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Zhang X, Jia S, He Y, Wen J, Li D, Yang W, Yue Y, Li H, Cheng K, Zhang X. Wall-associated kinase GhWAK13 mediates arbuscular mycorrhizal symbiosis and Verticillium wilt resistance in cotton. THE NEW PHYTOLOGIST 2024; 242:2180-2194. [PMID: 38095050 DOI: 10.1111/nph.19468] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 11/22/2023] [Indexed: 05/14/2024]
Abstract
The cell wall is the major interface for arbuscular mycorrhizal (AM) symbiosis. However, the roles of cell wall proteins and cell wall synthesis in AM symbiosis remain unclear. We reported that a novel wall-associated kinase 13 (GhWAK13) positively regulates AM symbiosis and negatively regulates Verticillium wilt resistance in cotton. GhWAK13 transcription was induced by AM symbiosis and Verticillium dahliae (VD) infection. GhWAK13 is located in the plasma membrane and expressed in the arbuscule-containing cortical cells of mycorrhizal cotton roots. GhWAK13 silencing inhibited AM colonization and repressed gene expression of the mycorrhizal pathway. Moreover, GhWAK13 silencing improved Verticillium wilt resistance and triggered the expression of immunity genes. Therefore, GhWAK13 is considered an immune suppressor required for AM symbiosis and disease resistance. GhWAK7A, a positive regulator of Verticillium wilt resistance, was upregulated in GhWAK13-silenced cotton plants. Silencing GhWAK7A improved AM symbiosis. Oligogalacturonides application also suppressed AM symbiosis. Finally, GhWAK13 negatively affected the cellulose content by regulating the transcription of cellulose synthase genes. The results of this study suggest that immunity suppresses AM symbiosis in cotton. GhWAK13 affects AM symbiosis by suppressing immune responses.
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Affiliation(s)
- Xiangyu Zhang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Shuangjie Jia
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Yiming He
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Jingshang Wen
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Dongxiao Li
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Wan Yang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Ying Yue
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Huiling Li
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Kai Cheng
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
| | - Xiao Zhang
- National Key Laboratory of Cotton Bio-breeding and Integrated Utilization, School of Life Sciences, Henan University, Kaifeng, 475001, China
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Cook C, Huskey D, Mazzola M, Somera T. Effect of Rootstock Genotype and Arbuscular Mycorrhizal Fungal (AMF) Species on Early Colonization of Apple. PLANTS (BASEL, SWITZERLAND) 2024; 13:1388. [PMID: 38794458 PMCID: PMC11125189 DOI: 10.3390/plants13101388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 05/09/2024] [Accepted: 05/15/2024] [Indexed: 05/26/2024]
Abstract
The effect of plant cultivar on the degree of mycorrhization and the benefits mediated by arbuscular mycorrhizal fungi (AMF) have been documented in many crops. In apple, a wide variety of rootstocks are commercially available; however, it is not clear whether some rootstock genotypes are more susceptible to mycorrhization than others and/or whether AMF species identity influences rootstock compatibility. This study addresses these questions by directly testing the ability/efficacy of four different AMF species (Rhizophagus irregularis, Septoglomus deserticola, Claroideoglomus claroideum or Claroideoglomus etunicatum) to colonize a variety of commercially available Geneva apple rootstock genotypes (G.11, G.41, G.210, G.969, and G.890). Briefly, micropropagated plantlets were inoculated with individual species of AMF or were not inoculated. The effects of the rootstock genotype/AMF interaction on mycorrhization, plant growth, and/or leaf nutrient concentrations were assessed. We found that both rootstock genotype and the identity of the AMF are significant sources of variation affecting the percentage of colonization. However, these factors largely operate independently in terms of the extent of root colonization. Among the AMF tested, C. etunicatum and R. irregularis represented the most compatible fungal partners, regardless of apple rootstock genotype. Among the rootstocks tested, semi-dwarfing rootstocks appeared to have an advantage over dwarfing rootstocks in regard to establishing and maintaining associations with AMF. Nutrient uptake and plant growth outcomes were also influenced in a rootstock genotype/AMF species-specific manner. Our findings suggest that matching host genetics with compatible AMF species has the potential to enhance agricultural practices in nursery and orchard systems.
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Affiliation(s)
- Chris Cook
- Tree Fruit Research and Extension Center, Washington State University, 1100 N Western Ave, Wenatchee, WA 98801, USA;
| | - David Huskey
- United States Department of Agriculture-Agricultural Research Service Tree Fruit Research Lab, 1104 N Western Ave, Wenatchee, WA 98801, USA
| | - Mark Mazzola
- Department of Plant Pathology, Stellenbosch University, Private Bag X1, Matieland 7600, South Africa;
| | - Tracey Somera
- United States Department of Agriculture-Agricultural Research Service Tree Fruit Research Lab, 1104 N Western Ave, Wenatchee, WA 98801, USA
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Wang M, Xiang L, Tang W, Chen X, Li C, Yin C, Mao Z. Apple-arbuscular mycorrhizal symbiosis confers resistance to Fusarium solani by inducing defense response and elevating nitrogen absorption. PHYSIOLOGIA PLANTARUM 2024; 176:e14355. [PMID: 38783519 DOI: 10.1111/ppl.14355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 04/18/2024] [Accepted: 05/06/2024] [Indexed: 05/25/2024]
Abstract
Fusarium solani exerts detrimental effects on plant growth, which is one of the reasons for the incidence of apple replant disease. Arbuscular mycorrhizal fungi (AMF) enhance plant resistance to Fusarium wilt; however, the mechanism remains poorly understood. Therefore, the present study investigated the symbiosis between apple and AMF and explored the physiology, especially nitrate metabolism, antioxidant defense, and photosynthetic performance, when infected by F. solani. The experiment was carried out with four treatments, namely -AMF - F. solani, -AMF + F. solani, -AMF + F. solani, and + AMF + F. solani. In this study, the -AMF + F. solani treatment increased the activity of enzymes associated with nitrogen metabolism, such as the nitrate and nitrite reductases, in the apple root system. The +AMF + F. solani treatment showed higher antioxidant enzyme activities than the -AMF + F. solani by F. solani infection. The apple seedlings of the +AMF + F. solani treatment decreased reactive oxygen accumulation and reduced the oxidative damages triggered by F. solani infection. The improvement in antioxidant capacity due to the +AMF + F. solani treatment was closely associated with the upregulation of genes related to the antioxidant system. The F. solani infection greatly damaged the photosynthetic process, while the +AMF + F. solani treatment significantly improved it compared to the -AMF + F. solani treatment. In conclusion, the study demonstrated that the apple-AMF symbiosis plays an active role in regulating the resistance against F. solani infection by enhancing defense response and nitrogen metabolism.
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Affiliation(s)
- Mei Wang
- Key Laboratory of State Forestry Administration for Silviculture of the Lower Yellow River, Shandong Agricultural University, Tai'an, China
- Research Center for Forest Carbon Neutrality Engineering of Shandong Higher Education Institutions, Tai'an, Shandong, PR China
- Key Laboratory of Ecological Protection and Security Control of the Lower Yellow River of Shandong Higher Education Institutions, Tai'an, Shandong, PR China
| | - Li Xiang
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China
| | - Weixiao Tang
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China
| | - Xuesen Chen
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China
| | - Chuanrong Li
- Key Laboratory of State Forestry Administration for Silviculture of the Lower Yellow River, Shandong Agricultural University, Tai'an, China
- Research Center for Forest Carbon Neutrality Engineering of Shandong Higher Education Institutions, Tai'an, Shandong, PR China
- Key Laboratory of Ecological Protection and Security Control of the Lower Yellow River of Shandong Higher Education Institutions, Tai'an, Shandong, PR China
| | - Chengmiao Yin
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China
| | - Zhiquan Mao
- College of Horticultural Science and Engineering, Shandong Agricultural University, Tai'an, Shandong, China
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Pan J, Dong Q, Wen H, Liu Y, Wang X, Liu Y, Zhang X, Shi C, Zhao D, Lu X. Composition and Diversity of Endophytic Rhizosphere Microbiota in Apple Tree with Different Ages. Mol Biotechnol 2023:10.1007/s12033-023-00794-z. [PMID: 37523021 DOI: 10.1007/s12033-023-00794-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Accepted: 06/14/2023] [Indexed: 08/01/2023]
Abstract
In order to determine the underlying mechanism of the senescence occurring in older apple trees, the effects of tree age on the community structure and dominant genus of endophytic rhizosphere bacteria in apple were investigated. The diversity and structure of the bacterial communities and corresponding changes in the dominant genera of endophytic rhizosphere bacteria of apple at different ages (2, 8, 16, 22 years) were compared based on 16S rRNA high-throughput sequencing technology. The results revealed that the longer the tree age, the less the number of ASV in the endophytic bacteria. Moreover, the number of ASV in the endophytic bacteria gradually decreased as the tree age increased, however no significant changes were observed in the alpha diversity. At the phyla level, the relative abundance of Actinobacteria increased, while that of Proteobateria decreased. At the genus level, the relative abundance of Mycobacterium, Chujaibacter, and other genera increased, while the relative abundance of Aquabacterium, Ralstonia, Streptomyces, Asticcacaulis, Hyphomicrobium, Pseudomonas, and Sphingomonas decreased. The reduced relative abundance of endophytic rhizosphere bacteria associated with plant growth and disease resistance may thus be the cause of tree senescence. This work acts as a reference to increases the understanding of plant-microbe interactions.
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Affiliation(s)
- Jiyuan Pan
- College of Plant Protection, Hebei Agricultural University, No. 289 Lingyusi Street, Baoding, Hebei, China
| | - Qinglong Dong
- College of Forestry, Hebei Agricultural University, Baoding, Hebei, China
| | - Haibin Wen
- College of Plant Protection, Hebei Agricultural University, No. 289 Lingyusi Street, Baoding, Hebei, China
| | - Yang Liu
- College of Forestry, Hebei Agricultural University, Baoding, Hebei, China
| | - Xiaojie Wang
- College of Plant Protection, Hebei Agricultural University, No. 289 Lingyusi Street, Baoding, Hebei, China
| | - Yanan Liu
- College of Plant Protection, Hebei Agricultural University, No. 289 Lingyusi Street, Baoding, Hebei, China
| | - Xuemei Zhang
- College of Forestry, Hebei Agricultural University, Baoding, Hebei, China
- Hebei Walnut Technical Engineering Research Center, Lincheng, 054300, Hebei, China
| | - Chengmin Shi
- College of Plant Protection, Hebei Agricultural University, No. 289 Lingyusi Street, Baoding, Hebei, China
| | - Dan Zhao
- College of Plant Protection, Hebei Agricultural University, No. 289 Lingyusi Street, Baoding, Hebei, China.
| | - Xiujun Lu
- College of Plant Protection, Hebei Agricultural University, No. 289 Lingyusi Street, Baoding, Hebei, China.
- Hebei Walnut Technical Engineering Research Center, Lincheng, 054300, Hebei, China.
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Bokszczanin KŁ, Przybyłko S, Molska-Kawulok K, Wrona D. Tree Root-Associated Microbial Communities Depend on Various Floor Management Systems in an Intensive Apple ( Malus × domestica Borkh.) Orchard. Int J Mol Sci 2023; 24:9898. [PMID: 37373046 DOI: 10.3390/ijms24129898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 06/01/2023] [Accepted: 06/03/2023] [Indexed: 06/29/2023] Open
Abstract
Regenerative 3agriculture prioritizes soil health to build up organic soil carbon and nitrogen stocks while supporting the active and diverse soil biota that is a prerequisite for maintaining crop productivity and quality in sustainable food production. This study aimed at unravelling the impact of organic and inorganic soil maintenance systems in a 'Red Jonaprince' apple (Malus × domestica Borkh.) orchard on soil microbiota biodiversity and soil physico-chemical properties. During our study, we compared seven floor management systems in terms of microbial community diversity. Fungal and bacterial communities on all taxonomic levels differed largely between systems that augmented organic matter (organic) and other tested inorganic regimes. The dominant phylum of the soil in all management systems was Ascomycota. The operational taxonomic units (OTUs) within the Ascomycota were largely identified as members of Sordariomycetes, followed by Agaricomycetes, and both dominated in organic systems versus inorganic. The most prominent phyla, Proteobacteria, accounted for 43% of all assigned bacteria OTUs. Gammaproteobacteria, Bacteroidia, and Alphaproteobacteria were predominant in organic samples, while Acidobacteriae, Verrucomicrobiae, and Gemmatimonadetes were more abundant in inorganic mulches.
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Affiliation(s)
- Kamila Łucja Bokszczanin
- Department of Pomology and Horticulture Economics, Institute of Horticultural Sciences SGGW, Nowoursynowska 159 Str., 02-787 Warsaw, Poland
| | - Sebastian Przybyłko
- Department of Pomology and Horticulture Economics, Institute of Horticultural Sciences SGGW, Nowoursynowska 159 Str., 02-787 Warsaw, Poland
| | - Karolina Molska-Kawulok
- Department of Pomology and Horticulture Economics, Institute of Horticultural Sciences SGGW, Nowoursynowska 159 Str., 02-787 Warsaw, Poland
| | - Dariusz Wrona
- Department of Pomology and Horticulture Economics, Institute of Horticultural Sciences SGGW, Nowoursynowska 159 Str., 02-787 Warsaw, Poland
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Elhamouly NA, Hewedy OA, Zaitoon A, Miraples A, Elshorbagy OT, Hussien S, El-Tahan A, Peng D. The hidden power of secondary metabolites in plant-fungi interactions and sustainable phytoremediation. FRONTIERS IN PLANT SCIENCE 2022; 13:1044896. [PMID: 36578344 PMCID: PMC9790997 DOI: 10.3389/fpls.2022.1044896] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
Abstract
The global environment is dominated by various small exotic substances, known as secondary metabolites, produced by plants and microorganisms. Plants and fungi are particularly plentiful sources of these molecules, whose physiological functions, in many cases, remain a mystery. Fungal secondary metabolites (SM) are a diverse group of substances that exhibit a wide range of chemical properties and generally fall into one of four main family groups: Terpenoids, polyketides, non-ribosomal peptides, or a combination of the latter two. They are incredibly varied in their functions and are often related to the increased fitness of the respective fungus in its environment, often competing with other microbes or interacting with plant species. Several of these metabolites have essential roles in the biological control of plant diseases by various beneficial microorganisms used for crop protection and biofertilization worldwide. Besides direct toxic effects against phytopathogens, natural metabolites can promote root and shoot development and/or disease resistance by activating host systemic defenses. The ability of these microorganisms to synthesize and store biologically active metabolites that are a potent source of novel natural compounds beneficial for agriculture is becoming a top priority for SM fungi research. In this review, we will discuss fungal-plant secondary metabolites with antifungal properties and the role of signaling molecules in induced and acquired systemic resistance activities. Additionally, fungal secondary metabolites mimic plant promotion molecules such as auxins, gibberellins, and abscisic acid, which modulate plant growth under biotic stress. Moreover, we will present a new trend regarding phytoremediation applications using fungal secondary metabolites to achieve sustainable food production and microbial diversity in an eco-friendly environment.
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Affiliation(s)
- Neveen Atta Elhamouly
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- Department of Botany, Faculty of Agriculture, Menoufia University, Shibin El-Kom, Egypt
| | - Omar A. Hewedy
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
| | - Amr Zaitoon
- Department of Food Science, University of Guelph, Guelph, ON, Canada
| | - Angelica Miraples
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
| | - Omnia T. Elshorbagy
- School of Natural and Environmental Sciences, Faculty of Science, Agriculture & Engineering, Newcastle University, Newcastle upon Tyne, United Kingdom
| | - Suzan Hussien
- Botany Department Faculty of Science, Mansoura University, Mansoura, Egypt
| | - Amira El-Tahan
- Plant Production Department, Arid Lands Cultivation Research Institute, the City of Scientific Research and Technological Applications, City of Scientific Research and Technological Applications (SRTA-City), Borg El Arab, Alexandria, Egypt
| | - Deliang Peng
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
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Ji C, Chen Z, Kong X, Xin Z, Sun F, Xing J, Li C, Li K, Liang Z, Cao H. Biocontrol and plant growth promotion by combined Bacillus spp. inoculation affecting pathogen and AMF communities in the wheat rhizosphere at low salt stress conditions. FRONTIERS IN PLANT SCIENCE 2022; 13:1043171. [PMID: 36570885 PMCID: PMC9773258 DOI: 10.3389/fpls.2022.1043171] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 10/28/2022] [Indexed: 06/17/2023]
Abstract
Applying plant growth-promoting rhizobacteria (PGPR) improves the efficiency of soil-borne disease control and is considered a sustainable practice. However, the effect of PGPR on the fungal community, especially pathogenic fungi and arbuscular mycorrhizal fungi (AMF), remains unclear. In this study, we examined the effects of a compound microbial agent (consisting of Bacillus subtilis HG-15 and Bacillus velezensis JC-K3) on the incidence and yield of wheat under low salt stress, as well as compared the diversity and community composition of the rhizosphere fungal and AMF communities of wheat in the CK (not inoculated bacterial agent) and BIO (inoculated with a bacterial agent) groups. Chlorophyll relative content (SPAD), net photosynthesis rate (Pn), transpiration rate (Tr), leaf water use efficiency (WUE L), grains per spike and wheat yield in the BIO group increased more than in the CK group. The number of diseased plants and disease incidence was observed to be reduced. The relative efficacy reached 79.80%. We classified 1007 fungal operational taxonomic units (OTU) based on Miseq sequencing data: 11 phyla, 173 families, 319 genera, and 521 species. Fifty-four OTUs were classified from the AMF effective sequences, including 1 phylum, 3 families, 3 genera, and 17 species. The inoculation of bacterial agents reduced the relative abundance of pathogen genera such as Gibberella, Fusarium, Cladosporium, and Alternaria in wheat rhizosphere. It increased the relative abundance of AMF species such as Glomus-group-B-Glomus-lamellosu-VTX00193, Glomus-viscosum-VTX00063, and Glomus-Glo2-VTX00280. In addition, pH, EC, exchangeable K, available N, total N, organic matter, and olsen P were the main driving forces for shaping wheat rhizosphere fungi. The pH value was positively correlated with the relative abundance of fungal communities in soil, especially Gibberella, Cladosporium, Fusarium, and Alternaria. In summary, inoculation with Bacillus subtilis HG-15 and Bacillus velezensis JC-K3 affected wheat yield, incidence, rhizosphere soil chemical properties, rhizosphere fungi, and AMF fungal diversity and community. The findings may provide a theoretical foundation and strain support for constructing efficient PGPR-community and clarifying its mechanism of pathogenic bacteria inhibition.
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Affiliation(s)
- Chao Ji
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
- Shandong Yongsheng Agricultural Development Co., Ltd. Yongsheng (Shouguang) Vegetable Technology Research Institute Co., Ltd, Shandong Engineering Research Center, Weifang, Shandong, China
- Runxin Fruit and Vegetable Cultivation Cooperative of Weifang Economic Development Zone, Weifang Agricultural Bureau, Weifang, Shandong, China
| | - Zhizhang Chen
- College of Foreign Languages, Weifang University, Weifang, Shandong, China
| | - Xuehua Kong
- Weifang Hanting Vestibule School, Weifang Education Bureau, Weifang, Shandong, China
| | - Zhiwen Xin
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Fujin Sun
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Runxin Fruit and Vegetable Cultivation Cooperative of Weifang Economic Development Zone, Weifang Agricultural Bureau, Weifang, Shandong, China
| | - Jiahao Xing
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Chunyu Li
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
| | - Kun Li
- College of Forestry, Shandong Agriculture University, Taian, Shandong, China
- Taishan Forest Ecosystem Research Station, Key Laboratory of State Forestry Administration for Silviculture of the Lower Yellow River, Shandong Agricultural University, Taian, Shandong, China
| | - Zengwen Liang
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
- Shandong Yongsheng Agricultural Development Co., Ltd. Yongsheng (Shouguang) Vegetable Technology Research Institute Co., Ltd, Shandong Engineering Research Center, Weifang, Shandong, China
| | - Hui Cao
- College of Seed and Facility Agricultural Engineering, Weifang University, Weifang, Shandong, China
- Key Laboratory of Biochemistry and Molecular Biology in University of Shandong Province, Weifang University, Weifang, Shandong, China
- Shandong Yongsheng Agricultural Development Co., Ltd. Yongsheng (Shouguang) Vegetable Technology Research Institute Co., Ltd, Shandong Engineering Research Center, Weifang, Shandong, China
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Eck JL, Kytöviita M, Laine A. Arbuscular mycorrhizal fungi influence host infection during epidemics in a wild plant pathosystem. THE NEW PHYTOLOGIST 2022; 236:1922-1935. [PMID: 36093733 PMCID: PMC9827988 DOI: 10.1111/nph.18481] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 08/15/2022] [Indexed: 05/29/2023]
Abstract
While pathogenic and mutualistic microbes are ubiquitous across ecosystems and often co-occur within hosts, how they interact to determine patterns of disease in genetically diverse wild populations is unknown. To test whether microbial mutualists provide protection against pathogens, and whether this varies among host genotypes, we conducted a field experiment in three naturally occurring epidemics of a fungal pathogen, Podosphaera plantaginis, infecting a host plant, Plantago lanceolata, in the Åland Islands, Finland. In each population, we collected epidemiological data on experimental plants from six allopatric populations that had been inoculated with a mixture of mutualistic arbuscular mycorrhizal fungi or a nonmycorrhizal control. Inoculation with arbuscular mycorrhizal fungi increased growth in plants from every population, but also increased host infection rate. Mycorrhizal effects on disease severity varied among host genotypes and strengthened over time during the epidemic. Host genotypes that were more susceptible to the pathogen received stronger protective effects from inoculation. Our results show that arbuscular mycorrhizal fungi introduce both benefits and risks to host plants, and shift patterns of infection in host populations under pathogen attack. Understanding how mutualists alter host susceptibility to disease will be important for predicting infection outcomes in ecological communities and in agriculture.
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Affiliation(s)
- Jenalle L. Eck
- Department of Evolutionary Biology and Environmental StudiesUniversity of Zurich8057ZurichSwitzerland
| | - Minna‐Maarit Kytöviita
- Department of Biological and Environmental ScienceUniversity of Jyväskylä40014JyväskyläFinland
| | - Anna‐Liisa Laine
- Department of Evolutionary Biology and Environmental StudiesUniversity of Zurich8057ZurichSwitzerland
- Organismal and Evolutionary Biology Research Program, Faculty of Biological and Environmental SciencesUniversity of Helsinki00790HelsinkiFinland
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Liao D, Sun C, Liang H, Wang Y, Bian X, Dong C, Niu X, Yang M, Xu G, Chen A, Wu S. SlSPX1-SlPHR complexes mediate the suppression of arbuscular mycorrhizal symbiosis by phosphate repletion in tomato. THE PLANT CELL 2022; 34:4045-4065. [PMID: 35863053 PMCID: PMC9516199 DOI: 10.1093/plcell/koac212] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 07/14/2022] [Indexed: 05/22/2023]
Abstract
Forming mutualistic symbioses with arbuscular mycorrhizae (AMs) improves the acquisition of mineral nutrients for most terrestrial plants. However, the formation of AM symbiosis usually occurs under phosphate (Pi)-deficient conditions. Here, we identify SlSPX1 (SYG1 (suppressor of yeast GPA1)/Pho81(phosphate 81)/XPR1 (xenotropic and polytropic retrovirus receptor 1) as the major repressor of the AM symbiosis in tomato (Solanum lycopersicum) under phosphate-replete conditions. Loss of SlSPX1 function promotes direct Pi uptake and enhances AM colonization under phosphate-replete conditions. We determine that SlSPX1 integrates Pi signaling and AM symbiosis by directly interacting with a set of arbuscule-induced SlPHR proteins (SlPHR1, SlPHR4, SlPHR10, SlPHR11, and SlPHR12). The association with SlSPX1 represses the ability of SlPHR proteins to activate AM marker genes required for the arbuscular mycorrhizal symbiosis. SlPHR proteins exhibit functional redundancy, and no defective AM symbiosis was detected in the single mutant of SlPHR proteins. However, silencing SlPHR4 in the Slphr1 mutant background led to reduced AM colonization. Therefore, our results support the conclusion that SlSPX1-SlPHRs form a Pi-sensing module to coordinate the AM symbiosis under different Pi-availability conditions.
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Affiliation(s)
| | | | - Haiyan Liang
- College of Horticulture, College of Life Sciences, FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yang Wang
- College of Horticulture, College of Life Sciences, FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xinxin Bian
- College of Horticulture, College of Life Sciences, FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Chaoqun Dong
- College of Horticulture, College of Life Sciences, FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xufang Niu
- College of Horticulture, College of Life Sciences, FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Meina Yang
- College of Horticulture, College of Life Sciences, FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Guohua Xu
- Author for correspondence: (G.X.), (A.C.), (S.W.)
| | - Aiqun Chen
- Author for correspondence: (G.X.), (A.C.), (S.W.)
| | - Shuang Wu
- Author for correspondence: (G.X.), (A.C.), (S.W.)
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10
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Todeschini V, Anastasia F, Massa N, Marsano F, Cesaro P, Bona E, Gamalero E, Oddi L, Lingua G. Impact of Phosphatic Nutrition on Growth Parameters and Artemisinin Production in Artemisia annua Plants Inoculated or Not with Funneliformis mosseae. Life (Basel) 2022; 12:life12040497. [PMID: 35454988 PMCID: PMC9025405 DOI: 10.3390/life12040497] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 03/20/2022] [Accepted: 03/27/2022] [Indexed: 12/31/2022] Open
Abstract
Artemisia annua L. is a medicinal plant appreciated for the production of artemisinin, a molecule used for malaria treatment. However, the natural concentration of artemisinin in planta is low. Plant nutrition, in particular phosphorus, and arbuscular mycorrhizal (AM) fungi can affect both plant biomass and secondary metabolite production. In this work, A. annua plants were ino- culated or not with the AM fungus Funneliformis mosseae BEG12 and cultivated for 2 months in controlled conditions at three different phosphatic (P) concentrations (32, 96, and 288 µM). Plant growth parameters, leaf photosynthetic pigment concentrations, artemisinin production, and mineral uptake were evaluated. The different P levels significantly affected the plant shoot growth, AM fungal colonization, and mineral acquisition. High P levels negatively influenced mycorrhizal colonization. The artemisinin concentration was inversely correlated to the P level in the substrate. The fungus mainly affected root growth and nutrient uptake and significantly lowered leaf artemisinin concentration. In conclusion, P nutrition can influence plant biomass production and the lowest phosphate level led to the highest artemisinin concentration, irrespective of the plant mineral uptake. Plant responses to AM fungi can be modulated by cost–benefit ratios of the mutualistic exchange between the partners and soil nutrient availability.
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Affiliation(s)
- Valeria Todeschini
- Dipartimento di Scienze ed Innovazione Tecnologica, Università del Piemonte Orientale, 15121 Alessandria, Italy; (F.A.); (N.M.); (F.M.); (P.C.); (E.G.); (G.L.)
- Correspondence: ; Tel.: +39-0131-360210
| | - Flavio Anastasia
- Dipartimento di Scienze ed Innovazione Tecnologica, Università del Piemonte Orientale, 15121 Alessandria, Italy; (F.A.); (N.M.); (F.M.); (P.C.); (E.G.); (G.L.)
| | - Nadia Massa
- Dipartimento di Scienze ed Innovazione Tecnologica, Università del Piemonte Orientale, 15121 Alessandria, Italy; (F.A.); (N.M.); (F.M.); (P.C.); (E.G.); (G.L.)
| | - Francesco Marsano
- Dipartimento di Scienze ed Innovazione Tecnologica, Università del Piemonte Orientale, 15121 Alessandria, Italy; (F.A.); (N.M.); (F.M.); (P.C.); (E.G.); (G.L.)
| | - Patrizia Cesaro
- Dipartimento di Scienze ed Innovazione Tecnologica, Università del Piemonte Orientale, 15121 Alessandria, Italy; (F.A.); (N.M.); (F.M.); (P.C.); (E.G.); (G.L.)
| | - Elisa Bona
- Dipartimento per lo Sviluppo Sostenibile e la Transizione Ecologica, Università del Piemonte Orientale, 13100 Vercelli, Italy;
| | - Elisa Gamalero
- Dipartimento di Scienze ed Innovazione Tecnologica, Università del Piemonte Orientale, 15121 Alessandria, Italy; (F.A.); (N.M.); (F.M.); (P.C.); (E.G.); (G.L.)
| | - Ludovica Oddi
- Dipartimento di Scienze della Vita e Biologia dei Sistemi, Università degli Studi di Torino, 10123 Torino, Italy;
| | - Guido Lingua
- Dipartimento di Scienze ed Innovazione Tecnologica, Università del Piemonte Orientale, 15121 Alessandria, Italy; (F.A.); (N.M.); (F.M.); (P.C.); (E.G.); (G.L.)
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11
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Glomus mosseae and Pseudomonas fluorescens Application Sustains Yield and Promote Tolerance to Water Stress in Helianthus annuus L. STRESSES 2021. [DOI: 10.3390/stresses1040022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
The inoculation of sunflower (Helianthus annuus L.) plants with arbuscular mycorrhizal fungi (AMF) and plant growth-promoting rhizobacteria (PGPR) can significantly enhance its growth and yield in a sustainable manner. Drought tolerance is mediated by a combination of direct AMF and PGPR benefits that boost the plant’s natural ability to cope with stress, whereas drought mitigation is mediated by indirect AMF and PGPR benefits and increased water uptake. An experiment was carried out to demonstrate the interactive effects of AMF (Glomus mosseae) alone or in association with PGPR (Pseudomonas fluorescens) under water-stressed conditions in order to assess their biofertilizer efficiency. Accordingly, various morphological and biochemical parameters were studied, and the results suggested that all the co-inoculation treatments displayed beneficial effects. Still, the combination of G. mosseae + P. fluorescens showed the maximum increment in all the parameters considered, i.e., plant height and weight, leaves length and width, number of leaves per plant, specific leaf weight, relative leaf water content (RLWC), photosynthetic efficiency, seed length, width, and area, seed yield per plant, number of seeds per flower, days to 50% flowering, days to maturity, flower and head diameter, harvest index, oil content, fatty acid composition (palmitic acid, oleic acid, stearic acid, and linoleic acid), and total yield. The improvement in different parameters may be attributed to the increased availability of nutrients due to the symbiotic association of AMF and PGPR with plant roots along with enhanced root structures for more water absorption under stressed conditions. Therefore, the results suggested that they offer a promising bio-control strategy for crop protection as biofertilizers combined in one formulation.
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12
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The Mycorrizal Status in Vineyards Affected by Esca. J Fungi (Basel) 2021; 7:jof7100869. [PMID: 34682291 PMCID: PMC8540504 DOI: 10.3390/jof7100869] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2021] [Revised: 10/11/2021] [Accepted: 10/12/2021] [Indexed: 12/16/2022] Open
Abstract
In this work we analyzed the relationship among native arbuscular mycorrhizal fungi (AMF) and vine roots affected by esca, a serious grapevine trunk disease. The AMF symbiosis was analyzed on the roots of neighboring plants (symptomatic and asymptomatic to esca) in 14 sites of three vineyards in Marche region (central–eastern Italy). The AMF colonization intensity, identified by non-vital staining, showed higher value in all esca symptomatic plants (ranging from 24.6% to 61.3%) than neighboring asymptomatic plants (from 17.4% to 57.6%). The same trend of Glomeromycota phylum abundance was detected by analyzing fungal operational taxonomic units (OTUs) linked to the AMF community, obtained by amplicon high throughput analysis of ITS 1 region. Overall, the highest amount of OTUs was detected on roots from symptomatic plants (0.42%), compared to asymptomatic roots (0.29%). Specific primer pairs for native Rhizophagus irregularis and Funneliformis mosseae AMF species, were designed in 28S rRNA and large subunit (LSU) ribosomal RNA, respectively, and droplet digital PCR protocol for absolute quantification was set up. A higher number of DNA copies of both fungal species were detected more frequently in symptomatic than asymptomatic vines. Our study suggests a relationship between esca and native AMF in grapevine. These results underline the importance of native rhizosphere microbial communities for a better knowledge of grapevine esca disease.
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13
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O'Brien AM, Ginnan NA, Rebolleda-Gómez M, Wagner MR. Microbial effects on plant phenology and fitness. AMERICAN JOURNAL OF BOTANY 2021; 108:1824-1837. [PMID: 34655479 DOI: 10.1002/ajb2.1743] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Accepted: 07/07/2021] [Indexed: 06/13/2023]
Abstract
Plant development and the timing of developmental events (phenology) are tightly coupled with plant fitness. A variety of internal and external factors determine the timing and fitness consequences of these life-history transitions. Microbes interact with plants throughout their life history and impact host phenology. This review summarizes current mechanistic and theoretical knowledge surrounding microbe-driven changes in plant phenology. Overall, there are examples of microbes impacting every phenological transition. While most studies have focused on flowering time, microbial effects remain important for host survival and fitness across all phenological phases. Microbe-mediated changes in nutrient acquisition and phytohormone signaling can release plants from stressful conditions and alter plant stress responses inducing shifts in developmental events. The frequency and direction of phenological effects appear to be partly determined by the lifestyle and the underlying nature of a plant-microbe interaction (i.e., mutualistic or pathogenic), in addition to the taxonomic group of the microbe (fungi vs. bacteria). Finally, we highlight biases, gaps in knowledge, and future directions. This biotic source of plasticity for plant adaptation will serve an important role in sustaining plant biodiversity and managing agriculture under the pressures of climate change.
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Affiliation(s)
- Anna M O'Brien
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, ON, Canada
| | - Nichole A Ginnan
- Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, USA
| | - María Rebolleda-Gómez
- Department of Ecology and Evolutionary Biology, University of California-Irvine, Irvine, CA, USA
| | - Maggie R Wagner
- Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, KS, USA
- Kansas Biological Survey and Center for Ecological Research, University of Kansas, Lawrence, KS, USA
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14
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Moukarzel R, Ridgway HJ, Guerin-Laguette A, Jones EE. Grapevine rootstocks drive the community structure of arbuscular mycorrhizal fungi in New Zealand vineyards. J Appl Microbiol 2021; 131:2941-2956. [PMID: 34028142 DOI: 10.1111/jam.15160] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 05/02/2021] [Accepted: 05/20/2021] [Indexed: 11/27/2022]
Abstract
AIM Arbuscular mycorrhizal fungi (AMF) are often regarded as non-specific symbionts, but some AMF communities show host preference in various ecosystems including vineyards. Grapevine plants are very responsive to AMF colonization. Although these fungi have potentially significant applications for sustainable agricultural ecosystems, there is a gap in knowledge regarding AMF-grapevine interactions worldwide and especially in New Zealand. This study focused on identifying AMF taxa colonizing grapevines in New Zealand vineyards and investigated the effect of grapevine rootstocks on AMF community diversity and composition. METHODS AND RESULTS Denaturing gradient gel electrophoresis (DGGE) and trap cultures were used to characterize the AMF communities. Grapevine roots from three vineyards and nine rootstocks were analysed by DGGE and used in trap cultures for AMF recovery. Trap cultures allowed the recovery of six AMF spore morphotypes that belonged to Ambispora sp., Claroideoglomus sp., Funneliformis sp. and Glomus sp. Bands excised, reamplified and sequenced from the DGGE were assigned to Glomus sp., Rhizophagus sp. and Claroideoglomus sp. The AMF community analyses demonstrated that rootstock significantly (P < 0·05) influenced the AMF community composition in all sites. CONCLUSIONS The study showed that for a comprehensive identification of AMF, both results from trap culture and molecular work were needed and that the rootstock cultivar was the main driver of the arbuscular mycorrhizal community colonizing the roots. SIGNIFICANCE AND IMPACT OF THE STUDY This study provides a firm foundation for future research exploring the beneficial use of AMF in enhancing grapevine production and sustainability.
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Affiliation(s)
- R Moukarzel
- Lincoln University, Lincoln, Canterbury, New Zealand
| | - H J Ridgway
- The New Zealand Institute for Plant and Food Research Ltd, Private Bag 4704, Christchurch, New Zealand
| | - A Guerin-Laguette
- Mycotree C/-Southern Woods Nursery, Christchurch, Canterbury, New Zealand
| | - E E Jones
- Lincoln University, Lincoln, Canterbury, New Zealand
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15
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Arbuscular Mycorrhizal Fungi Inoculation Reduced the Growth of Pre-Rooted Olive Cuttings in a Greenhouse. SOIL SYSTEMS 2021. [DOI: 10.3390/soilsystems5020030] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The effect of commercial mycorrhizal fungi on pre-rooted olive cuttings was assessed. The study consisted of two experiments, the first arranged as a factorial design with three cultivars (Cobrançosa, Madural, and Verdeal Transmontana) and three soil treatments (commercial mycorrhizal fungi, zeolites, and control) and the second as a completely randomized design with three treatments (commercial mycorrhizal fungi, sterilized soil, and control). Cobrançosa grew better than the other cultivars, showing good rooting and initial growth features. Mycorrhizal plants showed reduced growth in comparison to those of the untreated control. This result was explained by competition for photosynthates between plant growth and the expansion of fungi hyphae. Cuttings of reduced leaf area and a twin-wall polycarbonate cover of the greenhouse, somewhat opaque to photosynthetic active radiation, may also have contributed to limit the maximum photosynthetic rate and delay the growth of the inoculated plants. Accordingly, in the mycorrhizal pots, the soil organic carbon (C) increased, probably due to the presence of fungi hyphae in soil samples. Zeolites reduced plant dry matter (DM) yield and tissue phosphorus (P) concentration compared to the control, while increasing the availability in the soil of the cations present in their initial composition. Soil sterilization seems to have reduced soil P bioavailability by inactivating soil enzymes. This study showed that the inoculation with mycorrhizal fungi of pre-rooted cuttings can delay their initial growth. Although these plants may be better prepared to grow in the field, in the short term, their lower development can be a problem for the nurseryman.
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16
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Sweeney CJ, de Vries FT, van Dongen BE, Bardgett RD. Root traits explain rhizosphere fungal community composition among temperate grassland plant species. THE NEW PHYTOLOGIST 2021; 229:1492-1507. [PMID: 33006139 DOI: 10.1111/nph.16976] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2020] [Accepted: 09/17/2020] [Indexed: 05/04/2023]
Abstract
While it is known that interactions between plants and soil fungi drive many essential ecosystem functions, considerable uncertainty exists over the drivers of fungal community composition in the rhizosphere. Here, we examined the roles of plant species identity, phylogeny and functional traits in shaping rhizosphere fungal communities and tested the robustness of these relationships to environmental change. We conducted a glasshouse experiment consisting of 21 temperate grassland species grown under three different environmental treatments and characterised the fungal communities within the rhizosphere of these plants. We found that plant species identity, plant phylogenetic relatedness and plant traits all affected rhizosphere fungal community composition. Trait relationships with fungal communities were primarily driven by interactions with arbuscular mycorrhizal fungi, and root traits were stronger predictors of fungal communities than leaf traits. These patterns were independent of the environmental treatments the plants were grown under. Our results showcase the key role of plant root traits, especially root diameter, root nitrogen and specific root length, in driving rhizosphere fungal community composition, demonstrating the potential for root traits to be used within predictive frameworks of plant-fungal relationships. Furthermore, we highlight how key limitations in our understanding of fungal function may obscure previously unmeasured plant-fungal interactions.
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Affiliation(s)
- Christopher J Sweeney
- Department of Earth and Environmental Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
| | - Franciska T de Vries
- Department of Earth and Environmental Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
- Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, PO 7 Box 94240, Amsterdam, 1090 GE, the Netherlands
| | - Bart E van Dongen
- Department of Earth and Environmental Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
| | - Richard D Bardgett
- Department of Earth and Environmental Sciences, The University of Manchester, Oxford Road, Manchester, M13 9PT, UK
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17
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Soil nutrients differentially influence root colonisation patterns of AMF and DSE in Australian plant species. Symbiosis 2021. [DOI: 10.1007/s13199-021-00748-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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18
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Oyserman BO, Cordovez V, Flores SS, Leite MFA, Nijveen H, Medema MH, Raaijmakers JM. Extracting the GEMs: Genotype, Environment, and Microbiome Interactions Shaping Host Phenotypes. Front Microbiol 2021; 11:574053. [PMID: 33584558 PMCID: PMC7874016 DOI: 10.3389/fmicb.2020.574053] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Accepted: 12/14/2020] [Indexed: 12/14/2022] Open
Abstract
One of the fundamental tenets of biology is that the phenotype of an organism (Y) is determined by its genotype (G), the environment (E), and their interaction (GE). Quantitative phenotypes can then be modeled as Y = G + E + GE + e, where e is the biological variance. This simple and tractable model has long served as the basis for studies investigating the heritability of traits and decomposing the variability in fitness. The importance and contribution of microbe interactions to a given host phenotype is largely unclear, nor how this relates to the traditional GE model. Here we address this fundamental question and propose an expansion of the original model, referred to as GEM, which explicitly incorporates the contribution of the microbiome (M) to the host phenotype, while maintaining the simplicity and tractability of the original GE model. We show that by keeping host, environment, and microbiome as separate but interacting variables, the GEM model can capture the nuanced ecological interactions between these variables. Finally, we demonstrate with an in vitro experiment how the GEM model can be used to statistically disentangle the relative contributions of each component on specific host phenotypes.
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Affiliation(s)
- Ben O. Oyserman
- Department of Microbial Ecology, Netherlands Institute of Ecology, Wageningen, Netherlands
- Bioinformatics Group, Wageningen University & Research, Wageningen, Netherlands
| | - Viviane Cordovez
- Department of Microbial Ecology, Netherlands Institute of Ecology, Wageningen, Netherlands
- Institute of Biology, Leiden University, Leiden, Netherlands
| | | | - Marcio F. A. Leite
- Department of Microbial Ecology, Netherlands Institute of Ecology, Wageningen, Netherlands
| | - Harm Nijveen
- Bioinformatics Group, Wageningen University & Research, Wageningen, Netherlands
| | - Marnix H. Medema
- Bioinformatics Group, Wageningen University & Research, Wageningen, Netherlands
| | - Jos M. Raaijmakers
- Department of Microbial Ecology, Netherlands Institute of Ecology, Wageningen, Netherlands
- Institute of Biology, Leiden University, Leiden, Netherlands
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19
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Mycorrhizal Fungi were More Effective than Zeolites in Increasing the Growth of Non-Irrigated Young Olive Trees. SUSTAINABILITY 2020. [DOI: 10.3390/su122410630] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Four soil treatments, consisting of two commercial mycorrhizal fungi, one zeolite and an untreated control, were arranged in a factorial design with two foliar fertilization treatments, a foliar spray and a control to study the effects of commercial mycorrhizal fungi and zeolites on the growth of young, rainfed olive trees planted in very acidic soil. The concentrations in the plant tissues of most of essential nutrients, particularly nitrogen (N), phosphorus (P), potassium (K) and boron (B), did not significantly change with the soil treatments, whereas leaf N and B concentrations significantly increased with foliar fertilization. Leaf calcium (Ca) and magnesium (Mg) levels were found to be much lower than their respective sufficiency ranges and increased with soil amendments, also giving positive outcomes for plant water status, photosynthetic activity and assimilation area. Ultimately, the mycorrhizal fungi increased the growth of the young trees, whereas the effect of zeolites was much smaller and not significantly different to the control. Thus, it seems that in this very acidic soil and under rainfed conditions, the major benefits for plants from the application of mycorrhizal fungi and zeolites were the alleviation of drought stress and tissue Ca and Mg disorders.
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20
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Kaur S, Suseela V. Unraveling Arbuscular Mycorrhiza-Induced Changes in Plant Primary and Secondary Metabolome. Metabolites 2020; 10:E335. [PMID: 32824704 PMCID: PMC7464697 DOI: 10.3390/metabo10080335] [Citation(s) in RCA: 53] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Revised: 08/02/2020] [Accepted: 08/12/2020] [Indexed: 01/10/2023] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) is among the most ubiquitous plant mutualists that enhance plant growth and yield by facilitating the uptake of phosphorus and water. The countless interactions that occur in the rhizosphere between plants and its AMF symbionts are mediated through the plant and fungal metabolites that ensure partner recognition, colonization, and establishment of the symbiotic association. The colonization and establishment of AMF reprogram the metabolic pathways of plants, resulting in changes in the primary and secondary metabolites, which is the focus of this review. During initial colonization, plant-AMF interaction is facilitated through the regulation of signaling and carotenoid pathways. After the establishment, the AMF symbiotic association influences the primary metabolism of the plant, thus facilitating the sharing of photosynthates with the AMF. The carbon supply to AMF leads to the transport of a significant amount of sugars to the roots, and also alters the tricarboxylic acid cycle. Apart from the nutrient exchange, the AMF imparts abiotic stress tolerance in host plants by increasing the abundance of several primary metabolites. Although AMF initially suppresses the defense response of the host, it later primes the host for better defense against biotic and abiotic stresses by reprogramming the biosynthesis of secondary metabolites. Additionally, the influence of AMF on signaling pathways translates to enhanced phytochemical content through the upregulation of the phenylpropanoid pathway, which improves the quality of the plant products. These phytometabolome changes induced by plant-AMF interaction depends on the identity of both plant and AMF species, which could contribute to the differential outcome of this symbiotic association. A better understanding of the phytochemical landscape shaped by plant-AMF interactions would enable us to harness this symbiotic association to enhance plant performance, particularly under non-optimal growing conditions.
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Affiliation(s)
| | - Vidya Suseela
- Department of Plant and Environmental Sciences, Clemson University, Clemson, SC 29634, USA;
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21
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Thirkell TJ, Pastok D, Field KJ. Carbon for nutrient exchange between arbuscular mycorrhizal fungi and wheat varies according to cultivar and changes in atmospheric carbon dioxide concentration. GLOBAL CHANGE BIOLOGY 2020; 26:1725-1738. [PMID: 31645088 PMCID: PMC7079082 DOI: 10.1111/gcb.14851] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 09/16/2019] [Accepted: 09/20/2019] [Indexed: 05/26/2023]
Abstract
Arbuscular mycorrhizal fungi (AMF) form symbioses with most crops, potentially improving their nutrient assimilation and growth. The effects of cultivar and atmospheric CO2 concentration ([CO2 ]) on wheat-AMF carbon-for-nutrient exchange remain critical knowledge gaps in the exploitation of AMF for future sustainable agricultural practices within the context of global climate change. We used stable and radioisotope tracers (15 N, 33 P, 14 C) to quantify AMF-mediated nutrient uptake and fungal acquisition of plant carbon in three wheat (Triticum aestivum L.) cultivars. We grew plants under current ambient (440 ppm) and projected future atmospheric CO2 concentrations (800 ppm). We found significant 15 N transfer from fungus to plant in all cultivars, and cultivar-specific differences in total N content. There was a trend for reduced N uptake under elevated atmospheric [CO2 ]. Similarly, 33 P uptake via AMF was affected by cultivar and atmospheric [CO2 ]. Total P uptake varied significantly among wheat cultivars and was greater at the future than current atmospheric [CO2 ]. We found limited evidence of cultivar or atmospheric [CO2 ] effects on plant-fixed carbon transfer to the mycorrhizal fungi. Our results suggest that AMF will continue to provide a route for nutrient uptake by wheat in the future, despite predicted rises in atmospheric [CO2 ]. Consideration should therefore be paid to cultivar-specific AMF receptivity and function in the development of climate smart germplasm for the future.
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Affiliation(s)
- Tom J. Thirkell
- Centre for Plant SciencesSchool of BiologyFaculty of Biological SciencesUniversity of LeedsLeedsUK
| | - Daria Pastok
- Centre for Plant SciencesSchool of BiologyFaculty of Biological SciencesUniversity of LeedsLeedsUK
| | - Katie J. Field
- Centre for Plant SciencesSchool of BiologyFaculty of Biological SciencesUniversity of LeedsLeedsUK
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22
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Liu J, Ridgway HJ, Jones EE. Apple endophyte community is shaped by tissue type, cultivar and site and has members with biocontrol potential against Neonectria ditissima. J Appl Microbiol 2020; 128:1735-1753. [PMID: 31981438 DOI: 10.1111/jam.14587] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Revised: 01/15/2020] [Accepted: 01/17/2020] [Indexed: 11/29/2022]
Abstract
AIMS This research aimed to identify factors influencing endophyte community structure in apple shoots and the bioactivity of cultured representatives against the fungal pathogen Neonectria ditissima. METHODS AND RESULTS The endophyte community in leaves and stems of the apple cultivars 'Royal Gala' and 'Braeburn' were analysed by a cultivation-independent method (PCR-DGGE) which showed that tissue type, cultivar and site were determinant factors, with the endophyte taxa in 'Royal Gala' more variable than that in 'Braeburn', with leaf endophyte communities typically differing from stems in both cultivars. Seasonal (spring vs autumn) and regional (Nelson vs Hawke's Bay) variations were not obvious in woody stems. A collection of 783 bacterial and 87 fungal endophytes were recovered from leaves and stems of 'Royal Gala', 'Braeburn', 'Scilate' and/or 'Scifresh' from Nelson (nine sites) and Hawke's Bay (five sites) in spring and from Nelson (three sites) in autumn. A dual culture plating assay was used to test their ability to inhibit the mycelial growth of N. ditissima. Thirteen bacterial (mean of percent inhibition ≥20%) and 17 fungal isolates were antagonistic towards N. ditissima. These isolates belonged to the bacterial genera Bacillus and Pseudomonas, and fungal genera Chaetomium, Epicoccum, Biscogniauxia, Penicillium, Diaporthe, Phlyctema and two unidentified fungal isolates. CONCLUSIONS Endophyte communities in apple shoots were determined by tissue type, cultivar and site. Endophytic bacterial and fungal isolates inhibiting N. ditissima growth in vitro were found. SIGNIFICANCE AND IMPACT OF THE STUDY These results provided new evidence of factors influencing apple endophyte community in New Zealand. Endophytes with potential to reduce N. ditissima infection were identified, with the potential to be developed into a biocontrol strategy for European canker.
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Affiliation(s)
- J Liu
- Department of Pest-management and Conservation, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, Canterbury, New Zealand
| | - H J Ridgway
- Department of Pest-management and Conservation, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, Canterbury, New Zealand.,The New Zealand Institute for Plant and Food Research Ltd, Christchurch, New Zealand
| | - E E Jones
- Department of Pest-management and Conservation, Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, Canterbury, New Zealand
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Tian L, Chang C, Ma L, Nasir F, Zhang J, Li W, Tran LSP, Tian C. Comparative study of the mycorrhizal root transcriptomes of wild and cultivated rice in response to the pathogen Magnaporthe oryzae. RICE (NEW YORK, N.Y.) 2019; 12:35. [PMID: 31076886 PMCID: PMC6510786 DOI: 10.1186/s12284-019-0287-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Accepted: 04/09/2019] [Indexed: 05/21/2023]
Abstract
BACKGROUND Rice, which serves as a staple food for more than half of the world's population, is very susceptible to the pathogenic fungus, Magnaporthe oryzae. However, common wild rice (Oryza rufipogon), which is the ancestor of Asian cultivated rice (O. sativa), has significant potential as a genetic source of resistance to M. oryzae. Recent studies have shown that the domestication of rice has altered its relationship to symbiotic arbuscular mycorrhizae. A comparative response of wild and domestic rice inhabited by mycorrhizae to infection by M. oryzae has not been documented. RESULTS In the current study, roots of wild and cultivated rice colonized with the arbuscular mycorrhizal (AM) fungus (AMF) Rhizoglomus intraradices were used to compare the transcriptomic responses of the two species to infection by M. oryzae. Phenotypic analysis indicated that the colonization of wild and cultivated rice with R. intraradices improved the resistance of both genotypes to M. oryzae. Wild AM rice, however, was more resistant to M. oryzae than the cultivated AM rice, as well as nonmycorrhizal roots of wild rice. Transcriptome analysis indicated that the mechanisms regulating the responses of wild and cultivated AM rice to M. oryzae invasion were significantly different. The expression of a greater number of genes was changed in wild AM rice than in cultivated AM rice in response to the pathogen. Both wild and cultivated AM rice exhibited a shared response to M. oryzae which included genes related to the auxin and salicylic acid pathways; all of these play important roles in pathogenesis-related protein synthesis. In wild AM rice, secondary metabolic and biotic stress-related analyses indicated that the jasmonic acid synthesis-related α-linolenic acid pathway, the phenolic and terpenoid pathways, as well as the phenolic and terpenoid syntheses-related mevalonate (MVA) pathway were more affected by the pathogen. Genes related to these pathways were more significantly enriched in wild AM rice than in cultivated AM rice in response to M. oryzae. On the other hand, genes associated with the 'brassinosteroid biosynthesis' were more enriched in cultivated AM rice. CONCLUSIONS The AMF R. intraradices-colonized rice plants exhibited greater resistance to M. oryzae than non-AMF-colonized plants. The findings of the current study demonstrate the potential effects of crop domestication on the benefits received by the host via root colonization with AMF(s), and provide new information on the underlying molecular mechanisms. In addition, results of this study can also help develop guidelines for the applications of AMF(s) when planting rice.
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Affiliation(s)
- Lei Tian
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102 China
| | - Chunling Chang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102 China
- University of Chinese Academy of Sciences, Beijing, 100049 China
| | - Lina Ma
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102 China
- University of Chinese Academy of Sciences, Beijing, 100049 China
| | - Fahad Nasir
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102 China
- School of Life Sciences, Northeast Normal University, Changchun City, Jilin China
| | - Jianfeng Zhang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102 China
- College of Life Science, Jilin Agricultural University, Changchun, Jilin China
| | - Weiqiang Li
- Stress Adaptation Research Unit, RIKEN Center for Sustainable Resource Science, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, 230-0045 Japan
| | - Lam-Son Phan Tran
- Stress Adaptation Research Unit, RIKEN Center for Sustainable Resource Science, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, 230-0045 Japan
- Institute of Research and Development, Duy Tan University, 03 Quang Trung, Da Nang, 550000 Vietnam
| | - Chunjie Tian
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, 130102 China
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