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Stanton C, Rodríguez-Celma J, Krämer U, Sanders D, Balk J. BRUTUS-LIKE (BTSL) E3 ligase-mediated fine-tuning of Fe regulation negatively affects Zn tolerance of Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:5767-5782. [PMID: 37393944 PMCID: PMC10540732 DOI: 10.1093/jxb/erad243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Accepted: 07/01/2023] [Indexed: 07/04/2023]
Abstract
The mineral micronutrients zinc (Zn) and iron (Fe) are essential for plant growth and human nutrition, but interactions between the homeostatic networks of these two elements are not fully understood. Here we show that loss of function of BTSL1 and BTSL2, which encode partially redundant E3 ubiquitin ligases that negatively regulate Fe uptake, confers tolerance to Zn excess in Arabidopsis thaliana. Double btsl1 btsl2 mutant seedlings grown on high Zn medium accumulated similar amounts of Zn in roots and shoots to the wild type, but suppressed the accumulation of excess Fe in roots. RNA-sequencing analysis showed that roots of mutant seedlings had relatively higher expression of genes involved in Fe uptake (IRT1, FRO2, and NAS) and in Zn storage (MTP3 and ZIF1). Surprisingly, mutant shoots did not show the transcriptional Fe deficiency response which is normally induced by Zn excess. Split-root experiments suggested that within roots the BTSL proteins act locally and downstream of systemic Fe deficiency signals. Together, our data show that constitutive low-level induction of the Fe deficiency response protects btsl1 btsl2 mutants from Zn toxicity. We propose that BTSL protein function is disadvantageous in situations of external Zn and Fe imbalances, and formulate a general model for Zn-Fe interactions in plants.
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Affiliation(s)
- Camilla Stanton
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich NR4 7UH, UK
| | | | - Ute Krämer
- Faculty of Biology and Biotechnology, Ruhr University Bochum, D-44801 Bochum, Germany
| | - Dale Sanders
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich NR4 7UH, UK
| | - Janneke Balk
- Department of Biochemistry and Metabolism, John Innes Centre, Norwich NR4 7UH, UK
- School of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, UK
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Anguita-Maeso M, Navas-Cortés JA, Landa BB. Insights into the Methodological, Biotic and Abiotic Factors Influencing the Characterization of Xylem-Inhabiting Microbial Communities of Olive Trees. PLANTS (BASEL, SWITZERLAND) 2023; 12:912. [PMID: 36840260 PMCID: PMC9967459 DOI: 10.3390/plants12040912] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 02/08/2023] [Accepted: 02/15/2023] [Indexed: 06/18/2023]
Abstract
Vascular pathogens are the causal agents of some of the most devastating plant diseases in the world, which can cause, under specific conditions, the destruction of entire crops. These plant pathogens activate a range of physiological and immune reactions in the host plant following infection, which may trigger the proliferation of a specific microbiome to combat them by, among others, inhibiting their growth and/or competing for space. Nowadays, it has been demonstrated that the plant microbiome can be modified by transplanting specific members of the microbiome, with exciting results for the control of plant diseases. However, its practical application in agriculture for the control of vascular plant pathogens is hampered by the limited knowledge of the plant endosphere, and, in particular, of the xylem niche. In this review, we present a comprehensive overview of how research on the plant microbiome has evolved during the last decades to unravel the factors and complex interactions that affect the associated microbial communities and their surrounding environment, focusing on the microbial communities inhabiting the xylem vessels of olive trees (Olea europaea subsp. europaea), the most ancient and important woody crop in the Mediterranean Basin. For that purpose, we have highlighted the role of xylem composition and its associated microorganisms in plants by describing the methodological approaches explored to study xylem microbiota, starting from the methods used to extract xylem microbial communities to their assessment by culture-dependent and next-generation sequencing approaches. Additionally, we have categorized some of the key biotic and abiotic factors, such as the host plant niche and genotype, the environment and the infection with vascular pathogens, that can be potential determinants to critically affect olive physiology and health status in a holobiont context (host and its associated organisms). Finally, we have outlined future directions and challenges for xylem microbiome studies based on the recent advances in molecular biology, focusing on metagenomics and culturomics, and bioinformatics network analysis. A better understanding of the xylem olive microbiome will contribute to facilitate the exploration and selection of specific keystone microorganisms that can live in close association with olives under a range of environmental/agronomic conditions. These microorganisms could be ideal targets for the design of microbial consortia that can be applied by endotherapy treatments to prevent or control diseases caused by vascular pathogens or modify the physiology and growth of olive trees.
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Chardon F, De Marco F, Marmagne A, Le Hir R, Vilaine F, Bellini C, Dinant S. Natural variation in the long-distance transport of nutrients and photoassimilates in response to N availability. JOURNAL OF PLANT PHYSIOLOGY 2022; 273:153707. [PMID: 35550522 DOI: 10.1016/j.jplph.2022.153707] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 03/31/2022] [Accepted: 04/19/2022] [Indexed: 06/15/2023]
Abstract
Phloem and xylem tissues are necessary for the allocation of nutrients and photoassimilates. However, how the long-distance transport of carbon (C) and nitrogen (N) is coordinated with the central metabolism is largely unknown. To better understand how the genetic and environmental factors influence C and N transport, we analysed the metabolite profiles of phloem exudates and xylem saps of five Arabidopsis thaliana accessions grown in low or non-limiting N supply. We observed that xylem saps were composed of 46 or 56% carbohydrates, 27 or 45% amino acids, and 5 or 13% organic acids in low or non-limiting N supply, respectively. In contrast, phloem exudates were composed of 76 or 86% carbohydrates, 7 or 18% amino acids, and 5 or 6% organic acids. Variation in N supply impacted amino acid, organic acid and sugar contents. When comparing low N and non-limiting N, the most striking differences were variations of glutamine, aspartate, and succinate abundance in the xylem saps and citrate and fumarate abundance in phloem exudates. In addition, we observed a substantial variation of metabolite content between genotypes, particularly under high N. The content of several organic acids, such as malate, citrate, fumarate, and succinate was affected by the genotype alone or by the interaction between genotype and N supply. This study confirmed that the response of the transport of nutrients in the phloem and the xylem to N availability is associated with the regulation of the central metabolism and could be an adaptive trait.
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Affiliation(s)
- Fabien Chardon
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Federica De Marco
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Anne Marmagne
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Rozenn Le Hir
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Françoise Vilaine
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Catherine Bellini
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France; Umeå Plant Science Centre (UPSC), Department of Plant Physiology, Umeå University, 901 87, Umeå, Sweden
| | - Sylvie Dinant
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France.
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Ono Y, Fukasawa M, Sueyoshi K, Ohtake N, Sato T, Tanabata S, Toyota R, Higuchi K, Saito A, Ohyama T. Application of Nitrate, Ammonium, or Urea Changes the Concentrations of Ureides, Urea, Amino Acids and Other Metabolites in Xylem Sap and in the Organs of Soybean Plants ( Glycine max (L.) Merr.). Int J Mol Sci 2021; 22:4573. [PMID: 33925462 PMCID: PMC8123890 DOI: 10.3390/ijms22094573] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Revised: 04/16/2021] [Accepted: 04/22/2021] [Indexed: 11/20/2022] Open
Abstract
Soybean (Glycine max (L.) Merr.) plants form root nodules and fix atmospheric dinitrogen, while also utilizing the combined nitrogen absorbed from roots. In this study, nodulated soybean plants were supplied with 5 mM N nitrate, ammonium, or urea for 3 days, and the changes in metabolite concentrations in the xylem sap and each organ were analyzed. The ureide concentration in the xylem sap was the highest in the control plants that were supplied with an N-free nutrient solution, but nitrate and asparagine were the principal compounds in the xylem sap with nitrate treatment. The metabolite concentrations in both the xylem sap and each organ were similar between the ammonium and urea treatments. Considerable amounts of urea were present in the xylem sap and all the organs among all the treatments. Positive correlations were observed between the ureides and urea concentrations in the xylem sap as well as in the roots and leaves, although no correlations were observed between the urea and arginine concentrations, suggesting that urea may have originated from ureide degradation in soybean plants, possibly in the roots. This is the first finding of the possibility of ureide degradation to urea in the underground organs of soybean plants.
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Affiliation(s)
- Yuki Ono
- Graduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan; (Y.O.); (M.F.); (K.S.); (N.O.)
| | - Masashige Fukasawa
- Graduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan; (Y.O.); (M.F.); (K.S.); (N.O.)
| | - Kuni Sueyoshi
- Graduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan; (Y.O.); (M.F.); (K.S.); (N.O.)
| | - Norikuni Ohtake
- Graduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan; (Y.O.); (M.F.); (K.S.); (N.O.)
| | - Takashi Sato
- Faculty of Bioresource Sciences, Akita Prefectural University, Akita 010-0195, Japan;
| | - Sayuri Tanabata
- College of Agriculture, Ibaraki University, Mito 310-0393, Japan;
| | - Ryo Toyota
- Faculty of Applied Biosciences, Tokyo University of Agriculture, Tokyo 156-8502, Japan; (R.T.); (K.H.); (A.S.)
| | - Kyoko Higuchi
- Faculty of Applied Biosciences, Tokyo University of Agriculture, Tokyo 156-8502, Japan; (R.T.); (K.H.); (A.S.)
| | - Akihiro Saito
- Faculty of Applied Biosciences, Tokyo University of Agriculture, Tokyo 156-8502, Japan; (R.T.); (K.H.); (A.S.)
| | - Takuji Ohyama
- Graduate School of Science and Technology, Niigata University, Niigata 950-2181, Japan; (Y.O.); (M.F.); (K.S.); (N.O.)
- Faculty of Applied Biosciences, Tokyo University of Agriculture, Tokyo 156-8502, Japan; (R.T.); (K.H.); (A.S.)
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Castro-Moretti FR, Cocuron JC, Cia MC, Cataldi TR, Labate CA, Alonso AP, Camargo LEA. Targeted Metabolic Profiles of the Leaves and Xylem Sap of Two Sugarcane Genotypes Infected with the Vascular Bacterial Pathogen Leifsonia xyli subsp. xyli. Metabolites 2021; 11:metabo11040234. [PMID: 33921244 PMCID: PMC8069384 DOI: 10.3390/metabo11040234] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Revised: 04/08/2021] [Accepted: 04/09/2021] [Indexed: 02/02/2023] Open
Abstract
Ratoon stunt (RS) is a worldwide disease that reduces biomass up to 80% and is caused by the xylem-dwelling bacterium Leifsonia xyli subsp. xyli. This study identified discriminant metabolites between a resistant (R) and a susceptible (S) sugarcane variety at the early stages of pathogen colonization (30 and 120 days after inoculation—DAI) by untargeted and targeted metabolomics of leaves and xylem sap using gas chromatography-mass spectrometry (GC-MS) and liquid chromatography-tandem mass spectrometry (LC-MS/MS), respectively. Bacterial titers were quantified in sugarcane extracts at 180 DAI through real-time polymerase chain reaction. Bacterial titers were at least four times higher on the S variety than in the R one. Global profiling detected 514 features in the leaves and 68 in the sap, while 119 metabolites were quantified in the leaves and 28 in the sap by targeted metabolomics. Comparisons between mock-inoculated treatments indicated a greater abundance of amino acids in the leaves of the S variety and of phenolics, flavonoids, and salicylic acid in the R one. In the xylem sap, fewer differences were detected among phenolics and flavonoids, but also included higher abundances of the signaling molecule sorbitol and glycerol in R. Metabolic changes in the leaves following pathogen inoculation were detected earlier in R than in S and were mostly related to amino acids in R and to phosphorylated compounds in S. Differentially represented metabolites in the xylem sap included abscisic acid. The data represent a valuable resource of potential biomarkers for metabolite-assisted selection of resistant varieties to RS.
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Affiliation(s)
- Fernanda R. Castro-Moretti
- Department of Biological Sciences, University of North Texas, 1504 W Mulberry St., Denton, TX 76201, USA; (F.R.C.-M.); (J.-C.C.); (A.P.A.)
- BioDiscovery Institute, University of North Texas, 1504 W Mulberry St., Denton, TX 76201, USA
| | - Jean-Christophe Cocuron
- Department of Biological Sciences, University of North Texas, 1504 W Mulberry St., Denton, TX 76201, USA; (F.R.C.-M.); (J.-C.C.); (A.P.A.)
| | - Mariana C. Cia
- Centro de Tecnologia Canavieira, Fazenda Santo Antonio, Piracicaba 13418-970, Brazil;
| | - Thais R. Cataldi
- Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, Avenue Pádua Dias 11, Piracicaba 13418-900, Brazil; (T.R.C.); (C.A.L.)
| | - Carlos A. Labate
- Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, Avenue Pádua Dias 11, Piracicaba 13418-900, Brazil; (T.R.C.); (C.A.L.)
| | - Ana Paula Alonso
- Department of Biological Sciences, University of North Texas, 1504 W Mulberry St., Denton, TX 76201, USA; (F.R.C.-M.); (J.-C.C.); (A.P.A.)
- BioDiscovery Institute, University of North Texas, 1504 W Mulberry St., Denton, TX 76201, USA
| | - Luis E. A. Camargo
- Department of Plant Pathology and Nematology, Luiz de Queiroz College of Agriculture, University of São Paulo, Avenue Pádua Dias 11, Piracicaba 13418-900, Brazil
- Correspondence: ; Tel.: +55-(19)-3429-4124
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Longchar B, Phukan T, Yadav S, Senthil‐Kumar M. An efficient low-cost xylem sap isolation method for bacterial wilt assays in tomato. APPLICATIONS IN PLANT SCIENCES 2020; 8:e11335. [PMID: 32351796 PMCID: PMC7186903 DOI: 10.1002/aps3.11335] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 02/12/2020] [Indexed: 06/01/2023]
Abstract
PREMISE A portable, simple, yet efficient method was developed for the rapid extraction of xylem sap from the stems and petioles of tomato plants for diagnostic and quantification assays of the xylem-colonizing wilt bacterium Ralstonia solanacearum. METHODS AND RESULTS Xylem saps were extracted from tomato stem sections using negative pressure generated from handheld needleless syringes. The samples were collected from plants grown under different soil moisture levels at four days after inoculation with the pathogen. Pipette tips were modified to serve as adapters for the stem sections. The quantification of the bacterial load in the extracted sap was performed by plating sap dilutions in Kelman's triphenyltetrazolium chloride (TTC) medium. Pathogen identity was further confirmed by performing a PCR using R. solanacearum-specific primers. CONCLUSIONS Due to its simplicity, portability, and thoroughness of extraction from predetermined tissue sizes, the method can potentially facilitate high-throughput onsite sampling from a large number of samples in a short time, which cannot be achieved with other available techniques.
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Affiliation(s)
| | - Tarinee Phukan
- National Institute of Plant Genome Research, Aruna Asaf Ali MargNew Delhi110067India
| | - Sarita Yadav
- National Institute of Plant Genome Research, Aruna Asaf Ali MargNew Delhi110067India
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7
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Marmiroli M, Mussi F, Pagano L, Imperiale D, Lencioni G, Villani M, Zappettini A, White JC, Marmiroli N. Cadmium sulfide quantum dots impact Arabidopsis thaliana physiology and morphology. CHEMOSPHERE 2020; 240:124856. [PMID: 31568945 DOI: 10.1016/j.chemosphere.2019.124856] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2019] [Revised: 09/10/2019] [Accepted: 09/13/2019] [Indexed: 06/10/2023]
Abstract
The differential mechanisms of CdS QDs (Quantum Dots) and Cd ion toxicity to Arabidopsis thaliana (L.) Heynh were investigated. Plants were exposed to 40 and 60 mg L-1 for CdS QDs and 76.9 and 115.2 mg L-1 CdSO4·7H2O and toxicity was evaluated at 5, 20, 35 (T5, T20, T35) days after exposure. Oxidative stress upon exposure was evaluated by biochemical essays targeting non-enzymatic oxidative stress physiological parameters, including respiration efficiency, total chlorophylls, carotenoids, ABTS and DPPH radicals reduction, total phenolics, GSH redox state, lipid peroxidation. Total Cd in plants was measured with AAS. Root and leaf morphology and element content were assessed in vivo utilizing low-vacuum Environmental Scanning Electron Microscopy (ESEM) with X-ray microanalysis (EDX). This integrated approach allowed identification of unique nanoscale CdS QDs toxicity to the plants that was distinct from CdSO4 exposure. The analyses highlighted that CdS QDs and Cd ions effects are modulated by the developmental stage of the plant, starting from T20 till T35 the plant development was modulated by the treatments, in particular CdS QDs induced early flowering. Both treatments induced Fe accumulation in roots, but at different intensities, while CdS QDs was associated with Mn increase into plant leaf. CdSO4 elicited higher levels of oxidative stress compared with QDs, especially the former treatment caused more intense respiration damages and reduction in chlorophyll and carotenoids than the latter. The two types of treatments impact differently on root and leaf morphology.
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Affiliation(s)
- Marta Marmiroli
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy.
| | - Francesca Mussi
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
| | - Luca Pagano
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
| | - Davide Imperiale
- Consorzio Interuniversitario Nazionale per le Scienze Ambientali (CINSA), University of Parma, Parma, Italy
| | - Giacomo Lencioni
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parma, Italy
| | | | | | - Jason C White
- The Connecticut Agricultural Experiment Station, New Haven, CT, USA
| | - Nelson Marmiroli
- Consorzio Interuniversitario Nazionale per le Scienze Ambientali (CINSA), University of Parma, Parma, Italy
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8
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Chu Q, Sha Z, Maruyama H, Yang L, Pan G, Xue L, Watanabe T. Metabolic reprogramming in nodules, roots, and leaves of symbiotic soybean in response to iron deficiency. PLANT, CELL & ENVIRONMENT 2019; 42:3027-3043. [PMID: 31283836 DOI: 10.1111/pce.13608] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Revised: 06/27/2019] [Accepted: 07/01/2019] [Indexed: 05/28/2023]
Abstract
To elucidate the mechanism of adaptation of leguminous plants to iron (Fe)-deficient environment, comprehensive analyses of soybean (Glycine max) plants (sampled at anthesis) were conducted under Fe-sufficient control and Fe-deficient treatment using metabolomic and physiological approach. Our results show that soybeans grown under Fe-deficient conditions showed lower nitrogen (N) fixation efficiency; however, ureides increased in different tissues, indicating potential N-feedback inhibition. N assimilation was inhibited as observed in the repressed amino acids biosynthesis and reduced proteins in roots and nodules. In Fe-deficient leaves, many amino acids increased, accompanied by the reduction of malate, fumarate, succinate, and α-ketoglutarate, which implies the N reprogramming was stimulated by the anaplerotic pathway. Accordingly, many organic acids increased in roots and nodules; however, enzymes involved in the related metabolic pathway (e.g., Krebs cycle) showed opposite activity between roots and nodules, indicative of different mechanisms. Sugars increased or maintained at constant level in different tissues under Fe deficiency, which probably relates to oxidative stress, cell wall damage, and feedback regulation. Increased ascorbate, nicotinate, raffinose, galactinol, and proline in different tissues possibly helped resist the oxidative stress induced by Fe deficiency. Overall, Fe deficiency induced the coordinated metabolic reprogramming in different tissues of symbiotic soybean plants.
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Affiliation(s)
- Qingnan Chu
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, Ministry of Agriculture, Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
- Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan
- Centre of Integrated Water-Energy-Food Studies, School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst Campus, Nottinghamshire, NG25 0QF, UK
| | - Zhimin Sha
- Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan
- Graduate School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Hayato Maruyama
- Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan
| | - Linzhang Yang
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, Ministry of Agriculture, Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Gang Pan
- Centre of Integrated Water-Energy-Food Studies, School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst Campus, Nottinghamshire, NG25 0QF, UK
| | - Lihong Xue
- Key Laboratory of Agro-Environment in Downstream of Yangtze Plain, Ministry of Agriculture, Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Toshihiro Watanabe
- Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan
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Abstract
Current understanding of many animal-microbial symbioses involving unculturable bacterial symbionts with much-reduced genomes derives almost entirely from nonquantitative inferences from genome data. To overcome this limitation, we reconstructed multipartner metabolic models that quantify both the metabolic fluxes within and between three xylem-feeding insects and their bacterial symbionts. This revealed near-complete metabolic segregation between cooccurring bacterial symbionts, despite extensive metabolite exchange between each symbiont and the host, suggestive of strict host controls over the metabolism of its symbionts. We extended the model analysis to investigate metabolic costs. The positive relationship between symbiont genome size and the metabolic cost incurred by the host points to fitness benefits to the host of bearing symbionts with small genomes. The multicompartment metabolic models developed here can be applied to other symbioses that are not readily tractable to experimental approaches. Various intracellular bacterial symbionts that provide their host with essential nutrients have much-reduced genomes, attributed largely to genomic decay and relaxed selection. To obtain quantitative estimates of the metabolic function of these bacteria, we reconstructed genome- and transcriptome-informed metabolic models of three xylem-feeding insects that bear two bacterial symbionts with complementary metabolic functions: a primary symbiont, Sulcia, that has codiversified with the insects, and a coprimary symbiont of distinct taxonomic origin and with different degrees of genome reduction in each insect species (Hodgkinia in a cicada, Baumannia in a sharpshooter, and Sodalis in a spittlebug). Our simulations reveal extensive bidirectional flux of multiple metabolites between each symbiont and the host, but near-complete metabolic segregation (i.e., near absence of metabolic cross-feeding) between the two symbionts, a likely mode of host control over symbiont metabolism. Genome reduction of the symbionts is associated with an increased number of host metabolic inputs to the symbiont and also reduced metabolic cost to the host. In particular, Sulcia and Hodgkinia with genomes of ≤0.3 Mb are calculated to recycle ∼30 to 80% of host-derived nitrogen to essential amino acids returned to the host, while Baumannia and Sodalis with genomes of ≥0.6 Mb recycle 10 to 15% of host nitrogen. We hypothesize that genome reduction of symbionts may be driven by selection for increased host control and reduced host costs, as well as by the stochastic process of genomic decay and relaxed selection.
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10
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Lei R, Du Z, Kong J, Li G, He Y, Qiu Y, Yan J, Zhu S. Blue Native/SDS-PAGE and iTRAQ-Based Chloroplasts Proteomics Analysis of Nicotiana tabacum Leaves Infected with M Strain of Cucumber Mosaic Virus Reveals Several Proteins Involved in Chlorosis Symptoms. Proteomics 2018; 18. [PMID: 29193783 DOI: 10.1002/pmic.201700359] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Revised: 11/16/2017] [Indexed: 01/05/2023]
Abstract
Virus infection in plants involves necrosis, chlorosis, and mosaic. The M strain of cucumber mosaic virus (M-CMV) has six distinct symptoms: vein clearing, mosaic, chlorosis, partial green recovery, complete green recovery, and secondary mosaic. Chlorosis indicates the loss of chlorophyll which is highly abundant in plant leaves and plays essential roles in photosynthesis. Blue native/SDS-PAGE combined with mass spectrum was performed to detect the location of virus, and proteomic analysis of chloroplast isolated from virus-infected plants was performed to quantify the changes of individual proteins in order to gain a global view of the total chloroplast protein dynamics during the virus infection. Among the 438 proteins quantified, 33 showed a more than twofold change in abundance, of which 22 are involved in the light-dependent reactions and five in the Calvin cycle. The dynamic change of these proteins indicates that light-dependent reactions are down-accumulated, and the Calvin cycle was up-accumulated during virus infection. In addition to the proteins involved in photosynthesis, tubulin was up-accumulated in virus-infected plant, which might contribute to the autophagic process during plant infection. In conclusion, this extensive proteomic investigation on intact chloroplasts of virus-infected tobacco leaves provided some important novel information on chlorosis mechanisms induced by virus infection.
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Affiliation(s)
- Rong Lei
- Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, P. R. China
| | - Zhixin Du
- Guangxi Entry-Exit Inspection and Quarantine Bureau, Nanning, Guangxi, P. R. China
| | - Jun Kong
- Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, P. R. China
| | - Guifen Li
- Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, P. R. China
| | - Yan He
- Animal and Plant and Food Testing Center, Tianjin Entry Exit Inspection and Quarantine Bureau, Tianjin, P. R. China
| | - Yanhong Qiu
- Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, P. R. China
| | - Jin Yan
- Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, P. R. China
| | - Shuifang Zhu
- Institute of Plant Quarantine, Chinese Academy of Inspection and Quarantine, Beijing, P. R. China
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11
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Vigani G, Di Silvestre D, Agresta AM, Donnini S, Mauri P, Gehl C, Bittner F, Murgia I. Molybdenum and iron mutually impact their homeostasis in cucumber (Cucumis sativus) plants. THE NEW PHYTOLOGIST 2017; 213:1222-1241. [PMID: 27735062 DOI: 10.1111/nph.14214] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Accepted: 08/22/2016] [Indexed: 05/22/2023]
Abstract
Molybdenum (Mo) and iron (Fe) are essential micronutrients required for crucial enzyme activities in plant metabolism. Here we investigated the existence of a mutual control of Mo and Fe homeostasis in cucumber (Cucumis sativus). Plants were grown under single or combined Mo and Fe starvation. Physiological parameters were measured, the ionomes of tissues and the ionomes and proteomes of root mitochondria were profiled, and the activities of molybdo-enzymes and the synthesis of molybdenum cofactor (Moco) were evaluated. Fe and Mo were found to affect each other's total uptake and distribution within tissues and at the mitochondrial level, with Fe nutritional status dominating over Mo homeostasis and affecting Mo availability for molybdo-enzymes in the form of Moco. Fe starvation triggered Moco biosynthesis and affected the molybdo-enzymes, with its main impact on nitrate reductase and xanthine dehydrogenase, both being involved in nitrogen assimilation and mobilization, and on the mitochondrial amidoxime reducing component. These results, together with the identification of > 100 proteins differentially expressed in root mitochondria, highlight the central role of mitochondria in the coordination of Fe and Mo homeostasis and allow us to propose the first model of the molecular interactions connecting Mo and Fe homeostasis.
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Affiliation(s)
- Gianpiero Vigani
- Department of Agricultural and Environmental Sciences, University of Milano, via Celoria 2, 20133, Milano, Italy
| | - Dario Di Silvestre
- Proteomic and Metabolomic Laboratory, Institute of Biomedical Technologies, National Research Council (ITB-CNR), via F.lli Cervi 93, 20090, Segrate (MI), Italy
| | - Anna Maria Agresta
- Proteomic and Metabolomic Laboratory, Institute of Biomedical Technologies, National Research Council (ITB-CNR), via F.lli Cervi 93, 20090, Segrate (MI), Italy
| | - Silvia Donnini
- Department of Agricultural and Environmental Sciences, University of Milano, via Celoria 2, 20133, Milano, Italy
| | - Pierluigi Mauri
- Proteomic and Metabolomic Laboratory, Institute of Biomedical Technologies, National Research Council (ITB-CNR), via F.lli Cervi 93, 20090, Segrate (MI), Italy
| | - Christian Gehl
- Institute of Horticulture Production Systems, Leibniz University of Hannover, Herrenhaeuser Str. 2, 30419, Hannover, Germany
| | - Florian Bittner
- Department of Plant Biology, Braunschweig University of Technology, Spielmannstrasse 7, 38106, Braunschweig, Germany
| | - Irene Murgia
- Department of Biosciences, University of Milano, via Celoria 26, 20133, Milano, Italy
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Rahman MF, Ghosal A, Alam MF, Kabir AH. Remediation of cadmium toxicity in field peas (Pisum sativum L.) through exogenous silicon. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2017; 135:165-172. [PMID: 27736676 DOI: 10.1016/j.ecoenv.2016.09.019] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2016] [Revised: 08/14/2016] [Accepted: 09/21/2016] [Indexed: 05/02/2023]
Abstract
Cadmium (Cd) is an important phytotoxic element causing health hazards. This work investigates whether and how silicon (Si) influences the alleviation of Cd toxicity in field peas at biochemical and molecular level. The addition of Si in Cd-stressed plants noticeably increased growth and development as well as total protein and membrane stability of Cd-stressed plants, suggesting that Si does have critical roles in Cd detoxification in peas. Furthermore, Si supplementation in Cd-stressed plants showed simultaneous significant increase and decrease of Cd and Fe in roots and shoots, respectively, compared with Cd-stressed plants. At molecular level, GSH1 (phytochelatin precursor) and MTA (metallothionein) transcripts predominantly expressed in roots and strongly induced due to Si supplementation in Cd-stressed plants compared with Cd-free conditions, suggesting that these chelating agents may bind to Cd leading to vacuolar sequestration in roots. Furthermore, pea Fe transporter (RIT1) showed downregulation in shoots when plants were treated with Si along with Cd compared with Cd-treated conditions. It is consistent with the physiological observations and supports the conclusion that alleviation of Cd toxicity in pea plants might be associated with Cd sequestration in roots and reduced Cd translocation in shoots through the regulation of Fe transport. Furthermore, increased CAT, POD, SOD and GR activity along with elevated S-metabolites (cysteine, methionine, glutathione) implies the active involvement of ROS scavenging and plays, at least in part, to the Si-mediated alleviation of Cd toxicity in pea. The study provides first mechanistic evidence on the beneficial effect of Si on Cd toxicity in pea plants.
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Affiliation(s)
| | - Anubrata Ghosal
- Department of Biology, Massachusetts Institute of Technology (MIT), MA 02139, United States
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13
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Lihavainen J, Ahonen V, Keski-Saari S, Kontunen-Soppela S, Oksanen E, Keinänen M. Low vapour pressure deficit affects nitrogen nutrition and foliar metabolites in silver birch. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:4353-65. [PMID: 27259554 PMCID: PMC5301935 DOI: 10.1093/jxb/erw218] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Air humidity indicated as vapour pressure deficit (VPD) is directly related to transpiration and stomatal function of plants. We studied the effects of VPD and nitrogen (N) supply on leaf metabolites, plant growth, and mineral nutrition with young micropropagated silver birches (Betula pendula Roth.) in a growth chamber experiment. Plants that were grown under low VPD for 26 d had higher biomass, larger stem diameter, more leaves, fewer fallen leaves, and larger total leaf area than plants that were grown under high VPD. Initially, low VPD increased height growth rate and stomatal conductance; however, the effect was transient and the differences between low and high VPD plants became smaller with time. Metabolic adjustment to low VPD reflected N deficiency. The concentrations of N, iron, chlorophyll, amino acids, and soluble carbohydrates were lower and the levels of starch, quercetin glycosides, and raffinose were higher in the leaves that had developed under low VPD compared with high VPD. Additional N supply did not fully overcome the negative effect of low VPD on nutrient status but it diminished the effects of low VPD on leaf metabolism. Thus, with high N supply, the glutamine to glutamate ratio and starch production under low VPD became comparable with the levels under high VPD. The present study demonstrates that low VPD affects carbon and nutrient homeostasis and modifies N allocation of plants.
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Affiliation(s)
- Jenna Lihavainen
- University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 111, 80101 Joensuu, Finland
| | - Viivi Ahonen
- University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 1627, 70211 Kuopio, Finland
| | - Sarita Keski-Saari
- University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 111, 80101 Joensuu, Finland
| | - Sari Kontunen-Soppela
- University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 111, 80101 Joensuu, Finland
| | - Elina Oksanen
- University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 111, 80101 Joensuu, Finland
| | - Markku Keinänen
- University of Eastern Finland, Department of Environmental and Biological Sciences, PO Box 111, 80101 Joensuu, Finland
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14
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Rodríguez-Celma J, Lattanzio G, Villarroya D, Gutierrez-Carbonell E, Ceballos-Laita L, Rencoret J, Gutiérrez A, Del Río JC, Grusak MA, Abadía A, Abadía J, López-Millán AF. Effects of Fe deficiency on the protein profiles and lignin composition of stem tissues from Medicago truncatula in absence or presence of calcium carbonate. J Proteomics 2016; 140:1-12. [PMID: 27045941 DOI: 10.1016/j.jprot.2016.03.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Revised: 03/07/2016] [Accepted: 03/10/2016] [Indexed: 12/26/2022]
Abstract
UNLABELLED Iron deficiency is a yield-limiting factor with major implications for crop production, especially in soils with high CaCO3. Because stems are essential for the delivery of nutrients to the shoots, the aim of this work was to study the effects of Fe deficiency on the stem proteome of Medicago truncatula. Two-dimensional electrophoresis separation of stem protein extracts resolved 276 consistent spots in the whole experiment. Iron deficiency in absence or presence of CaCO3 caused significant changes in relative abundance in 10 and 31 spots, respectively, and 80% of them were identified by mass spectrometry. Overall results indicate that Fe deficiency by itself has a mild effect on the stem proteome, whereas Fe deficiency in the presence of CaCO3 has a stronger impact and causes changes in a larger number of proteins, including increases in stress and protein metabolism related proteins not observed in the absence of CaCO3. Both treatments resulted in increases in cell wall related proteins, which were more intense in the presence of CaCO3. The increases induced by Fe-deficiency in the lignin per protein ratio and changes in the lignin monomer composition, assessed by pyrolysis-gas chromatography-mass spectrometry and microscopy, respectively, further support the existence of cell wall alterations. BIOLOGICAL SIGNIFICANCE In spite of being essential for the delivery of nutrients to the shoots, our knowledge of stem responses to nutrient deficiencies is very limited. The present work applies 2-DE techniques to unravel the response of this understudied tissue to Fe deficiency. Proteomics data, complemented with mineral, lignin and microscopy analyses, indicate that stems respond to Fe deficiency by increasing stress and defense related proteins, probably in response of mineral and osmotic unbalances, and eliciting significant changes in cell wall composition. The changes observed are likely to ultimately affect solute transport and distribution to the leaves.
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Affiliation(s)
- Jorge Rodríguez-Celma
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC), P.O. Box 13034, E-50080, Zaragoza, Spain
| | - Giuseppe Lattanzio
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC), P.O. Box 13034, E-50080, Zaragoza, Spain
| | - Dido Villarroya
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC), P.O. Box 13034, E-50080, Zaragoza, Spain
| | - Elain Gutierrez-Carbonell
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC), P.O. Box 13034, E-50080, Zaragoza, Spain
| | - Laura Ceballos-Laita
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC), P.O. Box 13034, E-50080, Zaragoza, Spain
| | - Jorge Rencoret
- Instituto de Recursos Naturales y Agrobiología de Sevilla (CSIC), Reina Mercedes 10, E-41012 Sevilla, Spain
| | - Ana Gutiérrez
- Instituto de Recursos Naturales y Agrobiología de Sevilla (CSIC), Reina Mercedes 10, E-41012 Sevilla, Spain
| | - José C Del Río
- Instituto de Recursos Naturales y Agrobiología de Sevilla (CSIC), Reina Mercedes 10, E-41012 Sevilla, Spain
| | - Michael A Grusak
- USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates Street, Houston, TX 77030, USA
| | - Anunciación Abadía
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC), P.O. Box 13034, E-50080, Zaragoza, Spain
| | - Javier Abadía
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC), P.O. Box 13034, E-50080, Zaragoza, Spain
| | - Ana-Flor López-Millán
- USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates Street, Houston, TX 77030, USA.
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15
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Zamboni A, Zanin L, Tomasi N, Avesani L, Pinton R, Varanini Z, Cesco S. Early transcriptomic response to Fe supply in Fe-deficient tomato plants is strongly influenced by the nature of the chelating agent. BMC Genomics 2016; 17:35. [PMID: 26742479 PMCID: PMC4705743 DOI: 10.1186/s12864-015-2331-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2015] [Accepted: 12/17/2015] [Indexed: 01/23/2023] Open
Abstract
BACKGROUND It is well known that in the rhizosphere soluble Fe sources available for plants are mainly represented by a mixture of complexes between the micronutrient and organic ligands such as carboxylates and phytosiderophores (PS) released by roots, as well as fractions of humified organic matter. The use by roots of these three natural Fe sources (Fe-citrate, Fe-PS and Fe complexed to water-extractable humic substances, Fe-WEHS) have been already studied at physiological level but the knowledge about the transcriptomic aspects is still lacking. RESULTS The (59)Fe concentration recorded after 24 h in tissues of tomato Fe-deficient plants supplied with (59)Fe complexed to WEHS reached values about 2 times higher than those measured in response to the supply with Fe-citrate and Fe-PS. However, after 1 h no differences among the three Fe-chelates were observed considering the (59)Fe concentration and the root Fe(III) reduction activity. A large-scale transcriptional analysis of root tissue after 1 h of Fe supply showed that Fe-WEHS modulated only two transcripts leaving the transcriptome substantially identical to Fe-deficient plants. On the other hand, Fe-citrate and Fe-PS affected 728 and 408 transcripts, respectively, having 289 a similar transcriptional behaviour in response to both Fe sources. CONCLUSIONS The root transcriptional response to the Fe supply depends on the nature of chelating agents (WEHS, citrate and PS). The supply of Fe-citrate and Fe-PS showed not only a fast back regulation of molecular mechanisms modulated by Fe deficiency but also specific responses due to the uptake of the chelating molecule. Plants fed with Fe-WEHS did not show relevant changes in the root transcriptome with respect to the Fe-deficient plants, indicating that roots did not sense the restored cellular Fe accumulation.
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Affiliation(s)
- Anita Zamboni
- Department of Biotechnology, University of Verona, via delle Grazie 15, 37134, Verona, Italy.
| | - Laura Zanin
- Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100, Udine, Italy.
| | - Nicola Tomasi
- Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100, Udine, Italy.
| | - Linda Avesani
- Department of Biotechnology, University of Verona, via delle Grazie 15, 37134, Verona, Italy.
| | - Roberto Pinton
- Department of Agriculture and Environmental Sciences, University of Udine, via delle Scienze 208, 33100, Udine, Italy.
| | - Zeno Varanini
- Department of Biotechnology, University of Verona, via delle Grazie 15, 37134, Verona, Italy.
| | - Stefano Cesco
- Faculty of Science and Technology, Free University of Bolzano, piazza Università 5, 39100, Bolzano, Italy.
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Zuchi S, Watanabe M, Hubberten HM, Bromke M, Osorio S, Fernie AR, Celletti S, Paolacci AR, Catarcione G, Ciaffi M, Hoefgen R, Astolfi S. The Interplay between Sulfur and Iron Nutrition in Tomato. PLANT PHYSIOLOGY 2015; 169:2624-39. [PMID: 26438787 PMCID: PMC4677893 DOI: 10.1104/pp.15.00995] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2015] [Accepted: 10/02/2015] [Indexed: 05/20/2023]
Abstract
Plant response mechanisms to deficiency of a single nutrient, such as sulfur (S) or iron (Fe), have been described at agronomic, physiological, biochemical, metabolomics, and transcriptomic levels. However, agroecosystems are often characterized by different scenarios, in which combined nutrient deficiencies are likely to occur. Soils are becoming depleted for S, whereas Fe, although highly abundant in the soil, is poorly available for uptake because of its insolubility in the soil matrix. To this end, earlier reports showed that a limited S availability reduces Fe uptake and that Fe deficiency results in the modulation of sulfate uptake and assimilation. However, the mechanistic basis of this interaction remains largely unknown. Metabolite profiling of tomato (Solanum lycopersicum) shoots and roots from plants exposed to Fe, S, and combined Fe and S deficiency was performed to improve the understanding of the S-Fe interaction through the identification of the main players in the considered pathways. Distinct changes were revealed under the different nutritional conditions. Furthermore, we investigated the development of the Fe deficiency response through the analysis of expression of ferric chelate reductase, iron-regulated transporter, and putative transcription factor genes and plant sulfate uptake and mobilization capacity by analyzing the expression of genes encoding sulfate transporters (STs) of groups 1, 2, and 4 (SlST1.1, SlST1.2, SlST2.1, SlST2.2, and SlST4.1). We identified a high degree of common and even synergistic response patterns as well as nutrient-specific responses. The results are discussed in the context of current models of nutrient deficiency responses in crop plants.
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Affiliation(s)
- Sabrina Zuchi
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Mutsumi Watanabe
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Hans-Michael Hubberten
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Mariusz Bromke
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Sonia Osorio
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Alisdair R Fernie
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Silvia Celletti
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Anna Rita Paolacci
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Giulio Catarcione
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Mario Ciaffi
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Rainer Hoefgen
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
| | - Stefania Astolfi
- Department of Agricultural and Forestry Sciences (S.Z., S.C., A.R.P., S.A.) and Department for Innovation in Biological, Agrofood, and Forest Systems (G.C., M.C.), University of Tuscia, 01100 Viterbo, Italy;Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14424 Potsdam, Germany (M.W., H.-M.H., M.B., A.R.F., R.H.); andDepartment of Molecular Biology and Biochemistry, Instituto de Hortofruticultura Subtropical y Mediterránea "La Mayora," University of Malaga, Consejo Superior de Investigaciones Científicas, 29071 Malaga, Spain (S.O.)
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17
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Li W, Lan P. Genome-wide analysis of overlapping genes regulated by iron deficiency and phosphate starvation reveals new interactions in Arabidopsis roots. BMC Res Notes 2015; 8:555. [PMID: 26459023 PMCID: PMC4604098 DOI: 10.1186/s13104-015-1524-y] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Accepted: 09/23/2015] [Indexed: 11/28/2022] Open
Abstract
Background Iron (Fe) and phosphorus (P) are essential mineral nutrients in plants. Knowledge regarding global changes in the abundance of Fe-responsive genes under Pi deficiency as well as the processes these genes are involved in remains largely unavailable at the genome level. In the current study, we comparatively analyzed RNA sequencing data sets relative to Fe deficiency (NCBI: SRP044814) and Pi starvation (NCBI: SRA050356.1). Results Analysis showed a total of 579 overlapping genes that are responsible for both Fe deficiency and Pi starvation in Arabidopsis roots. A subset of 137 genes had greater than twofold changes in transcript abundant as a result of the treatments. Gene ontology (GO) analysis showed that the stress-related processes ‘response to salt stress’, ‘response to oxidative stress’, and ‘response to zinc ion’ were enriched in the 579 genes, while Fe response-related processes, including ‘cellular response to nitric oxide’, ‘cellular response to iron ion’, and ‘cellular iron ion homeostasis’, were also enriched in the subset of 137 genes. Co-expression analysis of the 579 genes using the MACCU toolbox yielded a network consisting of 292 nodes (genes). Further analysis revealed that a subset of 90 genes were up-regulated under Fe shortage, but down-regulated under Pi starvation. GO analysis in this group of genes revealed an increased cellular response to iron ion/nitric oxide/ethylene stimuli. Promoter analysis was performed in 35 of the 90 genes with a 1.5-fold or greater change in abundance, showing that 12 genes contained the PHOSPHATE STARVATION RESPONSE1-binding GNATATNC cis-element within their promoter regions. Quantitative real-time PCR showed that the decreased abundance of Fe acquisition genes under Pi deficiency exclusively relied on Fe concentration in Pi-deficient media. Conclusions Comprehensive analysis of the overlapping genes derived from Fe deficiency and Pi starvation provides more information to understand the link between Pi and Fe homeostasis. Gene clustering and root-specific co-expression analysis revealed several potentially important genes which likely function as putative novel players in response to Fe and Pi deficiency or in cross-talk between Fe-deficient responses and Pi-deficient signaling. Electronic supplementary material The online version of this article (doi:10.1186/s13104-015-1524-y) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Wenfeng Li
- Collaborative Innovation Center of Sustainable Forestry in Southern China of Jiangsu Province, College of Biology and the Environment, Nanjing Forestry University, Nanjing, 210037, People's Republic of China. .,State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, People's Republic of China.
| | - Ping Lan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, People's Republic of China.
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18
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Arias-Baldrich C, Bosch N, Begines D, Feria AB, Monreal JA, García-Mauriño S. Proline synthesis in barley under iron deficiency and salinity. JOURNAL OF PLANT PHYSIOLOGY 2015; 183:121-9. [PMID: 26125122 DOI: 10.1016/j.jplph.2015.05.016] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2015] [Revised: 05/11/2015] [Accepted: 05/12/2015] [Indexed: 05/07/2023]
Abstract
This work investigates proline synthesis in six barley varieties subjected to iron deficiency, salinity or both stresses. The highest growth under Fe sufficiency corresponded to Belgrano and Shakira. A moderate augment of leaf phosphoenolpyruvate carboxylase (PEPC) activity was observed in all six varieties in response to Fe deficiency, consistently in leaves and sporadically in roots. All six varieties accumulated proline under Fe deficiency, to a higher extent in leaves than in roots. The decrease of Fe supply from 100 μM NaFe(III)-EDTA to 0.5 μM NaFe(III)-EDTA reduced growth and photosynthetic pigments similarly in the six barley varieties. On the contrary, differences between varieties could be observed with respect to increased or, conversely, decreased proline content as a function of the amount of NaFe(III)-EDTA supplied. These two opposite types were represented by Belgrano (higher proline under Fe deficiency) and Shakira (higher proline under Fe sufficiency). Time-course experiments suggested that leaf PEPC activity was not directly responsible for supplying C for proline synthesis under Fe deficiency. High proline levels in the leaves of Fe-deficient Belgrano plants in salinity were associated to a better performance of this variety under these combined stresses.
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Affiliation(s)
- Cirenia Arias-Baldrich
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes n6, 41012, Seville, Spain.
| | - Nadja Bosch
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes n6, 41012, Seville, Spain.
| | - Digna Begines
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes n6, 41012, Seville, Spain.
| | - Ana B Feria
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes n6, 41012, Seville, Spain.
| | - José A Monreal
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes n6, 41012, Seville, Spain.
| | - Sofía García-Mauriño
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, Avenida Reina Mercedes n6, 41012, Seville, Spain.
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Jones OAH, Dias DA, Callahan DL, Kouremenos KA, Beale DJ, Roessner U. The use of metabolomics in the study of metals in biological systems. Metallomics 2015; 7:29-38. [DOI: 10.1039/c4mt00123k] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Metabolomics and systems biology/toxicology can elucidate novel pathways and mechanistic networks of metals and metalloids in biological systems, as well as providing useful biomarkers of the metal status of organisms.
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Affiliation(s)
| | - Daniel A. Dias
- Metabolomics Australia
- School of Botany
- The University of Melbourne
- Parkville, Australia
| | - Damien L. Callahan
- Centre for Chemistry and Biotechnology
- School of Life and Environmental Sciences
- Deakin University
- Melbourne VIC 3125, Australia
| | - Konstantinos A. Kouremenos
- Metabolomics Australia
- Bio21 Molecular Science and Biotechnology Institute
- The University of Melbourne
- , Australia
| | - David J. Beale
- Commonwealth Scientific and Industrial Research Organisation (CSIRO)
- Land and Water
- Highett, Australia
| | - Ute Roessner
- Metabolomics Australia
- School of Botany
- The University of Melbourne
- Parkville, Australia
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20
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Marler TE, Lindström AJ. Free sugar profile in cycads. FRONTIERS IN PLANT SCIENCE 2014; 5:526. [PMID: 25339967 PMCID: PMC4188140 DOI: 10.3389/fpls.2014.00526] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Accepted: 09/17/2014] [Indexed: 05/08/2023]
Abstract
The sugars fructose, glucose, maltose, and sucrose were quantified in seven tissues of Zamia muricata Willd. to determine their distribution throughout various organs of a model cycad species, and in lateral structural roots of 18 cycad species to determine the variation in sugar concentration and composition among species representing every cycad genus. Taproot and lateral structural roots contained more sugars than leaf, stem, female strobilus, or coralloid roots. For example, taproot sugar concentration was 6.4-fold greater than stem sugar concentration. The dominant root sugars were glucose and fructose, and the only detected stem sugar was sucrose. Sucrose also dominated the sugar profile for leaflet and coralloid root tissue, and fructose was the dominant sugar in female strobilus tissue. Maltose was a minor constituent of taproot, leaflet, and female strobilus tissue, but absent in other tissues. The concentration of total free sugars and each of the four sugars did not differ among genera or families. Stoichiometric relationships among the sugars, such as the quotient hexoses/disaccharides, differed among organs and families. Although anecdotal reports on cycad starch have been abundant due to its historical use as human food and the voluminous medical research invested into cycad neurotoxins, this is the first report on the sugar component of the non-structural carbohydrate profile of cycads. Fructose, glucose, and sucrose are abundant in cycad tissues, with their relative abundance highly contrasting among organs. Their importance as forms of carbon storage, messengers of information, or regulators of cycad metabolism have not been determined to date.
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Affiliation(s)
- Thomas E. Marler
- Western Pacific Tropical Research Center, College of Natural and Applied Sciences, University of GuamMangilao, Guam
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21
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Álvarez-Fernández A, Díaz-Benito P, Abadía A, López-Millán AF, Abadía J. Metal species involved in long distance metal transport in plants. FRONTIERS IN PLANT SCIENCE 2014; 5:105. [PMID: 24723928 PMCID: PMC3971170 DOI: 10.3389/fpls.2014.00105] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2014] [Accepted: 03/04/2014] [Indexed: 05/19/2023]
Abstract
The mechanisms plants use to transport metals from roots to shoots are not completely understood. It has long been proposed that organic molecules participate in metal translocation within the plant. However, until recently the identity of the complexes involved in the long-distance transport of metals could only be inferred by using indirect methods, such as analyzing separately the concentrations of metals and putative ligands and then using in silico chemical speciation software to predict metal species. Molecular biology approaches also have provided a breadth of information about putative metal ligands and metal complexes occurring in plant fluids. The new advances in analytical techniques based on mass spectrometry and the increased use of synchrotron X-ray spectroscopy have allowed for the identification of some metal-ligand species in plant fluids such as the xylem and phloem saps. Also, some proteins present in plant fluids can bind metals and a few studies have explored this possibility. This study reviews the analytical challenges researchers have to face to understand long-distance metal transport in plants as well as the recent advances in the identification of the ligand and metal-ligand complexes in plant fluids.
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Affiliation(s)
| | | | | | | | - Javier Abadía
- Plant Nutrition Department, Aula Dei Experimental Station (CSIC)Zaragoza, Spain
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Samira R, Stallmann A, Massenburg LN, Long TA. Ironing out the issues: integrated approaches to understanding iron homeostasis in plants. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2013; 210:250-9. [PMID: 23849132 DOI: 10.1016/j.plantsci.2013.06.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Revised: 06/07/2013] [Accepted: 06/07/2013] [Indexed: 05/09/2023]
Abstract
Plants initialize responses to environmental changes at all levels, from signaling to translation and beyond. Such is the case for fluctuations in the availability of iron (Fe), one of the most critical micronutrients for plants. The results of these responses are physiological and morphological changes that lead to increased iron uptake from the rhizosphere, and recycling and reallocation of Fe, which must be properly localized within specific cells and cellular compartment for use. The use of reductionist approaches, in combination with in vivo and in situ Fe localization tools, has been able to shed light on critical signaling molecules, transcriptional regulators, transporters and other proteins involved in Fe homeostasis. Recent advances in elemental distribution and speciation analysis now enable detection and measurement of Fe and other elements at resolutions never seen before. Moreover, increasing use of systems biology approaches provide a substantially broader perspective of how Fe availability affects processes at many levels. This review highlights the latest in vivo and in situ iron localization approaches and some of the recent advances in understanding mechanisms that control Fe translocation. A broad perspective of how Fe localization data might one day be integrated with large-scale data to create models for Fe homeostasis is presented.
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Affiliation(s)
- Rozalynne Samira
- Department of Plant Biology, North Carolina State University, Raleigh, NC 27695, USA
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Sudre D, Gutierrez-Carbonell E, Lattanzio G, Rellán-Álvarez R, Gaymard F, Wohlgemuth G, Fiehn O, Alvarez-Fernández A, Zamarreño AM, Bacaicoa E, Duy D, García-Mina JM, Abadía J, Philippar K, López-Millán AF, Briat JF. Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an Arabidopsis ferritin mutant. JOURNAL OF EXPERIMENTAL BOTANY 2013; 64:2665-88. [PMID: 23682113 PMCID: PMC3697946 DOI: 10.1093/jxb/ert112] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Iron homeostasis is an important process for flower development and plant fertility. The role of plastids in these processes has been shown to be essential. To document the relationships between plastid iron homeostasis and flower biology further, a global study (transcriptome, proteome, metabolome, and hormone analysis) was performed of Arabidopsis flowers from wild-type and triple atfer1-3-4 ferritin mutant plants grown under iron-sufficient or excess conditions. Some major modifications in specific functional categories were consistently observed at these three omic levels, although no significant overlaps of specific transcripts and proteins were detected. These modifications concerned redox reactions and oxidative stress, as well as amino acid and protein catabolism, this latter point being exemplified by an almost 10-fold increase in urea concentration of atfer1-3-4 flowers from plants grown under iron excess conditions. The mutant background caused alterations in Fe-haem redox proteins located in membranes and in hormone-responsive proteins. Specific effects of excess Fe in the mutant included further changes in these categories, supporting the idea that the mutant is facing a more intense Fe/redox stress than the wild type. The mutation and/or excess Fe had a strong impact at the membrane level, as denoted by the changes in the transporter and lipid metabolism categories. In spite of the large number of genes and proteins responsive to hormones found to be regulated in this study, changes in the hormonal balance were restricted to cytokinins, especially in the mutant plants grown under Fe excess conditions.
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Affiliation(s)
- Damien Sudre
- Biochimie et Physiologie Moléculaire des Plantes, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Montpellier 2, SupAgro. Bat 7, 2 place Viala, 34060 Montpellier cedex 1, France.
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Lan P, Li W, Schmidt W. A digital compendium of genes mediating the reversible phosphorylation of proteins in fe-deficient Arabidopsis roots. FRONTIERS IN PLANT SCIENCE 2013; 4:173. [PMID: 23761801 PMCID: PMC3669753 DOI: 10.3389/fpls.2013.00173] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Accepted: 05/15/2013] [Indexed: 05/23/2023]
Abstract
Post-translational modifications of proteins such as reversible phosphorylation provide an important but understudied regulatory network that controls important nodes in the adaptation of plants to environmental conditions. Iron (Fe) is an essential mineral nutrient for plants, but due to its low solubility often a limiting factor for optimal growth. To understand the role of protein phosphorylation in the regulation of cellular Fe homeostasis, we analyzed the expression of protein kinases (PKs) and phosphatases (PPs) in Arabidopsis roots by mining differentially expressed PK and PP genes. Transcriptome analysis using RNA-seq revealed that subsets of 203 PK and 39 PP genes were differentially expressed under Fe-deficient conditions. Functional modules of these PK and PP genes were further generated based on co-expression analysis using the MACCU toolbox on the basis of 300 publicly available root-related microarray data sets. Results revealed networks comprising 87 known or annotated PK and PP genes that could be subdivided into one large and several smaller highly co-expressed gene modules. The largest module was composed of 58 genes, most of which have been assigned to the leucine-rich repeat protein kinase superfamily and associated with the biological processes "hypotonic salinity response," "potassium ion import," and "cellular potassium ion homeostasis." The comprehensive transcriptional information on PK and PP genes in iron-deficient roots provided here sets the stage for follow-up experiments and contributes to our understanding of the post-translational regulation of Fe deficiency and potassium ion homeostasis.
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Affiliation(s)
- Ping Lan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy Sciences, Nanjing, China
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Wenfeng Li
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
| | - Wolfgang Schmidt
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
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Iron (Fe) speciation in xylem sap by XANES at a high brilliant synchrotron X-ray source: opportunities and limitations. Anal Bioanal Chem 2013; 405:5411-9. [DOI: 10.1007/s00216-013-6959-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2013] [Revised: 03/27/2013] [Accepted: 03/28/2013] [Indexed: 11/24/2022]
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Kabir AH, Paltridge NG, Roessner U, Stangoulis JCR. Mechanisms associated with Fe-deficiency tolerance and signaling in shoots of Pisum sativum. PHYSIOLOGIA PLANTARUM 2013; 147:381-95. [PMID: 22913816 DOI: 10.1111/j.1399-3054.2012.01682.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2012] [Revised: 06/13/2012] [Indexed: 05/23/2023]
Abstract
Mechanisms of Fe-deficiency tolerance and signaling were investigated in shoots of Santi (deficiency tolerant) and Parafield (deficiency intolerant) pea genotypes using metabolomic and physiological approaches. From metabolomic studies, Fe deficiency induced significant increases in N-, S- and tricarboxylic acid cycle metabolites in Santi but not in Parafield. Elevated N metabolites reflect an increase in N-recycling processes. Increased glutathione and S-metabolites suggest better protection of pea plants from Fe-deficiency-induced oxidative stress. Furthermore, Fe-deficiency induced increases in citrate and malate in leaves of Santi suggests long-distance transport of Fe is promoted by better xylem unloading. Supporting a role of citrate in the deficiency tolerance mechanism, physiological experiments showed higher Fe and citrate in the xylem of Santi. Reciprocal-grafting experiments confirm that the Fe-deficiency signal driving root Fe reductase and proton extrusion activity is generated in the shoot. Finally, our studies show that auxin can induce increased Fe-reductase activity and proton extrusion in roots. This article identifies several mechanisms in shoots associated with the differential Fe-deficiency tolerance of genotypes within a species, and provides essential background for future efforts to improve the Fe content and deficiency tolerance in peas.
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Affiliation(s)
- Ahmad H Kabir
- School of Biological Sciences, Flinders University, Bedford Park, 5042, SA, Australia.
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Borlotti A, Vigani G, Zocchi G. Iron deficiency affects nitrogen metabolism in cucumber (Cucumis sativus L.) plants. BMC PLANT BIOLOGY 2012; 12:189. [PMID: 23057967 PMCID: PMC3539955 DOI: 10.1186/1471-2229-12-189] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2012] [Accepted: 10/09/2012] [Indexed: 05/19/2023]
Abstract
BACKGROUND Nitrogen is a principal limiting nutrient in plant growth and development. Among factors that may limit NO3- assimilation, Fe potentially plays a crucial role being a metal cofactor of enzymes of the reductive assimilatory pathway. Very few information is available about the changes of nitrogen metabolism occurring under Fe deficiency in Strategy I plants. The aim of this work was to study how cucumber (Cucumis sativus L.) plants modify their nitrogen metabolism when grown under iron deficiency. RESULTS The activity of enzymes involved in the reductive assimilation of nitrate and the reactions that produce the substrates for the ammonium assimilation both at root and at leaf levels in Fe-deficient cucumber plants were investigated. Under Fe deficiency, only nitrate reductase (EC 1.7.1.1) activity decreased both at the root and leaf level, whilst for glutamine synthetase (EC 6.3.1.2) and glutamate synthase (EC 1.4.1.14) an increase was found. Accordingly, the transcript analysis for these enzymes showed the same behaviour except for root nitrate reductase which increased. Furthermore, it was found that amino acid concentration greatly decreased in Fe-deficient roots, whilst it increased in the corresponding leaves. Moreover, amino acids increased in the xylem sap of Fe-deficient plants. CONCLUSIONS The data obtained in this work provided new insights on the responses of plants to Fe deficiency, suggesting that this nutritional disorder differentially affected N metabolism in root and in leaf. Indeed under Fe deficiency, roots respond more efficiently, sustaining the whole plant by furnishing metabolites (i.e. aa, organic acids) to the leaves.
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Affiliation(s)
- Andrea Borlotti
- Dipartimento di Scienze Agrarie e Ambientali - Produzione, Territorio, Agroenergia, Università degli Studi di Milano, Via Celoria 2, I-20133, Milano, Italy
| | - Gianpiero Vigani
- Dipartimento di Scienze Agrarie e Ambientali - Produzione, Territorio, Agroenergia, Università degli Studi di Milano, Via Celoria 2, I-20133, Milano, Italy
| | - Graziano Zocchi
- Dipartimento di Scienze Agrarie e Ambientali - Produzione, Territorio, Agroenergia, Università degli Studi di Milano, Via Celoria 2, I-20133, Milano, Italy
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Shi R, Weber G, Köster J, Reza-Hajirezaei M, Zou C, Zhang F, von Wirén N. Senescence-induced iron mobilization in source leaves of barley (Hordeum vulgare) plants. THE NEW PHYTOLOGIST 2012; 195:372-383. [PMID: 22591276 DOI: 10.1111/j.1469-8137.2012.04165.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
• Retranslocation of iron (Fe) from source leaves to sinks requires soluble Fe binding forms. As much of the Fe is protein-bound and associated with the leaf nitrogen (N) status, we investigated the role of N in Fe mobilization and retranslocation under N deficiency- vs dark-induced leaf senescence. • By excluding Fe retranslocation from the apoplastic root pool, Fe concentrations in source and sink leaves from hydroponically grown barley (Hordeum vulgare) plants were determined in parallel with the concentrations of potential Fe chelators and the expression of genes involved in phytosiderophore biosynthesis. • N supply showed opposing effects on Fe pools in source leaves, inhibiting Fe export out of source leaves under N sufficiency but stimulating Fe export from source leaves under N deficiency, which partially alleviated Fe deficiency-induced chlorosis. Both triggers of leaf senescence, shading and N deficiency, enhanced NICOTIANAMINE SYNTHASE2 gene expression, soluble Fe pools in source leaves, and phytosiderophore and citrate rather than nicotianamine concentrations. • These results indicate that Fe mobilization within senescing leaves is independent of a concomitant N sink in young leaves and that phytosiderophores enhance Fe solubility in senescing source leaves, favoring subsequent Fe retranslocation.
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Affiliation(s)
- Rongli Shi
- Molecular Plant Nutrition, Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Gatersleben, Germany
- Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Günther Weber
- Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Bunsen-Kirchhoff-Str 11, 44139 Dortmund, Germany
| | - Jessica Köster
- Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V., Bunsen-Kirchhoff-Str 11, 44139 Dortmund, Germany
| | - Mohammad Reza-Hajirezaei
- Molecular Plant Nutrition, Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Gatersleben, Germany
| | - Chunqin Zou
- Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Fusuo Zhang
- Department of Plant Nutrition, College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Nicolaus von Wirén
- Molecular Plant Nutrition, Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466 Gatersleben, Germany
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