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For: Kim BH, Ye JC. Understanding Graph Isomorphism Network for rs-fMRI Functional Connectivity Analysis. Front Neurosci 2020;14:630. [PMID: 32714130 PMCID: PMC7344313 DOI: 10.3389/fnins.2020.00630] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Accepted: 05/22/2020] [Indexed: 01/24/2023]  Open
Number Cited by Other Article(s)
1
Gamgam G, Yıldırım Z, Kabakçıoğlu A, Gurvit H, Demiralp T, Acar B. Siamese Graph Convolutional Network quantifies increasing structure-function discrepancy over the cognitive decline continuum. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024;254:108290. [PMID: 38954916 DOI: 10.1016/j.cmpb.2024.108290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 05/09/2024] [Accepted: 06/16/2024] [Indexed: 07/04/2024]
2
Cinaglia P. PyMulSim: a method for computing node similarities between multilayer networks via graph isomorphism networks. BMC Bioinformatics 2024;25:211. [PMID: 38872090 PMCID: PMC11170789 DOI: 10.1186/s12859-024-05830-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 06/10/2024] [Indexed: 06/15/2024]  Open
3
Chen Y, Yan J, Jiang M, Zhang T, Zhao Z, Zhao W, Zheng J, Yao D, Zhang R, Kendrick KM, Jiang X. Adversarial Learning Based Node-Edge Graph Attention Networks for Autism Spectrum Disorder Identification. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024;35:7275-7286. [PMID: 35286265 DOI: 10.1109/tnnls.2022.3154755] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
4
Yuan X, Chen M, Ding P, Gan A, Gong A, Chu Z, Nan W, Fu Y, Cheng Y. Cross-Domain Identification of Multisite Major Depressive Disorder Using End-to-End Brain Dynamic Attention Network. IEEE Trans Neural Syst Rehabil Eng 2024;32:33-42. [PMID: 38090844 DOI: 10.1109/tnsre.2023.3341923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2024]
5
Zhang J, Wang Q, Wang X, Qiao L, Liu M. Preserving specificity in federated graph learning for fMRI-based neurological disorder identification. Neural Netw 2024;169:584-596. [PMID: 37956575 DOI: 10.1016/j.neunet.2023.11.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 10/22/2023] [Accepted: 11/03/2023] [Indexed: 11/15/2023]
6
Duan J, Li Y, Zhang X, Dong S, Zhao P, Liu J, Zheng J, Zhu R, Kong Y, Wang F. Predicting treatment response in adolescents and young adults with major depressive episodes from fMRI using graph isomorphism network. Neuroimage Clin 2023;40:103534. [PMID: 37939442 PMCID: PMC10665904 DOI: 10.1016/j.nicl.2023.103534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 10/30/2023] [Accepted: 10/30/2023] [Indexed: 11/10/2023]
7
Wang Q, Wu M, Fang Y, Wang W, Qiao L, Liu M. Modularity-Constrained Dynamic Representation Learning for Interpretable Brain Disorder Analysis with Functional MRI. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION : MICCAI ... INTERNATIONAL CONFERENCE ON MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION 2023;14220:46-56. [PMID: 38390374 PMCID: PMC10883232 DOI: 10.1007/978-3-031-43907-0_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/24/2024]
8
Ma Y, Wang Q, Cao L, Li L, Zhang C, Qiao L, Liu M. Multi-Scale Dynamic Graph Learning for Brain Disorder Detection With Functional MRI. IEEE Trans Neural Syst Rehabil Eng 2023;31:3501-3512. [PMID: 37643109 DOI: 10.1109/tnsre.2023.3309847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
9
Venkatraman V. FP-MAP: an extensive library of fingerprint-based molecular activity prediction tools. Front Chem 2023;11:1239467. [PMID: 37649967 PMCID: PMC10462816 DOI: 10.3389/fchem.2023.1239467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Accepted: 07/31/2023] [Indexed: 09/01/2023]  Open
10
Mahmood U, Fu Z, Calhoun V, Plis S. GLACIER: GLASS-BOX TRANSFORMER FOR INTERPRETABLE DYNAMIC NEUROIMAGING. PROCEEDINGS OF THE ... IEEE INTERNATIONAL CONFERENCE ON ACOUSTICS, SPEECH, AND SIGNAL PROCESSING. ICASSP (CONFERENCE) 2023;2023:10.1109/icassp49357.2023.10097126. [PMID: 37266485 PMCID: PMC10231935 DOI: 10.1109/icassp49357.2023.10097126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
11
Zaripova K, Cosmo L, Kazi A, Ahmadi SA, Bronstein MM, Navab N. Graph-in-Graph (GiG): Learning interpretable latent graphs in non-Euclidean domain for biological and healthcare applications. Med Image Anal 2023;88:102839. [PMID: 37263109 DOI: 10.1016/j.media.2023.102839] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2022] [Revised: 04/26/2023] [Accepted: 05/06/2023] [Indexed: 06/03/2023]
12
Qian J, Li H, Wang J, He L. Recent Advances in Explainable Artificial Intelligence for Magnetic Resonance Imaging. Diagnostics (Basel) 2023;13:1571. [PMID: 37174962 PMCID: PMC10178221 DOI: 10.3390/diagnostics13091571] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 03/29/2023] [Accepted: 04/26/2023] [Indexed: 05/15/2023]  Open
13
Wu D, Li X. Graph propagation network captures individual specificity of the relationship between functional and structural connectivity. Hum Brain Mapp 2023;44:3885-3896. [PMID: 37186004 DOI: 10.1002/hbm.26320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Revised: 04/06/2023] [Accepted: 04/12/2023] [Indexed: 05/17/2023]  Open
14
Torres L, Arrais JP, Ribeiro B. Few-shot learning via graph embeddings with convolutional networks for low-data molecular property prediction. Neural Comput Appl 2023. [DOI: 10.1007/s00521-023-08403-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
15
Zhao M, Wang L, Jiang Z, Li R, Lu X, Hu Z. Multi-task learning with graph attention networks for multi-domain task-oriented dialogue systems. Knowl Based Syst 2023. [DOI: 10.1016/j.knosys.2022.110069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
16
Venkatapathy S, Votinov M, Wagels L, Kim S, Lee M, Habel U, Ra IH, Jo HG. Ensemble graph neural network model for classification of major depressive disorder using whole-brain functional connectivity. Front Psychiatry 2023;14:1125339. [PMID: 37032921 PMCID: PMC10077869 DOI: 10.3389/fpsyt.2023.1125339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 03/02/2023] [Indexed: 04/11/2023]  Open
17
Mahmood U, Fu Z, Ghosh S, Calhoun V, Plis S. Through the looking glass: Deep interpretable dynamic directed connectivity in resting fMRI. Neuroimage 2022;264:119737. [PMID: 36356823 PMCID: PMC9844250 DOI: 10.1016/j.neuroimage.2022.119737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 11/01/2022] [Accepted: 11/06/2022] [Indexed: 11/09/2022]  Open
18
Kwon H, Kim JI, Son SY, Jang YH, Kim BN, Lee HJ, Lee JM. Sparse Hierarchical Representation Learning on Functional Brain Networks for Prediction of Autism Severity Levels. Front Neurosci 2022;16:935431. [PMID: 35873817 PMCID: PMC9301472 DOI: 10.3389/fnins.2022.935431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 06/13/2022] [Indexed: 11/13/2022]  Open
19
Identification of Young High-Functioning Autism Individuals Based on Functional Connectome Using Graph Isomorphism Network: A Pilot Study. Brain Sci 2022;12:brainsci12070883. [PMID: 35884690 PMCID: PMC9315722 DOI: 10.3390/brainsci12070883] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 06/24/2022] [Accepted: 06/30/2022] [Indexed: 02/07/2023]  Open
20
Demir A, Koike-Akino T, Wang Y, Erdogmus D. EEG-GAT: Graph Attention Networks for Classification of Electroencephalogram (EEG) Signals. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022;2022:30-35. [PMID: 36086201 DOI: 10.1109/embc48229.2022.9871984] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
21
van der Velden BH, Kuijf HJ, Gilhuijs KG, Viergever MA. Explainable artificial intelligence (XAI) in deep learning-based medical image analysis. Med Image Anal 2022;79:102470. [DOI: 10.1016/j.media.2022.102470] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 03/15/2022] [Accepted: 05/02/2022] [Indexed: 12/11/2022]
22
Tao TL, Guo LH, He Q, Zhang H, Xu L. Seizure detection by brain-connectivity analysis using dynamic graph isomorphism network. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2022;2022:2302-2305. [PMID: 36086224 DOI: 10.1109/embc48229.2022.9871701] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
23
Wein S, Schüller A, Tomé AM, Malloni WM, Greenlee MW, Lang EW. Forecasting brain activity based on models of spatiotemporal brain dynamics: A comparison of graph neural network architectures. Netw Neurosci 2022;6:665-701. [PMID: 36607180 PMCID: PMC9810370 DOI: 10.1162/netn_a_00252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 05/02/2022] [Indexed: 01/10/2023]  Open
24
A deep graph neural network architecture for modelling spatio-temporal dynamics in resting-state functional MRI data. Med Image Anal 2022;79:102471. [PMID: 35580429 DOI: 10.1016/j.media.2022.102471] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2020] [Revised: 04/11/2022] [Accepted: 05/02/2022] [Indexed: 11/23/2022]
25
Gao Y, Tang Y, Zhang H, Yang Y, Dong T, Jia Q. Sex Differences of Cerebellum and Cerebrum: Evidence from Graph Convolutional Network. Interdiscip Sci 2022;14:532-544. [PMID: 35103919 DOI: 10.1007/s12539-021-00498-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Revised: 12/21/2021] [Accepted: 12/24/2021] [Indexed: 06/14/2023]
26
A new approach for APT malware detection based on deep graph network for endpoint systems. APPL INTELL 2022. [DOI: 10.1007/s10489-021-03138-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
27
Demir A, Koike-Akino T, Wang Y, Haruna M, Erdogmus D. EEG-GNN: Graph Neural Networks for Classification of Electroencephalogram (EEG) Signals. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021;2021:1061-1067. [PMID: 34891471 DOI: 10.1109/embc46164.2021.9630194] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
28
Choi KS, Kim S, Kim BH, Jeon HJ, Kim JH, Jang JH, Jeong B. Deep graph neural network-based prediction of acute suicidal ideation in young adults. Sci Rep 2021;11:15828. [PMID: 34349156 PMCID: PMC8338980 DOI: 10.1038/s41598-021-95102-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Accepted: 07/06/2021] [Indexed: 02/07/2023]  Open
29
Wu D, Li X, Feng J. Connectome-based individual prediction of cognitive behaviors via graph propagation network reveals directed brain network topology. J Neural Eng 2021;18. [PMID: 34181582 DOI: 10.1088/1741-2552/ac0f4d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 06/28/2021] [Indexed: 11/11/2022]
30
Wein S, Malloni WM, Tomé AM, Frank SM, Henze GI, Wüst S, Greenlee MW, Lang EW. A graph neural network framework for causal inference in brain networks. Sci Rep 2021;11:8061. [PMID: 33850173 PMCID: PMC8044149 DOI: 10.1038/s41598-021-87411-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 03/26/2021] [Indexed: 02/02/2023]  Open
31
Wang PY, Sapra S, George VK, Silva GA. Generalizable Machine Learning in Neuroscience Using Graph Neural Networks. Front Artif Intell 2021;4:618372. [PMID: 33748747 PMCID: PMC7971515 DOI: 10.3389/frai.2021.618372] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 01/12/2021] [Indexed: 11/17/2022]  Open
32
Wu D, Li X, Feng J. Multi-Hops Functional Connectivity Improves Individual Prediction of Fusiform Face Activation via a Graph Neural Network. Front Neurosci 2021;14:596109. [PMID: 33519356 PMCID: PMC7840579 DOI: 10.3389/fnins.2020.596109] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Accepted: 12/09/2020] [Indexed: 12/01/2022]  Open
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