strategy for conserving species diversity in remnant semi-natural grasslands. We applied additive partitioning of plant species diversity, using a nested hierarchical design at three spatial scales (quadrat, grassland, and western and eastern regions of Japan) for three groups of plant species (all species, grassland species and national Red Listed species). We consistently found lower proportions of among-quadrats diversity, and higher proportions of among-grasslands diversity and between-regions diversity in the overall diversity of the entire species complement than would be expected by chance. The high contribution of among-grasslands diversity to overall diversity suggests that each grassland had a unique species content. The second-ranking contributor to overall diversity differed between grassland species and Red Listed species: the second-ranking contributor for grassland species was diversity at the among-quadrats scale but the second-ranking contributor for all species and for Red Listed species was diversity at the between-regions scale. Thus, effective conservation of diversity of the entire species complement in remnant semi-natural grasslands requires preservation of beta diversity in individual grasslands. Our findings highlight the importance of strengthening local preservation and restoration activities within each grassland, and of nationwide strategies for conserving Red Listed species in remnant semi-natural grassland communities.

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System

Organic farming system and sustainable management of soil pathogens aim at reducing the use of agricultural chemicals in order to improve ecosystem health. Despite the essential role of microbial communities in agro-ecosystems, we still have limited understanding of the complex response of microbial diversity and composition to organic and conventional farming systems and to alternative methods for controlling plant pathogens. In this study we assessed the microbial community structure, diversity and richness using 16S rRNA gene next generation sequences and report that conventional and organic farming systems had major influence on soil microbial diversity and community composition while the effects of the soil health treatments (sustainable alternatives for chemical control) in both farming systems were of smaller magnitude. Organically managed system increased taxonomic and phylogenetic richness, diversity and heterogeneity of the soil microbiota when compared with conventional farming system. The composition of microbial communities, but not the diversity nor heterogeneity, were altered by soil health treatments. Soil health treatments exhibited an overrepresentation of specific microbial taxa which are known to be involved in soil suppressiveness to pathogens (plant-parasitic nematodes and soil-borne fungi). Our results provide a comprehensive survey on the response of microbial communities to different agricultural systems and to soil treatments for controlling plant pathogens and give novel insights to improve the sustainability of agro-ecosystems by means of beneficial microorganisms.

Irrigation and Maize Cultivation Erode Plant Diversity Within Crops in Mediterranean Dry Cereal Agro-Ecosystems

The intensification of agriculture has increased production at the cost of environment and biodiversity worldwide. To increase crop yield in dry cereal systems, vast farmland areas of high conservation value are being converted into irrigation, especially in Mediterranean countries. We analyze the effect of irrigation-driven changes on the farm biota by comparing species diversity, community composition, and species traits of arable plants within crop fields from two contrasting farming systems (dry and irrigated) in Spain. We sampled plant species within 80 fields of dry wheat, irrigated wheat, and maize (only cultivated under irrigation). Wheat crops held higher landscape and per field species richness, and beta diversity than maize. Within the same type of crop, irrigated wheat hosted lower plant diversity than dry wheat at both field and landscape scales. Floristic composition differed between crop types, with higher frequencies of perennials, cosmopolitan, exotic, wind-pollinated and C4 species in maize. Our results suggest that irrigation projects, that transform large areas of dry cereal agro-ecosystems into irrigated crop systems dominated by maize, erode plant diversity. An adequate planning on the type and proportion of crops used in the irrigated agro-ecosystems is needed in order to balance agriculture production and biodiversity conservation.

Organic fields sustain weed metacommunity dynamics in farmland landscapes

Agro-ecosystems constitute essential habitat for many organisms. Agricultural intensification, however, has caused a strong decline of farmland biodiversity. Organic farming (OF) is often presented as a more biodiversity-friendly practice, but the generality of the beneficial effects of OF is debated as the effects appear often species- and context-dependent, and current research has highlighted the need to quantify the relative effects of local- and landscape-scale management on farmland biodiversity. Yet very few studies have investigated the landscape-level effects of OF; that is to say, how the biodiversity of a field is affected by the presence or density of organically farmed fields in the surrounding landscape. We addressed this issue using the metacommunity framework, with weed species richness in winter wheat within an intensively farmed landscape in France as model system. Controlling for the effects of local and landscape structure, we showed that OF leads to higher local weed diversity and that the presence of OF in the landscape is associated with higher local weed biodiversity also for conventionally farmed fields, and may reach a similar biodiversity level to organic fields in field margins. Based on these results, we derive indications for improving the sustainable management of farming systems.

On-farm habitat restoration counters biotic homogenization in intensively managed agriculture

To slow the rate of global species loss, it is imperative to understand how to restore and maintain native biodiversity in agricultural landscapes. Currently, agriculture is associated with lower spatial heterogeneity and turnover in community composition (β-diversity). While some techniques are known to enhance α-diversity, it is unclear whether habitat restoration can re-establish β-diversity. Using a long-term pollinator dataset, comprising ∼9,800 specimens collected from the intensively managed agricultural landscape of the Central Valley of California, we show that on-farm habitat restoration in the form of native plant 'hedgerows', when replicated across a landscape, can boost β-diversity by approximately 14% relative to unrestored field margins, to levels similar to some natural communities. Hedgerows restore β-diversity by promoting the assembly of phenotypically diverse communities. Intensively managed agriculture imposes a strong ecological filter that negatively affects several important dimensions of community trait diversity, distribution, and uniqueness. However, by helping to restore phenotypically diverse pollinator communities, small-scale restorations such as hedgerows provide a valuable tool for conserving biodiversity and promoting ecosystem services.

The beta-diversity of species interactions: Untangling the drivers of geographic variation in plant-pollinator diversity and function across scales

PREMISE OF THE STUDY

Geographic patterns of biodiversity have long inspired interest in processes that shape the assembly, diversity, and dynamics of communities at different spatial scales. To study mechanisms of community assembly, ecologists often compare spatial variation in community composition (beta-diversity) across environmental and spatial gradients. These same patterns inspired evolutionary biologists to investigate how micro- and macro-evolutionary processes create gradients in biodiversity. Central to these perspectives are species interactions, which contribute to community assembly and geographic variation in evolutionary processes. However, studies of beta-diversity have predominantly focused on single trophic levels, resulting in gaps in our understanding of variation in species-interaction networks (interaction beta-diversity), especially at scales most relevant to evolutionary studies of geographic variation.

METHODS

We outline two challenges and their consequences in scaling-up studies of interaction beta-diversity from local to biogeographic scales using plant-pollinator interactions as a model system in ecology, evolution, and conservation.

KEY RESULTS

First, we highlight how variation in regional species pools may contribute to variation in interaction beta-diversity among biogeographic regions with dissimilar evolutionary history. Second, we highlight how pollinator behavior (host-switching) links ecological networks to geographic patterns of plant-pollinator interactions and evolutionary processes. Third, we outline key unanswered questions regarding the role of geographic variation in plant-pollinator interactions for conservation and ecosystem services (pollination) in changing environments.

CONCLUSIONS

We conclude that the largest advances in the burgeoning field of interaction beta-diversity will come from studies that integrate frameworks in ecology, evolution, and conservation to understand the causes and consequences of interaction beta-diversity across scales.

Biodiversity conservation in agriculture requires a multi-scale approach

Biodiversity loss--one of the most prominent forms of modern environmental change--has been heavily driven by terrestrial habitat loss and, in particular, the spread and intensification of agriculture. Expanding agricultural land-use has led to the search for strong conservation strategies, with some suggesting that biodiversity conservation in agriculture is best maximized by reducing local management intensity, such as fertilizer and pesticide application. Others highlight the importance of landscape-level approaches that incorporate natural or semi-natural areas in landscapes surrounding farms. Here, we show that both of these practices are valuable to the conservation of biodiversity, and that either local or landscape factors can be most crucial to conservation planning depending on which types of organisms one wishes to save. We performed a quantitative review of 266 observations taken from 31 studies that compared the impacts of localized (within farm) management strategies and landscape complexity (around farms) on the richness and abundance of plant, invertebrate and vertebrate species in agro-ecosystems. While both factors significantly impacted species richness, the richness of sessile plants increased with less-intensive local management, but did not significantly respond to landscape complexity. By contrast, the richness of mobile vertebrates increased with landscape complexity, but did not significantly increase with less-intensive local management. Invertebrate richness and abundance responded to both factors. Our analyses point to clear differences in how various groups of organisms respond to differing scales of management, and suggest that preservation of multiple taxonomic groups will require multiple scales of conservation.

Testing scale-dependent effects of seminatural habitats on farmland biodiversity

The effectiveness of conservation interventions for maximizing biodiversity benefits from agri-environment schemes (AESs) is expected to depend on the quantity of seminatural habitats in the surrounding landscape. To verify this hypothesis, we developed a hierarchical sampling design to assess the effects of field boundary type and cover of seminatural habitats in the landscape at two nested spatial scales. We sampled three types of field boundaries with increasing structural complexity (grass margin, simple hedgerow, complex hedgerow) in paired landscapes with the presence or absence of seminatural habitats (radius 0.5 km), that in turn, were nested within 15 areas with different proportions of seminatural habitats at a larger spatial scale (10 X 10 km). Overall, 90 field boundaries were sampled across a Mediterranean'region (northeastern Italy). We considered species richness response across three different taxonomic groups: vascular plants, butterflies, and tachinid flies. No interactions between type of field boundary and surrounding landscape were found at either 0.5 and 10 km, indicating that the quality of field boundary had the same effect irrespective of the cover of seminatural habitats. At the local scale, extended-width grass margins yielded higher plant species richness, while hedgerows yielded higher species richness of butterflies and tachinids. At the 0.5-km landscape scale, the effect of the proportion of seminatural habitats was neutral for plants and tachinids, while butterflies were positively related to the proportion of forest. At the 10-km landscape scale, only butterflies responded positively to the proportion of seminatural habitats. Our study confirmed the importance of testing multiple scales when considering species from different taxa and with different mobility. We showed that the quality of field boundaries at the local scale was an important factor in enhancing farmland biodiversity. For butterflies, AESs should focus particular attention on preservation'of forest patches in agricultural landscapes within 0.5 kin, as well as the conservation of seminatural habitats at a wider landscape scale.

Measuring β-diversity with species abundance data

In 2003, 24 presence–absence β‐diversity metrics were reviewed and a number of trade‐offs and redundancies identified. We present a parallel investigation into the performance of abundance‐based metrics of β‐diversity.

β‐diversity is a multi‐faceted concept, central to spatial ecology. There are multiple metrics available to quantify it: the choice of metric is an important decision.

We test 16 conceptual properties and two sampling properties of a β‐diversity metric: metrics should be 1) independent of α‐diversity and 2) cumulative along a gradient of species turnover. Similarity should be 3) probabilistic when assemblages are independently and identically distributed. Metrics should have 4) a minimum of zero and increase monotonically with the degree of 5) species turnover, 6) decoupling of species ranks and 7) evenness differences. However, complete species turnover should always generate greater values of β than extreme 8) rank shifts or 9) evenness differences. Metrics should 10) have a fixed upper limit, 11) symmetry (β_A,B = β_B,A), 12) double‐zero asymmetry for double absences and double presences and 13) not decrease in a series of nested assemblages. Additionally, metrics should be independent of 14) species replication 15) the units of abundance and 16) differences in total abundance between sampling units. When samples are used to infer β‐diversity, metrics should be 1) independent of sample sizes and 2) independent of unequal sample sizes. We test 29 metrics for these properties and five ‘personality’ properties.

Thirteen metrics were outperformed or equalled across all conceptual and sampling properties. Differences in sensitivity to species’ abundance lead to a performance trade‐off between sample size bias and the ability to detect turnover among rare species. In general, abundance‐based metrics are substantially less biased in the face of undersampling, although the presence–absence metric, β_sim, performed well overall. Only β_{Baselga R turn}, β_{Baselga B‐C turn} and β_sim measured purely species turnover and were independent of nestedness. Among the other metrics, sensitivity to nestedness varied >4‐fold.

Our results indicate large amounts of redundancy among existing β‐diversity metrics, whilst the estimation of unseen shared and unshared species is lacking and should be addressed in the design of new abundance‐based metrics.

Woody species diversity in forest plantations in a mountainous region of Beijing, China: effects of sampling scale and species selection

The role of forest plantations in biodiversity conservation has gained more attention in recent years. However, most work on evaluating the diversity of forest plantations focuses only on one spatial scale; thus, we examined the effects of sampling scale on diversity in forest plantations. We designed a hierarchical sampling strategy to collect data on woody species diversity in planted pine (Pinus tabuliformis Carr.), planted larch (Larix principis-rupprechtii Mayr.), and natural secondary deciduous broadleaf forests in a mountainous region of Beijing, China. Additive diversity partition analysis showed that, compared to natural forests, the planted pine forests had a different woody species diversity partitioning pattern at multi-scales (except the Simpson diversity in the regeneration layer), while the larch plantations did not show multi-scale diversity partitioning patterns that were obviously different from those in the natural secondary broadleaf forest. Compare to the natural secondary broadleaf forests, the effects of planted pine forests on woody species diversity are dependent on the sampling scale and layers selected for analysis. Diversity in the planted larch forest, however, was not significantly different from that in the natural forest for all diversity components at all sampling levels. Our work demonstrated that the species selected for afforestation and the sampling scales selected for data analysis alter the conclusions on the levels of diversity supported by plantations. We suggest that a wide range of scales should be considered in the evaluation of the role of forest plantations on biodiversity conservation.