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Khan M, Alkhathlan HZ, Adil SF, Shaik MR, Siddiqui MRH, Khan M, Khan ST. Secondary metabolite profile of Streptomyces spp. changes when grown with the sub-lethal concentration of silver nanoparticles: possible implication in novel compound discovery. Antonie Van Leeuwenhoek 2024; 117:95. [PMID: 38967683 DOI: 10.1007/s10482-024-01991-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Accepted: 06/18/2024] [Indexed: 07/06/2024]
Abstract
The decline of new antibiotics and the emergence of multidrug resistance in pathogens necessitates a revisit of strategies used for lead compound discovery. This study proposes to induce the production of bioactive compounds with sub-lethal concentrations of silver nanoparticles (Ag-NPs). A total of Forty-two Actinobacteria isolates from four Saudi soil samples were grown with and without sub-lethal concentration of Ag-NPs (50 µg ml-1). The spent broth grown with Ag-NPs, or without Ag-NPs were screened for antimicrobial activity against four bacteria. Interestingly, out of 42 strains, broths of three strains grown with sub-lethal concentration of Ag-NPs exhibit antimicrobial activity against Staphylococcus aureus and Micrococcus luteus. Among these, two strains S4-4 and S4-21 identified as Streptomyces labedae and Streptomyces tirandamycinicus based on 16S rRNA gene sequence were selected for detailed study. The change in the secondary metabolites profile in the presence of Ag-NPs was evaluated using GC-MS and LC-MS analyses. Butanol extracts of spent broth grown with Ag-NPs exhibit strong antimicrobial activity against M. luteus and S. aureus. While the extracts of the controls with the same concentration of Ag-NPs do not show any activity. GC-analysis revealed a clear change in the secondary metabolite profile when grown with Ag-NPs. Similarly, the LC-MS patterns also differ significantly. Results of this study, strongly suggest that sub-lethal concentrations of Ag-NPs influence the production of secondary metabolites by Streptomyces. Besides, LC-MS results identified possible secondary metabolites, associated with oxidative stress and antimicrobial activities. This strategy can be used to possibly induce cryptic biosynthetic gene clusters for the discovery of new lead compounds.
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Affiliation(s)
- Merajuddin Khan
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Hamad Z Alkhathlan
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Syed Farooq Adil
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Mohammed Rafi Shaik
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | | | - Mujeeb Khan
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia.
| | - Shams Tabrez Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Science, Aligarh Muslim University, Aligarh, U.P., 202002, India.
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Mucheye Y, Reddythota D. Investigation of the impact of municipal solid waste disposal site leachate on surface water resources in Hosanna Town, Ethiopia. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:44049-44067. [PMID: 38922466 DOI: 10.1007/s11356-024-34017-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 06/12/2024] [Indexed: 06/27/2024]
Abstract
Surface water resources are the most precious, yet they are also the most vulnerable to pollution. Consequently, maintaining the sustainability of water supplies is critical for livestock support to achieve SDG goals. Landfill leachate poses a significant threat to water resources in developing countries. This study aims to determine how the Hosanna town landfill site affects the Jewie River by analysing the quality of the Alela and Ajew streams and the landfill leachate in both wet and dry seasons. Furthermore, assess the suitability of the water quality for agricultural purposes. The leachate pollution index (LPI), Canadian Council Member of the Environment Water Quality Index (CCMEWQI), and irrigation water quality indices (IWQI) were computed for both seasons using two composite leachate samples and five flow-pace composite river samples. In the wet season, the leachate pollution indices for L1 and L2 ranged from 20.87 to 22.47, respectively. During the dry season, the leachate pollutant index of L1 and L2 was found to be 24.42 and 27.98. Only the Ajew River stream was affected during the dry season because the landfill site is only 46 m away. Both the Ajew and Alela River streams are infested during the rainy season. Irrigation index concentrations revealed that the river water is suitable for cultivation. The early stages of landfill waste maturation are evident from the LPI results. Relocating the dump site is necessary to safeguard water resources because leachate has entered the river streams.
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Affiliation(s)
- Yibeltal Mucheye
- Faculty of Water Supply and Environmental Engineering, Arba Minch Water Technology Institute, Arba Minch University, Arba Minch, SNNPR, Ethiopia
| | - Daniel Reddythota
- Faculty of Water Supply and Environmental Engineering, Arba Minch Water Technology Institute, Arba Minch University, Arba Minch, SNNPR, Ethiopia.
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3
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George NA, Zhou Z, Anantharaman K, Hug LA. Discarded diversity: Novel megaphages, auxiliary metabolic genes, and virally encoded CRISPR-Cas systems in landfills. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.30.596742. [PMID: 38854013 PMCID: PMC11160803 DOI: 10.1101/2024.05.30.596742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
Background Viruses are the most abundant microbial entity on the planet, impacting microbial community structure and ecosystem services. Despite outnumbering Bacteria and Archaea by an order of magnitude, viruses have been comparatively underrepresented in reference databases. Metagenomic examinations have illustrated that viruses of Bacteria and Archaea have been specifically understudied in engineered environments. Here we employed metagenomic and computational biology methods to examine the diversity, host interactions, and genetic systems of viruses predicted from 27 samples taken from three municipal landfills across North America. Results We identified numerous viruses that are not represented in reference databases, including the third largest bacteriophage genome identified to date (~678 kbp), and note a cosmopolitan diversity of viruses in landfills that are distinct from viromes in other systems. Host-virus interactions were examined via host CRISPR spacer to viral protospacer mapping which captured hyper-targeted viral populations and six viral populations predicted to infect across multiple phyla. Virally-encoded auxiliary metabolic genes (AMGs) were identified with the potential to augment hosts' methane, sulfur, and contaminant degradation metabolisms, including AMGs not previously reported in literature. CRISPR arrays and CRISPR-Cas systems were identified from predicted viral genomes, including the two largest bacteriophage genomes to contain these genetic features. Some virally encoded Cas effector proteins appear distinct relative to previously reported Cas systems and are interesting targets for potential genome editing tools. Conclusions Our observations indicate landfills, as heterogeneous contaminated sites with unique selective pressures, are key locations for diverse viruses and atypical virus-host dynamics.
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Affiliation(s)
- Nikhil A. George
- Department of Biology, University of Waterloo, Waterloo ON, Canada
| | - Zhichao Zhou
- Department of Bacteriology, University of Wisconsin – Madison, Madison, WI, USA
| | | | - Laura A. Hug
- Department of Biology, University of Waterloo, Waterloo ON, Canada
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4
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Lienhart PH, Rohra V, Clement C, Toppen LC, DeCola AC, Rizzo DM, Scarborough MJ. Landfill intermediate cover soil microbiomes and their potential for mitigating greenhouse gas emissions revealed through metagenomics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 925:171697. [PMID: 38492594 DOI: 10.1016/j.scitotenv.2024.171697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 03/09/2024] [Accepted: 03/11/2024] [Indexed: 03/18/2024]
Abstract
Landfills are a major source of anthropogenic methane emissions and have been found to produce nitrous oxide, an even more potent greenhouse gas than methane. Intermediate cover soil (ICS) plays a key role in reducing methane emissions but may also result in nitrous oxide production. To assess the potential for microbial methane oxidation and nitrous oxide production, long sequencing reads were generated from ICS microbiome DNA and reads were functionally annotated for 24 samples across ICS at a large landfill in New York. Further, incubation experiments were performed to assess methane consumption and nitrous oxide production with varying amounts of ammonia supplemented. Methane was readily consumed by microbes in the composite ICS and all incubations with methane produced small amounts of nitrous oxide even when ammonia was not supplemented. Incubations without methane produced significantly less nitrous oxide than those incubated with methane. In incubations with methane added, the observed specific rate of methane consumption was 0.776 +/- 0.055 μg CH4 g dry weight (DW) soil-1 h-1 and the specific rate of nitrous oxide production was 3.64 × 10-5 +/- 1.30 × 10-5 μg N2O g DW soil-1 h-1. The methanotrophs Methylobacter and an unclassified genus within the family Methlyococcaceae were present in the original ICS samples and the incubation samples, and their abundance increased during incubations with methane. Genes encoding particulate methane monooxygenase/ ammonia monooxygenase (pMMO) were much more abundant than genes encoding soluble methane monooxygenase (sMMO) across the landfill ICS. Genes encoding proteins that convert hydroxylamine to nitrous oxide were not highly abundant in the ICS or incubation metagenomes. In total, these results suggest that although ammonia oxidation via methanotrophs may result in low levels of nitrous oxide production, ICS microbial communities have the potential to greatly reduce the overall global warming potential of landfill emissions.
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Affiliation(s)
- Peyton H Lienhart
- Department of Civil and Environmental Engineering, University of Vermont, Burlington, VT, United States
| | - Venus Rohra
- Department of Civil and Environmental Engineering, University of Vermont, Burlington, VT, United States
| | - Courtney Clement
- Department of Microbiology, Oregon State University, Corvallis, OR, United States
| | - Lucinda C Toppen
- Department of Civil and Environmental Engineering, University of Vermont, Burlington, VT, United States.
| | - Amy C DeCola
- Department of Civil and Environmental Engineering, University of Vermont, Burlington, VT, United States
| | - Donna M Rizzo
- Department of Civil and Environmental Engineering, University of Vermont, Burlington, VT, United States; Gund Institute for Environment, University of Vermont, Burlington, VT, United States.
| | - Matthew J Scarborough
- Department of Civil and Environmental Engineering, University of Vermont, Burlington, VT, United States; Gund Institute for Environment, University of Vermont, Burlington, VT, United States.
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5
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Smith SK, Weaver JE, Ducoste JJ, de Los Reyes FL. Microbial community assembly in engineered bioreactors. WATER RESEARCH 2024; 255:121495. [PMID: 38554629 DOI: 10.1016/j.watres.2024.121495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 01/10/2024] [Accepted: 03/19/2024] [Indexed: 04/02/2024]
Abstract
Microbial community assembly (MCA) processes that shape microbial communities in environments are being used to analyze engineered bioreactors such as activated sludge systems and anaerobic digesters. The goal of studying MCA is to be able to understand and predict the effect of design and operation procedures on bioreactor microbial composition and function. Ultimately, this can lead to bioreactors that are more efficient, resilient, or resistant to perturbations. This review summarizes the ecological theories underpinning MCA, evaluates MCA analysis methods, analyzes how these MCA-based methods are applied to engineered bioreactors, and extracts lessons from case studies. Furthermore, we suggest future directions in MCA research in engineered bioreactor systems. The review aims to provide insights and guidance to the growing number of environmental engineers who wish to design and understand bioreactors through the lens of MCA.
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Affiliation(s)
- Savanna K Smith
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC, USA
| | - Joseph E Weaver
- School of Engineering, Newcastle University, Newcastle upon Tyne, UK
| | - Joel J Ducoste
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC, USA
| | - Francis L de Los Reyes
- Department of Civil, Construction, and Environmental Engineering, North Carolina State University, Raleigh, NC, USA.
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6
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Singh P, Lau CSS, Siah SY, Chua KO, Ting ASY. Microbial degradation of low-density polyethylene, polyethylene terephthalate, and polystyrene by novel isolates from plastic-polluted environment. Arch Microbiol 2024; 206:188. [PMID: 38519709 DOI: 10.1007/s00203-024-03895-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 02/10/2024] [Accepted: 02/11/2024] [Indexed: 03/25/2024]
Abstract
Biodegradation is an eco-friendly measure to address plastic pollution. This study screened four bacterial isolates that were capable of degrading recalcitrant polymers, i.e., low-density polyethylene, polyethylene terephthalate, and polystyrene. The unique bacterial isolates were obtained from plastic polluted environment. Dermacoccus sp. MR5 (accession no. OP592184) and Corynebacterium sp. MR10 (accession no. OP536169) from Malaysian mangroves and Bacillus sp. BS5 (accession no. OP536168) and Priestia sp. TL1 (accession no. OP536170) from a sanitary landfill. The four isolates showed a gradual increase in the microbial count and the production of laccase and esterase enzymes after 4 weeks of incubation with the polymers (independent experiment set). Bacillus sp. BS5 produced the highest laccase 15.35 ± 0.19 U/mL and showed the highest weight loss i.e., 4.84 ± 0.6% for PS. Fourier transform infrared spectroscopy analysis confirmed the formation of carbonyl and hydroxyl groups as a result of oxidation reactions by enzymes. Liquid chromatography-mass spectrometry analysis showed the oxidation of the polymers to small molecules (alcohol, ethers, and acids) assimilated by the microbes during the degradation. Field emission scanning electron microscopy showed bacterial colonization, biofilm formation, and surface erosion on the polymer surface. The result provided significant insight into enzyme activities and the potential of isolates to target more than one type of polymer for degradation.
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Affiliation(s)
- Pooja Singh
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia
| | - Claudeen Sze Siang Lau
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia
| | - Sze Yin Siah
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia
| | - Kah Ooi Chua
- Centre for Research in Biotechnology for Agriculture (CEBAR), University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Adeline Su Yien Ting
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, 47500, Bandar Sunway, Selangor, Malaysia.
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Beneduce L, Piergiacomo F, Limoni PP, Zuffianò LE, Polemio M. Microbial, chemical, and isotopic monitoring integrated approach to assess potential leachate contamination of groundwater in a karstic aquifer (Apulia, Italy). ENVIRONMENTAL MONITORING AND ASSESSMENT 2024; 196:312. [PMID: 38413499 PMCID: PMC10899417 DOI: 10.1007/s10661-024-12477-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 02/17/2024] [Indexed: 02/29/2024]
Abstract
Landfill sites are subjected to long-term risks of accidental spill of leachate through the soil and consequential contamination of the groundwater. Wide areas surrounding the landfill can seriously be threatened with possible consequences to human health and the environment. Given the potential impact of different coexisting anthropic pollution sources (i.e., agriculture and cattle farming) on the same site, the perturbation of the groundwater quality may be due to multiple factors. Therefore, it is a challenging issue to correctly establish the pollution source of an aquifer where the landfill is not isolated from other anthropic land uses, especially in the case of a karstic coastal aquifer. The present study is aimed at setting in place an integrated environmental monitoring system that included microbiological, chemical, and isotope methods to evaluate potential groundwater pollution in a landfill district in the south of Italy located in Murgia karstic aquifer. Conventional (microbial plate count and physical-chemical analyses) and advanced methods (PCR-ARISA, isotope analysis of δ18O, δ2H, 3H, δ 13C, δ 15N-NO3-, and δ 18O-NO3-) were included in the study. Through data integration, it was possible to reconstruct a scenario in which agriculture and other human activities along with seawater intrusion in the karst aquifer were the main drivers of groundwater pollution at the monitored site. The microbiological, chemical, and isotope results confirmed the absence of leachate effects on groundwater quality, showing the decisive role of fertilizers as potential nitrate sources. The next goal will be to extend long-term integrated monitoring to other landfill districts, with different geological and hydrogeological characteristics and including different sources of pollution, to support the ecological restoration of landfills.
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Affiliation(s)
- L Beneduce
- Department of the Science of Agriculture, Food, Natural Resources and Engineering (DAFNE), University of Foggia, Via Napoli, 25 -71122, Foggia, Italy
| | - F Piergiacomo
- Present address: Faculty of Science and Technology, Free University of Bolzano-Bozen, Piazza Università 1, 39100, Bolzano-Bozen, Italy
| | - P P Limoni
- CNR-IRPI, National Research Council, Research Institute for Hydrogeological Protection, Via Amendola 122/I, 70126, Bari, Italy
| | - L E Zuffianò
- CNR-IRPI, National Research Council, Research Institute for Hydrogeological Protection, Via Amendola 122/I, 70126, Bari, Italy.
| | - M Polemio
- CNR-IRPI, National Research Council, Research Institute for Hydrogeological Protection, Via Amendola 122/I, 70126, Bari, Italy
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8
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Tolaymat T, Robey N, Krause M, Larson J, Weitz K, Parvathikar S, Phelps L, Linak W, Burden S, Speth T, Krug J. A critical review of perfluoroalkyl and polyfluoroalkyl substances (PFAS) landfill disposal in the United States. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167185. [PMID: 37734620 PMCID: PMC10842600 DOI: 10.1016/j.scitotenv.2023.167185] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 09/15/2023] [Accepted: 09/16/2023] [Indexed: 09/23/2023]
Abstract
Landfills manage materials containing per- and polyfluoroalkyl substances (PFAS) from municipal solid waste (MSW) and other waste streams. This manuscript summarizes state and federal initiatives and critically reviews peer-reviewed literature to define best practices for managing these wastes and identify data gaps to guide future research. The objective is to inform stakeholders about waste-derived PFAS disposed of in landfills, PFAS emissions, and the potential for related environmental impacts. Furthermore, this document highlights data gaps and uncertainties concerning the fate of PFAS during landfill disposal. Most studies on this topic measured PFAS in liquid landfill effluent (leachate); comparatively fewer have attempted to estimate PFAS loading in landfills or other effluent streams such as landfill gas (LFG). In all media, the reported total PFAS heavily depends on waste types and the number of PFAS included in the analytical method. Early studies which only measured a small number of PFAS, predominantly perfluoroalkyl acids (PFAAs), likely report a significant underestimation of total PFAS. Major findings include relationships between PFAS effluent and landfill conditions - biodegradable waste increases PFAS transformation and leaching. Based on the results of multiple studies, it is estimated that 84% of PFAS loading to MSW landfills (7.2 T total) remains in the waste mass, while 5% leaves via LFG and 11% via leachate on an annual basis. The environmental impact of landfill-derived PFAS has been well-documented. Additional research is needed on PFAS in landfilled construction and demolition debris, hazardous, and industrial waste in the US.
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Affiliation(s)
- Thabet Tolaymat
- The Center for Environmental Solutions and Emergency Management, Office of Research and Development, U.S. Environmental Protection Agency, Cincinnati, OH, USA.
| | - Nicole Robey
- Innovative Technical Solutions, Gainesville, FL, USA
| | - Max Krause
- The Center for Environmental Solutions and Emergency Management, Office of Research and Development, U.S. Environmental Protection Agency, Cincinnati, OH, USA
| | - Judd Larson
- RTI International, Research Triangle Park, NC, USA
| | - Keith Weitz
- RTI International, Research Triangle Park, NC, USA
| | | | - Lara Phelps
- The Center for Environmental Measurements and Modeling, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, NC, USA
| | - William Linak
- The Center for Environmental Measurements and Modeling, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, NC, USA
| | - Susan Burden
- Office of Science Advisor, Policy and Engagement, Office of Research and Development, U.S. Environmental Protection Agency, Washington, DC, USA
| | - Tom Speth
- The Center for Environmental Solutions and Emergency Management, Office of Research and Development, U.S. Environmental Protection Agency, Cincinnati, OH, USA
| | - Jonathan Krug
- The Center for Environmental Measurements and Modeling, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, NC, USA
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Rohrbach S, Gkoutselis G, Hink L, Weig AR, Obst M, Diekmann A, Ho A, Rambold G, Horn MA. Microplastic polymer properties as deterministic factors driving terrestrial plastisphere microbiome assembly and succession in the field. Environ Microbiol 2023; 25:2681-2697. [PMID: 36224114 DOI: 10.1111/1462-2920.16234] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 10/04/2022] [Indexed: 11/28/2022]
Abstract
Environmental microplastic (MP) is ubiquitous in aquatic and terrestrial ecosystems providing artificial habitats for microbes. Mechanisms of MP colonization, MP polymer impacts, and effects on soil microbiomes are largely unknown in terrestrial systems. Therefore, we experimentally tested the hypothesis that MP polymer type is an important deterministic factor affecting MP community assembly by incubating common MP polymer types in situ in landfill soil for 14 months. 16S rRNA gene amplicon sequencing indicated that MP polymers have specific impacts on plastisphere microbiomes, which are subsets of the soil microbiome. Chloroflexota, Gammaproteobacteria, certain Nitrososphaerota, and Nanoarchaeota explained differences among MP polymers and time points. Plastisphere microbial community composition derived from different MP diverged over time and was enriched in potential pathogens. PICRUSt predictions of pathway abundances and quantitative PCR of functional marker genes indicated that MP polymers exerted an ambivalent effect on genetic potentials of biogeochemical cycles. Overall, the data indicate that (i) polymer type as deterministic factor rather than stochastic factors drives plastisphere community assembly, (ii) MP impacts greenhouse gas metabolism, xenobiotic degradation and pathogen distribution, and (iii) MP serves as an ideal model system for studying fundamental questions in microbial ecology such as community assembly mechanisms in terrestrial environments.
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Affiliation(s)
- Stephan Rohrbach
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
| | | | - Linda Hink
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
| | - Alfons R Weig
- Genomics and Bioinformatics, University of Bayreuth, Bayreuth, Germany
| | - Martin Obst
- Experimental Biogeochemistry, BayCEER, University of Bayreuth, Bayreuth, Germany
| | - Astrid Diekmann
- Deutsches Institut für Kautschuktechnologie e.V., Hannover, Germany
| | - Adrian Ho
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
| | - Gerhard Rambold
- Department of Mycology, University of Bayreuth, Bayreuth, Germany
| | - Marcus A Horn
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
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10
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Priyadarsini M, Kushwaha J, Pandey KP, Rani J, Dhoble AS. Application of flow cytometry for rapid, high-throughput, multiparametric analysis of environmental microbiomes. J Microbiol Methods 2023; 214:106841. [PMID: 37832922 DOI: 10.1016/j.mimet.2023.106841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 10/06/2023] [Accepted: 10/08/2023] [Indexed: 10/15/2023]
Abstract
Quantification of the abundance and understanding of the dynamics of the microbial communities is essential to establish a basis for microbiome characterization. The conventional techniques used for the quantification of microbes are complicated and time-consuming. With scientific advancement, many techniques evolved and came into account. Among them, flow cytometry is a robust, high-throughput technique through which microbial dynamics, morphology, microbial distribution, physiological characteristics, and many more attributes can be studied in a high-throughput manner with comparatively less time and resources. Flow cytometry, when combined with other omics-based methods, offers a rapid and efficient platform to analyze and understand the composition of microbiome at the cellular level. The microbial diversity observed through flow cytometry will not be equivalent to that obtained by sequencing methods, but this integrated approach holds great potential for high throughput characterization of microbiomes. Flow cytometry is regarded as an established characterization tool in haematology, oncology, immunology, and medical microbiology research; however, its application in environmental microbiology is yet to be explored. This comprehensive review aims to delve into the diverse environmental applications of flow cytometry across various domains, including but not limited to bioremediation, landfills, anaerobic digestion, industrial bioprocesses, water quality regulation, and soil quality regulation. By conducting an in-depth analysis, this article seeks to shed light on the potential benefits and challenges associated with the utilization of flow cytometry in addressing environmental concerns.
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Affiliation(s)
- Madhumita Priyadarsini
- School of Biochemical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
| | - Jeetesh Kushwaha
- School of Biochemical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
| | - Kailash Pati Pandey
- School of Biochemical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
| | - Jyoti Rani
- School of Biochemical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India
| | - Abhishek S Dhoble
- School of Biochemical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, Uttar Pradesh, India.
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11
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Basile A, Zampieri G, Kovalovszki A, Karkaria B, Treu L, Patil KR, Campanaro S. Modelling of microbial interactions in anaerobic digestion: from black to glass box. Curr Opin Microbiol 2023; 75:102363. [PMID: 37542746 DOI: 10.1016/j.mib.2023.102363] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 05/20/2023] [Accepted: 07/10/2023] [Indexed: 08/07/2023]
Abstract
Anaerobic and microaerophilic environments are pervasive in nature, providing essential contributions to the maintenance of human health, biogeochemical cycles and the Earth's climate. These ecological niches are characterised by low free oxygen and oxidants, or lack thereof. Under these conditions, interactions between species are essential for supporting the growth of syntrophic species and maintaining thermodynamic feasibility of anaerobic fermentation. Kinetic models provide a simplified view of complex metabolic networks, while genome-scale metabolic models and flux-balance analysis (FBA) aim to unravel these systems as a whole. The target of this review is to outline the main similarities, differences and challenges associated with kinetic and metabolic modelling, and describe state-of-the-art modelling practices for studying syntrophies in the anaerobic digestion (AD) case study.
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Affiliation(s)
- Arianna Basile
- Medical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK.
| | - Guido Zampieri
- Department of Biology, University of Padova, Via U. Bassi 58/b, 35121 Padova, Italy
| | - Adam Kovalovszki
- Department of Environmental and Resource Engineering, Technical University of Denmark, Building 115, Bygningstorvet, 2800 Kgs. Lyngby, Denmark
| | - Behzad Karkaria
- Medical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK
| | - Laura Treu
- Department of Biology, University of Padova, Via U. Bassi 58/b, 35121 Padova, Italy.
| | - Kiran Raosaheb Patil
- Medical Research Council Toxicology Unit, University of Cambridge, Cambridge, UK
| | - Stefano Campanaro
- Department of Biology, University of Padova, Via U. Bassi 58/b, 35121 Padova, Italy
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12
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Mondal T, Choudhury M, Kundu D, Dutta D, Samanta P. Landfill: An eclectic review on structure, reactions and remediation approach. WASTE MANAGEMENT (NEW YORK, N.Y.) 2023; 164:127-142. [PMID: 37054538 DOI: 10.1016/j.wasman.2023.03.034] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 02/14/2023] [Accepted: 03/24/2023] [Indexed: 06/19/2023]
Abstract
Since the enactment of the Clean Water Act (1972), which was supplemented by increased accountability under Resource Conservation and Recovery Act (RCRA) Subtitle D (1991) and the Clean Air Act Amendments (1996), landfills have indeed been widely used all around the world for treating various wastes. The landfill's biological and biogeochemical processes are believed to be originated about 2 to 4 decades ago. Scopus and web of Science based bibliometric study reveals that there are few papers available in scientific domain. Further, till today not a single paper demonstrated the detailed landfills heterogenicity, chemistry and microbiological processes and their associated dynamics in a combined approach. Accordingly, the paper addresses the recent applications of cutting-edge biogeochemical and biological methods adopted by different countries to sketch an emerging perspective of landfill biological and biogeochemical reactions and dynamics. Additionally, the significance of several regulatory factors controlling the landfill's biogeochemical and biological processes is highlighted. Finally, this article emphasizes the future opportunities for integrating advanced techniques to explain landfill chemistry explicitly. In conclusion, this paper will provide a comprehensive vision of the diverse dimensions of landfill biological and biogeochemical reactions and dynamics to the scientific world and policymakers.
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Affiliation(s)
- Tridib Mondal
- Department of Chemistry, Sukanta Mahavidyalaya, University of North Bengal, Dhupguri 735210, West Bengal, India
| | - Moharana Choudhury
- Environmental Research and Management Division, Voice of Environment (VoE), Guwahati - 781034, Assam, India.
| | - Debajyoti Kundu
- Waste Re-processing Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur 440 020, India
| | - Deblina Dutta
- Department of Environmental Science and Engineering, SRM University-AP, Amaravati, Andhra Pradesh 522 240, India
| | - Palas Samanta
- Department of Environmental Science, Sukanta Mahavidyalaya, University of North Bengal, Dhupguri 735210, West Bengal, India.
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13
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Wang YN, Wang Q, Li Y, Wang H, Gao Y, Sun Y, Wang B, Bian R, Li W, Zhan M. Impact of incineration slag co-disposed with municipal solid waste on methane production and methanogens ecology in landfills. BIORESOURCE TECHNOLOGY 2023; 377:128978. [PMID: 36990329 DOI: 10.1016/j.biortech.2023.128978] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 03/24/2023] [Accepted: 03/26/2023] [Indexed: 06/19/2023]
Abstract
Co-landfill of incineration slag and municipal solid waste (MSW) is a main method for disposal of slag, and it has the potential of promoting methane (CH4) production and accelerating landfill stabilization. Four simulated MSW landfill columns loaded with different amount of slag (A, 0%; B, 5%; C, 10%; D, 20%) were established, and the CH4 production characteristics and methanogenic mechanisms were investigated. The maximum CH4 concentration in columns A, B, C and D was 10.8%, 23.3%, 36.3% and 34.3%, respectively. Leachate pH and refuse pH were positively correlated with CH4 concentration. Methanosarcina was the dominant genus with abundance of 35.1%∼75.2% and it was positively correlated with CH4 concentration. CO2-reducing and acetoclastic methanogenesis were the main types of methanogenesis pathway, and the methanogenesis functional abundance increased with slag proportion during stable methanogenesis process. This research can help understanding the impact of slag on CH4 production characteristics and microbiological mechanisms in landfills.
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Affiliation(s)
- Ya-Nan Wang
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Qingzhao Wang
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Yahui Li
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Huawei Wang
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China.
| | - Ying Gao
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Yingjie Sun
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Bingpeng Wang
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Rongxing Bian
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Weihua Li
- Qingdao Solid Waste Pollution Control and Resource Engineering Research Center, Qingdao University of Technology, School of Environmental and Municipal Engineering, Qingdao, China
| | - Meili Zhan
- Qingdao Solid Waste Disposal Co LTD, China
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14
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Vavilin VA, Lokshina LY. Carbon and hydrogen dynamic isotope equations are used to describe the dominant processes of waste biodegradation: Effect of aeration in methanogenic phase of the landfill. WASTE MANAGEMENT (NEW YORK, N.Y.) 2023; 166:280-293. [PMID: 37207589 DOI: 10.1016/j.wasman.2023.04.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 04/08/2023] [Accepted: 04/14/2023] [Indexed: 05/21/2023]
Abstract
The sequence of microbiological processes occurring during the decomposition of fresh and old organic wastes from landfills is analyzed using the developed dynamic models, which are verified on the basis of experimental data previously obtained in anaerobic and aerobic laboratory reactors. The models are based on the material balances of the heavy and light isotopes of carbon and hydrogen during the biodegradation of cellulosic waste as a relatively poorly degradable substrate. According to the models, under anaerobic conditions, dissolved carbon dioxide is a substrate for hydrogenotrophic methanogenesis, which leads to an increase in the isotope signature of carbon in carbon dioxide and its subsequent stabilization. After the introduction of aeration, methane production ceases, and from that time on, carbon dioxide remains only a product of cellulose and acetate oxidation, which causes a significant decrease in the isotopic signature of carbon in carbon dioxide. The dynamics of the deuterium content in the leachate water is described as a consequence of the rate of its entry into and exit from the two (upper and lower) compartments of the vertical reactors, as well as the rates of its consumption and formation during microbiological reactions. According to the models, in the anaerobic case, the water is first enriched with deuterium due to acidogenesis and syntrophic acetate oxidation and then diluted with deuterium-depleted water, which is continuously fed to the top of the reactors. In the aerobic case, a similar dynamic is simulated.
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Affiliation(s)
- Vasily A Vavilin
- Water Problems Institute, Russian Academy of Sciences, 3 Gubkina str., Moscow 119333, Russian Federation.
| | - Lyudmila Y Lokshina
- Water Problems Institute, Russian Academy of Sciences, 3 Gubkina str., Moscow 119333, Russian Federation.
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15
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Shen D, Zhou H, Jin Z, Yang W, Ci M, Long Y, Hu L. Sulfate reduction behavior in pressure-bearing leachate saturated zone. J Environ Sci (China) 2023; 126:545-555. [PMID: 36503780 DOI: 10.1016/j.jes.2022.04.032] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Revised: 04/18/2022] [Accepted: 04/26/2022] [Indexed: 06/17/2023]
Abstract
Attention should be paid to the sulfate reduction behavior in a pressure-bearing leachate saturated zone. In this study, within the relative pressure range of 0-0.6 MPa, the ambient temperature with the highest sulfate reduction rate of 50°C was selected to explore the difference in sulfate reduction behavior in a pressure-bearing leachate saturated zone. The results showed that the sulfate reduction rate might further increase with an increase in pressure; however, owing to the effect of pressure increase, the generated hydrogen sulfide (H2S) could not be released on time, thereby decreasing its highest concentration by approximately 85%, and the duration extended to about two times that of the atmospheric pressure. Microbial community structure and functional gene abundance analyses showed that the community distribution of sulfate-reducing bacteria was significantly affected by pressure conditions, and there was a negative correlation between disulfide reductase B (dsrB) gene abundance and H2S release rate. Other sulfate reduction processes that do not require disulfide reductase A (dsrA) and dsrB genes may be the key pathways affecting the sulfate reduction rate in the pressure-bearing leachate saturated zone. This study improves the understanding of sulfate reduction in landfills as well as provides a theoretical basis for the operation and management of landfills.
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Affiliation(s)
- Dongsheng Shen
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Instrumental Analysis Center, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Haomin Zhou
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Instrumental Analysis Center, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Zhiyuan Jin
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Instrumental Analysis Center, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Wenyi Yang
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Instrumental Analysis Center, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Manting Ci
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Instrumental Analysis Center, Zhejiang Gongshang University, Hangzhou 310012, China
| | - Yuyang Long
- Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, School of Environmental Science and Engineering, Instrumental Analysis Center, Zhejiang Gongshang University, Hangzhou 310012, China.
| | - Lifang Hu
- College of Quality and Safety Engineering, Institution of Industrial Carbon Metrology, China Jiliang University, Hangzhou 310018, China.
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16
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Tveit AT, Söllinger A, Rainer EM, Didriksen A, Hestnes AG, Motleleng L, Hellinger HJ, Rattei T, Svenning MM. Thermal acclimation of methanotrophs from the genus Methylobacter. THE ISME JOURNAL 2023; 17:502-513. [PMID: 36650275 PMCID: PMC10030640 DOI: 10.1038/s41396-023-01363-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 12/30/2022] [Accepted: 01/10/2023] [Indexed: 01/19/2023]
Abstract
Methanotrophs oxidize most of the methane (CH4) produced in natural and anthropogenic ecosystems. Often living close to soil surfaces, these microorganisms must frequently adjust to temperature change. While many environmental studies have addressed temperature effects on CH4 oxidation and methanotrophic communities, there is little knowledge about the physiological adjustments that underlie these effects. We have studied thermal acclimation in Methylobacter, a widespread, abundant, and environmentally important methanotrophic genus. Comparisons of growth and CH4 oxidation kinetics at different temperatures in three members of the genus demonstrate that temperature has a strong influence on how much CH4 is consumed to support growth at different CH4 concentrations. However, the temperature effect varies considerably between species, suggesting that how a methanotrophic community is composed influences the temperature effect on CH4 uptake. To understand thermal acclimation mechanisms widely we carried out a transcriptomics experiment with Methylobacter tundripaludum SV96T. We observed, at different temperatures, how varying abundances of transcripts for glycogen and protein biosynthesis relate to cellular glycogen and ribosome concentrations. Our data also demonstrated transcriptional adjustment of CH4 oxidation, oxidative phosphorylation, membrane fatty acid saturation, cell wall composition, and exopolysaccharides between temperatures. In addition, we observed differences in M. tundripaludum SV96T cell sizes at different temperatures. We conclude that thermal acclimation in Methylobacter results from transcriptional adjustment of central metabolism, protein biosynthesis, cell walls and storage. Acclimation leads to large shifts in CH4 consumption and growth efficiency, but with major differences between species. Thus, our study demonstrates that physiological adjustments to temperature change can substantially influence environmental CH4 uptake rates and that consideration of methanotroph physiology might be vital for accurate predictions of warming effects on CH4 emissions.
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Affiliation(s)
- Alexander T Tveit
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway.
| | - Andrea Söllinger
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Edda Marie Rainer
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Alena Didriksen
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Anne Grethe Hestnes
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Liabo Motleleng
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
| | - Hans-Jörg Hellinger
- University of Vienna, Centre for Microbiology and Environmental Systems Science, Vienna, Austria
- University of Vienna, Doctoral School in Microbiology and Environmental Science, Vienna, Austria
| | - Thomas Rattei
- University of Vienna, Centre for Microbiology and Environmental Systems Science, Vienna, Austria
| | - Mette M Svenning
- Department of Arctic and Marine Biology, UiT The Arctic University of Norway, Tromsø, Norway
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17
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Jin P, Bian S, Yu W, Guo S, Lai C, Wu L, Zhao H, Xiao K, Liang S, Yuan S, Huang L, Wang S, Duan H, Gan F, Chen W, Yang J. Insights into leachate reduction in landfill with different ventilation Rates: Balance of Water, waste physicochemical Properties, and microbial community. WASTE MANAGEMENT (NEW YORK, N.Y.) 2023; 156:118-129. [PMID: 36462342 DOI: 10.1016/j.wasman.2022.11.033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 11/05/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
Ventilation is an efficient approach employed for accelerating stabilization and reducing aftercare of landfill, but its effect on leachate reduction is still elusive. To fill this knowledge gap, five lab-scale landfill reactors with different ventilation rates were established in this study. Suitable ventilation (e.g. 0.25-0.5 L·min-1·kg-1 dry solid of waste (DS)) was beneficial to promoting the stabilization of landfill, which effectively accelerated the degradation of organic matter and reduced water content of landfilled waste. Based on the mass balance of water, the dominant input water was initial water of landfilled waste (more than 94 %), which was partially converted to leachate and evaporated water. Ventilation enhanced the intensity of biochemical reactions heat to increase evaporated water content from 0 to 0.29 t/t DS while reducing the leachate generation significantly from 0.69 to 0.49 t/t DS with the increase of ventilation rate. Besides, the hydrophilic substances, such as humic acid-like substances, in landfilled waste increased, and the surface of the landfilled waste converted from smooth to rough. The reduction of the bound water content has a significant correlation with the degradation of organic matter content (p less than 0.05), which reduced the water-holding capacity of waste. Actinobacteriota and Firmicutes were the key bacterial phyla in the degradation of organic matter to promote bio-heat and evaporation of water, thus reducing leachate production under suitable ventilation conditions. Carbohydrates and amino acids were the main energy metabolism sources of bacteria during the landfill process. This study deepens our understanding of the leachate reduction mechanism in the micro-aerobic landfill.
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Affiliation(s)
- Pan Jin
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Shijie Bian
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Wenbo Yu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China.
| | - Shuai Guo
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Changfei Lai
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Lixin Wu
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Hongyang Zhao
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China
| | - Keke Xiao
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China
| | - Sha Liang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China
| | - Shushan Yuan
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China
| | - Liang Huang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China
| | - Songlin Wang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China
| | - Huabo Duan
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China
| | - Fangmao Gan
- Yangtze Ecology and Environment Co. Ltd, 96 Xudong Street, Wuhan, Hubei 430073, China
| | - Wenran Chen
- Yangtze Ecology and Environment Co. Ltd, 96 Xudong Street, Wuhan, Hubei 430073, China
| | - Jiakuan Yang
- School of Environmental Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei 430074, China; Hubei Provincial Engineering Laboratory of Solid Waste Treatment, Disposal and Recycle Technology, Wuhan, Hubei 430074, China; Hubei Provincial Research Center of Water Quality Safety and Water Pollution Control Engineering Technology, Wuhan, Hubei 430074, China
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18
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El Houari A, Carpenter M, Chaplin D, Golyshin P, McDonald JE. Lutispora saccharofermentans sp. nov., a mesophilic, non-spore-forming bacterium isolated from a lab-scale methanogenic landfill bioreactor digesting anaerobic sludge, and emendation of the genus Lutispora to include species which are non-spore-forming and mesophilic. Int J Syst Evol Microbiol 2023; 73. [PMID: 36748601 DOI: 10.1099/ijsem.0.005683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
A novel anaerobic, mesophilic, non-spore-forming bacterium (strain m25T) was isolated from methanogenic enrichment cultures obtained from a lab-scale methanogenic landfill bioreactor containing anaerobic digester sludge. Cells were Gram-stain-negative, catalase-positive, oxidase-negative, rod-shaped, and motile by means of a flagellum. The genomic DNA G+C content was 40.11 mol%. The optimal NaCl concentration, temperature and pH for growth were 2.5 g l-1, 35 °C and at pH 7.0, respectively. Strain m25T was able to grow in the absence of yeast extract on glycerol, pyruvate, arginine and cysteine. In the presence of 0.2 % yeast extract, strain m25T grew on carbohydrates and was able to use glucose, cellobiose, fructose, raffinose and galactose. The novel strain could utilize glycerol, urea, pyruvate, peptone and tryptone. The major fatty acids were iso-C15 : 0, C14 : 0, C16 : 0 DMA (dimethyl acetal) and iso-C15 : 0 DMA. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the new isolate was closely related to Lutispora thermophila EBR46T (95.02 % 16S rRNA gene sequence similarity). Genome relatedness was determined using both average nucleotide identity and amino acid identity analyses, the results of which both strongly supported that strain m25T belongs to the genus Lutispora. Based on its unique phylogenetic features, strain m25T is considered to represent a novel species within the genus Lutispora. Moreover, based on its unique physiologic features, mainly the lack of spore formation, a proposal to amend the genus Lutispora is also provided to include the non-spore-forming and mesophilic species. Lutispora saccharofermentans sp. nov. is proposed. The type strain of the species is m25T (=DSM 112749T=ATCC TSD-268T).
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Affiliation(s)
| | - Morgan Carpenter
- School of Natural Sciences, Environment Center Wales, Bangor University, UK
| | - Daniel Chaplin
- Centre for Environmental Biotechnology (CEB), Bangor University, UK
| | - Peter Golyshin
- Centre for Environmental Biotechnology (CEB), Bangor University, UK
| | - James E McDonald
- School of Natural Sciences, Environment Center Wales, Bangor University, UK.,Current address: School of Biosciences, University of Birmingham, Birmingham, UK
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19
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Zhu M, He L, Liu J, Long Y, Shentu J, Lu L, Shen D. Dynamic processes in conjunction with microbial response to unveil the attenuation mechanisms of tris (2-chloroethyl) phosphate (TCEP) in non-sanitary landfill soils. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 316:120666. [PMID: 36403879 DOI: 10.1016/j.envpol.2022.120666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 10/07/2022] [Accepted: 11/12/2022] [Indexed: 06/16/2023]
Abstract
Although the environmental and health risks of chlorinated organophosphate esters (OPEs-Cl) have drawn much attention, its environmental behaviors have been insufficiently characterized. As a notable sink of this emerging contaminant, non-sanitary landfills, which may decompose/accumulate OPEs-Cl, is of particular concern. In the present study, the dynamic processes of the typical OPEs-Cl, tris(2-chloroethyl) phosphate (TCEP), in non-sanitary landfill soils were analyzed under anaerobic condition, and the microbial taxa involved in these processes were explored. Our results showed that TCEP could be simultaneously reduced by abiotic and biotic processes, as it was reduced by 73.9% and 65.5% over the 120-day experiment in landfill humus and subsoil, respectively. Notably, the degradation of TCEP was significantly (p < 0.05) enhanced under the stress of a high TCEP concentration (10 μg g-1), while its ecological consequences were found insignificant regarding the microbial diversity and community structure and the typical soil redox processes, including Fe(III)/SO42- reduction and methanogenesis, in both soils. The microbial diversity of subsoil was significantly lower, and acetate was an important factor in changing microbial communities in landfill soils. The microbes in the family Nocardioidaceae and genus Pseudomonas might contribute to in the degradation of TCEP in landfill humus and subsoil, respectively. The metabolism related to sulfur and sulfate respiration were significantly (p < 0.05) correlated with TCEP reduction, and Desulfosporosinus were found as a potentially functional microbial taxon in TCEP degradation in both soils. The results could advance our understanding of the environmental behavior of OPEs-Cl in landfill-like complex environments.
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Affiliation(s)
- Min Zhu
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310012, PR China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou, 310012, PR China; Instrumental Analysis Center of Zhejiang Gongshang University, Hangzhou, 310012, PR China; Key Laboratory of Pollution Exposure and Health Intervention of Zhejiang Province, Hangzhou, 310012, PR China
| | - Lisha He
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310012, PR China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou, 310012, PR China
| | - Jiayi Liu
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310012, PR China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou, 310012, PR China
| | - Yuyang Long
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310012, PR China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou, 310012, PR China; Instrumental Analysis Center of Zhejiang Gongshang University, Hangzhou, 310012, PR China
| | - Jiali Shentu
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310012, PR China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou, 310012, PR China; Instrumental Analysis Center of Zhejiang Gongshang University, Hangzhou, 310012, PR China
| | - Li Lu
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310012, PR China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou, 310012, PR China; Instrumental Analysis Center of Zhejiang Gongshang University, Hangzhou, 310012, PR China
| | - Dongsheng Shen
- School of Environmental Science and Engineering, Zhejiang Gongshang University, Hangzhou, 310012, PR China; Zhejiang Provincial Key Laboratory of Solid Waste Treatment and Recycling, Hangzhou, 310012, PR China; Instrumental Analysis Center of Zhejiang Gongshang University, Hangzhou, 310012, PR China.
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20
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Wei X, Huang Z, Jiang L, Li Y, Zhang X, Leng Y, Jiang C. Charting the landscape of the environmental exposome. IMETA 2022; 1:e50. [PMID: 38867899 PMCID: PMC10989948 DOI: 10.1002/imt2.50] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 07/13/2022] [Accepted: 07/30/2022] [Indexed: 06/14/2024]
Abstract
The exposome depicts the total exposures in the lifetime of an organism. Human exposome comprises exposures from environmental and humanistic sources. Biological, chemical, and physical environmental exposures pose potential health threats, especially to susceptible populations. Although still in its nascent stage, we are beginning to recognize the vast and dynamic nature of the exposome. In this review, we systematically summarize the biological and chemical environmental exposomes in three broad environmental matrices-air, soil, and water; each contains several distinct subcategories, along with a brief introduction to the physical exposome. Disease-related environmental exposures are highlighted, and humans are also a major source of disease-related biological exposures. We further discuss the interactions between biological, chemical, and physical exposomes. Finally, we propose a list of outstanding challenges under the exposome research framework that need to be addressed to move the field forward. Taken together, we present a detailed landscape of environmental exposome to prime researchers to join this exciting new field.
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Affiliation(s)
- Xin Wei
- Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences InstituteZhejiang UniversityHangzhouZhejiangChina
| | - Zinuo Huang
- Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences InstituteZhejiang UniversityHangzhouZhejiangChina
| | - Liuyiqi Jiang
- Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences InstituteZhejiang UniversityHangzhouZhejiangChina
| | - Yueer Li
- Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences InstituteZhejiang UniversityHangzhouZhejiangChina
| | - Xinyue Zhang
- Department of GeneticsStanford UniversityStanfordCaliforniaUSA
| | - Yuxin Leng
- Department of Intensive Care UnitPeking University Third HospitalBeijingChina
| | - Chao Jiang
- Zhejiang Provincial Key Laboratory of Cancer Molecular Cell Biology, Life Sciences InstituteZhejiang UniversityHangzhouZhejiangChina
- Zhejiang Provincial Key Laboratory of Pancreatic Disease, First Affiliated HospitalZhejiang University School of MedicineHangzhouZhejiangChina
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21
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Liu J, Zhang D, Luo Y, Ding T, Hu L. Microbial mediated arsenate reducing behavior in landfill leachate-saturated zone. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 314:120281. [PMID: 36167165 DOI: 10.1016/j.envpol.2022.120281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 09/19/2022] [Accepted: 09/22/2022] [Indexed: 06/16/2023]
Abstract
As(V) reduction mediated by microorganisms might be an essential process in resisting As toxicity since As(V) is the major species in the landfill. LSZ has been considered as a trigger of all types of microbial activity inside a landfill site. This research investigated the microbial As(V)-reducing behavior in LSZ. The results revealed that higher As(V)-reduction efficiency in higher As(V) content-stress LSZ scenario. The corresponding microbial diversity also varied with the As(V) content. The microbial community structure was related to arrA and arsC distribution, which encode respiratory As(V) reductase and cytoplasmic As(V) reductase, respectively. The landfill As bio-reduction pathways were modeled, as well as the As functional gene distribution among different As(V) contents at different landfill stages. The C, N, and S metabolic processes generally affected the As(V)-resistance genes distribution. Thiosulfate oxidation, denitrification, and dissimilatory nitrate reduction positively affected arsC, while dissimilatory sulfate reduction and methanogenesis trended to play a negative role. This research provides new insight into As(V) bio-reduction inside a landfill site in terms of functional genes distribution and correlation with nutrient elements metabolic processes.
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Affiliation(s)
- Jinbao Liu
- Zhejiang Tongji Vocational College of Science and Technology, Hangzhou, 311231, China
| | - Dongchen Zhang
- College of Quality and Safety Engineering, Institution of Industrial Carbon Metrology, China Jiliang University, Hangzhou, 310018, China
| | - Yongjun Luo
- Zhejiang Guangchuan Engineering Consulting Co. Ltd., Hangzhou, Zhejiang, 310020, China
| | - Tao Ding
- College of Quality and Safety Engineering, Institution of Industrial Carbon Metrology, China Jiliang University, Hangzhou, 310018, China
| | - Lifang Hu
- College of Quality and Safety Engineering, Institution of Industrial Carbon Metrology, China Jiliang University, Hangzhou, 310018, China.
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22
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Singh AK, Nakhate SP, Gupta RK, Chavan AR, Poddar BJ, Prakash O, Shouche YS, Purohit HJ, Khardenavis AA. Mining the landfill soil metagenome for denitrifying methanotrophic taxa and validation of methane oxidation in microcosm. ENVIRONMENTAL RESEARCH 2022; 215:114199. [PMID: 36058281 DOI: 10.1016/j.envres.2022.114199] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2021] [Revised: 05/21/2022] [Accepted: 08/20/2022] [Indexed: 06/15/2023]
Abstract
In the present study, the microbial community residing at different depths of the landfill was characterized to assess their roles in serving as a methane sink. Physico-chemical characterization revealed the characteristic signatures of anaerobic degradation of organic matter in the bottom soil (50-60 cm) and, active process of aerobic denitrification in the top soil (0-10 cm). This was also reflected from the higher abundance of bacterial domain in the top soil metagenome represented by dominant phyla Proteobacteria and Actinobacteria which are prime decomposers of organic matter in landfill soils. The multiple fold higher relative abundances of the two most abundant genera; Streptomyces and Intrasporangium in the top soil depicted greater denitrifying taxa in top soil than the bottom soil. Amongst the aerobic methanotrophs, the genera Methylomonas, Methylococcus, Methylocella, and Methylacidiphilum were abundantly found in the top soil metagenome that were essential for oxidizing methane generated in the landfill. On the other hand, the dominance of archaeal domain represented by Methanosarcina and Methanoculleus in the bottom soil highlighted the complete anaerobic digestion of organic components via acetoclasty, carboxydotrophy, hydrogenotrophy, methylotrophy. Functional characterization revealed a higher abundance of methane monooxygenase gene in the top soil and methyl coenzyme M reductase gene in the bottom soil that correlated with the higher relative abundance of aerobic methanotrophs in the top soil while methane generation being the active process in the highly anaerobic bottom soil in the landfill. The activity dependent abundance of endogenous microbial communities in the different zones of the landfill was further validated by microcosm studies in serum bottles which established the ability of the methanotrophic community for methane metabolism in the top soil and their potential to serve as sink for methane. The study provides a better understanding about the methanotrophs in correlation with their endogenous environment, so that these bacteria can be used in resolving the environmental issues related to methane and nitrogen management at landfill site.
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Affiliation(s)
- Ashish Kumar Singh
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Suraj Prabhakarrao Nakhate
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Rakesh Kumar Gupta
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Atul Rajkumar Chavan
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Bhagyashri Jagdishprasad Poddar
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Om Prakash
- National Centre for Microbial Resource, National Centre for Cell Sciences, Pune, Maharashtra, 411007, India
| | - Yogesh S Shouche
- National Centre for Microbial Resource, National Centre for Cell Sciences, Pune, Maharashtra, 411007, India
| | - Hemant J Purohit
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Anshuman Arun Khardenavis
- Environmental Biotechnology and Genomics Division, CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, 440020, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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Sharma P, Nadda AK, Kumar S. Microbial community profiling in bio-stimulated municipal solid waste for effective removal of organic pollutants containing endocrine disrupting chemicals. Microbiol Res 2022; 267:127273. [PMID: 36481500 DOI: 10.1016/j.micres.2022.127273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Revised: 10/01/2022] [Accepted: 11/24/2022] [Indexed: 11/26/2022]
Abstract
The study was aimed to improve the degradation of organic pollutants in municipal solid waste (MSW) through the bio-stimulation process. The results showed that the physico-chemical properties of MSW (control) had a high value of pH (9.2 ± 0.02); total suspended solids (TSS: 1547 ± 23 mg/kg-1), and total dissolved solids (TDS:76 ± 0.67 mg/kg-1). After the biostimulation process (biostimulated MSW), the physico-chemical parameters of MSW were reduced as pH (7.1 ± 0.01); TSS (41 ± 0.01 mg/kg-1), and TDS (789 ± 03 mg/kg-1). Furthermore, the major organic pollutants detected from MSW by gas chromatography-mass spectroscopy (GC-MS) analysis at different retention time (RT) were hexadecane (RT-8.79); pentadecane (RT-9.36); and hexasiloxane (RT-9.43) while these organic pollutants were degraded after the biostimulation process. The whole-genome metagenome sequencing size (%) analyses showed major groups of bacteria (40.82%) followed by fungi (0.05%), virus (0.0032%), and archaea (0.0442%) in MSW. The species richness and evenness of the microbial community were decreased substantially due to the biostimulation treatment. The total number of genes in the biostimulated MSW (PS-3_11267) sample were 465302 whereas the number of genes in the control MSW (PS-4_11268) sample were 256807. Furthermore, the biostimulated MSW (PS-3_11267) aligned the reads to bacteria (19502525), fungi (40030), virus (3339), and archaea (12759) genomes whereas the control sample (PS-4_11268) aligned the reads to bacteria (17057259), fungi (19148), virus (1335), and archaea (18447) genomes. Moreover, the relative abundance at genus level in biostimulated MSW (PS-3_11267) (Ochrobactrum and Phenylobacterium), phylum; (Proteobacteria and Actinobacteria), and species (Chthoniobacter flavus and Vulgatibacter incomptus) level was the most abundant. The results provided valuable information regarding the degradation of organic pollutants in MSW by microbial communities through biostimulation for the prevention of soil pollution and health protection.
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Affiliation(s)
- Pooja Sharma
- Waste Re-processing Division, CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur 440 020, Maharashtra, India
| | - Ashok Kumar Nadda
- Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, Himachal Pradesh 173 234, India
| | - Sunil Kumar
- Waste Re-processing Division, CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur 440 020, Maharashtra, India.
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24
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Villarruel-Moore A, Reinhart D, Sohn Y. Incinerator ash characterization - Implications for elevated temperature landfills. WASTE MANAGEMENT (NEW YORK, N.Y.) 2022; 153:72-80. [PMID: 36055177 DOI: 10.1016/j.wasman.2022.08.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 07/28/2022] [Accepted: 08/20/2022] [Indexed: 06/15/2023]
Abstract
The occurrence of temperatures in municipal solid waste (MSW) landfills in excess of 55 °C is a problem that has gained much attention in the solid waste industry, both domestically and globally. Facilities which frequently experience such temperatures are termed Elevated Temperature Landfills (ETLFs). Ash, both MSW incinerator ash (MSWIA) and coal combustion ash (CCA), when co-disposed with unburned MSW, can provide constituents which are able to partake in abiotic exothermic reactions that may develop or sustain elevated temperatures. These reactions include hydration and carbonation, as well as the oxidation and corrosion of metals commonly found in ash. In this study, sixteen ash samples from across the U.S. were characterized by using X-ray diffraction (XRD), X-ray fluorescence (XRF), and scanning electron microscopy coupled with X-ray energy dispersive spectroscopy (SEM/XEDS) to identify complex mineral and glassy phases enriched in calcium, silicon, aluminum, and iron. The high-temperature incineration of MSW and coal feedstocks, along with weathering processes impacting these ashes, yield a heterogenous material capable of generating appreciable heat given the right conditions. Additionally, a simple model was developed and, using ash compositions obtained via XEDS, a value termed relative heat potential (RHP) was estimated for each sample. Results show that CCAs may be expected to generate roughly 15 % more heat than MSWIAs when deposited in landfills due to their greater aluminum content.
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Affiliation(s)
- Angel Villarruel-Moore
- Civil, Environmental, and Construction Engineering Dept., University of Central Florida, 12800 Pegasus Dr., Suite #211, Orlando, FL, United States.
| | - Debra Reinhart
- Civil, Environmental, and Construction Engineering Dept., University of Central Florida, Orlando, FL, United States.
| | - Yongho Sohn
- Dept. of Materials Science and Engineering, University of Central Florida, Orlando, FL, United States.
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25
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Sauk AH, Hug LA. Substrate-restricted methanogenesis and limited volatile organic compound degradation in highly diverse and heterogeneous municipal landfill microbial communities. ISME COMMUNICATIONS 2022; 2:58. [PMID: 37938269 PMCID: PMC9723747 DOI: 10.1038/s43705-022-00141-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 05/26/2022] [Accepted: 06/14/2022] [Indexed: 06/17/2023]
Abstract
Microbial communities in landfills transform waste and generate methane in an environment unique from other built and natural environments. Landfill microbial diversity has predominantly been observed at the phylum level, without examining the extent of shared organismal diversity across space or time. We used 16S rRNA gene amplicon and shotgun metagenomic sequencing to examine the taxonomic and functional diversity of the microbial communities inhabiting a Southern Ontario landfill. The microbial capacity for volatile organic compound degradation in leachate and groundwater samples was correlated with geochemical conditions. Across the landfill, 25 bacterial and archaeal phyla were present at >1% relative abundance within at least one landfill sample, with Patescibacteria, Bacteroidota, Firmicutes, and Proteobacteria dominating. Methanogens were neither numerous nor particularly abundant, and were predominantly constrained to either acetoclastic or methylotrophic methanogenesis. The landfill microbial community was highly heterogeneous, with 90.7% of organisms present at only one or two sites within this interconnected system. Based on diversity measures, the landfill is a microbial system undergoing a constant state of disturbance and change, driving the extreme heterogeneity observed. Significant differences in geochemistry occurred across the leachate and groundwater wells sampled, with calcium, iron, magnesium, boron, meta and para xylenes, ortho xylenes, and ethylbenzene concentrations contributing most strongly to observed site differences. Predicted microbial degradation capacities indicated a heterogeneous community response to contaminants, including identification of novel proteins implicated in anaerobic degradation of key volatile organic compounds.
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Affiliation(s)
- Alexandra H Sauk
- Department of Biology, University of Waterloo, 200 University Ave, Waterloo, ON, N2L 3G1, Canada
| | - Laura A Hug
- Department of Biology, University of Waterloo, 200 University Ave, Waterloo, ON, N2L 3G1, Canada.
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26
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P S G da Silva VE, de S Rollemberg SL, da S E Santos SG, C V Silva TF, P Vilar VJ, B Dos Santos A. Landfill leachate biological treatment: perspective for the aerobic granular sludge technology. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:45150-45170. [PMID: 35486275 DOI: 10.1007/s11356-022-20451-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 04/21/2022] [Indexed: 06/14/2023]
Abstract
Landfill leachates are high-strength complex mixtures containing dissolved organic matter, ammonia, heavy metals, and sulfur species, among others. The problem of leachate treatment has subsisted for some time, but an efficient and cost-effective universal solution capable of ensuring environmental resources protection has not been found. Aerobic granular sludge (AGS) has been considered a promising technology for biological wastewater treatment in recent years. Granules' layered structure, with an aerobic outer layer and an anaerobic/anoxic core, enables the presence of diverse microbial populations without the need for support media, allowing simultaneous removal of different pollutants in a single unit. Besides, its strong and compact arrangement provides higher tolerance to toxic pollutants and the ability to withstand large load fluctuations. Furthermore, its good that settling properties allow high biomass retention and better sludge separation. Nevertheless, AGS-related research has focused on carbon-nitrogen-phosphorus removal, mainly from sanitary sewage. This review aims to summarize and analyze the main findings and problems reported in the literature regarding AGS application to landfill leachate treatment and identify the knowledge gaps for future applications.
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Affiliation(s)
- Vicente E P S G da Silva
- Department of Hydraulic and Environmental Engineering, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Silvio L de S Rollemberg
- Department of Hydraulic and Environmental Engineering, Federal University of Ceará, Fortaleza, Ceará, Brazil
| | - Sara G da S E Santos
- LSRE-LCM - Laboratory of Separation and Reaction Engineering - Laboratory of Catalysis and Materials, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
- ALiCE - Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
| | - Tânia F C V Silva
- LSRE-LCM - Laboratory of Separation and Reaction Engineering - Laboratory of Catalysis and Materials, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
- ALiCE - Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
| | - Vítor J P Vilar
- LSRE-LCM - Laboratory of Separation and Reaction Engineering - Laboratory of Catalysis and Materials, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
- ALiCE - Associate Laboratory in Chemical Engineering, Faculty of Engineering, University of Porto, Rua Dr. Roberto Frias, 4200-465, Porto, Portugal
| | - André B Dos Santos
- Department of Hydraulic and Environmental Engineering, Federal University of Ceará, Fortaleza, Ceará, Brazil.
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Delineating the Drivers and Functionality of Methanogenic Niches within an Arid Landfill. Appl Environ Microbiol 2022; 88:e0243821. [PMID: 35404071 PMCID: PMC9088289 DOI: 10.1128/aem.02438-21] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Microbial communities mediate the transformation of organic matter within landfills into methane (CH4). Yet their ecological role in CH4 production is rarely evaluated. To characterize the microbiome associated with this biotransformation, the overall community and methanogenic Archaea were surveyed in an arid landfill using leachate collected from distinctly aged landfill cells (i.e., younger, intermediate, and older). We hypothesized that distinct methanogenic niches exist within an arid landfill, driven by geochemical gradients that developed under extended and age-dependent waste biodegradation stages. Using 16S rRNA and mcrA gene amplicon sequencing, we identified putative methanogenic niches as follows. The order Methanomicrobiales was the most abundant order in leachate from younger cells, where leachate temperature and propionate concentrations were measured at 41.8°C ± 1.7°C and 57.1 ± 10.7 mg L−1. In intermediate-aged cells, the family Methanocellaceae was identified as a putative specialist family under intermediate-temperature and -total dissolved solid (TDS) conditions, wherein samples had a higher alpha diversity index and near CH4 concentrations. In older-aged cells, accumulating metals and TDS supported Methanocorpusculaceae, “Candidatus Bathyarchaeota,” and “Candidatus Verstraetearchaeota” operational taxonomic units (OTUs). Consistent with the mcrA data, we assayed methanogenic activity across the age gradient through stable isotopic measurements of δ13C of CH4 and δ13C of CO2. The majority (80%) of the samples’ carbon fractionation was consistent with hydrogenotrophic methanogenesis. Together, we report age-dependent geochemical gradients detected through leachate in an arid landfill seemingly influencing CH4 production, niche partitioning, and methanogenic activity. IMPORTANCE Microbiome analysis is becoming common in select municipal and service ecosystems, including wastewater treatment and anaerobic digestion, but its potential as a microbial-status-informative tool to promote or mitigate CH4 production has not yet been evaluated in landfills. Methanogenesis mediated by Archaea is highly active in solid-waste microbiomes but is commonly neglected in studies employing next-generation sequencing techniques. Identifying methanogenic niches within a landfill offers detail into operations that positively or negatively impact the commercial production of methane known as biomethanation. We provide evidence that the geochemistry of leachate and its microbiome can be a variable accounting for ecosystem-level (coarse) variation of CH4 production, where we demonstrate through independent assessments of leachate and gas collection that the functional variability of an arid landfill is linked to the composition of methanogenic Archaea.
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Tiwari N, Bansal M, Santhiya D, Sharma JG. Insights into microbial diversity on plastisphere by multi-omics. Arch Microbiol 2022; 204:216. [PMID: 35316402 DOI: 10.1007/s00203-022-02806-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 02/13/2022] [Accepted: 02/14/2022] [Indexed: 12/20/2022]
Abstract
Plastic pollution is a major concern in marine environment as it takes many years to degrade and is one of the greatest threats to marine life. Plastic surface, referred to as plastisphere, provides habitat for growth and proliferation of various microorganisms. The discovery of these microbes is necessary to identify significant genes, enzymes and bioactive compounds that could help in bioremediation and other commercial applications. Conventional culture techniques have been successful in identifying few microbes from these habitats, leaving majority of them yet to be explored. As such, to recognize the vivid genetic diversity of microbes residing in plastisphere, their structure and corresponding ecological roles within the ecosystem, an emerging technique, called metagenomics has been explored. The technique is expected to provide hitherto unknown information on microbes from the plastisphere. Metagenomics along with next generation sequencing provides comprehensive knowledge on microbes residing in plastisphere that identifies novel microbes for plastic bioremediation, bioactive compounds and other potential benefits. The following review summarizes the efficiency of metagenomics and next generation sequencing technology over conventionally used methods for culturing microbes. It attempts to illustrate the workflow mechanism of metagenomics to elucidate diverse microbial profiles. Further, importance of integrated multi-omics techniques has been highlighted in discovering microbial ecology residing on plastisphere for wider applications.
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Affiliation(s)
- Neha Tiwari
- Department of Biotechnology, Delhi Technological University, Delhi, India
| | - Megha Bansal
- Department of Biotechnology, Delhi Technological University, Delhi, India
| | - Deenan Santhiya
- Department of Applied Chemistry, Delhi Technological University, Shahbad Daulatpur, Main Bawana Road, Delhi, 110042, India.
| | - Jai Gopal Sharma
- Department of Biotechnology, Delhi Technological University, Delhi, India
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29
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Bacteria Community Vertical Distribution and Its Response Characteristics to Waste Degradation Degree in a Closed Landfill. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12062965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The diversity, community structure and vertical distribution characteristics of bacteria in the surface and subsurface soil and water samples of a closed landfill in Shanghai Jiading District were investigated to reveal the relationships between natural waste degradation degree and the succession of bacterial community composition. High-throughput sequencing of bacteria 16S rDNA genes was used to analyze the bacterial community structure and diversity. The results showed that the diversity of bacteria in the surface samples was higher than that in the deep samples. Proteobacteria was the dominant phylum in all the samples, and the percentage increased with depth. At the genus level, Thiobacillus, Pseudomonas, Aquabacterium, and Hydrogenophaga were the dominant genera in surface, medium, deep and ultra-deep soils, respectively. The Bray–Curtis dissimilarity of the soil bacterial communities in the same layer was small, indicating that the community composition of the samples in the same layer was similar. The RDA result showed that ammonium, nitrate, pH and C/N significantly influenced the community structure of soil bacteria. This is of great relevance to understand the effect of natural waste degradation on bacterial communities in closed landfills.
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30
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Sagar I, Nimonkar Y, Dhotre D, Shouche Y, Ranade D, Dewala S, Prakash O. A Microcosm Model for the Study of Microbial Community Shift and Carbon Emission from Landfills. Indian J Microbiol 2022; 62:195-203. [DOI: 10.1007/s12088-021-00995-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Accepted: 12/07/2021] [Indexed: 12/22/2022] Open
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31
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da Costa Silva TA, de Paula M, Silva WS, Lacorte GA. Can moderate heavy metal soil contaminations due to cement production influence the surrounding soil bacterial communities? ECOTOXICOLOGY (LONDON, ENGLAND) 2022; 31:134-148. [PMID: 34748159 DOI: 10.1007/s10646-021-02494-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 10/13/2021] [Indexed: 06/13/2023]
Abstract
Events of soil contamination by heavy metals are mostly related to human activities that release these metals into the environment as emissions or effluents. Among the industrial activities related to heavy metal pollution, cement production plants are considered one of the most common sources. In this work we applied the High-throughput sequencing approach called 16 S rDNA metabarcoding to perform the taxonomic characterization of the prokaryotic communities of the soil surrounding three cement plants as well as two areas outside the influence of the cement plants that represented agricultural production environments free of heavy metal contamination (control areas). We applied the environmental genomics approaches known as "structural community metrics" (α- and β-diversity metrics) and "functional community metrics" (PICRUSt2 approach) to verify whether or not the effects of heavy metal contamination in the study area generated impacts on soil bacterial communities. We found that the impact related to the elevation of heavy metal concentration due to the operation of cement plants in the surrounding soil can be considered smooth according to globally recognized indices such as Igeo. However, we identified that both the taxonomic and functional structures of the communities surrounding cement plants were different from those found in the control areas. We consider that our findings contribute significantly to the general understanding of the effects of heavy metals on the soil ecosystem by showing that light contamination can disturb the dynamics of ecosystem services provided by soil, specifically those associated with microbial metabolism.
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Affiliation(s)
- Thiago Augusto da Costa Silva
- Molecular Biology Lab, Department of Science and Languages, Federal Institute of Minas Gerais - Bambuí Campus, Bambuí, Minas Gerais State, Brazil
| | - Marcos de Paula
- Molecular Biology Lab, Department of Science and Languages, Federal Institute of Minas Gerais - Bambuí Campus, Bambuí, Minas Gerais State, Brazil
| | | | - Gustavo Augusto Lacorte
- Molecular Biology Lab, Department of Science and Languages, Federal Institute of Minas Gerais - Bambuí Campus, Bambuí, Minas Gerais State, Brazil.
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32
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Babaei S, Sabour MR, Moftakhari Anasori Movahed S. Combined landfill leachate treatment methods: an overview. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:59594-59607. [PMID: 34510344 DOI: 10.1007/s11356-021-16358-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 09/01/2021] [Indexed: 06/13/2023]
Abstract
Landfill leachate is commonly heavily contaminated and consists of high amount of organic compounds, inorganic salts, toxic gases, halogenated hydrocarbons, and heavy metals that exerts a serious threat to public health and the environment. Thus, it requires treatments before direct release into receiving waters. Selecting the efficient method for leachate treatment is still a major challenge. While physicochemical treatment methods such as coagulation-flocculation, adsorption, membrane filtration, ozonation, air stripping, and advanced oxidation processes (AOP) are appropriate for mature leachate, young leachate requires biological treatments including membrane bioreactor (MBR), activated sludge (AS), upflow anaerobic sludge blanket (UASB), and rotational biological contactor (RBC). Recently, the integration of biological processes and physicochemical methods has been demonstrated to be very efficient. It is found that combined coagulation-flocculation/nanofiltration and activated sludge/reverse osmosis are more efficacious than other integrated physicochemical methods and combined physicochemical/biological methods, respectively.
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Affiliation(s)
- Shamimeh Babaei
- Faculty of Civil Engineering, K. N. Toosi University of Technology, Tehran, Iran
| | - Mohammad Reza Sabour
- Faculty of Civil Engineering, K. N. Toosi University of Technology, Tehran, Iran
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Paliya S, Mandpe A, Kumar MS, Kumar S. Aerobic degradation of decabrominated diphenyl ether through a novel bacterium isolated from municipal waste dumping site: Identification, degradation and metabolic pathway. BIORESOURCE TECHNOLOGY 2021; 333:125208. [PMID: 33901911 DOI: 10.1016/j.biortech.2021.125208] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Revised: 04/19/2021] [Accepted: 04/19/2021] [Indexed: 06/12/2023]
Abstract
In the present study, a novel bacterium capable of degrading BDE-209 aerobically was isolated from a municipal waste dumping site and identified as Bacillus tequilensis strain BDE-S1 through 16S rRNA gene sequencing. A correlation between BDE-209 and bromide concentration, COD, TOC, and cell biomass was established. 65% of 50 mg/L initial concentration of BDE-209 was degraded within eight days of incubation by BDE-S1 strain. Two hexa, two penta, one tetra-BDE congener, and benzamide were detected as metabolites. The bromide release, COD, TOC and cell biomass were found to be significantly correlated parameters with BDE-209 degradation. Based on the metabolite analysis, ortho and meta debromination, cleavage of diphenyl ether bond and ring-opening were suggested as possible degradation pathways. This is the first study demonstrating the use of indigenously isolated Bacillus tequilensis strain BDE-S1 for aerobic degradation of BDE-209, which could provide new comprehension for bioremediation of PBDEs from contaminated environments.
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Affiliation(s)
- Sonam Paliya
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur 440 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India
| | - Ashootosh Mandpe
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur 440 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India
| | - M Suresh Kumar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur 440 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India
| | - Sunil Kumar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur 440 020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India.
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Abiriga D, Jenkins A, Vestgarden LS, Klempe H. A nature-based solution to a landfill-leachate contamination of a confined aquifer. Sci Rep 2021; 11:14896. [PMID: 34290267 PMCID: PMC8295393 DOI: 10.1038/s41598-021-94041-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 07/06/2021] [Indexed: 11/29/2022] Open
Abstract
Remediation of groundwater from landfill contamination presents a serious challenge due to the complex mixture of contaminants discharged from landfills. Here, we show the significance of a nature-based solution to a landfill-contaminated aquifer in southeast Norway. Groundwater physicochemical parameters monitored for twenty-eight years were used as a proxy to infer natural remediation. Results show that concentrations of the major chemical variables decreased with time and distance until they tailed off. An exception to this was sulphate, which showed an increase, but apparently, exhibits a stationary phase. The water types were found to be most similar between samples from active landfill and post-closure stages, while samples from the stabilised stage showed a different water type. All the chemical parameters of samples from the stabilised stage were found to be within the Norwegian drinking water standards, except iron and manganese, which were only marginally above the limits, an indication of a possible recovery of this aquifer. The findings highlight the significance of natural attenuation processes in remediating contaminated aquifers and have significant consequences for future contamination management, where natural remediation can be viewed as an alternative worth exploring. This is promising in the wake of calls for sustainable remediation management strategies.
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Affiliation(s)
- Daniel Abiriga
- Department of Natural Sciences and Environmental Health, Faculty of Technology, Natural Sciences and Maritime Sciences, University of South-Eastern Norway, Gullbringvegen 36, 3800, Bø, Norway.
| | - Andrew Jenkins
- Department of Natural Sciences and Environmental Health, Faculty of Technology, Natural Sciences and Maritime Sciences, University of South-Eastern Norway, Gullbringvegen 36, 3800, Bø, Norway
| | - Live S Vestgarden
- Department of Natural Sciences and Environmental Health, Faculty of Technology, Natural Sciences and Maritime Sciences, University of South-Eastern Norway, Gullbringvegen 36, 3800, Bø, Norway
| | - Harald Klempe
- Department of Natural Sciences and Environmental Health, Faculty of Technology, Natural Sciences and Maritime Sciences, University of South-Eastern Norway, Gullbringvegen 36, 3800, Bø, Norway
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Yang N, Tao Y, Wang X, Zhan G, He X, Zhang L, Li W, Ding Y, Li D. Impact of low temperature on ex situ nitritation/in situ denitritation in field pilot-scale landfill for postclosure care of leachate treatment and gas content. WASTE MANAGEMENT (NEW YORK, N.Y.) 2021; 131:61-71. [PMID: 34107374 DOI: 10.1016/j.wasman.2021.05.036] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 06/12/2023]
Abstract
Leachates and landfill gas (LFG) are the major problems for closed landfills (CL) and cause significant threats to receiving waterbody and ambient air quality. In this study, a field pilot-scale CL with ex situ nitritation/in situ denitritation process was constructed and operated continuously under wide temperature variations. The effect of low temperature on leachate treatment, and LFG content was studied. Results showed that the combined process can efficiently remove nitrogen and organic matters from leachate, and change LFG content under low-temperature condition. In the ex situ nitritaion, maximum removal efficiencies of ammonia and chemical oxygen demand (COD) were over 99% and 85%, respectively. The loading rate of nitrogen and COD reached 0.5 kg N m-3 d-1 and 0.7 kg COD m-3 d-1, respectively. The inhibitions of free ammonia (FA) and free nitrous acid (FNA), and low temperature were the key factors affecting nitritation. With recirculating nitrified leachate, total oxidized nitrogen (TON) was completely reduced, and the refuse decomposition was accelerated. Denitritation was the main reaction responsible in the CL. Additionally, methane content was observed lowly at non-inhibitory TON loading rate of 5.8 ± 3.7 g N ton-1 TS d-1. This decrease was not caused by the increased of TON loading, but a carbon source competition by denitrificans. The estimated COD consumption and methane reduction were 55.0 kg d-1 by TON reduction, and 20 m3 d-1, respectively. Hence, this study served a potential strategy for postclosure care of landfills under low temperature variation.
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Affiliation(s)
- Nuan Yang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China; Biogas Institute of Ministry of Agriculture and Rural Affairs, Chengdu 610041, China
| | - Yong Tao
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Xiaomei Wang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Guoqiang Zhan
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Xiaohong He
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Lixia Zhang
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Wei Li
- Chengdu Municipal Solid Waste Sanitary Disposal Site, Chengdu 610108, China
| | - Yong Ding
- Chengdu Municipal Solid Waste Sanitary Disposal Site, Chengdu 610108, China
| | - Daping Li
- CAS Key Laboratory of Environmental and Applied Microbiology, Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China.
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Analysis of Microbial Communities in Aged Refuse Based on 16S Sequencing. SUSTAINABILITY 2021. [DOI: 10.3390/su13084111] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Aged refuse is widely considered to have certain soil fertility. 16S rRNA amplicon sequencing is used to investigate the microbial community of aged refuse. The aged refuse is found to contain higher soil fertility elements (total nitrogen, total phosphorus, total potassium, etc.) and higher concentrations of heavy metals (Pb, Cd, Zn, and Hg). Taxonomy based on operational taxonomic units (OTUs) shows that Actinobacteria, Proteobacteria, Chloroflexi, Acidobacteria, and Gemmatimonadetes are the main bacterial phyla in the two soils and there is a palpable difference in the microbial community composition between the two groups of samples. The genera Paramaledivibacter, Limnochorda, Marinobacter, Pseudaminobacter, Kocuria, Bdellovibrio, Halomonas, Gillisia, and Membranicola are enriched in the aged refuse. Functional predictive analysis shows that both the control soil and aged refuse have a high abundance of “carbohydrate metabolism” and “amino acid metabolism”, and show differences in the abundance of several metabolism pathways, such as “xenobiotics biodegradation and metabolism” and “lipid metabolism”. Aged refuse and undisturbed soil show significant differences in alpha diversity and microbial community composition. Multiple environmental factors (Hg, TN, Cr, Cd, etc.) significantly impact microorganisms’ abundance (Marinobacter, Halomonas, Blastococcus, etc.). Our study provides valuable knowledge for the ecological restoration of closed landfills.
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Sekhohola-Dlamini L, Selvarajan R, Ogola HJO, Tekere M. Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages. Microbiologyopen 2020; 10:e1118. [PMID: 33314739 PMCID: PMC7818627 DOI: 10.1002/mbo3.1118] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Revised: 08/13/2020] [Accepted: 08/20/2020] [Indexed: 01/26/2023] Open
Abstract
Municipal landfills are hot spots of dynamic bioprocesses facilitated by complex interactions of a multifaceted microbiome, whose functioning in municipal landfills at different maturing stages is poorly understood. This study determined bacterial community composition, interaction conetworks, metabolic functions, and controlling physicochemical properties in two landfills aged 14 and 36 years. High throughput sequencing revealed a similar distribution of bacterial diversity, evenness, and richness in the 14‐ and 36‐year‐old landfills in the 0–90 cm depth. At deeper layers (120–150 cm), the 14‐year‐old landfill had significantly greater bacterial diversity and richness indicating that it is a more active microcosm than the 36‐year‐old landfill, where phylum Epsilonbacteraeota was overwhelmingly dominant. The taxonomic and functional diversity in the 14‐year‐old landfill was further reflected by the abundant presence of indicator genera Pseudomonas,Lutispora,Hydrogenspora, and Sulfurimonas coupled with the presence of biomarker enzymes associated with carbon (C), nitrogen (N), and sulfur (S) metabolism. Furthermore, canonical correspondence analysis revealed that bacteria in the 14‐year‐old landfill were positively correlated with high C, N, S, and phosphorus resulting in positive cooccurrence interactions. In the 36‐year‐old landfill, negative coexclusion interactions populated by members of N fixing Rhizobiales were dominant, with metabolic functions and biomarker enzymes predicting significant N fixation that, as indicated by interaction network, potentially inhibited ammonia‐intolerant bacteria. Overall, our findings show that diverse bacterial community in the 14‐year‐old landfill was dominated by copiotrophs associated with positive conetworks, whereas the 36‐year‐old landfill was dominated by lithotrophs linked to coexclusion interactions that greatly reduced bacterial diversity and richness.
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Affiliation(s)
- Lerato Sekhohola-Dlamini
- Department of Environmental Sciences, University of South Africa (UNISA), Johannesburg, South Africa
| | - Ramganesh Selvarajan
- Department of Environmental Sciences, University of South Africa (UNISA), Johannesburg, South Africa
| | - Henry Joseph Odour Ogola
- Department of Environmental Sciences, University of South Africa (UNISA), Johannesburg, South Africa.,School of Food and Agricultural Sciences, Jaramogi Oginga Odinga University of Science and Technology, Bondo, Kenya
| | - Memory Tekere
- Department of Environmental Sciences, University of South Africa (UNISA), Johannesburg, South Africa
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