BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in Python

Bi-sigmoid spike-timing dependent plasticity learning rule for magnetic tunnel junction-based SNN

In this study, we explore spintronic synapses composed of several Magnetic Tunnel Junctions (MTJs), leveraging their attractive characteristics such as endurance, nonvolatility, stochasticity, and energy efficiency for hardware implementation of unsupervised neuromorphic systems. Spiking Neural Networks (SNNs) running on dedicated hardware are suitable for edge computing and IoT devices where continuous online learning and energy efficiency are important characteristics. We focus in this work on synaptic plasticity by conducting comprehensive electrical simulations to optimize the MTJ-based synapse design and find the accurate neuronal pulses that are responsible for the Spike Timing Dependent Plasticity (STDP) behavior. Most proposals in the literature are based on hardware-independent algorithms that require the network to store the spiking history to be able to update the weights accordingly. In this work, we developed a new learning rule, the Bi-Sigmoid STDP (B2STDP), which originates from the physical properties of MTJs. This rule enables immediate synaptic plasticity based on neuronal activity, leveraging in-memory computing. Finally, the integration of this learning approach within an SNN framework leads to a 91.71% accuracy in unsupervised image classification, demonstrating the potential of MTJ-based synapses for effective online learning in hardware-implemented SNNs.

Hardware implementation of memristor-based artificial neural networks

Artificial Intelligence (AI) is currently experiencing a bloom driven by deep learning (DL) techniques, which rely on networks of connected simple computing units operating in parallel. The low communication bandwidth between memory and processing units in conventional von Neumann machines does not support the requirements of emerging applications that rely extensively on large sets of data. More recent computing paradigms, such as high parallelization and near-memory computing, help alleviate the data communication bottleneck to some extent, but paradigm- shifting concepts are required. Memristors, a novel beyond-complementary metal-oxide-semiconductor (CMOS) technology, are a promising choice for memory devices due to their unique intrinsic device-level properties, enabling both storing and computing with a small, massively-parallel footprint at low power. Theoretically, this directly translates to a major boost in energy efficiency and computational throughput, but various practical challenges remain. In this work we review the latest efforts for achieving hardware-based memristive artificial neural networks (ANNs), describing with detail the working principia of each block and the different design alternatives with their own advantages and disadvantages, as well as the tools required for accurate estimation of performance metrics. Ultimately, we aim to provide a comprehensive protocol of the materials and methods involved in memristive neural networks to those aiming to start working in this field and the experts looking for a holistic approach.

Accelerating spiking neural network simulations with PymoNNto and PymoNNtorch

Spiking neural network simulations are a central tool in Computational Neuroscience, Artificial Intelligence, and Neuromorphic Engineering research. A broad range of simulators and software frameworks for such simulations exist with different target application areas. Among these, PymoNNto is a recent Python-based toolbox for spiking neural network simulations that emphasizes the embedding of custom code in a modular and flexible way. While PymoNNto already supports GPU implementations, its backend relies on NumPy operations. Here we introduce PymoNNtorch, which is natively implemented with PyTorch while retaining PymoNNto's modular design. Furthermore, we demonstrate how changes to the implementations of common network operations in combination with PymoNNtorch's native GPU support can offer speed-up over conventional simulators like NEST, ANNarchy, and Brian 2 in certain situations. Overall, we show how PymoNNto's modular and flexible design in combination with PymoNNtorch's GPU acceleration and optimized indexing operations facilitate research and development of spiking neural networks in the Python programming language.

On computational models of theory of mind and the imitative reinforcement learning in spiking neural networks

Theory of Mind is referred to the ability of inferring other's mental states, and it plays a crucial role in social cognition and learning. Biological evidences indicate that complex circuits are involved in this ability, including the mirror neuron system. The mirror neuron system influences imitation abilities and action understanding, leading to learn through observing others. To simulate this imitative learning behavior, a Theory-of-Mind-based Imitative Reinforcement Learning (ToM-based ImRL) framework is proposed. Employing the bio-inspired spiking neural networks and the mechanisms of the mirror neuron system, ToM-based ImRL is a bio-inspired computational model which enables an agent to effectively learn how to act in an interactive environment through observing an expert, inferring its goals, and imitating its behaviors. The aim of this paper is to review some computational attempts in modeling ToM and to explain the proposed ToM-based ImRL framework which is tested in the environment of River Raid game from Atari 2600 series.

SHIP: a computational framework for simulating and validating novel technologies in hardware spiking neural networks

Investigations in the field of spiking neural networks (SNNs) encompass diverse, yet overlapping, scientific disciplines. Examples range from purely neuroscientific investigations, researches on computational aspects of neuroscience, or applicative-oriented studies aiming to improve SNNs performance or to develop artificial hardware counterparts. However, the simulation of SNNs is a complex task that can not be adequately addressed with a single platform applicable to all scenarios. The optimization of a simulation environment to meet specific metrics often entails compromises in other aspects. This computational challenge has led to an apparent dichotomy of approaches, with model-driven algorithms dedicated to the detailed simulation of biological networks, and data-driven algorithms designed for efficient processing of large input datasets. Nevertheless, material scientists, device physicists, and neuromorphic engineers who develop new technologies for spiking neuromorphic hardware solutions would find benefit in a simulation environment that borrows aspects from both approaches, thus facilitating modeling, analysis, and training of prospective SNN systems. This manuscript explores the numerical challenges deriving from the simulation of spiking neural networks, and introduces SHIP, Spiking (neural network) Hardware In PyTorch, a numerical tool that supports the investigation and/or validation of materials, devices, small circuit blocks within SNN architectures. SHIP facilitates the algorithmic definition of the models for the components of a network, the monitoring of states and output of the modeled systems, and the training of the synaptic weights of the network, by way of user-defined unsupervised learning rules or supervised training techniques derived from conventional machine learning. SHIP offers a valuable tool for researchers and developers in the field of hardware-based spiking neural networks, enabling efficient simulation and validation of novel technologies.

Analog monolayer SWCNTs-based memristive 2D structure for energy-efficient deep learning in spiking neural networks

Advances in materials science and memory devices work in tandem for the evolution of Artificial Intelligence systems. Energy-efficient computation is the ultimate goal of emerging memristor technology, in which the storage and computation can be done in the same memory crossbar. In this work, an analog memristor device is fabricated utilizing the unique characteristics of single-wall carbon nanotubes (SWCNTs) to act as the switching medium of the device. Via the planar structure, the memristor device exhibits analog switching ability with high state stability. The device's conductance and capacitance can be tuned simultaneously, increasing the device's potential and broadening its applications' horizons. The multi-state storage capability and long-term memory are the key factors that make the device a promising candidate for bio-inspired computing applications. As a demonstrator, the fabricated memristor is deployed in spiking neural networks (SNN) to exploit its analog switching feature for energy-efficient classification operation. Results reveal that the computation-in-memory implementation performs Vector Matrix Multiplication with 95% inference accuracy and few femtojoules per spike energy efficiency. The memristor device presented in this work opens new insights towards utilizing the outstanding features of SWCNTs for efficient analog computation in deep learning systems.

Spiking neural networks fine-tuning for brain image segmentation

Introduction

The field of machine learning has undergone a significant transformation with the progress of deep artificial neural networks (ANNs) and the growing accessibility of annotated data. ANNs usually require substantial power and memory usage to achieve optimal performance. Spiking neural networks (SNNs) have recently emerged as a low-power alternative to ANNs due to their sparsity nature. Despite their energy efficiency, SNNs are generally more difficult to be trained than ANNs.

Methods

In this study, we propose a novel three-stage SNN training scheme designed specifically for segmenting human hippocampi from magnetic resonance images. Our training pipeline starts with optimizing an ANN to its maximum capacity, then employs a quick ANN-SNN conversion to initialize the corresponding spiking network. This is followed by spike-based backpropagation to fine-tune the converted SNN. In order to understand the reason behind performance decline in the converted SNNs, we conduct a set of experiments to investigate the output scaling issue. Furthermore, we explore the impact of binary and ternary representations in SNN networks and conduct an empirical evaluation of their performance through image classification and segmentation tasks.

Results and discussion

By employing our hybrid training scheme, we observe significant advantages over both ANN-SNN conversion and direct SNN training solutions in terms of segmentation accuracy and training efficiency. Experimental results demonstrate the effectiveness of our model in achieving our design goals.

SpikingJelly: An open-source machine learning infrastructure platform for spike-based intelligence

Spiking neural networks (SNNs) aim to realize brain-inspired intelligence on neuromorphic chips with high energy efficiency by introducing neural dynamics and spike properties. As the emerging spiking deep learning paradigm attracts increasing interest, traditional programming frameworks cannot meet the demands of the automatic differentiation, parallel computation acceleration, and high integration of processing neuromorphic datasets and deployment. In this work, we present the SpikingJelly framework to address the aforementioned dilemma. We contribute a full-stack toolkit for preprocessing neuromorphic datasets, building deep SNNs, optimizing their parameters, and deploying SNNs on neuromorphic chips. Compared to existing methods, the training of deep SNNs can be accelerated 11×, and the superior extensibility and flexibility of SpikingJelly enable users to accelerate custom models at low costs through multilevel inheritance and semiautomatic code generation. SpikingJelly paves the way for synthesizing truly energy-efficient SNN-based machine intelligence systems, which will enrich the ecology of neuromorphic computing.

From Brain Models to Robotic Embodied Cognition: How Does Biological Plausibility Inform Neuromorphic Systems?

We examine the challenging "marriage" between computational efficiency and biological plausibility-A crucial node in the domain of spiking neural networks at the intersection of neuroscience, artificial intelligence, and robotics. Through a transdisciplinary review, we retrace the historical and most recent constraining influences that these parallel fields have exerted on descriptive analysis of the brain, construction of predictive brain models, and ultimately, the embodiment of neural networks in an enacted robotic agent. We study models of Spiking Neural Networks (SNN) as the central means enabling autonomous and intelligent behaviors in biological systems. We then provide a critical comparison of the available hardware and software to emulate SNNs for investigating biological entities and their application on artificial systems. Neuromorphics is identified as a promising tool to embody SNNs in real physical systems and different neuromorphic chips are compared. The concepts required for describing SNNs are dissected and contextualized in the new no man's land between cognitive neuroscience and artificial intelligence. Although there are recent reviews on the application of neuromorphic computing in various modules of the guidance, navigation, and control of robotic systems, the focus of this paper is more on closing the cognition loop in SNN-embodied robotics. We argue that biologically viable spiking neuronal models used for electroencephalogram signals are excellent candidates for furthering our knowledge of the explainability of SNNs. We complete our survey by reviewing different robotic modules that can benefit from neuromorphic hardware, e.g., perception (with a focus on vision), localization, and cognition. We conclude that the tradeoff between symbolic computational power and biological plausibility of hardware can be best addressed by neuromorphics, whose presence in neurorobotics provides an accountable empirical testbench for investigating synthetic and natural embodied cognition. We argue this is where both theoretical and empirical future work should converge in multidisciplinary efforts involving neuroscience, artificial intelligence, and robotics.

Evaluation of Spiking Neural Nets-Based Image Classification Using the Runtime Simulator RAVSim

Spiking Neural Networks (SNNs) help achieve brain-like efficiency and functionality by building neurons and synapses that mimic the human brain's transmission of electrical signals. However, optimal SNN implementation requires a precise balance of parametric values. To design such ubiquitous neural networks, a graphical tool for visualizing, analyzing, and explaining the internal behavior of spikes is crucial. Although some popular SNN simulators are available, these tools do not allow users to interact with the neural network during simulation. To this end, we have introduced the first runtime interactive simulator, called Runtime Analyzing and Visualization Simulator (RAVSim),a developed to analyze and dynamically visualize the behavior of SNNs, allowing end-users to interact, observe output concentration reactions, and make changes directly during the simulation. In this paper, we present RAVSim with the current implementation of runtime interaction using the LIF neural model with different connectivity schemes, an image classification model using SNNs, and a dataset creation feature. Our main objective is to primarily investigate binary classification using SNNs with RGB images. We created a feed-forward network using the LIF neural model for an image classification algorithm and evaluated it by using RAVSim. The algorithm classifies faces with and without masks, achieving an accuracy of 91.8% using 1000 neurons in a hidden layer, 0.0758 MSE, and an execution time of ∼10[Formula: see text]min on the CPU. The experimental results show that using RAVSim not only increases network design speed but also accelerates user learning capability.

Unsupervised Spiking Neural Network with Dynamic Learning of Inhibitory Neurons

A spiking neural network (SNN) is a type of artificial neural network that operates based on discrete spikes to process timing information, similar to the manner in which the human brain processes real-world problems. In this paper, we propose a new spiking neural network (SNN) based on conventional, biologically plausible paradigms, such as the leaky integrate-and-fire model, spike timing-dependent plasticity, and the adaptive spiking threshold, by suggesting new biological models; that is, dynamic inhibition weight change, a synaptic wiring method, and Bayesian inference. The proposed network is designed for image recognition tasks, which are frequently used to evaluate the performance of conventional deep neural networks. To manifest the bio-realistic neural architecture, the learning is unsupervised, and the inhibition weight is dynamically changed; this, in turn, affects the synaptic wiring method based on Hebbian learning and the neuronal population. In the inference phase, Bayesian inference successfully classifies the input digits by counting the spikes from the responding neurons. The experimental results demonstrate that the proposed biological model ensures a performance improvement compared with other biologically plausible SNN models.

BrainCog: A spiking neural network based, brain-inspired cognitive intelligence engine for brain-inspired AI and brain simulation

Spiking neural networks (SNNs) serve as a promising computational framework for integrating insights from the brain into artificial intelligence (AI). Existing software infrastructures based on SNNs exclusively support brain simulation or brain-inspired AI, but not both simultaneously. To decode the nature of biological intelligence and create AI, we present the brain-inspired cognitive intelligence engine (BrainCog). This SNN-based platform provides essential infrastructure support for developing brain-inspired AI and brain simulation. BrainCog integrates different biological neurons, encoding strategies, learning rules, brain areas, and hardware-software co-design as essential components. Leveraging these user-friendly components, BrainCog incorporates various cognitive functions, including perception and learning, decision-making, knowledge representation and reasoning, motor control, social cognition, and brain structure and function simulations across multiple scales. BORN is an AI engine developed by BrainCog, showcasing seamless integration of BrainCog's components and cognitive functions to build advanced AI models and applications.

BIDL: a brain-inspired deep learning framework for spatiotemporal processing

Brain-inspired deep spiking neural network (DSNN) which emulates the function of the biological brain provides an effective approach for event-stream spatiotemporal perception (STP), especially for dynamic vision sensor (DVS) signals. However, there is a lack of generalized learning frameworks that can handle various spatiotemporal modalities beyond event-stream, such as video clips and 3D imaging data. To provide a unified design flow for generalized spatiotemporal processing (STP) and to investigate the capability of lightweight STP processing via brain-inspired neural dynamics, this study introduces a training platform called brain-inspired deep learning (BIDL). This framework constructs deep neural networks, which leverage neural dynamics for processing temporal information and ensures high-accuracy spatial processing via artificial neural network layers. We conducted experiments involving various types of data, including video information processing, DVS information processing, 3D medical imaging classification, and natural language processing. These experiments demonstrate the efficiency of the proposed method. Moreover, as a research framework for researchers in the fields of neuroscience and machine learning, BIDL facilitates the exploration of different neural models and enables global-local co-learning. For easily fitting to neuromorphic chips and GPUs, the framework incorporates several optimizations, including iteration representation, state-aware computational graph, and built-in neural functions. This study presents a user-friendly and efficient DSNN builder for lightweight STP applications and has the potential to drive future advancements in bio-inspired research.

EdgeMap: An Optimized Mapping Toolchain for Spiking Neural Network in Edge Computing

Spiking neural networks (SNNs) have attracted considerable attention as third-generation artificial neural networks, known for their powerful, intelligent features and energy-efficiency advantages. These characteristics render them ideally suited for edge computing scenarios. Nevertheless, the current mapping schemes for deploying SNNs onto neuromorphic hardware face limitations such as extended execution times, low throughput, and insufficient consideration of energy consumption and connectivity, which undermine their suitability for edge computing applications. To address these challenges, we introduce EdgeMap, an optimized mapping toolchain specifically designed for deploying SNNs onto edge devices without compromising performance. EdgeMap consists of two main stages. The first stage involves partitioning the SNN graph into small neuron clusters based on the streaming graph partition algorithm, with the sizes of neuron clusters limited by the physical neuron cores. In the subsequent mapping stage, we adopt a multi-objective optimization algorithm specifically geared towards mitigating energy costs and communication costs for efficient deployment. EdgeMap-evaluated across four typical SNN applications-substantially outperforms other state-of-the-art mapping schemes. The performance improvements include a reduction in average latency by up to 19.8%, energy consumption by 57%, and communication cost by 58%. Moreover, EdgeMap exhibits an impressive enhancement in execution time by a factor of 1225.44×, alongside a throughput increase of up to 4.02×. These results highlight EdgeMap's efficiency and effectiveness, emphasizing its utility for deploying SNN applications in edge computing scenarios.

SNS-Toolbox: An Open Source Tool for Designing Synthetic Nervous Systems and Interfacing Them with Cyber-Physical Systems

One developing approach for robotic control is the use of networks of dynamic neurons connected with conductance-based synapses, also known as Synthetic Nervous Systems (SNS). These networks are often developed using cyclic topologies and heterogeneous mixtures of spiking and non-spiking neurons, which is a difficult proposition for existing neural simulation software. Most solutions apply to either one of two extremes, the detailed multi-compartment neural models in small networks, and the large-scale networks of greatly simplified neural models. In this work, we present our open-source Python package SNS-Toolbox, which is capable of simulating hundreds to thousands of spiking and non-spiking neurons in real-time or faster on consumer-grade computer hardware. We describe the neural and synaptic models supported by SNS-Toolbox, and provide performance on multiple software and hardware backends, including GPUs and embedded computing platforms. We also showcase two examples using the software, one for controlling a simulated limb with muscles in the physics simulator Mujoco, and another for a mobile robot using ROS. We hope that the availability of this software will reduce the barrier to entry when designing SNS networks, and will increase the prevalence of SNS networks in the field of robotic control.

Selective area doping for Mott neuromorphic electronics

The cointegration of artificial neuronal and synaptic devices with homotypic materials and structures can greatly simplify the fabrication of neuromorphic hardware. We demonstrate experimental realization of vanadium dioxide (VO₂) artificial neurons and synapses on the same substrate through selective area carrier doping. By locally configuring pairs of catalytic and inert electrodes that enable nanoscale control over carrier density, volatility or nonvolatility can be appropriately assigned to each two-terminal Mott memory device per lithographic design, and both neuron- and synapse-like devices are successfully integrated on a single chip. Feedforward excitation and inhibition neural motifs are demonstrated at hardware level, followed by simulation of network-level handwritten digit and fashion product recognition tasks with experimental characteristics. Spatially selective electron doping opens up previously unidentified avenues for integration of emerging correlated semiconductors in electronic device technologies.

Models Developed for Spiking Neural Networks

Emergence of deep neural networks (DNNs) has raised enormous attention towards artificial neural networks (ANNs) once again. They have become the state-of-the-art models and have won different machine learning challenges. Although these networks are inspired by the brain, they lack biological plausibility, and they have structural differences compared to the brain. Spiking neural networks (SNNs) have been around for a long time, and they have been investigated to understand the dynamics of the brain. However, their application in real-world and complicated machine learning tasks were limited. Recently, they have shown great potential in solving such tasks. Due to their energy efficiency and temporal dynamics there are many promises in their future development. In this work, we reviewed the structures and performances of SNNs on image classification tasks. The comparisons illustrate that these networks show great capabilities for more complicated problems. Furthermore, the simple learning rules developed for SNNs, such as STDP and R-STDP, can be a potential alternative to replace the backpropagation algorithm used in DNNs.•Different building blocks of spiking neural networks are explained in this work.•Developed models for SNNs are introduced based on their characteristics and building blocks.

Efficient parameter calibration and real-time simulation of large-scale spiking neural networks with GeNN and NEST

Spiking neural networks (SNNs) represent the state-of-the-art approach to the biologically realistic modeling of nervous system function. The systematic calibration for multiple free model parameters is necessary to achieve robust network function and demands high computing power and large memory resources. Special requirements arise from closed-loop model simulation in virtual environments and from real-time simulation in robotic application. Here, we compare two complementary approaches to efficient large-scale and real-time SNN simulation. The widely used NEural Simulation Tool (NEST) parallelizes simulation across multiple CPU cores. The GPU-enhanced Neural Network (GeNN) simulator uses the highly parallel GPU-based architecture to gain simulation speed. We quantify fixed and variable simulation costs on single machines with different hardware configurations. As a benchmark model, we use a spiking cortical attractor network with a topology of densely connected excitatory and inhibitory neuron clusters with homogeneous or distributed synaptic time constants and in comparison to the random balanced network. We show that simulation time scales linearly with the simulated biological model time and, for large networks, approximately linearly with the model size as dominated by the number of synaptic connections. Additional fixed costs with GeNN are almost independent of model size, while fixed costs with NEST increase linearly with model size. We demonstrate how GeNN can be used for simulating networks with up to 3.5 · 10⁶ neurons (> 3 · 10¹²synapses) on a high-end GPU, and up to 250, 000 neurons (25 · 10⁹ synapses) on a low-cost GPU. Real-time simulation was achieved for networks with 100, 000 neurons. Network calibration and parameter grid search can be efficiently achieved using batch processing. We discuss the advantages and disadvantages of both approaches for different use cases.

Integration of neuromorphic AI in event-driven distributed digitized systems: Concepts and research directions

Increasing complexity and data-generation rates in cyber-physical systems and the industrial Internet of things are calling for a corresponding increase in AI capabilities at the resource-constrained edges of the Internet. Meanwhile, the resource requirements of digital computing and deep learning are growing exponentially, in an unsustainable manner. One possible way to bridge this gap is the adoption of resource-efficient brain-inspired "neuromorphic" processing and sensing devices, which use event-driven, asynchronous, dynamic neurosynaptic elements with colocated memory for distributed processing and machine learning. However, since neuromorphic systems are fundamentally different from conventional von Neumann computers and clock-driven sensor systems, several challenges are posed to large-scale adoption and integration of neuromorphic devices into the existing distributed digital-computational infrastructure. Here, we describe the current landscape of neuromorphic computing, focusing on characteristics that pose integration challenges. Based on this analysis, we propose a microservice-based conceptual framework for neuromorphic systems integration, consisting of a neuromorphic-system proxy, which would provide virtualization and communication capabilities required in distributed systems of systems, in combination with a declarative programming approach offering engineering-process abstraction. We also present concepts that could serve as a basis for the realization of this framework, and identify directions for further research required to enable large-scale system integration of neuromorphic devices.

RescueSNN: enabling reliable executions on spiking neural network accelerators under permanent faults

To maximize the performance and energy efficiency of Spiking Neural Network (SNN) processing on resource-constrained embedded systems, specialized hardware accelerators/chips are employed. However, these SNN chips may suffer from permanent faults which can affect the functionality of weight memory and neuron behavior, thereby causing potentially significant accuracy degradation and system malfunctioning. Such permanent faults may come from manufacturing defects during the fabrication process, and/or from device/transistor damages (e.g., due to wear out) during the run-time operation. However, the impact of permanent faults in SNN chips and the respective mitigation techniques have not been thoroughly investigated yet. Toward this, we propose RescueSNN, a novel methodology to mitigate permanent faults in the compute engine of SNN chips without requiring additional retraining, thereby significantly cutting down the design time and retraining costs, while maintaining the throughput and quality. The key ideas of our RescueSNN methodology are (1) analyzing the characteristics of SNN under permanent faults; (2) leveraging this analysis to improve the SNN fault-tolerance through effective fault-aware mapping (FAM); and (3) devising lightweight hardware enhancements to support FAM. Our FAM technique leverages the fault map of SNN compute engine for (i) minimizing weight corruption when mapping weight bits on the faulty memory cells, and (ii) selectively employing faulty neurons that do not cause significant accuracy degradation to maintain accuracy and throughput, while considering the SNN operations and processing dataflow. The experimental results show that our RescueSNN improves accuracy by up to 80% while maintaining the throughput reduction below 25% in high fault rate (e.g., 0.5 of the potential fault locations), as compared to running SNNs on the faulty chip without mitigation. In this manner, the embedded systems that employ RescueSNN-enhanced chips can efficiently ensure reliable executions against permanent faults during their operational lifetime.

Precise Spiking Motifs in Neurobiological and Neuromorphic Data

Why do neurons communicate through spikes? By definition, spikes are all-or-none neural events which occur at continuous times. In other words, spikes are on one side binary, existing or not without further details, and on the other, can occur at any asynchronous time, without the need for a centralized clock. This stands in stark contrast to the analog representation of values and the discretized timing classically used in digital processing and at the base of modern-day neural networks. As neural systems almost systematically use this so-called event-based representation in the living world, a better understanding of this phenomenon remains a fundamental challenge in neurobiology in order to better interpret the profusion of recorded data. With the growing need for intelligent embedded systems, it also emerges as a new computing paradigm to enable the efficient operation of a new class of sensors and event-based computers, called neuromorphic, which could enable significant gains in computation time and energy consumption-a major societal issue in the era of the digital economy and global warming. In this review paper, we provide evidence from biology, theory and engineering that the precise timing of spikes plays a crucial role in our understanding of the efficiency of neural networks.

Analog-to-spike encoding and time-efficient RF signal processing with photonic neurons

The radio-frequency (RF) signal processing in real time is indispensable for advanced information systems, such as radar and communications. However, the latency performance of conventional processing paradigm is worsened by high-speed analog-to-digital conversion (ADC) generating massive data, and computation-intensive digital processing. Here, we propose to encode and process RF signals harnessing photonic spiking response in fully-analog domain. The dependence of photonic analog-to-spike encoding on threshold level and time constant is theoretically and experimentally investigated. For two classes of waveforms from real RF devices, the photonic spiking neuron exhibits distinct distributions of encoded spike numbers. In a waveform classification task, the photonic-spiking-based scheme achieves an accuracy of 92%, comparable to the K-nearest neighbor (KNN) digital algorithm for 94%, and the processing latency is reduced approximately from 0.7 s (code running time on a CPU platform) to 80 ns (light transmission delay) by more than one million times. It is anticipated that the asynchronous-encoding, and binary-output nature of photonic spiking response could pave the way to real-time RF signal processing.

Training spiking neuronal networks to perform motor control using reinforcement and evolutionary learning

Artificial neural networks (ANNs) have been successfully trained to perform a wide range of sensory-motor behaviors. In contrast, the performance of spiking neuronal network (SNN) models trained to perform similar behaviors remains relatively suboptimal. In this work, we aimed to push the field of SNNs forward by exploring the potential of different learning mechanisms to achieve optimal performance. We trained SNNs to solve the CartPole reinforcement learning (RL) control problem using two learning mechanisms operating at different timescales: (1) spike-timing-dependent reinforcement learning (STDP-RL) and (2) evolutionary strategy (EVOL). Though the role of STDP-RL in biological systems is well established, several other mechanisms, though not fully understood, work in concert during learning in vivo. Recreating accurate models that capture the interaction of STDP-RL with these diverse learning mechanisms is extremely difficult. EVOL is an alternative method and has been successfully used in many studies to fit model neural responsiveness to electrophysiological recordings and, in some cases, for classification problems. One advantage of EVOL is that it may not need to capture all interacting components of synaptic plasticity and thus provides a better alternative to STDP-RL. Here, we compared the performance of each algorithm after training, which revealed EVOL as a powerful method for training SNNs to perform sensory-motor behaviors. Our modeling opens up new capabilities for SNNs in RL and could serve as a testbed for neurobiologists aiming to understand multi-timescale learning mechanisms and dynamics in neuronal circuits.

EvtSNN: Event-driven SNN simulator optimized by population and pre-filtering

Recently, spiking neural networks (SNNs) have been widely studied by researchers due to their biological interpretability and potential application of low power consumption. However, the traditional clock-driven simulators have the problem that the accuracy is limited by the time-step and the lateral inhibition failure. To address this issue, we introduce EvtSNN (Event SNN), a faster SNN event-driven simulator inspired by EDHA (Event-Driven High Accuracy). Two innovations are proposed to accelerate the calculation of event-driven neurons. Firstly, the intermediate results can be reused in population computing without repeated calculations. Secondly, unnecessary peak calculations will be skipped according to a condition. In the MNIST classification task, EvtSNN took 56 s to complete one epoch of unsupervised training and achieved 89.56% accuracy, while EDHA takes 642 s. In the benchmark experiments, the simulation speed of EvtSNN is 2.9–14.0 times that of EDHA under different network scales.

EnforceSNN: Enabling resilient and energy-efficient spiking neural network inference considering approximate DRAMs for embedded systems

Spiking Neural Networks (SNNs) have shown capabilities of achieving high accuracy under unsupervised settings and low operational power/energy due to their bio-plausible computations. Previous studies identified that DRAM-based off-chip memory accesses dominate the energy consumption of SNN processing. However, state-of-the-art works do not optimize the DRAM energy-per-access, thereby hindering the SNN-based systems from achieving further energy efficiency gains. To substantially reduce the DRAM energy-per-access, an effective solution is to decrease the DRAM supply voltage, but it may lead to errors in DRAM cells (i.e., so-called approximate DRAM). Toward this, we propose EnforceSNN, a novel design framework that provides a solution for resilient and energy-efficient SNN inference using reduced-voltage DRAM for embedded systems. The key mechanisms of our EnforceSNN are: (1) employing quantized weights to reduce the DRAM access energy; (2) devising an efficient DRAM mapping policy to minimize the DRAM energy-per-access; (3) analyzing the SNN error tolerance to understand its accuracy profile considering different bit error rate (BER) values; (4) leveraging the information for developing an efficient fault-aware training (FAT) that considers different BER values and bit error locations in DRAM to improve the SNN error tolerance; and (5) developing an algorithm to select the SNN model that offers good trade-offs among accuracy, memory, and energy consumption. The experimental results show that our EnforceSNN maintains the accuracy (i.e., no accuracy loss for BER ≤ 10−3) as compared to the baseline SNN with accurate DRAM while achieving up to 84.9% of DRAM energy saving and up to 4.1x speed-up of DRAM data throughput across different network sizes.

A heuristic approach to the hyperparameters in training spiking neural networks using spike-timing-dependent plasticity

The third type of neural network called spiking is developed due to a more accurate representation of neuronal activity in living organisms. Spiking neural networks have many different parameters that can be difficult to adjust manually to the current classification problem. The analysis and selection of coefficients’ values in the network can be analyzed as an optimization problem. A practical method for automatic selection of them can decrease the time needed to develop such a model. In this paper, we propose the use of a heuristic approach to analyze and select coefficients with the idea of collaborative working. The proposed idea is based on parallel analyzing of different coefficients and choosing the best of them or average ones. This type of optimization problem allows the selection of all variables, which can significantly affect the convergence of the accuracy. Our proposal was tested using network simulators and popular databases to indicate the possibilities of the described approach. Five different heuristic algorithms were tested and the best results were reached by Cuckoo Search Algorithm, Grasshopper Optimization Algorithm, and Polar Bears Algorithm.

Spiking Neural Networks and Their Applications: A Review

The past decade has witnessed the great success of deep neural networks in various domains. However, deep neural networks are very resource-intensive in terms of energy consumption, data requirements, and high computational costs. With the recent increasing need for the autonomy of machines in the real world, e.g., self-driving vehicles, drones, and collaborative robots, exploitation of deep neural networks in those applications has been actively investigated. In those applications, energy and computational efficiencies are especially important because of the need for real-time responses and the limited energy supply. A promising solution to these previously infeasible applications has recently been given by biologically plausible spiking neural networks. Spiking neural networks aim to bridge the gap between neuroscience and machine learning, using biologically realistic models of neurons to carry out the computation. Due to their functional similarity to the biological neural network, spiking neural networks can embrace the sparsity found in biology and are highly compatible with temporal code. Our contributions in this work are: (i) we give a comprehensive review of theories of biological neurons; (ii) we present various existing spike-based neuron models, which have been studied in neuroscience; (iii) we detail synapse models; (iv) we provide a review of artificial neural networks; (v) we provide detailed guidance on how to train spike-based neuron models; (vi) we revise available spike-based neuron frameworks that have been developed to support implementing spiking neural networks; (vii) finally, we cover existing spiking neural network applications in computer vision and robotics domains. The paper concludes with discussions of future perspectives.

A Scalable Approach to Modeling on Accelerated Neuromorphic Hardware

Neuromorphic systems open up opportunities to enlarge the explorative space for computational research. However, it is often challenging to unite efficiency and usability. This work presents the software aspects of this endeavor for the BrainScaleS-2 system, a hybrid accelerated neuromorphic hardware architecture based on physical modeling. We introduce key aspects of the BrainScaleS-2 Operating System: experiment workflow, API layering, software design, and platform operation. We present use cases to discuss and derive requirements for the software and showcase the implementation. The focus lies on novel system and software features such as multi-compartmental neurons, fast re-configuration for hardware-in-the-loop training, applications for the embedded processors, the non-spiking operation mode, interactive platform access, and sustainable hardware/software co-development. Finally, we discuss further developments in terms of hardware scale-up, system usability, and efficiency.

Neuroevolution Guided Hybrid Spiking Neural Network Training

Neuromorphic computing algorithms based on Spiking Neural Networks (SNNs) are evolving to be a disruptive technology driving machine learning research. The overarching goal of this work is to develop a structured algorithmic framework for SNN training that optimizes unique SNN-specific properties like neuron spiking threshold using neuroevolution as a feedback strategy. We provide extensive results for this hybrid bio-inspired training strategy and show that such a feedback-based learning approach leads to explainable neuromorphic systems that adapt to the specific underlying application. Our analysis reveals 53.8, 28.8, and 28.2% latency improvement for the neuroevolution-based SNN training strategy on CIFAR-10, CIFAR-100, and ImageNet datasets, respectively in contrast to state-of-the-art conversion based approaches. The proposed algorithm can be easily extended to other application domains like image classification in presence of adversarial attacks where 43.2 and 27.9% latency improvements were observed on CIFAR-10 and CIFAR-100 datasets, respectively.

Advancements in Algorithms and Neuromorphic Hardware for Spiking Neural Networks

Artificial neural networks (ANNs) have experienced a rapid advancement for their success in various application domains, including autonomous driving and drone vision. Researchers have been improving the performance efficiency and computational requirement of ANNs inspired by the mechanisms of the biological brain. Spiking neural networks (SNNs) provide a power-efficient and brain-inspired computing paradigm for machine learning applications. However, evaluating large-scale SNNs on classical von Neumann architectures (central processing units/graphics processing units) demands a high amount of power and time. Therefore, hardware designers have developed neuromorphic platforms to execute SNNs in and approach that combines fast processing and low power consumption. Recently, field-programmable gate arrays (FPGAs) have been considered promising candidates for implementing neuromorphic solutions due to their varied advantages, such as higher flexibility, shorter design, and excellent stability. This review aims to describe recent advances in SNNs and the neuromorphic hardware platforms (digital, analog, hybrid, and FPGA based) suitable for their implementation. We present that biological background of SNN learning, such as neuron models and information encoding techniques, followed by a categorization of SNN training. In addition, we describe state-of-the-art SNN simulators. Furthermore, we review and present FPGA-based hardware implementation of SNNs. Finally, we discuss some future directions for research in this field.

Fault Injection Attacks in Spiking Neural Networks and Countermeasures

Spiking Neural Networks (SNN) are fast emerging as an alternative option to Deep Neural Networks (DNN). They are computationally more powerful and provide higher energy-efficiency than DNNs. While exciting at first glance, SNNs contain security-sensitive assets (e.g., neuron threshold voltage) and vulnerabilities (e.g., sensitivity of classification accuracy to neuron threshold voltage change) that can be exploited by the adversaries. We explore global fault injection attacks using external power supply and laser-induced local power glitches on SNN designed using common analog neurons to corrupt critical training parameters such as spike amplitude and neuron’s membrane threshold potential. We also analyze the impact of power-based attacks on the SNN for digit classification task and observe a worst-case classification accuracy degradation of −85.65%. We explore the impact of various design parameters of SNN (e.g., learning rate, spike trace decay constant, and number of neurons) and identify design choices for robust implementation of SNN. We recover classification accuracy degradation by 30–47% for a subset of power-based attacks by modifying SNN training parameters such as learning rate, trace decay constant, and neurons per layer. We also propose hardware-level defenses, e.g., a robust current driver design that is immune to power-oriented attacks, improved circuit sizing of neuron components to reduce/recover the adversarial accuracy degradation at the cost of negligible area, and 25% power overhead. We also propose a dummy neuron-based detection of voltage fault injection at ∼1% power and area overhead each.

Evolutionary Advantages of Stimulus-Driven EEG Phase Transitions in the Upper Cortical Layers

Spatio-temporal brain activity monitored by EEG recordings in humans and other mammals has identified beta/gamma oscillations (20-80 Hz), which are self-organized into spatio-temporal structures recurring at theta/alpha rates (4-12 Hz). These structures have statistically significant correlations with sensory stimuli and reinforcement contingencies perceived by the subject. The repeated collapse of self-organized structures at theta/alpha rates generates laterally propagating phase gradients (phase cones), ignited at some specific location of the cortical sheet. Phase cones have been interpreted as neural signatures of transient perceptual experiences according to the cinematic theory of brain dynamics. The rapid expansion of essentially isotropic phase cones is consistent with the propagation of perceptual broadcasts postulated by Global Workspace Theory (GWT). What is the evolutionary advantage of brains operating with repeatedly collapsing dynamics? This question is answered using thermodynamic concepts. According to neuropercolation theory, waking brains are described as non-equilibrium thermodynamic systems operating at the edge of criticality, undergoing repeated phase transitions. This work analyzes the role of long-range axonal connections and metabolic processes in the regulation of critical brain dynamics. Historically, the near 10 Hz domain has been associated with conscious sensory integration, cortical "ignitions" linked to conscious visual perception, and conscious experiences. We can therefore combine a very large body of experimental evidence and theory, including graph theory, neuropercolation, and GWT. This cortical operating style may optimize a tradeoff between rapid adaptation to novelty vs. stable and widespread self-organization, therefore resulting in significant Darwinian benefits.

Spiking Neural Networks for Computational Intelligence: An Overview

Deep neural networks with rate-based neurons have exhibited tremendous progress in the last decade. However, the same level of progress has not been observed in research on spiking neural networks (SNN), despite their capability to handle temporal data, energy-efficiency and low latency. This could be because the benchmarking techniques for SNNs are based on the methods used for evaluating deep neural networks, which do not provide a clear evaluation of the capabilities of SNNs. Particularly, the benchmarking of SNN approaches with regards to energy efficiency and latency requires realization in suitable hardware, which imposes additional temporal and resource constraints upon ongoing projects. This review aims to provide an overview of the current real-world applications of SNNs and identifies steps to accelerate research involving SNNs in the future.

PymoNNto: A Flexible Modular Toolbox for Designing Brain-Inspired Neural Networks

The Python Modular Neural Network Toolbox (PymoNNto) provides a versatile and adaptable Python-based framework to develop and investigate brain-inspired neural networks. In contrast to other commonly used simulators such as Brian2 and NEST, PymoNNto imposes only minimal restrictions for implementation and execution. The basic structure of PymoNNto consists of one network class with several neuron- and synapse-groups. The behaviour of each group can be flexibly defined by exchangeable modules. The implementation of these modules is up to the user and only limited by Python itself. Behaviours can be implemented in Python, Numpy, Tensorflow, and other libraries to perform computations on CPUs and GPUs. PymoNNto comes with convenient high level behaviour modules, allowing differential equation-based implementations similar to Brian2, and an adaptable modular Graphical User Interface for real-time observation and modification of the simulated network and its parameters.

EDHA: Event-Driven High Accurate Simulator for Spike Neural Networks

In recent years, spiking neural networks (SNNs) have attracted increasingly more researchers to study by virtue of its bio-interpretability and low-power computing. The SNN simulator is an essential tool to accomplish image classification, recognition, speech recognition, and other tasks using SNN. However, most of the existing simulators for spike neural networks are clock-driven, which has two main problems. First, the calculation result is affected by time slice, which obviously shows that when the calculation accuracy is low, the calculation speed is fast, but when the calculation accuracy is high, the calculation speed is unacceptable. The other is the failure of lateral inhibition, which severely affects SNN learning. In order to solve these problems, an event-driven high accurate simulator named EDHA (Event-Driven High Accuracy) for spike neural networks is proposed in this paper. EDHA takes full advantage of the event-driven characteristics of SNN and only calculates when a spike is generated, which is independent of the time slice. Compared with previous SNN simulators, EDHA is completely event-driven, which reduces a large amount of calculations and achieves higher computational accuracy. The calculation speed of EDHA in the MNIST classification task is more than 10 times faster than that of mainstream clock-driven simulators. By optimizing the spike encoding method, the former can even achieve more than 100 times faster than the latter. Due to the cross-platform characteristics of Java, EDHA can run on x86, amd64, ARM, and other platforms that support Java.

An Extended Modular Processing Pipeline for Event-Based Vision in Automatic Visual Inspection

Dynamic Vision Sensors differ from conventional cameras in that only intensity changes of individual pixels are perceived and transmitted as an asynchronous stream instead of an entire frame. The technology promises, among other things, high temporal resolution and low latencies and data rates. While such sensors currently enjoy much scientific attention, there are only little publications on practical applications. One field of application that has hardly been considered so far, yet potentially fits well with the sensor principle due to its special properties, is automatic visual inspection. In this paper, we evaluate current state-of-the-art processing algorithms in this new application domain. We further propose an algorithmic approach for the identification of ideal time windows within an event stream for object classification. For the evaluation of our method, we acquire two novel datasets that contain typical visual inspection scenarios, i.e., the inspection of objects on a conveyor belt and during free fall. The success of our algorithmic extension for data processing is demonstrated on the basis of these new datasets by showing that classification accuracy of current algorithms is highly increased. By making our new datasets publicly available, we intend to stimulate further research on application of Dynamic Vision Sensors in machine vision applications.

Toward Robust Cognitive 3D Brain-Inspired Cross-Paradigm System

Spiking Neuromorphic systems have been introduced as promising platforms for energy-efficient spiking neural network (SNNs) execution. SNNs incorporate neuronal and synaptic states in addition to the variant time scale into their computational model. Since each neuron in these networks is connected to many others, high bandwidth is required. Moreover, since the spike times are used to encode information in SNN, a precise communication latency is also needed, although SNN is tolerant to the spike delay variation in some limits when it is seen as a whole. The two-dimensional packet-switched network-on-chip was proposed as a solution to provide a scalable interconnect fabric in large-scale spike-based neural networks. The 3D-ICs have also attracted a lot of attention as a potential solution to resolve the interconnect bottleneck. Combining these two emerging technologies provides a new horizon for IC design to satisfy the high requirements of low power and small footprint in emerging AI applications. Moreover, although fault-tolerance is a natural feature of biological systems, integrating many computation and memory units into neuromorphic chips confronts the reliability issue, where a defective part can affect the overall system's performance. This paper presents the design and simulation of R-NASH-a reliable three-dimensional digital neuromorphic system geared explicitly toward the 3D-ICs biological brain's three-dimensional structure, where information in the network is represented by sparse patterns of spike timing and learning is based on the local spike-timing-dependent-plasticity rule. Our platform enables high integration density and small spike delay of spiking networks and features a scalable design. R-NASH is a design based on the Through-Silicon-Via technology, facilitating spiking neural network implementation on clustered neurons based on Network-on-Chip. We provide a memory interface with the host CPU, allowing for online training and inference of spiking neural networks. Moreover, R-NASH supports fault recovery with graceful performance degradation.

The overfitted brain: Dreams evolved to assist generalization

Understanding of the evolved biological function of sleep has advanced considerably in the past decade. However, no equivalent understanding of dreams has emerged. Contemporary neuroscientific theories often view dreams as epiphenomena, and many of the proposals for their biological function are contradicted by the phenomenology of dreams themselves. Now, the recent advent of deep neural networks (DNNs) has finally provided the novel conceptual framework within which to understand the evolved function of dreams. Notably, all DNNs face the issue of overfitting as they learn, which is when performance on one dataset increases but the network's performance fails to generalize (often measured by the divergence of performance on training versus testing datasets). This ubiquitous problem in DNNs is often solved by modelers via "noise injections" in the form of noisy or corrupted inputs. The goal of this paper is to argue that the brain faces a similar challenge of overfitting and that nightly dreams evolved to combat the brain's overfitting during its daily learning. That is, dreams are a biological mechanism for increasing generalizability via the creation of corrupted sensory inputs from stochastic activity across the hierarchy of neural structures. Sleep loss, specifically dream loss, leads to an overfitted brain that can still memorize and learn but fails to generalize appropriately. Herein this "overfitted brain hypothesis" is explicitly developed and then compared and contrasted with existing contemporary neuroscientific theories of dreams. Existing evidence for the hypothesis is surveyed within both neuroscience and deep learning, and a set of testable predictions is put forward that can be pursued both in vivo and in silico.

Using machine learning methods to predict nonhome discharge after elective total shoulder arthroplasty

Background

Machine learning has shown potential in accurately predicting outcomes after orthopedic surgery, thereby allowing for improved patient selection, risk stratification, and preoperative planning. This study sought to develop machine learning models to predict nonhome discharge after total shoulder arthroplasty (TSA).

Methods

The American College of Surgeons National Surgical Quality Improvement Program database was queried for patients who underwent elective TSA from 2012 to 2018. Boosted decision tree and artificial neural networks (ANN) machine learning models were developed to predict non-home discharge and 30-day postoperative complications. Model performance was measured using the area under the receiver operating characteristic curve (AUC) and overall accuracy (%). Multivariate binary logistic regression analyses were used to identify variables that were significantly associated with the predicted outcomes.

Results

There were 21,544 elective TSA cases identified in the National Surgical Quality Improvement Program registry from 2012 to 2018 that met inclusion criteria. Multivariate logistic regression identified several variables associated with increased risk of nonhome discharge including female sex (odds ratio [OR] = 2.83; 95% confidence interval [CI] = 2.53-3.17; P < .001), age older than 70 years (OR = 3.19; 95% CI = 2.86-3.57; P < .001), American Society of Anesthesiologists classification 3 or greater (OR = 2.70; 95% CI = 2.41-2.03; P < .001), prolonged operative time (OR = 1.38; 95% CI = 1.20-1.58; P < .001), as well as history of diabetes (OR = 1.56; 95% CI = 1.38-1.75; P < .001), chronic obstructive pulmonary disease (OR = 1.71; 95% CI = 1.46-2.01; P < .001), congestive heart failure (OR = 2.65; 95% CI = 1.72-4.01; P < .001), hypertension (OR = 1.35; 95% CI = 1.20-1.52; P = .004), dialysis (OR = 3.58; 95% CI = 2.01-6.39; P = .002), wound infection (OR = 5.67; 95% CI = 3.46-9.29; P < .001), steroid use (OR = 1.43; 95% CI = 1.18-1.74; P = .010), and bleeding disorder (OR = 1.84; 95% CI = 1.45-2.34; P < .001). The boosted decision tree model for predicting nonhome discharge had an AUC of 0.788 and an overall accuracy of 90.3%. The ANN model for predicting nonhome discharge had an AUC of 0.851 and an overall accuracy of 89.9%. For predicting the occurrence of 1 or more postoperative complications, the boosted decision tree model had an AUC of 0.795 and an overall accuracy of 95.5%. The ANN model yielded an AUC of 0.788 and an overall accuracy of 92.5%.

Conclusions

Both the boosted decision tree and ANN models performed well in predicting nonhome discharge with similar overall accuracy, but the ANN had higher discriminative ability. Based on the findings of this study, machine learning has the potential to accurately predict nonhome discharge after elective TSA. Surgeons can use such tools to guide patient expectations and to improve preoperative discharge planning, with the ultimate goal of decreasing hospital length of stay and improving cost-efficiency.

A neutrophil activation signature predicts critical illness and mortality in COVID-19

Pathologic immune hyperactivation is emerging as a key feature of critical illness in COVID-19, but the mechanisms involved remain poorly understood. We carried out proteomic profiling of plasma from cross-sectional and longitudinal cohorts of hospitalized patients with COVID-19 and analyzed clinical data from our health system database of more than 3300 patients. Using a machine learning algorithm, we identified a prominent signature of neutrophil activation, including resistin, lipocalin-2, hepatocyte growth factor, interleukin-8, and granulocyte colony-stimulating factor, which were the strongest predictors of critical illness. Evidence of neutrophil activation was present on the first day of hospitalization in patients who would only later require transfer to the intensive care unit, thus preceding the onset of critical illness and predicting increased mortality. In the health system database, early elevations in developing and mature neutrophil counts also predicted higher mortality rates. Altogether, these data suggest a central role for neutrophil activation in the pathogenesis of severe COVID-19 and identify molecular markers that distinguish patients at risk of future clinical decompensation.

Vaccine targeting SIVmac251 protease cleavage sites protects macaques against vaginal infection

After over 3 decades of research, an effective anti-HIV vaccine remains elusive. The recently halted HVTN702 clinical trial not only further stresses the challenge to develop an effective HIV vaccine but also emphasizes that unconventional and novel vaccine strategies are urgently needed. Here, we report that a vaccine focusing the immune response on the sequences surrounding the 12 viral protease cleavage sites (PCSs) provided greater than 80% protection to Mauritian cynomolgus macaques against repeated intravaginal SIVmac251 challenges. The PCS-specific T cell responses correlated with vaccine efficacy. The PCS vaccine did not induce immune activation or inflammation known to be associated with increased susceptibility to HIV infection. Machine learning analyses revealed that the immune microenvironment generated by the PCS vaccine was predictive of vaccine efficacy. Our study demonstrates, for the first time to our knowledge, that a vaccine which targets only viral maturation, but lacks full-length Env and Gag immunogens, can prevent intravaginal infection in a stringent macaque/SIV challenge model. Targeting HIV maturation thus offers a potentially novel approach to developing an effective HIV vaccine.

Prediction of Lymph-Node Metastasis in Cancers Using Differentially Expressed mRNA and Non-coding RNA Signatures

Accurate prediction of lymph-node metastasis in cancers is pivotal for the next targeted clinical interventions that allow favorable prognosis for patients. Different molecular profiles (mRNA and non-coding RNAs) have been widely used to establish classifiers for cancer prediction (e.g., tumor origin, cancerous or non-cancerous state, cancer subtype). However, few studies focus on lymphatic metastasis evaluation using these profiles, and the performance of classifiers based on different profiles has also not been compared. Here, differentially expressed mRNAs, miRNAs, and lncRNAs between lymph-node metastatic and non-metastatic groups were identified as molecular signatures to construct classifiers for lymphatic metastasis prediction in different cancers. With this similar feature selection strategy, support vector machine (SVM) classifiers based on different profiles were systematically compared in their prediction performance. For representative cancers (a total of nine types), these classifiers achieved comparative overall accuracies of 81.00% (67.96-92.19%), 81.97% (70.83-95.24%), and 80.78% (69.61-90.00%) on independent mRNA, miRNA, and lncRNA datasets, with a small set of biomarkers (6, 12, and 4 on average). Therefore, our proposed feature selection strategies are economical and efficient to identify biomarkers that aid in developing competitive classifiers for predicting lymph-node metastasis in cancers. A user-friendly webserver was also deployed to help researchers in metastasis risk determination by submitting their expression profiles of different origins.

Generalisation and robustness investigation for facial and speech emotion recognition using bio-inspired spiking neural networks

Emotion recognition through facial expression and non-verbal speech represents an important area in affective computing. They have been extensively studied from classical feature extraction techniques to more recent deep learning approaches. However, most of these approaches face two major challenges: (1) robustness—in the face of degradation such as noise, can a model still make correct predictions? and (2) cross-dataset generalisation—when a model is trained on one dataset, can it be used to make inference on another dataset?. To directly address these challenges, we first propose the application of a spiking neural network (SNN) in predicting emotional states based on facial expression and speech data, then investigate, and compare their accuracy when facing data degradation or unseen new input. We evaluate our approach on third-party, publicly available datasets and compare to the state-of-the-art techniques. Our approach demonstrates robustness to noise, where it achieves an accuracy of 56.2% for facial expression recognition (FER) compared to 22.64% and 14.10% for CNN and SVM, respectively, when input images are degraded with the noise intensity of 0.5, and the highest accuracy of 74.3% for speech emotion recognition (SER) compared to 21.95% of CNN and 14.75% for SVM when audio white noise is applied. For generalisation, our approach achieves consistently high accuracy of 89% for FER and 70% for SER in cross-dataset evaluation and suggests that it can learn more effective feature representations, which lead to good generalisation of facial features and vocal characteristics across subjects.

On the Self-Repair Role of Astrocytes in STDP Enabled Unsupervised SNNs

Neuromorphic computing is emerging to be a disruptive computational paradigm that attempts to emulate various facets of the underlying structure and functionalities of the brain in the algorithm and hardware design of next-generation machine learning platforms. This work goes beyond the focus of current neuromorphic computing architectures on computational models for neuron and synapse to examine other computational units of the biological brain that might contribute to cognition and especially self-repair. We draw inspiration and insights from computational neuroscience regarding functionalities of glial cells and explore their role in the fault-tolerant capacity of Spiking Neural Networks (SNNs) trained in an unsupervised fashion using Spike-Timing Dependent Plasticity (STDP). We characterize the degree of self-repair that can be enabled in such networks with varying degree of faults ranging from 50 to 90% and evaluate our proposal on the MNIST and Fashion-MNIST datasets.

A neutrophil activation signature predicts critical illness and mortality in COVID-19

Pathologic immune hyperactivation is emerging as a key feature of critical illness in COVID-19, but the mechanisms involved remain poorly understood. We carried out proteomic profiling of plasma from cross-sectional and longitudinal cohorts of hospitalized patients with COVID-19 and analyzed clinical data from our health system database of over 3,300 patients. Using a machine learning algorithm, we identified a prominent signature of neutrophil activation, including resistin, lipocalin-2, HGF, IL-8, and G-CSF, as the strongest predictors of critical illness. Neutrophil activation was present on the first day of hospitalization in patients who would only later require transfer to the intensive care unit, thus preceding the onset of critical illness and predicting increased mortality. In the health system database, early elevations in developing and mature neutrophil counts also predicted higher mortality rates. Altogether, we define an essential role for neutrophil activation in the pathogenesis of severe COVID-19 and identify molecular neutrophil markers that distinguish patients at risk of future clinical decompensation.