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For: Berry MA, White JD, Davis TW, Jain S, Johengen TH, Dick GJ, Sarnelle O, Denef VJ. Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes. Front Microbiol 2017;8:365. [PMID: 28337183 PMCID: PMC5341627 DOI: 10.3389/fmicb.2017.00365] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 02/21/2017] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Kiledal EA, Reitz LA, Kuiper EQ, Evans J, Siddiqui R, Denef VJ, Dick GJ. Comparative genomic analysis of Microcystis strain diversity using conserved marker genes. HARMFUL ALGAE 2024;132:102580. [PMID: 38331539 DOI: 10.1016/j.hal.2024.102580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 01/08/2024] [Accepted: 01/09/2024] [Indexed: 02/10/2024]
2
Lefler FW, Barbosa M, Zimba PV, Smyth AR, Berthold DE, Laughinghouse HD. Spatiotemporal diversity and community structure of cyanobacteria and associated bacteria in the large shallow subtropical Lake Okeechobee (Florida, United States). Front Microbiol 2023;14:1219261. [PMID: 37711696 PMCID: PMC10499181 DOI: 10.3389/fmicb.2023.1219261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 08/14/2023] [Indexed: 09/16/2023]  Open
3
Dahal N, Glyshaw P, Carter G, Vanderploeg HA, Denef VJ. Impacts of an invasive filter-feeder on bacterial biodiversity are context dependent. FEMS Microbiol Ecol 2022;99:6884136. [PMID: 36482091 DOI: 10.1093/femsec/fiac149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 11/22/2022] [Accepted: 12/06/2022] [Indexed: 12/13/2022]  Open
4
Uptake of Phytoplankton-Derived Carbon and Cobalamins by Novel Acidobacteria Genera in Microcystis Blooms Inferred from Metagenomic and Metatranscriptomic Evidence. Appl Environ Microbiol 2022;88:e0180321. [PMID: 35862730 PMCID: PMC9317899 DOI: 10.1128/aem.01803-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
5
Yancey CE, Smith DJ, Den Uyl PA, Mohamed OG, Yu F, Ruberg SA, Chaffin JD, Goodwin KD, Tripathi A, Sherman DH, Dick GJ. Metagenomic and Metatranscriptomic Insights into Population Diversity of Microcystis Blooms: Spatial and Temporal Dynamics of mcy Genotypes, Including a Partial Operon That Can Be Abundant and Expressed. Appl Environ Microbiol 2022;88:e0246421. [PMID: 35438519 PMCID: PMC9088275 DOI: 10.1128/aem.02464-21] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 03/14/2022] [Indexed: 11/29/2022]  Open
6
MacKeigan PW, Garner RE, Monchamp MÈ, Walsh DA, Onana VE, Kraemer SA, Pick FR, Beisner BE, Agbeti MD, da Costa NB, Shapiro BJ, Gregory-Eaves I. Comparing microscopy and DNA metabarcoding techniques for identifying cyanobacteria assemblages across hundreds of lakes. HARMFUL ALGAE 2022;113:102187. [PMID: 35287928 DOI: 10.1016/j.hal.2022.102187] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 01/11/2022] [Accepted: 01/19/2022] [Indexed: 06/14/2023]
7
Aguilar P, Vila I, Sommaruga R. Bacterioplankton Zonation Does Exist in High Elevation, Polymictic Lakes. Front Microbiol 2022;13:764566. [PMID: 35250918 PMCID: PMC8891803 DOI: 10.3389/fmicb.2022.764566] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 01/25/2022] [Indexed: 01/04/2023]  Open
8
Kerrigan Z, D’Hondt S. Patterns of Relative Bacterial Richness and Community Composition in Seawater and Marine Sediment Are Robust for Both Operational Taxonomic Units and Amplicon Sequence Variants. Front Microbiol 2022;13:796758. [PMID: 35197949 PMCID: PMC8859096 DOI: 10.3389/fmicb.2022.796758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Accepted: 01/10/2022] [Indexed: 11/23/2022]  Open
9
Sarver J, Schultz E, Apigo A, Gernandt DS, Salas-Lizana R, Oono R. Deep sequencing across multiple host species tests pine-endophyte specificity. AMERICAN JOURNAL OF BOTANY 2022;109:83-98. [PMID: 34695224 DOI: 10.1002/ajb2.1792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Revised: 10/04/2021] [Accepted: 10/05/2021] [Indexed: 06/13/2023]
10
Botta C, Coisson JD, Ferrocino I, Colasanto A, Pessione A, Cocolin L, Arlorio M, Rantsiou K. Impact of Electrolyzed Water on the Microbial Spoilage Profile of Piedmontese Steak Tartare. Microbiol Spectr 2021;9:e0175121. [PMID: 34787437 PMCID: PMC8597643 DOI: 10.1128/spectrum.01751-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 10/19/2021] [Indexed: 01/04/2023]  Open
11
Genotyping and multivariate regression trees reveal ecological diversification within the Microcystis aeruginosa complex along a wide environmental gradient. Appl Environ Microbiol 2021;88:e0147521. [PMID: 34818109 DOI: 10.1128/aem.01475-21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
12
Srinivasan VN, Li G, Wang D, Tooker NB, Dai Z, Onnis-Hayden A, Bott C, Dombrowski P, Schauer P, Pinto A, Gu AZ. Oligotyping and metagenomics reveal distinct Candidatus Accumulibacter communities in side-stream versus conventional full-scale enhanced biological phosphorus removal (EBPR) systems. WATER RESEARCH 2021;206:117725. [PMID: 34653799 DOI: 10.1016/j.watres.2021.117725] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 09/23/2021] [Accepted: 09/24/2021] [Indexed: 06/13/2023]
13
Sound JK, Peters A, Bellamy-Carter J, Rad-Menéndez C, MacKechnie K, Green DH, Leney AC. Rapid Cyanobacteria Species Identification with High Sensitivity Using Native Mass Spectrometry. Anal Chem 2021;93:14293-14299. [PMID: 34657414 PMCID: PMC8552214 DOI: 10.1021/acs.analchem.1c03412] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
14
Smith DJ, Tan JY, Powers MA, Lin XN, Davis TW, Dick GJ. Individual Microcystis colonies harbour distinct bacterial communities that differ by Microcystis oligotype and with time. Environ Microbiol 2021;23:3020-3036. [PMID: 33830633 DOI: 10.1111/1462-2920.15514] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Revised: 03/11/2021] [Accepted: 04/06/2021] [Indexed: 12/31/2022]
15
Piombo E, Abdelfattah A, Droby S, Wisniewski M, Spadaro D, Schena L. Metagenomics Approaches for the Detection and Surveillance of Emerging and Recurrent Plant Pathogens. Microorganisms 2021;9:188. [PMID: 33467169 PMCID: PMC7830299 DOI: 10.3390/microorganisms9010188] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 01/09/2021] [Accepted: 01/12/2021] [Indexed: 12/28/2022]  Open
16
Matson PG, Boyer GL, Bridgeman TB, Bullerjahn GS, Kane DD, McKay RML, McKindles KM, Raymond HA, Snyder BK, Stumpf RP, Davis TW. Physical drivers facilitating a toxigenic cyanobacterial bloom in a major Great Lakes tributary. LIMNOLOGY AND OCEANOGRAPHY 2020;65:2866-2882. [PMID: 33707786 PMCID: PMC7942401 DOI: 10.1002/lno.11558] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
17
Botta C, Ferrocino I, Pessione A, Cocolin L, Rantsiou K. Spatiotemporal Distribution of the Environmental Microbiota in Food Processing Plants as Impacted by Cleaning and Sanitizing Procedures: the Case of Slaughterhouses and Gaseous Ozone. Appl Environ Microbiol 2020;86:e01861-20. [PMID: 32978124 PMCID: PMC7657643 DOI: 10.1128/aem.01861-20] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 09/15/2020] [Indexed: 12/16/2022]  Open
18
Gicquelais RE, Bohnert ASB, Thomas L, Foxman B. Opioid agonist and antagonist use and the gut microbiota: associations among people in addiction treatment. Sci Rep 2020;10:19471. [PMID: 33173098 PMCID: PMC7655955 DOI: 10.1038/s41598-020-76570-9] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Accepted: 10/28/2020] [Indexed: 12/11/2022]  Open
19
McKindles KM, Manes MA, DeMarco JR, McClure A, McKay RM, Davis TW, Bullerjahn GS. Dissolved Microcystin Release Coincident with Lysis of a Bloom Dominated by Microcystis spp. in Western Lake Erie Attributed to a Novel Cyanophage. Appl Environ Microbiol 2020;86:e01397-20. [PMID: 32859600 PMCID: PMC7642080 DOI: 10.1128/aem.01397-20] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 08/25/2020] [Indexed: 11/20/2022]  Open
20
Tromas N, Taranu ZE, Castelli M, Pimentel JSM, Pereira DA, Marcoz R, Shapiro BJ, Giani A. The evolution of realized niches within freshwater Synechococcus. Environ Microbiol 2020;22:1238-1250. [DOI: 10.1111/1462-2920.14930] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Revised: 01/21/2020] [Accepted: 01/24/2020] [Indexed: 12/15/2022]
21
Paver SF, Newton RJ, Coleman ML. Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry. Environ Microbiol 2019;22:433-446. [PMID: 31736217 PMCID: PMC6973239 DOI: 10.1111/1462-2920.14862] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2019] [Revised: 10/29/2019] [Accepted: 11/14/2019] [Indexed: 11/29/2022]
22
Salmaso N. Effects of Habitat Partitioning on the Distribution of Bacterioplankton in Deep Lakes. Front Microbiol 2019;10:2257. [PMID: 31636614 PMCID: PMC6788347 DOI: 10.3389/fmicb.2019.02257] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Accepted: 09/17/2019] [Indexed: 12/04/2022]  Open
23
Jackrel SL, White JD, Evans JT, Buffin K, Hayden K, Sarnelle O, Denef VJ. Genome evolution and host‐microbiome shifts correspond with intraspecific niche divergence within harmful algal bloom‐forming Microcystis aeruginosa. Mol Ecol 2019;28:3994-4011. [DOI: 10.1111/mec.15198] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 01/31/2023]
24
Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures. mBio 2019;10:mBio.01054-19. [PMID: 31363029 PMCID: PMC6667619 DOI: 10.1128/mbio.01054-19] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
25
Meola M, Rifa E, Shani N, Delbès C, Berthoud H, Chassard C. DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products. BMC Genomics 2019;20:560. [PMID: 31286860 PMCID: PMC6615214 DOI: 10.1186/s12864-019-5914-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 06/18/2019] [Indexed: 12/14/2022]  Open
26
Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory. Eur J Clin Microbiol Infect Dis 2019;38:1059-1070. [PMID: 30834996 PMCID: PMC6520317 DOI: 10.1007/s10096-019-03520-3] [Citation(s) in RCA: 120] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2018] [Accepted: 02/20/2019] [Indexed: 12/14/2022]
27
Lee KH, Gordon A, Shedden K, Kuan G, Ng S, Balmaseda A, Foxman B. The respiratory microbiome and susceptibility to influenza virus infection. PLoS One 2019;14:e0207898. [PMID: 30625134 PMCID: PMC6326417 DOI: 10.1371/journal.pone.0207898] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Accepted: 11/06/2018] [Indexed: 12/27/2022]  Open
28
Lezcano MÁ, Agha R, Cirés S, Quesada A. Spatial-temporal survey of Microcystis oligopeptide chemotypes in reservoirs with dissimilar waterbody features and their relation to genetic variation. HARMFUL ALGAE 2019;81:77-85. [PMID: 30638501 DOI: 10.1016/j.hal.2018.11.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Revised: 10/29/2018] [Accepted: 11/16/2018] [Indexed: 06/09/2023]
29
Monitoring of microbial dynamics in a drinking water distribution system using the culture-free, user-friendly, MYcrobiota platform. Sci Rep 2018;8:14727. [PMID: 30283052 PMCID: PMC6170421 DOI: 10.1038/s41598-018-32987-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Accepted: 08/30/2018] [Indexed: 12/29/2022]  Open
30
Guan DX, Wang X, Xu H, Chen L, Li P, Ma LQ. Temporal and spatial distribution of Microcystis biomass and genotype in bloom areas of Lake Taihu. CHEMOSPHERE 2018;209:730-738. [PMID: 29960940 DOI: 10.1016/j.chemosphere.2018.06.141] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Revised: 06/21/2018] [Accepted: 06/22/2018] [Indexed: 06/08/2023]
31
Salmaso N, Albanese D, Capelli C, Boscaini A, Pindo M, Donati C. Diversity and Cyclical Seasonal Transitions in the Bacterial Community in a Large and Deep Perialpine Lake. MICROBIAL ECOLOGY 2018;76:125-143. [PMID: 29192335 DOI: 10.1007/s00248-017-1120-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2017] [Accepted: 11/22/2017] [Indexed: 06/07/2023]
32
Huo D, Chen Y, Zheng T, Liu X, Zhang X, Yu G, Qiao Z, Li R. Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation Sequencing. Front Microbiol 2018;9:971. [PMID: 29867874 PMCID: PMC5962762 DOI: 10.3389/fmicb.2018.00971] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Accepted: 04/25/2018] [Indexed: 11/17/2022]  Open
33
Sheik CS, Reese BK, Twing KI, Sylvan JB, Grim SL, Schrenk MO, Sogin ML, Colwell FS. Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life. Front Microbiol 2018;9:840. [PMID: 29780369 PMCID: PMC5945997 DOI: 10.3389/fmicb.2018.00840] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Accepted: 04/12/2018] [Indexed: 11/15/2022]  Open
34
Tromas N, Taranu ZE, Martin BD, Willis A, Fortin N, Greer CW, Shapiro BJ. Niche Separation Increases With Genetic Distance Among Bloom-Forming Cyanobacteria. Front Microbiol 2018;9:438. [PMID: 29636727 PMCID: PMC5880894 DOI: 10.3389/fmicb.2018.00438] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Accepted: 02/26/2018] [Indexed: 11/13/2022]  Open
35
The oral microbiome. Emerg Top Life Sci 2017;1:287-296. [DOI: 10.1042/etls20170040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Revised: 10/13/2017] [Accepted: 10/16/2017] [Indexed: 11/17/2022]
36
Tragin M, Zingone A, Vaulot D. Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta. Environ Microbiol 2017;20:506-520. [DOI: 10.1111/1462-2920.13952] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 09/30/2017] [Indexed: 11/30/2022]
37
Okazaki Y, Fujinaga S, Tanaka A, Kohzu A, Oyagi H, Nakano SI. Ubiquity and quantitative significance of bacterioplankton lineages inhabiting the oxygenated hypolimnion of deep freshwater lakes. THE ISME JOURNAL 2017;11:2279-2293. [PMID: 28585941 PMCID: PMC5607371 DOI: 10.1038/ismej.2017.89] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Revised: 03/16/2017] [Accepted: 05/05/2017] [Indexed: 02/01/2023]
38
Terrisse F, Cravo-Laureau C, Noël C, Cagnon C, Dumbrell AJ, McGenity TJ, Duran R. Variation of Oxygenation Conditions on a Hydrocarbonoclastic Microbial Community Reveals Alcanivorax and Cycloclasticus Ecotypes. Front Microbiol 2017;8:1549. [PMID: 28861063 PMCID: PMC5562018 DOI: 10.3389/fmicb.2017.01549] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Accepted: 07/31/2017] [Indexed: 12/26/2022]  Open
39
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis. ISME JOURNAL 2017;11:2639-2643. [PMID: 28731476 PMCID: PMC5702726 DOI: 10.1038/ismej.2017.119] [Citation(s) in RCA: 1523] [Impact Index Per Article: 217.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Revised: 05/20/2017] [Accepted: 06/07/2017] [Indexed: 12/15/2022]
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