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Sena L, Mica E, Valè G, Vaccino P, Pecchioni N. Exploring the potential of endophyte-plant interactions for improving crop sustainable yields in a changing climate. FRONTIERS IN PLANT SCIENCE 2024; 15:1349401. [PMID: 38571718 PMCID: PMC10988515 DOI: 10.3389/fpls.2024.1349401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Accepted: 03/05/2024] [Indexed: 04/05/2024]
Abstract
Climate change poses a major threat to global food security, significantly reducing crop yields as cause of abiotic stresses, and for boosting the spread of new and old pathogens and pests. Sustainable crop management as a route to mitigation poses the challenge of recruiting an array of solutions and tools for the new aims. Among these, the deployment of positive interactions between the micro-biotic components of agroecosystems and plants can play a highly significant role, as part of the agro-ecological revolution. Endophytic microorganisms have emerged as a promising solution to tackle this challenge. Among these, Arbuscular Mycorrhizal Fungi (AMF) and endophytic bacteria and fungi have demonstrated their potential to alleviate abiotic stresses such as drought and heat stress, as well as the impacts of biotic stresses. They can enhance crop yields in a sustainable way also by other mechanisms, such as improving the nutrient uptake, or by direct effects on plant physiology. In this review we summarize and update on the main types of endophytes, we highlight several studies that demonstrate their efficacy in improving sustainable yields and explore possible avenues for implementing crop-microbiota interactions. The mechanisms underlying these interactions are highly complex and require a comprehensive understanding. For this reason, omic technologies such as genomics, transcriptomics, proteomics, and metabolomics have been employed to unravel, by a higher level of information, the complex network of interactions between plants and microorganisms. Therefore, we also discuss the various omic approaches and techniques that have been used so far to study plant-endophyte interactions.
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Affiliation(s)
- Lorenzo Sena
- Dipartimento di Scienze della Vita, Sede Agraria, UNIMORE - Università di Modena e Reggio Emilia, Reggio Emilia, Italy
- Centro di Ricerca Cerealicoltura e Colture Industriali, CREA – Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Vercelli, Italy
| | - Erica Mica
- Dipartimento per lo Sviluppo Sostenibile e la Transizione Ecologica, UPO – Università del Piemonte Orientale, Complesso San Giuseppe, Vercelli, Italy
| | - Giampiero Valè
- Dipartimento per lo Sviluppo Sostenibile e la Transizione Ecologica, UPO – Università del Piemonte Orientale, Complesso San Giuseppe, Vercelli, Italy
| | - Patrizia Vaccino
- Centro di Ricerca Cerealicoltura e Colture Industriali, CREA – Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Vercelli, Italy
| | - Nicola Pecchioni
- Dipartimento di Scienze della Vita, Sede Agraria, UNIMORE - Università di Modena e Reggio Emilia, Reggio Emilia, Italy
- Centro di Ricerca Cerealicoltura e Colture Industriali, CREA – Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Vercelli, Italy
- Centro di Ricerca Cerealicoltura e Colture Industriali, CREA – Consiglio per la Ricerca in Agricoltura e l’Analisi dell’Economia Agraria, Foggia, Italy
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Igarashi S, Yoshida S, Kenzo T, Sakai S, Nagamasu H, Hyodo F, Tayasu I, Mohamad M, Ichie T. No evidence of carbon storage usage for seed production in 18 dipterocarp masting species in a tropical rain forest. Oecologia 2024; 204:717-726. [PMID: 38483587 DOI: 10.1007/s00442-024-05527-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 02/07/2024] [Indexed: 03/20/2024]
Abstract
Most canopy species in lowland tropical rain forests in Southeast Asia, represented by Dipterocarpaceae, undergo mast reproduction synchronously at community level during a general flowering event. Such events occur at irregular intervals of 2-10 years. Some species do not necessarily participate in every synchronous mast reproduction, however. This may be due to a lack of carbohydrate resources in the trees for masting. We tested the hypothesis that interspecific differences in the time required to store assimilates in trees for seed production are due to the frequency of masting and/or seed size in each species. We examined the relationship between reproductive frequency and the carbon accumulation period necessary for seed production, and between the seed size and the period, using radiocarbon analysis in 18 dipterocarp canopy species. The mean carbon accumulation period was 0.84 years before seed maturation in all species studied. The carbon accumulation period did not have any significant correlation with reproductive frequency or seed size, both of which varied widely across the species studied. Our results show that for seed production, dipterocarp masting species do not use carbon assimilates stored for a period between the masting years, but instead use recent photosynthates produced primarily in a masting year, regardless of the masting interval or seed size of each species. These findings suggest that storage of carbohydrate resources is not a limiting factor in the masting of dipterocarps, and that accumulation and allocation of other resources is important as a precondition for participation in general flowering.
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Affiliation(s)
- Shuichi Igarashi
- Faculty of Agriculture and Marine Science, Kochi University, B200 Monobe, Nankoku, 783‑8502, Japan.
| | - Shohei Yoshida
- Faculty of Agriculture and Marine Science, Kochi University, B200 Monobe, Nankoku, 783‑8502, Japan
| | - Tanaka Kenzo
- Japan International Research Center for Agricultural Sciences, Tsukuba, 305-8686, Japan
| | - Shoko Sakai
- Department of Geography, Hong Kong Baptist University, 15 Baptist University Rd, Kowloon Tong, Hong Kong
- Research Institute for Humanity and Nature, Kyoto, 603-8047, Japan
| | | | - Fujio Hyodo
- Research Core for Interdisciplinary Sciences, Okayama University, Okayama, 700-8530, Japan
| | - Ichiro Tayasu
- Research Institute for Humanity and Nature, Kyoto, 603-8047, Japan
| | - Mohizah Mohamad
- Forest Department Sarawak, 93050, Kuching, Sarawak, Malaysia
| | - Tomoaki Ichie
- Faculty of Agriculture and Marine Science, Kochi University, B200 Monobe, Nankoku, 783‑8502, Japan
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Lian P, Xu L, Yang L, Yue K, Peñuelas J. Divergent soil P accrual in ectomycorrhizal and arbuscular mycorrhizal trees: insights from a common garden experiment in subtropical China. FRONTIERS IN PLANT SCIENCE 2024; 15:1333505. [PMID: 38384764 PMCID: PMC10879435 DOI: 10.3389/fpls.2024.1333505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Accepted: 01/23/2024] [Indexed: 02/23/2024]
Abstract
Tree species establish mycorrhizal associations with both ectomycorrhizal (EM) and arbuscular mycorrhizal fungi (AM), which play crucial roles in facilitating plant phosphorus (P) acquisition. However, little attention has been given to the effects of EM and AM species on soil P dynamics and the underlying mechanisms in subtropical forests, where P availability is typically low. To address this knowledge gap, we selected two EM species (Pinus massoniana - PM and Castanopsis carlesii - CC) and two AM species (Cunninghamia lanceolata - Chinese fir, CF and Michelia macclurei - MM) in a common garden established in 2012 in subtropical China. We investigated soil properties (e.g., pH, soil organic carbon, total nitrogen, and dissolved organic nitrogen), soil P fractions, phospholipid fatty acids (PLFAs), enzyme activities, foliar manganese (Mn) concentration, and foliar nutrients and stoichiometry. Our findings revealed that soils hosting EM species had higher levels of resin P, NaHCO3-Pi, extractable Po, total P, and a greater percentage of extractable Po to total P compared to soils with AM species. These results indicate that EM species enhance soil P availability and organic P accumulation in contrast to AM species. Moreover, EM species exhibited higher P return to soil (indicated by higher foliar P concentrations) when compared to AM species, which partly explains higher P accumulation in soils with EM species. Additionally, resin P showed a positive correlation with acid phosphatase (ACP) activity, whereas no correlation was found with foliar Mn concentration, which serves as a proxy for the mobilization of sorbed soil P. Such findings indicate that organic P mineralization has a more substantial impact than inorganic P desorption in influencing P availability in soils hosting both EM and AM species. In summary, our study contributes to a more comprehensive understanding of the effects of mycorrhizal associations on soil P accumulation in subtropical forests and provide valuable insights into plant-soil interactions and their role in P cycling in regions with limited P availability.
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Affiliation(s)
- Pingping Lian
- School of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
- School of Design, Fujian University of Technology, Fuzhou, China
| | - Linglin Xu
- School of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
- Institute of Geography, Fujian Normal University, Fuzhou, China
| | - Liuming Yang
- School of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
- Institute of Geography, Fujian Normal University, Fuzhou, China
| | - Kai Yue
- School of Geographical Science, Fujian Normal University, Fuzhou, China
- State Key Laboratory of Subtropical Mountain Ecology (Funded by Ministry of Science and Technology and Fujian Province), Fujian Normal University, Fuzhou, China
- Institute of Geography, Fujian Normal University, Fuzhou, China
| | - Josep Peñuelas
- Ecological and Forestry Applications Research Center (CREAF), Cerdanyola del Vallès, Spain
- CSIC, Global Ecology Unit CREAF-CSIC-UAB, Cerdanyola del Vallès, Spain
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Mei Y, Zhang M, Cao G, Zhu J, Zhang A, Bai H, Dai C, Jia Y. Endofungal bacteria and ectomycorrhizal fungi synergistically promote the absorption of organic phosphorus in Pinus massoniana. PLANT, CELL & ENVIRONMENT 2024; 47:600-610. [PMID: 37885374 DOI: 10.1111/pce.14742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 09/02/2023] [Accepted: 10/16/2023] [Indexed: 10/28/2023]
Abstract
Ectomycorrhizal fungi (ECMFs) that are involved in phosphorus mobilisation and turnover have limited ability to mineralise phytate alone. The endofungal bacteria in the ectomycorrhizal fruiting body may contribute to achieving this ecological function of ECMFs. We investigated the synergistic effect and mechanisms of endofungal bacteria and ECMF Suillus grevillea on phytate mineralisation. The results showed that soluble phosphorus content in the combined system of endofungal bacterium Cedecea lapagei and S. grevillea was 1.8 times higher than the sum of C. lapagei and S. grevillea alone treatment under the phytate mineralisation experiment. The S. grevillea could first chemotactically assist C. lapagei in adhering to the surface of S. grevillea. Then, the mineralisation of phytate was synergistically promoted by increasing the biomass of C. lapagei and the phosphatase and phytase activities of S. grevillea. The expression of genes related to chemotaxis, colonisation, and proliferation of C. lapagei and genes related to phosphatase and phytase activity of S. grevillea was also significantly upregulated. Furthermore, in the pot experiment, we verified that there might exist a ternary symbiotic system in the natural forest in which endofungal bacteria and ECMFs could synergistically promote phytate uptake in the plant Pinus massoniana via the ectomycorrhizal system.
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Affiliation(s)
- Yan Mei
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
- College of Life Sciences, Nanjing University, Nanjing, China
| | - Meiling Zhang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Gengyue Cao
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Jiale Zhu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Aiyue Zhang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Hongyan Bai
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Chuanchao Dai
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
| | - Yong Jia
- Jiangsu Key Laboratory for Microbes and Functional Genomics, Jiangsu Engineering and Technology Research Center for Industrialisation of Microbial Resources, College of Life Sciences, Nanjing Normal University, Nanjing, China
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Eusterhues K, Thieme J, Narvekar S, Araki T, Kazemian M, Kaulich B, Regier T, Wang J, Lugmeier J, Höschen C, Mansfeldt T, Totsche KU. Importance of inner-sphere P-O-Fe bonds in natural and synthetic mineral-organic associations. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 905:167232. [PMID: 37734608 DOI: 10.1016/j.scitotenv.2023.167232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Revised: 09/14/2023] [Accepted: 09/18/2023] [Indexed: 09/23/2023]
Abstract
Sorption of organic molecules on mineral surfaces can occur through several binding mechanisms of varying strength. Here, we investigated the importance of inner-sphere P-O-Fe bonds in synthetic and natural mineral-organic associations. Natural organic matter such as water extracted soil organic matter (WESOM) and extracellular polymeric substances (EPS) from liquid bacterial cultures were adsorbed to goethite and examined by FTIR spectroscopy and P K-edge NEXAFS spectroscopy. Natural particles from a Bg soil horizon (Gleysol) were subjected to X-ray fluorescence (XRF) mapping, NanoSIMS imaging, and NEXAFS spectro-microscopy at the P K-edge. Inner-sphere P-O-Fe bonds were identified for both, adsorbed EPS extracts and adsorbed WESOMs. Characteristic infrared peaks for P-O-Fe stretching vibrations are present but cannot unambiguously be interpreted due to possible interferences with mono- and polysaccharides. For the Bg horizon, P was only found on Fe oxides, covering the entire surface at different concentrations, but not on clay minerals. Linear combination fitting of NEXAFS spectra indicates that this adsorbed P is mainly a mixture of orthophosphate and organic P compounds. By combining atomic force microscopy (AFM) images with STXM-generated C and Fe distribution maps, we show that the Fe oxide surfaces were fully coated with organic matter. In contrast, clay minerals revealed a much lower C signal. The C NEXAFS spectra taken on the Fe oxides had a substantial contribution of carboxylic C, aliphatic C, and O-alkyl C, which is a composition clearly different from pure adsorbed EPS or aromatic-rich lignin-derived compounds. Our data show that inner-sphere P-O-Fe bonds are important for the association of Fe oxides with soil organic matter. In the Bg horizon, carboxyl groups and orthophosphate compete with the organic P compounds for adsorption sites.
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Affiliation(s)
- Karin Eusterhues
- Institut für Geowissenschaften, Friedrich-Schiller-Universität Jena, Burgweg 11, 07749 Jena, Germany.
| | - Jürgen Thieme
- NSLS II, Brookhaven National Laboratory, Upton, NY-11973, USA
| | - Sneha Narvekar
- Institut für Geowissenschaften, Friedrich-Schiller-Universität Jena, Burgweg 11, 07749 Jena, Germany
| | - Tohru Araki
- Diamond Light Source, Didcot, OX11 0DE, United Kingdom
| | | | | | - Tom Regier
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 5A8, Canada
| | - Jian Wang
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 5A8, Canada
| | - Johann Lugmeier
- Technical University of Munich, TUM School of Life Sciences, Department of Life Science Systems, Soil Science, Emil-Ramann-Str. 2, 85354 Freising, Germany
| | - Carmen Höschen
- Technical University of Munich, TUM School of Life Sciences, Department of Life Science Systems, Soil Science, Emil-Ramann-Str. 2, 85354 Freising, Germany
| | - Tim Mansfeldt
- Department of Geosciences, Institute of Geography, University of Cologne, Germany
| | - Kai Uwe Totsche
- Institut für Geowissenschaften, Friedrich-Schiller-Universität Jena, Burgweg 11, 07749 Jena, Germany
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Johnson D, Liu X, Burslem DFRP. Symbiotic control of canopy dominance in subtropical and tropical forests. TRENDS IN PLANT SCIENCE 2023; 28:995-1003. [PMID: 37087357 DOI: 10.1016/j.tplants.2023.03.027] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 03/29/2023] [Accepted: 03/30/2023] [Indexed: 05/03/2023]
Abstract
Subtropical and tropical forests in Asia often comprise canopy dominant trees that form symbioses with ectomycorrhizal fungi, and species-rich understorey trees that form symbioses with arbuscular mycorrhizal fungi. We propose a virtuous phosphorus acquisition hypothesis to explain this distinct structure. The hypothesis is based on (i) seedlings being rapidly colonised by ectomycorrhizal fungi from established mycelial networks that generates positive feedback and resistance to pathogens, (ii) ectomycorrhizal fungi having evolved a suite of morphological, physiological, and molecular traits to enable them to capture phosphorus from a diversity of chemical forms, including organic forms, and (iii) allocation of photosynthate carbon from adult host plants to provide the energy needed to undertake these processes.
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Affiliation(s)
- David Johnson
- Department of Earth and Environmental Sciences, The University of Manchester, Michael Smith Building, Manchester, M13 9PL, UK.
| | - Xubing Liu
- Department of Ecology, School of Life Sciences/State Key Laboratory of Biocontrol, Sun Yat-sen University, Guangzhou 510275, China
| | - David F R P Burslem
- School of Biological Sciences, Cruickshank Building, University of Aberdeen, Aberdeen, AB24 3UU, UK
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Sáenz-Hidalgo HK, Jacobo-Cuellar JL, Zúñiga-Rodríguez E, Avila-Quezada GD, Olalde-Portugal V, Hashem A, Abd_Allah EF. Soil Structure and Ectomycorrhizal Root Colonization of Pecan Orchards in Northern Mexico. J Fungi (Basel) 2023; 9:jof9040440. [PMID: 37108895 PMCID: PMC10140891 DOI: 10.3390/jof9040440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 03/26/2023] [Accepted: 03/30/2023] [Indexed: 04/08/2023] Open
Abstract
Pecan trees form a symbiotic relationship with ectomycorrhizal fungi (ECM), which actively provide nutrition to the roots and protect them from phytopathogens. Although these trees originated in the southern United States and northern Mexico, information on their root colonization by ECM is insufficient in terms of a representative number of samples, both in these regions and worldwide. Therefore, the objectives of this study were to determine the percentage of ectomycorrhizal colonization (ECM) of pecan trees of different ages in conventional and organic agronomic orchards and to identify ectomycorrhizal sporocarps, both morphologically and molecularly. The rhizospheric soil properties and the ECM percentages were analyzed for 14 Western variety pecan tree orchards between 3 and 48 years of age and grouped according to the agronomic management method. DNA extraction, internal transcribed spacer amplification, and sequencing were conducted on the fungal macroforms. The ECM colonization percentage fluctuated between 31.44 and 59.89%. Soils with low phosphorus content showed higher ECM colonization. The ECM concentrations were relatively homogeneous in relation to the ages of the trees, and organic matter content did not affect the percentage of ECM colonization. The highest ECM percentages occurred with the sandy clay crumb texture soil, with an average of 55% ECM, followed by sandy clay loam soils with 49.5%. The Pisolithus arenarius and Pisolithus tinctorius fungi were molecularly identified from sporocarps associated with pecan trees. This is the first study that reports Pisolithus arenarius as being associated with this tree.
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Affiliation(s)
- Hilda Karina Sáenz-Hidalgo
- Centro de Investigación en Alimentación y Desarrollo, Chihuahua 33089, Mexico
- Facultad de Ciencias Agrotecnológica, Universidad Autónoma de Chihuahua, Campus 1, Chihuahua 31000, Mexico
| | - Juan Luis Jacobo-Cuellar
- Facultad de Ciencias Agrotecnológica, Universidad Autónoma de Chihuahua, Campus 1, Chihuahua 31000, Mexico
| | - Erick Zúñiga-Rodríguez
- Facultad de Ciencias Agrotecnológica, Universidad Autónoma de Chihuahua, Campus 1, Chihuahua 31000, Mexico
| | | | | | - Abeer Hashem
- Botany and Microbiology Department, College of Science, King Saud University, P.O. Box. 2460, Riyadh 11451, Saudi Arabia
| | - Elsayed Fathi Abd_Allah
- Plant Production Department, College of Food and Agricultural Sciences, King Saud University, P.O. Box. 2460, Riyadh 11451, Saudi Arabia
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Bibi S, Irshad M, Ullah F, Mahmood Q, Shahzad M, Tariq MAUR, Hussain Z, Mohiuddin M, An P, Ng AWM, Abbasi A, Hina A, Gonzalez NCT. Phosphorus extractability in relation to soil properties in different fields of fruit orchards under similar ecological conditions of Pakistan. Front Ecol Evol 2023. [DOI: 10.3389/fevo.2022.1077270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
Productivity of an orchard generally depends upon the fertility of the soil and the nutrient requirements of the fruit trees. Phosphorus (P) extractability from soils influences the P sorption, release patterns, and P bioavailability. A study was carried out to investigate P extractability via seven extraction methods in relation to soil properties in three fruit orchards. In total, 10 soil samples were collected from each fruit orchard, namely, citrus (Citrus sinensis L.), loquat (Eriobotrya japonica L.), and guava (Psidium guajava L.), located in similar ecological conditions to the Haripur district of Pakistan. Available P in the soil was extracted using deionized H2O, CaCl2, Mehlich 1, Bray 1, Olsen, HCl, and DTPA methods. Selected soil properties [pH, electrical conductivity (EC), soil organic matter (SOM)], texture, cation exchange capacity (CEC), macronutrients, and micronutrients were also determined. Soils sampled from orchards indicated significant differences in soil properties. Orchards have sequestered more amount of C stock in soil than without an orchard. The extractability of P from soils was profoundly affected by P extraction methods. The average amount of extractable P was relatively higher in those soils where the total amount of P was also higher. These methods extracted different pools of soil P with varying P concentrations regulated by the soil properties. Phosphorus amounts extracted were varied in the order of HCl > DTPA > Mehlich 1 > Bray 1 > Olsen > CaCl2 > water. Among orchards, a higher amount of P was found in soils of loquat followed by citrus and guava orchards. Regardless of the method, subsurface soil got a lower concentration of extractable P than surface soil in all orchards. The extractable P was highly associated with soil properties. DTPA extractable P was related to SOM soil clay content and CEC by R2 values of 0.83, 0.87, and 0.78, respectively. Most of the extraction methods were positively correlated with each other. This study indicated that SOM inputs and turnover associated with orchard trees exhibited a substantial quantity of extractable P in soils. Predicting available P in relation to its bioavailability using these methods in contrasting soils is required.
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Mebrate A, Kippie T, Zeray N, Haile G. Selected physical and chemical properties of soil under different agroecological zone in Gedeo Zone, Southern Ethiopia. Heliyon 2022; 8:e12011. [DOI: 10.1016/j.heliyon.2022.e12011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2022] [Revised: 07/19/2022] [Accepted: 11/23/2022] [Indexed: 12/03/2022] Open
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Abdul Hamid SH, Lananan F, Kasan NA, Yasmin Sayid Abdullah SH, Endut A. Physical profile and chemical composition of a novel fabricated Kaolina as alternative growing media in aquaponics. CHEMOSPHERE 2022; 307:136005. [PMID: 35973500 DOI: 10.1016/j.chemosphere.2022.136005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Revised: 07/30/2022] [Accepted: 08/07/2022] [Indexed: 06/15/2023]
Abstract
The physical profile and chemical composition of growing media are vital in evaluating fish waste filtration efficiency and plant growth performance in aquaponics. The present study reported and compared the physical and chemical evaluation of the novel fabricated Kaolina, gravel, and commercially used lightweight expanded clay aggregate (LECA) as growing medias in aquaponics. Field emission scanning electron microscopy with energy-dispersive X-ray spectroscopy (FESEM-EDX) was utilized to analyze the growing media's chemical composition and structural characterization. The resultant effect of these growing medias on water quality and the growth performance of Clarias gariepinus and Lactuca sativa were also reported. Kaolina exhibited an excellent physical profile (42.95 ± 1.39%) in water absorption capacity as compared to LECA (35.90 ± 1.28%) and gravel (1.97 ± 0.25%), showing a significant difference at p < 0.05. The addition of 25% w/w Musa paradisiaca peel in the fabrication of Kaolina gives an added value of 88.0% of K and 100% of P elements, which show a significant difference (p < 0.05) compared to LECA. The results obtained reveal a better daily growth rate (DGR) and relative growth rate (RGR) of L. sativa at 0.57 ± 0.02 cm day-1 and 0.21 ± 0.00 g day-1, respectively. Results indicated that the porous structure of growing media could contribute to the high-water retention capability and slow the water desorption process. Hence, it could increase the ability of the growing media to hold nutrients for plant intake, resulting in higher removal percentage of nutrients in aquaponics system. Kaolina gives the highest nutrient removal percentage of TAN (96.86 ± 1.50%), NO2- (83.56 ± 1.27%), NO3-(77.55 ± 0.48%), and PO43- (79.46 ± 0.42%). The results also shown growing media has considerable impacts on nutrient removal, which contribute to the aquaponic productions.
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Affiliation(s)
- Siti Hajar Abdul Hamid
- East Coast Environmental Research Institute, Universiti Sultan Zainal Abidin, Gong Badak Campus, 21300 Kuala Nerus, Terengganu, Malaysia.
| | - Fathurrahman Lananan
- East Coast Environmental Research Institute, Universiti Sultan Zainal Abidin, Gong Badak Campus, 21300 Kuala Nerus, Terengganu, Malaysia; Faculty of Bioresource and Food Industry, Universiti Sultan Zainal Abidin, Besut Campus, 22200 Besut, Terengganu, Malaysia.
| | - Nor Azman Kasan
- Higher Institution Centre of Excellence (HICoE), Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia.
| | | | - Azizah Endut
- Faculty of Innovative Design and Technology, Universiti Sultan Zainal Abidin, Gong Badak Campus, 21300 Kuala Nerus, Terengganu, Malaysia.
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Gao Y, Gao S, Bai Y, Meng W, Xu L. Parametarhizium hingganense, a Novel Ectomycorrhizal Fungal Species, Promotes the Growth of Mung Beans and Enhances Resistance to Disease Induced by Rhizoctonia solani. J Fungi (Basel) 2022; 8:jof8090934. [PMID: 36135659 PMCID: PMC9504979 DOI: 10.3390/jof8090934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 08/28/2022] [Accepted: 08/30/2022] [Indexed: 11/16/2022] Open
Abstract
The mutualistic interactions between mycorrhizae and plants first occurred along with the terrestrialization of plants. The majority of vascular plants are in symbiosis with mycorrhizal fungi. Due to their importance to the economy and ecology, arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi emerge as the most popular ones. However, the mechanism underlying the beneficial function of ECM fungi is not as clear as AM fungi. Here, the interaction between Parametarhizium hingganense, a novel fungal species isolated from forest litter, and mung bean (Vigna radiata) was studied. P. hingganense demonstrated P solubilization ability in vitro. Treatment of P. hingganense on the seeds resulted in promoted growth with enhanced P content. The hyphae of green fluorescence protein (GFP)-tagged P. hingganense were found to surround the roots and develop between cells, suggesting the establishment of an ectomycorrhizal symbiosis. Upon symbiosis with P. hingganense, the levels of jasmonic acid (JA) and gibberellin (GA1) and total phenolic and flavonoid content elevated. Meanwhile, damping off caused by Rhizoctonia solani in mycorrhizal plants was alleviated. Taken together, the above findings suggested that symbiosis with P. hingganense conferred growth promotion and priming of defense responses to host plants which should be associated with facilitated P uptake and increased JA and GA1 levels.
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Affiliation(s)
- Ying Gao
- College of Life Science, Northeast Forestry University, Harbin 150040, China
| | - Siyu Gao
- College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Yang Bai
- College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
| | - Wei Meng
- College of Life Science, Northeast Forestry University, Harbin 150040, China
- Key Laboratory of Saline-alkali Vegetation Ecology Restoration (Northeast Forestry University), Ministry of Education, Harbin 150040, China
- Correspondence: (W.M.); (L.X.)
| | - Lijian Xu
- College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin 150080, China
- Correspondence: (W.M.); (L.X.)
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12
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Sauvadet M, Trap J, Damour G, Plassard C, Van den Meersche K, Achard R, Allinne C, Autfray P, Bertrand I, Blanchart E, Deberdt P, Enock S, Essobo JD, Freschet GT, Hedde M, de Melo Virginio Filho E, Rabary B, Rakotoarivelo M, Randriamanantsoa R, Rhino B, Ripoche A, Rosalie E, Saj S, Becquer T, Tixier P, Harmand JM. Agroecosystem diversification with legumes or non-legumes improves differently soil fertility according to soil type. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 795:148934. [PMID: 34328927 DOI: 10.1016/j.scitotenv.2021.148934] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Revised: 06/03/2021] [Accepted: 07/05/2021] [Indexed: 05/23/2023]
Abstract
Plant diversification through crop rotation or agroforestry is a promising way to improve sustainability of agroecosystems. Nonetheless, criteria to select the most suitable plant communities for agroecosystems diversification facing contrasting environmental constraints need to be refined. Here, we compared the impacts of 24 different plant communities on soil fertility across six tropical agroecosystems: either on highly weathered Ferralsols, with strong P limitation, or on partially weathered soils derived from volcanic material, with major N limitation. In each agroecosystem, we tested several plant communities for diversification, as compared to a matching low diversity management for their cropping system. Plant residue restitution, N, P and lignin contents were measured for each plant community. In parallel, the soil under each community was analyzed for organic C and N, inorganic N, Olsen P, soil pH and nematode community composition. Soil potential fertility was assessed with plant bioassays under greenhouse controlled climatic conditions. Overall, plant diversification had a positive effect on soil fertility across all sites, with contrasting effects depending on soil type and legumes presence in the community. Communities with legumes improved soil fertility indicators of volcanic soils, which was demonstrated through significantly higher plant biomass production in the bioassays (+18%) and soil inorganic N (+26%) compared to the low diversity management. Contrastingly, communities without legumes were the most beneficial in Ferralsols, with increases in plant biomass production in the bioassays (+39%), soil Olsen P (+46%), soil C (+26%), and pH (+5%). Piecewise structural equation models with Shipley's test revealed that plant diversification impacts on volcanic soil fertility were related to soil N availability, driven by litter N. Meanwhile, Ferralsols fertility was related to soil P availability, driven by litter P. These findings underline the importance of multifactorial and multi-sites experiments to inform trait-based frameworks used in designing optimal plant diversification in agroecological systems.
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Affiliation(s)
- Marie Sauvadet
- Eco&Sols, Institut Agro, Univ Montpellier, CIRAD, INRAE, IRD, F-34060 Montpellier, France; Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR GECO, F-34398 Montpellier, France.
| | - Jean Trap
- Eco&Sols, Institut Agro, Univ Montpellier, CIRAD, INRAE, IRD, F-34060 Montpellier, France
| | - Gaëlle Damour
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR GECO, F-34398 Montpellier, France
| | - Claude Plassard
- Eco&Sols, Institut Agro, Univ Montpellier, CIRAD, INRAE, IRD, F-34060 Montpellier, France
| | - Karel Van den Meersche
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UMR Eco&Sols, F-34398 Montpellier, France; CATIE (Tropical Agricultural Research and Higher Education Center), Turrialba 7170, Costa Rica
| | - Raphaël Achard
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR GECO, F-34398 Montpellier, France; CIRAD, UPR GECO, F-97285 Le Lamentin, Martinique, France
| | - Clémentine Allinne
- Univ Montpellier, F-34398 Montpellier, France; CATIE (Tropical Agricultural Research and Higher Education Center), Turrialba 7170, Costa Rica; SYSTEM, Univ Montpellier, CIHEAM-IAMM, CIRAD, INRAE, Institut Agro, F-34060 Montpellier, France
| | - Patrice Autfray
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR AIDA, BP 110 Antsirabe, Madagascar; FOFIFA SRR, BP 230 Antsirabe, Madagascar
| | - Isabelle Bertrand
- Eco&Sols, Institut Agro, Univ Montpellier, CIRAD, INRAE, IRD, F-34060 Montpellier, France
| | - Eric Blanchart
- Eco&Sols, Institut Agro, Univ Montpellier, CIRAD, INRAE, IRD, F-34060 Montpellier, France
| | - Péninna Deberdt
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR HORTSYS, F-97285 Le Lamentin, France
| | - Séguy Enock
- ICRAF (World Agroforestry), West and Central Africa Regional Program, Yaounde, Cameroon
| | - Jean-Daniel Essobo
- ICRAF (World Agroforestry), West and Central Africa Regional Program, Yaounde, Cameroon
| | - Grégoire T Freschet
- CNRS, Station d'Ecologie Théorique et Expérimentale, F-09200 Moulis, France; CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Institut Agro, INRAE, F-34293 Montpellier, France
| | - Mickaël Hedde
- Eco&Sols, Institut Agro, Univ Montpellier, CIRAD, INRAE, IRD, F-34060 Montpellier, France
| | | | | | - Miora Rakotoarivelo
- Université d'Antananarivo, Ecole Supérieure des Sciences Agronomiques, BP 175 Antananarivo, Madagascar
| | | | - Béatrice Rhino
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR HORTSYS, F-97285 Le Lamentin, France
| | - Aude Ripoche
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR AIDA, BP 110 Antsirabe, Madagascar; FOFIFA SRR, BP 230 Antsirabe, Madagascar
| | - Elisabeth Rosalie
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR GECO, F-34398 Montpellier, France; CIRAD, UPR GECO, F-97285 Le Lamentin, Martinique, France
| | - Stéphane Saj
- Univ Montpellier, F-34398 Montpellier, France; SYSTEM, Univ Montpellier, CIHEAM-IAMM, CIRAD, INRAE, Institut Agro, F-34060 Montpellier, France; ICRAF (World Agroforestry), West and Central Africa Regional Program, Yaounde, Cameroon
| | - Thierry Becquer
- Eco&Sols, Institut Agro, Univ Montpellier, CIRAD, INRAE, IRD, F-34060 Montpellier, France
| | - Philippe Tixier
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UPR GECO, F-34398 Montpellier, France
| | - Jean-Michel Harmand
- Univ Montpellier, F-34398 Montpellier, France; CIRAD, UMR Eco&Sols, F-34398 Montpellier, France; ICRAF (World Agroforestry), West and Central Africa Regional Program, Yaounde, Cameroon
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13
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Khalid M, Du B, Tan H, Liu X, Su L, Ali M, Liu C, Sun N, Hui N. Phosphorus elevation erodes ectomycorrhizal community diversity and induces divergence of saprophytic community composition between vegetation types. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 793:148502. [PMID: 34166904 DOI: 10.1016/j.scitotenv.2021.148502] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 06/13/2021] [Accepted: 06/13/2021] [Indexed: 06/13/2023]
Abstract
Phosphorus (P) is a critical macronutrient that is essential for many life-sustaining processes. Despite decades of work on plant performance under P deficiency and the importance of microbes in ecosystem processes, little is known about how bacterial and fungal flora respond to P gradients and determine the vegetation health. In current study, we examined soil edaphic conditions and microbial communities in 39 untouched natural forests representing phosphorous deficient (Pp) and phosphorus rich (Pr) soils (due to naturally occurring phosphate rocks) in Yunnan Province, China. We also considered the effect of plant functional types by including the dominant tree species. Bacterial and fungal diversity was greater across the Pp sites compared with Pr sites. The relative abundance of Actinobacteria and Gemmatimonadetes was higher across Pp sites, while Chlamydiae and Verrucomicrobia showed the opposite pattern, with greater relative abundance across the Pr sites. Bacterial taxa that were observed in low P soils were more likely having oligotrophic life history strategies. Interestingly, ectomycorrhizal (ECM) fungal diversity was promoted in the Pp sites, indicating that the decreasing soil P concentration and the increasing host P demand foster stimulated the ECM species for hyphal soil exploration. Moreover, the high P level caused saprophytic fungi (SAP) to diverge, causing its enrichment only under Q. variabilis compared to low P soil, where there is no difference in relative abundance of SAP between the two tree species. This likely resulted in an enhanced decomposition process by SAP and elevation of soil properties (Carbon and Nitrogen) under Q. variabilis across the Pr sites. Taken together, our findings highlight the highly diverse microbiome in low P soils. The higher soil P caused shifts of fungal functional guilds, which likely influence tree growth and health (ECM), along with divergence of ecosystem services between tree functional types.
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Affiliation(s)
- Muhammad Khalid
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Baoming Du
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Haoxin Tan
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xinxin Liu
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Lantian Su
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Mehran Ali
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Chunjiang Liu
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Ningxiao Sun
- School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Nan Hui
- Key Laboratory of Urban Agriculture, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 200240, China; Shanghai Yangtze River Delta Eco-Environmental Change and Management Observation and Research Station, Ministry of Science and Technology, Ministry of Education, 800 Dongchuan Rd, Shanghai 200240, China; Shanghai Urban Forest Ecosystem Research Station, National Forestry and Grassland Administration, 800 Dongchuan Rd., Shanghai 200240, China.
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14
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Kavka M, Majcherczyk A, Kües U, Polle A. Phylogeny, tissue-specific expression, and activities of root-secreted purple acid phosphatases for P uptake from ATP in P starved poplar. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 307:110906. [PMID: 33902862 DOI: 10.1016/j.plantsci.2021.110906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 03/19/2021] [Accepted: 04/04/2021] [Indexed: 06/12/2023]
Abstract
Plants secrete purple acid phosphatases (PAPs) under phosphorus (P) shortage but the contribution of plant PAPs to P acquisition is not well understood. The goals of this study were to investigate comprehensively the transcription patterns of PAPs under P shortage in poplar (Populus × canescens), to identify secreted PAPs and to characterize their contribution to mobilize organic P. Phylogenetic analyses of the PAP family revealed 33 putative members. In this study, distinct, tissue-specific P responsive expression patterns could be shown for 23 PAPs in roots and leaves. Root-associated PAP activities were localized on the root surface by in-vivo staining. The activities of root-surface PAPs increased significantly under low P availability, but were suppressed by a PAP inhibitor and corresponded to elevated P uptake from ATP as an organic P source. By proteomic analyses of the root apoplast, we identified three newly secreted proteins under P shortage: PtPAP1 (Potri.005G233400) and two proteins with unknown functions (Potri.013G100800 and Potri.001G209300). Our results, based on the combination of transcriptome and proteome analyses with phosphatase activity assays, support that PtPAP1 plays a central role in enhanced P acquisition from organic sources, when the phosphate concentrations in soil are limited.
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Affiliation(s)
- Mareike Kavka
- Forest Botany and Tree Physiology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany; Laboratory for Radio-Isotopes, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany.
| | - Andrzej Majcherczyk
- Molecular Wood Biotechnology and Technical Mycology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany.
| | - Ursula Kües
- Molecular Wood Biotechnology and Technical Mycology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany; Center of Sustainable Land Use, University of Göttingen, Büsgenweg 1, 37077 Göttingen, Germany; Center for Molecular Biosciences (GZMB), Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
| | - Andrea Polle
- Forest Botany and Tree Physiology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany; Laboratory for Radio-Isotopes, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany; Center of Sustainable Land Use, University of Göttingen, Büsgenweg 1, 37077 Göttingen, Germany; Center for Molecular Biosciences (GZMB), Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
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15
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Tagirdzhanova G, Saary P, Tingley JP, Díaz-Escandón D, Abbott DW, Finn RD, Spribille T. Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes. Genome Biol Evol 2021; 13:6163286. [PMID: 33693712 PMCID: PMC8355462 DOI: 10.1093/gbe/evab047] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/03/2021] [Indexed: 12/15/2022] Open
Abstract
Basidiomycete yeasts have recently been reported as stably associated secondary
fungal symbionts of many lichens, but their role in the symbiosis remains
unknown. Attempts to sequence their genomes have been hampered both by the
inability to culture them and their low abundance in the lichen thallus
alongside two dominant eukaryotes (an ascomycete fungus and chlorophyte alga).
Using the lichen Alectoria sarmentosa, we selectively dissolved
the cortex layer in which secondary fungal symbionts are embedded to enrich
yeast cell abundance and sequenced DNA from the resulting slurries as well as
bulk lichen thallus. In addition to yielding a near-complete genome of the
filamentous ascomycete using both methods, metagenomes from cortex slurries
yielded a 36- to 84-fold increase in coverage and near-complete genomes for two
basidiomycete species, members of the classes Cystobasidiomycetes and
Tremellomycetes. The ascomycete possesses the largest gene repertoire of the
three. It is enriched in proteases often associated with pathogenicity and
harbors the majority of predicted secondary metabolite clusters. The
basidiomycete genomes possess ∼35% fewer predicted genes than the
ascomycete and have reduced secretomes even compared with close relatives, while
exhibiting signs of nutrient limitation and scavenging. Furthermore, both
basidiomycetes are enriched in genes coding for enzymes producing secreted
acidic polysaccharides, representing a potential contribution to the shared
extracellular matrix. All three fungi retain genes involved in dimorphic
switching, despite the ascomycete not being known to possess a yeast stage. The
basidiomycete genomes are an important new resource for exploration of lifestyle
and function in fungal–fungal interactions in lichen symbioses.
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Affiliation(s)
- Gulnara Tagirdzhanova
- Department of Biological Sciences CW405, University of Alberta, Edmonton, Alberta, Canada
| | - Paul Saary
- European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
| | - Jeffrey P Tingley
- Agriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, Alberta, Canada
| | - David Díaz-Escandón
- Department of Biological Sciences CW405, University of Alberta, Edmonton, Alberta, Canada
| | - D Wade Abbott
- Agriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, Alberta, Canada
| | - Robert D Finn
- European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom
| | - Toby Spribille
- Department of Biological Sciences CW405, University of Alberta, Edmonton, Alberta, Canada
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16
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Clausing S, Pena R, Song B, Müller K, Mayer-Gruner P, Marhan S, Grafe M, Schulz S, Krüger J, Lang F, Schloter M, Kandeler E, Polle A. Carbohydrate depletion in roots impedes phosphorus nutrition in young forest trees. THE NEW PHYTOLOGIST 2021; 229:2611-2624. [PMID: 33128821 DOI: 10.1111/nph.17058] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 10/26/2020] [Indexed: 06/11/2023]
Abstract
Nutrient imbalances cause the deterioration of tree health in European forests, but the underlying physiological mechanisms are unknown. Here, we investigated the consequences of decreasing root carbohydrate reserves for phosphorus (P) mobilisation and uptake by forest trees. In P-rich and P-poor beech (Fagus sylvatica) forests, naturally grown, young trees were girdled and used to determine root, ectomycorrhizal and microbial activities related to P mobilisation in the organic layer and mineral topsoil in comparison with those in nongirdled trees. After girdling, root carbohydrate reserves decreased. Root phosphoenolpyruvate carboxylase activities linking carbon and P metabolism increased. Root and ectomycorrhizal phosphatase activities and the abundances of bacterial genes catalysing major steps in P turnover increased, but soil enzymes involved in P mobilisation were unaffected. The physiological responses to girdling were stronger in P-poor than in P-rich forests. P uptake was decreased after girdling. The soluble and total P concentrations in roots were stable, but fine root biomass declined after girdling. Our results support that carbohydrate depletion results in reduced P uptake, enhanced internal P remobilisation and root biomass trade-off to compensate for the P shortage. As reductions in root biomass render trees more susceptible to drought, our results link tree deterioration with disturbances in the P supply as a consequence of decreased belowground carbohydrate allocation.
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Affiliation(s)
- Simon Clausing
- Forest Botany and Tree Physiology, University of Goettingen, Büsgenweg 2, Göttingen, 37077, Germany
| | - Rodica Pena
- Forest Botany and Tree Physiology, University of Goettingen, Büsgenweg 2, Göttingen, 37077, Germany
| | - Bin Song
- Forest Botany and Tree Physiology, University of Goettingen, Büsgenweg 2, Göttingen, 37077, Germany
| | - Karolin Müller
- Soil Biology Department, Institute of Soil Science and Land Evaluation, University of Hohenheim, Emil-Wolff-Straße 27, Stuttgart, 70593, Germany
| | - Paula Mayer-Gruner
- Soil Biology Department, Institute of Soil Science and Land Evaluation, University of Hohenheim, Emil-Wolff-Straße 27, Stuttgart, 70593, Germany
| | - Sven Marhan
- Soil Biology Department, Institute of Soil Science and Land Evaluation, University of Hohenheim, Emil-Wolff-Straße 27, Stuttgart, 70593, Germany
| | - Martin Grafe
- Research Unit for Comparative Microbiome Analyses, Helmholtz Zentrum München, Ingolstädter Landstraße 1, Neuherberg, 85764, Germany
| | - Stefanie Schulz
- Research Unit for Comparative Microbiome Analyses, Helmholtz Zentrum München, Ingolstädter Landstraße 1, Neuherberg, 85764, Germany
| | - Jaane Krüger
- Soil Ecology, University of Freiburg, Bertoldstraße 17, Freiburg (i. Br.), 79085, Germany
| | - Friederike Lang
- Soil Ecology, University of Freiburg, Bertoldstraße 17, Freiburg (i. Br.), 79085, Germany
| | - Michael Schloter
- Research Unit for Comparative Microbiome Analyses, Helmholtz Zentrum München, Ingolstädter Landstraße 1, Neuherberg, 85764, Germany
| | - Ellen Kandeler
- Soil Biology Department, Institute of Soil Science and Land Evaluation, University of Hohenheim, Emil-Wolff-Straße 27, Stuttgart, 70593, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, University of Goettingen, Büsgenweg 2, Göttingen, 37077, Germany
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17
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Meeds JA, Marty Kranabetter J, Zigg I, Dunn D, Miros F, Shipley P, Jones MD. Phosphorus deficiencies invoke optimal allocation of exoenzymes by ectomycorrhizas. ISME JOURNAL 2021; 15:1478-1489. [PMID: 33420298 PMCID: PMC8114911 DOI: 10.1038/s41396-020-00864-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Revised: 11/20/2020] [Accepted: 11/30/2020] [Indexed: 11/09/2022]
Abstract
Ectomycorrhizal (EM) fungi can acquire phosphorus (P) through the production of extracellular hydrolytic enzymes (exoenzymes), but it is unclear as to the manner and extent native EM fungal communities respond to declining soil P availability. We examined the activity of six exoenzymes (xylosidase, N-acetyl glucosaminidase, β-glucosidase, acid phosphomonoesterase, acid phosphodiesterase [APD], laccase) from EM roots of Pseudotsuga menzesii across a soil podzolization gradient of coastal British Columbia. We found that APD activity increased fourfold in a curvilinear association with declining inorganic P. Exoenzyme activity was not related to organic P content, but at a finer resolution using 31P-NMR, there was a strong positive relationship between APD activity and the ratio of phosphodiesters to orthophosphate of surface organic horizons (forest floors). Substantial increases (two- to fivefold) in most exoenzymes were aligned with declining foliar P concentrations of P. menzesii, but responses were statistically better in relation to foliar nitrogen (N):P ratios. EM fungal species with consistently high production of key exoenzymes were exclusive to Podzol plots. Phosphorus deficiencies in relation to N limitations may provide the best predictor of exoenzyme investment, reflecting an optimal allocation strategy for EM fungi. Resource constraints contribute to species turnover and the assembly of distinct, well-adapted EM fungal communities.
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Affiliation(s)
- Justin A Meeds
- Biology Department, University of British Columbia, Okanagan Campus 1177 Research Road, Kelowna, BC, V4V 1V7, Canada
| | - J Marty Kranabetter
- British Columbia Ministry of Forests, Lands and Natural Resource Operations, P.O. Box 9536, Stn Prov Govt, Victoria, BC, V8W 9C4, Canada.
| | - Ieva Zigg
- Biology Department, University of British Columbia, Okanagan Campus 1177 Research Road, Kelowna, BC, V4V 1V7, Canada.,Chemistry Department, University of British Columbia, Okanagan Campus 3187 University Way, Kelowna, BC, V4V 1V7, Canada
| | - Dave Dunn
- Natural Resources Canada, Pacific Forestry Centre, 506 Burnside Road West, Victoria, BC, V8Z 1M5, Canada
| | - François Miros
- Chemistry Department, University of British Columbia, Okanagan Campus 3187 University Way, Kelowna, BC, V4V 1V7, Canada
| | - Paul Shipley
- Chemistry Department, University of British Columbia, Okanagan Campus 3187 University Way, Kelowna, BC, V4V 1V7, Canada
| | - Melanie D Jones
- Biology Department, University of British Columbia, Okanagan Campus 1177 Research Road, Kelowna, BC, V4V 1V7, Canada
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18
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Rubin JA, Görres JH. Potential for Mycorrhizae-Assisted Phytoremediation of Phosphorus for Improved Water Quality. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 18:E7. [PMID: 33374981 PMCID: PMC7792571 DOI: 10.3390/ijerph18010007] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Revised: 12/09/2020] [Accepted: 12/14/2020] [Indexed: 11/21/2022]
Abstract
During this 6th Great Extinction, freshwater quality is imperiled by upland terrestrial practices. Phosphorus, a macronutrient critical for life, can be a concerning contaminant when excessively present in waterways due to its stimulation of algal and cyanobacterial blooms, with consequences for ecosystem functioning, water use, and human and animal health. Landscape patterns from residential, industrial and agricultural practices release phosphorus at alarming rates and concentrations threaten watershed communities. In an effort to reconcile the anthropogenic effects of phosphorus pollution, several strategies are available to land managers. These include source reduction, contamination event prevention and interception. A total of 80% of terrestrial plants host mycorrhizae which facilitate increased phosphorus uptake and thus removal from soil and water. This symbiotic relationship between fungi and plants facilitates a several-fold increase in phosphorus uptake. It is surprising how little this relationship has been encouraged to mitigate phosphorus for water quality improvement. This paper explores how facilitating this symbiosis in different landscape and land-use contexts can help reduce the application of fertility amendments, prevent non-point source leaching and erosion, and intercept remineralized phosphorus before it enters surface water ecosystems. This literature survey offers promising insights into how mycorrhizae can aid ecological restoration to reconcile humans' damage to Earth's freshwater. We also identify areas where research is needed.
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Affiliation(s)
- Jessica A. Rubin
- Plant and Soil Science, University of Vermont, Burlington, VT 05405, USA;
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Successional trajectory of bacterial communities in soil are shaped by plant-driven changes during secondary succession. Sci Rep 2020; 10:9864. [PMID: 32555419 PMCID: PMC7299987 DOI: 10.1038/s41598-020-66638-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2019] [Accepted: 04/27/2020] [Indexed: 11/08/2022] Open
Abstract
This study investigated the potential role of a nitrogen-fixing early-coloniser Alnus Nepalensis D. Don (alder) in driving the changes in soil bacterial communities during secondary succession. We found that bacterial diversity was positively associated with alder growth during course of ecosystem development. Alder development elicited multiple changes in bacterial community composition and ecological networks. For example, the initial dominance of actinobacteria within bacterial community transitioned to the dominance of proteobacteria with stand development. Ecological networks approximating species associations tend to stabilize with alder growth. Janthinobacterium lividum, Candidatus Xiphinematobacter and Rhodoplanes were indicator species of different growth stages of alder. While the growth stages of alder has a major independent contribution to the bacterial diversity, its influence on the community composition was explained conjointly by the changes in soil properties with alder. Alder growth increased trace mineral element concentrations in the soil and explained 63% of variance in the Shannon-diversity. We also found positive association of alder with late-successional Quercus leucotrichophora (Oak). Together, the changes in soil bacterial community shaped by early-coloniser alder and its positive association with late-successional oak suggests a crucial role played by alder in ecosystem recovery of degraded habitats.
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Laccaria bicolor Mobilizes both Labile Aluminum and Inorganic Phosphate in Rhizosphere Soil of Pinus massoniana Seedlings Field Grown in a Yellow Acidic Soil. Appl Environ Microbiol 2020; 86:AEM.03015-19. [PMID: 32060022 DOI: 10.1128/aem.03015-19] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 02/05/2020] [Indexed: 11/20/2022] Open
Abstract
Plant growth is often limited by highly activated aluminum (Al) and low available phosphorus (P) in acidic soil. Ectomycorrhizal (ECM) fungi can improve their host plants' Al tolerance by increasing P availability while decreasing Al activity in vitro or in hydroponic or sand culture systems. However, the effect of ECM fungi on inorganic P (IP) and labile Al in acidic soil in the field, particularly in conjunction with Al treatment, remains poorly understood. The present study aimed to determine the influence of ECM fungal association on the mobilization of IP and labile Al in rhizosphere soil of host plants grown in the field with external Al treatment and the underlying nutritional mechanism in plant Al tolerance. To do so, 4-week-old Pinus massoniana seedlings were inoculated with three ECM isolates (Laccaria bicolor 270, L. bicolor S238A, and L. bicolor S238N) and grown in a Haplic Alisol field with or without Al treatment for 12 weeks. Results showed that L. bicolor association enhanced the available P depletion and facilitated the mobilization of IP and labile Al, in turn improving the capacity of host plant to use Al-bound P, Ca-bound P, and occluded P, particularly when P. massoniana seedlings were inoculated with L. bicolor S238A. Inoculation with L. bicolor isolates also enhanced the solubility of labile Al and facilitated the conversion of acid-soluble Al into exchangeable Al. Our findings suggested that ECM inoculation could enhance plant Al tolerance in the field by mobilizing IP to improve the P bioavailability but not by decreasing Al activity.IMPORTANCE Here, we reveal the underlying nutritional mechanism in plant Al tolerance conferred by ectomycorrhizal (ECM)-fungus inoculation in the field and report the screening of a promising ECM isolate to assist phytoremediation and afforestation using Pinus massoniana in acidic soil in southern China. This study advances our understanding of the contribution of ECM fungi to plant-ECM-fungus symbiosis and highlights the vital role of ECM-fungus inoculation in plant Al tolerance. In addition, the results described in the present study confirm the importance of carrying out studies in the field rather than only in vitro studies. Our findings strengthen our understanding of the role of ECM-fungus association in detecting, utilizing, and transporting unavailable nutrients in the soil to enhance host plant growth and adaptability in response to adverse habitats.
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Jamil HMA, Ahmed A, Irshad U, Al-Ghamdi AA, Elshikh MS, Alaraidh IA, Al-Dosary MA, Abbasi AM, Ahmad R. Identification and inoculation of fungal strains from Cedrus deodara rhizosphere involve in growth and alleviation of high nitrogen stress. Saudi J Biol Sci 2020; 27:524-534. [PMID: 31889878 PMCID: PMC6933180 DOI: 10.1016/j.sjbs.2019.11.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 11/13/2019] [Accepted: 11/17/2019] [Indexed: 11/29/2022] Open
Abstract
Cedrus deodara is economically and ethnobotanically an important forest tree and is shown to be at decline in Northern areas of Pakistan in recent years mainly due to high concentration of Nitrogen in forests. Ectomycorrhizal (ECM) association forming fungi enables the forest trees to develop optimally by absorbing water from the rhizosphere through their absorptive hyphae and by making available the nutrients by mobilization of N and P from the organic substrates. This study was conducted to identify the ECM strains from C. deodara rhizosphere and to analyse the impact of high N load on the C. deodara seedlings to establish N critical load value for coniferous forests of Pakistan. Six new fungal strains were identified from the rhizosphere of C. deodara and were registered at GenBank (NCBI) as Emmia latemarginata strain ACE1, Aspergillus terreus strain ACE2, Purpureocillium lilacinum strain ACE3, Talaromyces pinophilus strain ACE4, A. fumigatus strain ACE5 and T. pinophilus strain ACE6 with accession numbers MH145426, MH145427, MH145428, MH145429, MH145430 and MH547115. Four out of six isolated strains were inoculated with seedlings of C. deodara singly and in consortium (CN) in combination with nitrogen load of 0 (C), 25 (T1), 50 (T2), 100 kg N ha−1 yr−1 (T3). Agronomic, physiological and gene expression studies for ExpansinA4 (EXPA4) and Cystatins (Cys) were made to analyse the impact of fungal strains in relation to high N stress. This study suggests a positive impact of T1 (25 kg N ha−1 yr−1) Nitrogen load and a negative impact of T3 (100 kg N ha−1 yr−1) on growth parameters and expression patterns of EXPA4 and Cys genes. Peroxidase (POX) activity decreased in the order ACE5 > ACE2 > C > ACE3 > ACE1 > CN. However, the results of Superoxide dismutase (SOD) showed decreasing trend in the order ACE5 > C > CN > ACE1 > ACE2 > ACE3. Strain ACE3 was shown to have a positive impact on the seedlings in terms of growth, physiology and expression of genes. Present study suggests that newly identified fungal strains showing positive impact on the growth and physiology of C. deodara could be used for the propagation of this economically important plant in Pakistan after pathogenicity test.
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Affiliation(s)
- Hafiz Muhammad Ansab Jamil
- Department of Biotechnology, COMSATS University Islamabad, Abbottabad Campus, Abbottabad 22060, Pakistan
| | - Awais Ahmed
- Department of Biotechnology, COMSATS University Islamabad, Abbottabad Campus, Abbottabad 22060, Pakistan
| | - Usman Irshad
- Department of Environmental Sciences, COMSATS University Islamabad, Abbottabad Campus, Abbottabad 22060, Pakistan
| | - Abdullah Ahmed Al-Ghamdi
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mohamed S Elshikh
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Ibrahim A Alaraidh
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Monerah A Al-Dosary
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Arshad Mehmood Abbasi
- Department of Environmental Sciences, COMSATS University Islamabad, Abbottabad Campus, Abbottabad 22060, Pakistan
| | - Rafiq Ahmad
- Department of Biotechnology, COMSATS University Islamabad, Abbottabad Campus, Abbottabad 22060, Pakistan
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Accumulation and Translocation of Phosphorus, Calcium, Magnesium, and Aluminum in Pinus massoniana Lamb. Seedlings Inoculated with Laccaria bicolor Growing in an Acidic Yellow Soil. FORESTS 2019. [DOI: 10.3390/f10121153] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Research Highlights: We demonstrate that ectomycorrhizal (ECM) fungi improve plant aluminum (Al)-tolerance in the field and Laccaria bicolor S238A is a promising ECM isolate. Furthermore, we interpret the underlying nutritional mechanism that ECM inoculation facilitates aboveground biomass production as well as nutrients accumulation and translocation. Background and Objectives: Al toxicity is a primary limiting factor for plants growing in acidic soils. Hydroponic/sand culture studies have shown that some ECM fungi could enhance plant Al-tolerance. However, the underlying mechanisms of ECM fungi in improving plant Al-tolerance in the field are still unknown. To fill this knowledge gap, the present study aimed to examine roles of ECM inoculation in biomass production, accumulation and translocation of nutrients and Al in the host plant grown in the field under Al treatment. Materials and Methods: 4-week-old Pinus massoniana seedlings were inoculated with three Laccaria bicolor isolates (L. bicolor 270, L. bicolor S238A or L. bicolor S238N) and grown in an acidic yellow soil under 1.0 mM Al treatment for 12 weeks in the field. Biomass production, accumulation and translocation of P, Ca, Mg, and Al were investigated in these 16-week-old P. massoniana seedlings. Results: All three of these L. bicolor isolates improved biomass production as well as P, Ca and Mg accumulation in P. massoniana seedlings. Moreover, the three ECM isolates facilitated the translocation of P, Ca, and Mg to aboveground in response to Al treatment, particularly when seedlings were inoculated with L. bicolor S238A. In addition, both L. bicolor 270 and L. bicolor S238A had no apparent effects on Al accumulation, while enhanced Al translocation to aboveground. In contrast, L. bicolor S238N decreased Al accumulation but had no significant effect on Al translocation. Conclusions: ECM fungi in the field improved plant Al-resistance by increasing nutrient uptake, and this was mostly due to translocation of P, Ca, and Mg to aboveground, not by decreasing the uptake and translocation of Al.
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Effect of alder on soil bacteria offers an alternative explanation to the role played by alder in rock weathering. Proc Natl Acad Sci U S A 2019; 116:19786-19788. [PMID: 31467171 DOI: 10.1073/pnas.1910718116] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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Plassard C, Becquer A, Garcia K. Phosphorus Transport in Mycorrhiza: How Far Are We? TRENDS IN PLANT SCIENCE 2019; 24:794-801. [PMID: 31272899 DOI: 10.1016/j.tplants.2019.06.004] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2019] [Revised: 06/05/2019] [Accepted: 06/06/2019] [Indexed: 05/12/2023]
Abstract
Mycorrhizal fungi considerably improve plant nutrition and help them to cope with changing environments. Particularly, these fungi express proteins to transfer inorganic phosphate (Pi) from the soil to colonized roots through symbiotic interfaces. The mechanisms involved in Pi transfer from fungal to plant cells are still largely unknown. Here, we discuss the recent progress made on the description of these mechanisms and we propose the most promising hypotheses and alternative mechanisms for this process. Specifically, we present a phylogenetic survey of candidate Pi transporters of mycorrhizal fungi that might ensure Pi unload into the symbiotic interfaces. Gathering additional knowledge on mycorrhizal Pi transport will improve the Pi-useefficiency in agroecological systems and will guide towards addressing future research challenges.
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Affiliation(s)
- Claude Plassard
- Eco&Sols, University Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
| | - Adeline Becquer
- Eco&Sols, University Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
| | - Kevin Garcia
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC27695-7619, USA.
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Effects of Ortho-Phosphate on Growth Performance, Welfare and Product Quality of Juvenile African Catfish (Clarias gariepinus). FISHES 2019. [DOI: 10.3390/fishes4010003] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Ortho-phosphate inside recirculation aquaculture systems is limited as a consequence of precipitation and regular water exchange rates. To improve plant growth in coupled aquaponics, phosphate fertilizer addition to hydroponics can increase PO43−-P concentrations inside the process water. We investigated the effects of four PO43−-P concentrations (<10 (P0), 40, 80, 120 mg L−1) in rearing water on growth performance, feed efficiency, and welfare traits of juvenile African catfish (Clarias gariepinus Burchell, 1822). By trend, optimum specific growth rate of 2.66% d−1 and feed conversion ratio of 0.71 were observed at 40 and 80 mg L−1 PO43−-P. Higher PO43−-P significantly affected skin coloration, swimming activity and external injuries, with the palest and inactive fish combined with most external injuries in the P120 group. Mineral and protein contents in the fish remained unaffected, while fat content inside the fillets enriched with increasing PO43−-P. Inorganic P in blood plasma increased significantly, while phosphate concentrations inside the fillet remained unchanged. We suggest that PO43−-P concentrations of 40 to 80 mg L−1 do not reduce the performance of African catfish aquaculture, while increased values of 120 mg L−1 affect fish welfare. This allows limited addition of PO43−-P fertilizer in coupled aquaponics with African catfish to support plant growth.
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Ezawa T, Saito K. How do arbuscular mycorrhizal fungi handle phosphate? New insight into fine-tuning of phosphate metabolism. THE NEW PHYTOLOGIST 2018; 220:1116-1121. [PMID: 29701874 DOI: 10.1111/nph.15187] [Citation(s) in RCA: 70] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Accepted: 03/22/2018] [Indexed: 05/09/2023]
Abstract
Contents Summary 1116 I. Introduction 1116 II. Foraging for phosphate 1117 III. Fine-tuning of phosphate homeostasis 1117 IV. The frontiers: phosphate translocation and export 1119 V. Conclusions and outlook 1120 Acknowledgements 1120 References 1120 SUMMARY: Arbuscular mycorrhizal fungi form symbiotic associations with most land plants and deliver mineral nutrients, in particular phosphate, to the host. Therefore, understanding the mechanisms of phosphate acquisition and delivery in the fungi is critical for full appreciation of the mutualism in this association. Here, we provide updates on physical, chemical, and biological strategies of the fungi for phosphate acquisition, including interactions with phosphate-solubilizing bacteria, and those on the regulatory mechanisms of phosphate homeostasis based on resurveys of published genome sequences and a transcriptome with reference to the latest findings in a model fungus. For the mechanisms underlying phosphate translocation and export to the host, which are major research frontiers in this field, not only recent advances but also testable hypotheses are proposed. Lastly, we briefly discuss applicability of the latest tools to gene silencing in the fungi, which will be breakthrough techniques for comprehensive understanding of the molecular basis of fungal phosphate metabolism.
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Affiliation(s)
- Tatsuhiro Ezawa
- Graduate School of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan
| | - Katsuharu Saito
- Faculty of Agriculture, Shinshu University, 8304 Minamiminowa, Nagano, 399-4598, Japan
- Research Center for Fungal and Microbial Dynamism, Shinshu University, 8304 Minamiminowa, Nagano, 399-4598, Japan
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Nehls U, Plassard C. Nitrogen and phosphate metabolism in ectomycorrhizas. THE NEW PHYTOLOGIST 2018; 220:1047-1058. [PMID: 29888395 DOI: 10.1111/nph.15257] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Accepted: 05/01/2018] [Indexed: 05/23/2023]
Abstract
1047 I. Introduction 1047 II. Mobilization of soil N/P by ECM fungi 1048 III. N/P uptake 1048 IV. N/P assimilation 1049 V. N/P storage and remobilization 1049 VI. Hyphal N/P efflux at the plant-fungus interface 1052 VII. Conclusion and research needs 1054 Acknowledgements 1055 References 1055 SUMMARY: Nutrient homeostasis is essential for fungal cells and thus tightly adapted to the local demand in a mycelium with hyphal specialization. Based on selected ectomycorrhizal (ECM) fungal models, we outlined current concepts of nitrogen and phosphate nutrition and their limitations, and included knowledge from Baker's yeast when major gaps had to be filled. We covered the entire pathway from nutrient mobilization, import and local storage, distribution within the mycelium and export at the plant-fungus interface. Even when nutrient import and assimilation were broad issues for ECM fungi, we focused mainly on nitrate and organic phosphorus uptake, as other nitrogen/phosphorus (N/P) sources have been covered by recent reviews. Vacuolar N/P storage and mobilization represented another focus point of this review. Vacuoles are integrated into cellular homeostasis and central for an ECM mycelium at two locations: soil-growing hyphae and hyphae of the plant-fungus interface. Vacuoles are also involved in long-distance transport. We further discussed potential mechanisms of bidirectional long-distance nutrient transport (distances from millimetres to metres). A final focus of the review was N/P export at the plant-fungus interface, where we compared potential efflux mechanisms and pathways, and discussed their prerequisites.
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Affiliation(s)
- Uwe Nehls
- Botany, University of Bremen, Bremen, 28359, Germany
| | - Claude Plassard
- Eco & Sols, Université de Montpellier, INRA, CIRAD, IRD, Montpellier SupAgro, Montpellier, 34060, France
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Becquer A, Garcia K, Amenc L, Rivard C, Doré J, Trives-Segura C, Szponarski W, Russet S, Baeza Y, Lassalle-Kaiser B, Gay G, Zimmermann SD, Plassard C. The Hebeloma cylindrosporum HcPT2 Pi transporter plays a key role in ectomycorrhizal symbiosis. THE NEW PHYTOLOGIST 2018; 220:1185-1199. [PMID: 29944179 DOI: 10.1111/nph.15281] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Accepted: 05/28/2018] [Indexed: 05/23/2023]
Abstract
Through a mutualistic relationship with woody plant roots, ectomycorrhizal fungi provide growth-limiting nutrients, including inorganic phosphate (Pi), to their host. Reciprocal trades occur at the Hartig net, which is the symbiotic interface of ectomycorrhizas where the two partners are symplasmically isolated. Fungal Pi must be exported to the symbiotic interface, but the proteins facilitating this transfer are unknown. In the present study, we combined transcriptomic, microscopy, whole plant physiology, X-ray fluorescence mapping, 32 P labeling and fungal genetic approaches to unravel the role of HcPT2, a fungal Pi transporter, during the Hebeloma cylindrosporum-Pinus pinaster ectomycorrhizal association. We localized HcPT2 in the extra-radical hyphae and the Hartig net and demonstrated its determinant role for both the establishment of ectomycorrhizas and Pi allocation towards P. pinaster. We showed that the host plant induces HcPT2 expression and that the artificial overexpression of HcPT2 is sufficient to significantly enhance Pi export towards the central cylinder. Together, our results reveal that HcPT2 plays an important role in ectomycorrhizal symbiosis, affecting both Pi influx in the mycelium and efflux towards roots under the control of P. pinaster.
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Affiliation(s)
- Adeline Becquer
- Eco & Sols, Université de Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34060, Montpellier, France
| | - Kevin Garcia
- Department of Biology and Microbiology, South Dakota State University, Brookings, SD, 57007, USA
- BPMP, Université de Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Laurie Amenc
- Eco & Sols, Université de Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34060, Montpellier, France
| | - Camille Rivard
- CEPIA, INRA, 44300, Nantes, France
- Synchrotron SOLEIL, 91190, Gif-sur-Yvette, France
| | - Jeanne Doré
- LEM, CNRS, INRA, VetAgro Sup, UCBL, Université de Lyon, 69622, Villeurbanne, France
| | - Carlos Trives-Segura
- Eco & Sols, Université de Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34060, Montpellier, France
| | - Wojciech Szponarski
- BPMP, Université de Montpellier, CNRS, INRA, SupAgro, 34060, Montpellier, France
| | - Sylvie Russet
- Eco & Sols, Université de Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34060, Montpellier, France
| | - Yoan Baeza
- Eco & Sols, Université de Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34060, Montpellier, France
| | | | - Gilles Gay
- LEM, CNRS, INRA, VetAgro Sup, UCBL, Université de Lyon, 69622, Villeurbanne, France
| | | | - Claude Plassard
- Eco & Sols, Université de Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, 34060, Montpellier, France
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Irshad U, Yergeau E. Bacterial Subspecies Variation and Nematode Grazing Change P Dynamics in the Wheat Rhizosphere. Front Microbiol 2018; 9:1990. [PMID: 30233510 PMCID: PMC6134019 DOI: 10.3389/fmicb.2018.01990] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Accepted: 08/07/2018] [Indexed: 12/24/2022] Open
Abstract
Low phosphorus soils are thought to constitute the majority of soils worldwide and cannot support intensive agriculture without high fertilizer inputs. Rhizobacteria are well-known to modify P dynamics and an increased bacterial diversity normally has a positive impact on various process rates. However, it is not known how variation in bacterial diversity at the subspecies level could influence trophic interactions in the rhizosphere and its consequences on plant P nutrition. We therefore hypothesized that the interactions between closely related P solubilizing bacteria and their grazing nematodes could improve plant P dynamics from an unavailable P source. We isolated four Pseudomonas poae strains and extracted nematodes from a Saskatchewan wheat field soil sample. The potential of all bacterial isolates with and without nematodes for increasing P availability in the wheat rhizosphere was tested in controlled microcosms with Ca3(PO4)2 as sole P source. Liberated P, phosphatase activity, plant P and bacterial abundance based on phnX gene copies were determined. Phosphorus solubilization efficiency of isolates varied between isolates whereas phosphatase enzyme activity was only detected under nematodes grazing and during the first 15 days of the experiment. Nematodes grazing upon individual Pseudomonas poae increased phosphatase enzyme activity, bacterial abundance, but decreased plant P concentration compared to non-grazed system. In contrast, the treatment combining all Pseudomonas poae isolates together with nematodes resulted in significant increases in P availability and plant P concentration. Diverse P-solubilizing efficiency and interaction with nematodes within the same bacterial "species" suggest that P dynamics might be linked to micro variation in soil diversity that would not accurately be picked up using common tools such as 16S rRNA gene sequencing.
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Affiliation(s)
- Usman Irshad
- Centre INRS-Institut Armand-Frappier, Institut National de la Recherche Scientifique, Université du Québec, Laval, QC, Canada.,Department of Environmental Sciences, COMSATS University Islamabad, Abbottabad, Pakistan
| | - Etienne Yergeau
- Centre INRS-Institut Armand-Frappier, Institut National de la Recherche Scientifique, Université du Québec, Laval, QC, Canada
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Liu Y, Sun Q, Li J, Lian B. Bacterial diversity among the fruit bodies of ectomycorrhizal and saprophytic fungi and their corresponding hyphosphere soils. Sci Rep 2018; 8:11672. [PMID: 30076360 PMCID: PMC6076286 DOI: 10.1038/s41598-018-30120-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 07/24/2018] [Indexed: 11/08/2022] Open
Abstract
Macro-fungi play important roles in the soil elemental cycle in terrestrial ecosystems. Many researchers have focused on the interactions between mycorrhizal fungi and host plants, whilst comparatively few studies aim to characterise the relationships between macro-fungi and bacteria in situ. In this study, we detected endophytic bacteria within fruit bodies of ectomycorrhizal and saprophytic fungi (SAF) using high-throughput sequencing technology, as well as bacterial diversity in the corresponding hyphosphere soils below the fruit bodies. Bacteria such as Helicobacter, Escherichia-Shigella, and Bacillus were found to dominate within fruit bodies, indicating that they were crucial in the development of macro-fungi. The bacterial richness in the hyphosphere soils of ectomycorrhizal fungi (EcMF) was higher than that of SAF and significant difference in the composition of bacterial communities was observed. There were more Verrucomicrobia and Bacteroides in the hyphosphere soils of EcMF, and comparatively more Actinobacteria and Chloroflexi in the hyphosphere of SAF. The results indicated that the two types of macro-fungi can enrich, and shape the bacteria compatible with their respective ecological functions. This study will be beneficial to the further understanding of interactions between macro-fungi and relevant bacteria.
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Affiliation(s)
- Yaping Liu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Qibiao Sun
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Jing Li
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China
| | - Bin Lian
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China.
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Zavišić A, Yang N, Marhan S, Kandeler E, Polle A. Forest Soil Phosphorus Resources and Fertilization Affect Ectomycorrhizal Community Composition, Beech P Uptake Efficiency, and Photosynthesis. FRONTIERS IN PLANT SCIENCE 2018; 9:463. [PMID: 29706979 PMCID: PMC5908982 DOI: 10.3389/fpls.2018.00463] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2017] [Accepted: 03/23/2018] [Indexed: 05/27/2023]
Abstract
Phosphorus (P) is an important nutrient, whose plant-available form phosphate is often low in natural forest ecosystems. Mycorrhizal fungi mine the soil for P and supply their host with this resource. It is unknown how ectomycorrhizal communities respond to changes in P availability. Here, we used young beech (Fagus sylvatica L.) trees in natural forest soil from a P-rich and P-poor site to investigate the impact of P amendment on soil microbes, mycorrhizas, beech P nutrition, and photosynthesis. We hypothesized that addition of P to forest soil increased P availability, thereby, leading to enhanced microbial biomass and mycorrhizal diversity in P-poor but not in P-rich soil. We expected that P amendment resulted in increased plant P uptake and enhanced photosynthesis in both soil types. Young beech trees with intact soil cores from a P-rich and a P-poor forest were kept in a common garden experiment and supplied once in fall with triple superphosphate. In the following summer, labile P in the organic layer, but not in the mineral top soil, was significantly increased in response to fertilizer treatment. P-rich soil contained higher microbial biomass than P-poor soil. P treatment had no effect on microbial biomass but influenced the mycorrhizal communities in P-poor soil and shifted their composition toward higher similarities to those in P-rich soil. Plant uptake efficiency was negatively correlated with the diversity of mycorrhizal communities and highest for trees in P-poor soil and lowest for fertilized trees. In both soil types, radioactive P tracing (H333PO4) revealed preferential aboveground allocation of new P in fertilized trees, resulting in increased bound P in xylem tissue and enhanced soluble P in bark, indicating increased storage and transport. Fertilized beeches from P-poor soil showed a strong increase in leaf P concentrations from deficient to luxurious conditions along with increased photosynthesis. Based on the divergent behavior of beech in P-poor and P-rich forest soil, we conclude that acclimation of beech to low P stocks involves dedicated mycorrhizal community structures, low P reserves in storage tissues and photosynthetic inhibition, while storage and aboveground allocation of additional P occurs regardless of the P nutritional status.
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Affiliation(s)
- Aljosa Zavišić
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
| | - Nan Yang
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
| | - Sven Marhan
- Institute of Soil Science and Land Evaluation, Soil Biology, University of Hohenheim, Stuttgart, Germany
| | - Ellen Kandeler
- Institute of Soil Science and Land Evaluation, Soil Biology, University of Hohenheim, Stuttgart, Germany
| | - Andrea Polle
- Forest Botany and Tree Physiology, University of Göttingen, Göttingen, Germany
- Laboratory for Radio-Isotopes, University of Göttingen, Göttingen, Germany
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Becquer A, Garcia K, Plassard C. HcPT1.2 participates in Pi acquisition in Hebeloma cylindrosporum external hyphae of ectomycorrhizas under high and low phosphate conditions. PLANT SIGNALING & BEHAVIOR 2018; 13:e1525997. [PMID: 30289375 PMCID: PMC6204789 DOI: 10.1080/15592324.2018.1525997] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Ectomycorrhizal fungi improve tree phosphorus nutrition through transporters specifically localized at soil-hyphae and symbiotic interfaces. In the model symbiosis between the fungus Hebeloma cylindrosporum and the maritime pine (Pinus pinaster), several transporters possibly involved in phosphate fluxes were identified, including three H+:Pi transporters. Among these three, we recently unraveled the function of one of them, named HcPT2, in both pure culture and symbiotic interaction with P. pinaster. Here we investigated the transporter named HcPT1.2, by analyzing inorganic phosphate transport ability in a yeast complementation assay, assessing its expression in the fungus associated or not with the plant, and immunolocalizing the proteins in ectomycorrhizas. We also evaluated the effect of external Pi concentration on expression and localization of HcPT1.2. Our results revealed that HcPT1.2 is involved in Pi acquisition by H. cylindrosporum mycelium, irrespective of the external Pi concentrations.
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Affiliation(s)
- Adeline Becquer
- Eco&Sols, University Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
| | - Kevin Garcia
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, USA
- CONTACT Kevin Garcia Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC 27695-7619, USA
| | - Claude Plassard
- Eco&Sols, University Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
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Doré J, Kohler A, Dubost A, Hundley H, Singan V, Peng Y, Kuo A, Grigoriev IV, Martin F, Marmeisse R, Gay G. The ectomycorrhizal basidiomyceteHebeloma cylindrosporumundergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environ Microbiol 2017; 19:1338-1354. [DOI: 10.1111/1462-2920.13670] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Revised: 01/03/2017] [Accepted: 01/04/2017] [Indexed: 01/10/2023]
Affiliation(s)
- Jeanne Doré
- Ecologie Microbienne; Université de Lyon; F-69622 Lyon France
- Université Lyon 1, CNRS, UMR5557, INRA, UMR1418; Villeurbanne France
| | - Annegret Kohler
- Interactions Arbres/Microorganismes, INRA-Nancy; INRA, UMR 1136 INRA-Université de Lorraine; Champenoux 54280 France
| | - Audrey Dubost
- Ecologie Microbienne; Université de Lyon; F-69622 Lyon France
- Université Lyon 1, CNRS, UMR5557, INRA, UMR1418; Villeurbanne France
| | - Hope Hundley
- U.S. Department of Energy Joint Genome Institute; Walnut Creek CA 94598 USA
| | - Vasanth Singan
- U.S. Department of Energy Joint Genome Institute; Walnut Creek CA 94598 USA
| | - Yi Peng
- U.S. Department of Energy Joint Genome Institute; Walnut Creek CA 94598 USA
| | - Alan Kuo
- U.S. Department of Energy Joint Genome Institute; Walnut Creek CA 94598 USA
| | - Igor V. Grigoriev
- U.S. Department of Energy Joint Genome Institute; Walnut Creek CA 94598 USA
| | - Francis Martin
- Interactions Arbres/Microorganismes, INRA-Nancy; INRA, UMR 1136 INRA-Université de Lorraine; Champenoux 54280 France
| | - Roland Marmeisse
- Ecologie Microbienne; Université de Lyon; F-69622 Lyon France
- Université Lyon 1, CNRS, UMR5557, INRA, UMR1418; Villeurbanne France
| | - Gilles Gay
- Ecologie Microbienne; Université de Lyon; F-69622 Lyon France
- Université Lyon 1, CNRS, UMR5557, INRA, UMR1418; Villeurbanne France
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Rentería-Chávez MC, Pérez-Moreno J, Cetina-Alcalá VM, Ferrera-Cerrato R, Xoconostle-Cázares B. Transferencia de nutrientes y crecimiento de Pinus greggii Engelm. inoculado con hongos comestibles ectomicorrícicos en dos sustratos. Rev Argent Microbiol 2017; 49:93-104. [DOI: 10.1016/j.ram.2016.06.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2015] [Revised: 05/18/2016] [Accepted: 06/28/2016] [Indexed: 11/29/2022] Open
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Garcia K, Doidy J, Zimmermann SD, Wipf D, Courty PE. Take a Trip Through the Plant and Fungal Transportome of Mycorrhiza. TRENDS IN PLANT SCIENCE 2016; 21:937-950. [PMID: 27514454 DOI: 10.1016/j.tplants.2016.07.010] [Citation(s) in RCA: 107] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Revised: 07/18/2016] [Accepted: 07/25/2016] [Indexed: 05/21/2023]
Abstract
Soil nutrient acquisition and exchanges through symbiotic plant-fungus interactions in the rhizosphere are key features for the current agricultural and environmental challenges. Improved crop yield and plant mineral nutrition through a fungal symbiont has been widely described. In return, the host plant supplies carbon substrates to its fungal partner. We review here recent progress on molecular players of membrane transport involved in nutritional exchanges between mycorrhizal plants and fungi. We cover the transportome, from the transport proteins involved in sugar fluxes from plants towards fungi, to the uptake from the soil and exchange of nitrogen, phosphate, potassium, sulfate, and water. Together, these advances in the comprehension of the mycorrhizal transportome will help in developing the future engineering of new agro-ecological systems.
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Affiliation(s)
- Kevin Garcia
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Joan Doidy
- Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA
| | - Sabine D Zimmermann
- Biochimie et Physiologie Moléculaire des Plantes, Centre National de la Recherche Scientifique (CNRS), Institut National de la Recherche Agronomique (INRA), Montpellier SupAgro, Université de Montpellier, 34060 Montpellier, France
| | - Daniel Wipf
- Agroécologie, AgroSup Dijon, CNRS, INRA, Université de Bourgogne Franche-Comté, 21000 Dijon, France
| | - Pierre-Emmanuel Courty
- University of Fribourg, Department of Biology, 3 rue Albert Gockel, 1700 Fribourg, Switzerland.
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Cerozi BDS, Fitzsimmons K. The effect of pH on phosphorus availability and speciation in an aquaponics nutrient solution. BIORESOURCE TECHNOLOGY 2016; 219:778-781. [PMID: 27575336 DOI: 10.1016/j.biortech.2016.08.079] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2016] [Revised: 08/19/2016] [Accepted: 08/21/2016] [Indexed: 05/22/2023]
Abstract
The interaction between the main ions in aquaponics nutrient solutions affects chemical composition and availability of nutrients, and nutrient uptake by plant roots. This study determined the effect of pH on phosphorus (P) speciation and availability in an aquaponics nutrient solution and used Visual MINTEQ to simulate P species and P activity. In both experimental and simulated results, P availability decreased with increase in pH of aquaponics nutrient solutions. According to simulations, P binds to several cations leaving less free phosphate ions available in solution. High pH values resulted in the formation of insoluble calcium phosphate species. The study also demonstrated the importance of organic matter and alkalinity in keeping free phosphate ions in solution at high pH ranges. It is recommended though that pH in aquaponics systems is maintained at a 5.5-7.2 range for optimal availability and uptake by plants.
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Affiliation(s)
- Brunno da Silva Cerozi
- Department of Soil Water and Environmental Science, The University of Arizona, P.O. Box 210038, Tucson, AZ 85721-0038, United States.
| | - Kevin Fitzsimmons
- Department of Soil Water and Environmental Science, The University of Arizona, P.O. Box 210038, Tucson, AZ 85721-0038, United States
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Martin F, Kohler A, Murat C, Veneault-Fourrey C, Hibbett DS. Unearthing the roots of ectomycorrhizal symbioses. Nat Rev Microbiol 2016; 14:760-773. [PMID: 27795567 DOI: 10.1038/nrmicro.2016.149] [Citation(s) in RCA: 190] [Impact Index Per Article: 23.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
During the diversification of Fungi and the rise of conifer-dominated and angiosperm- dominated forests, mutualistic symbioses developed between certain trees and ectomycorrhizal fungi that enabled these trees to colonize boreal and temperate regions. The evolutionary success of these symbioses is evident from phylogenomic analyses that suggest that ectomycorrhizal fungi have arisen in approximately 60 independent saprotrophic lineages, which has led to the wide range of ectomycorrhizal associations that exist today. In this Review, we discuss recent genomic studies that have revealed the adaptations that seem to be fundamental to the convergent evolution of ectomycorrhizal fungi, including the loss of some metabolic functions and the acquisition of effectors that facilitate mutualistic interactions with host plants. Finally, we consider how these insights can be integrated into a model of the development of ectomycorrhizal symbioses.
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Affiliation(s)
- Francis Martin
- Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d'excellence Recherches Avancés sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Lorraine, 54280 Champenoux, France
| | - Annegret Kohler
- Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d'excellence Recherches Avancés sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Lorraine, 54280 Champenoux, France
| | - Claude Murat
- Institut national de la recherche agronomique (INRA), Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d'excellence Recherches Avancés sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Lorraine, 54280 Champenoux, France
| | - Claire Veneault-Fourrey
- Université de Lorraine, Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d'excellence Recherches Avancées sur la Biologie de l'Arbre et les Ecosystèmes Forestiers (ARBRE), 54500 Vandoeuvre-lès-Nancy, France
| | - David S Hibbett
- Biology Department, Clark University, Lasry Center for Bioscience, 950 Main Street, Worcester, Massachusetts 01610, USA
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Gill SS, Gill R, Trivedi DK, Anjum NA, Sharma KK, Ansari MW, Ansari AA, Johri AK, Prasad R, Pereira E, Varma A, Tuteja N. Piriformospora indica: Potential and Significance in Plant Stress Tolerance. Front Microbiol 2016; 7:332. [PMID: 27047458 PMCID: PMC4801890 DOI: 10.3389/fmicb.2016.00332] [Citation(s) in RCA: 120] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2016] [Accepted: 02/03/2016] [Indexed: 11/17/2022] Open
Abstract
Owing to its exceptional ability to efficiently promote plant growth, protection and stress tolerance, a mycorrhiza like endophytic Agaricomycetes fungus Piriformospora indica has received a great attention over the last few decades. P. indica is an axenically cultiviable fungus which exhibits its versatility for colonizing/hosting a broad range of plant species through directly manipulating plant hormone-signaling pathway during the course of mutualism. P. indica-root colonization leads to a better plant performance in all respect, including enhanced root proliferation by indole-3-acetic acid production which in turn results into better nutrient-acquisition and subsequently to improved crop growth and productivity. Additionally, P. indica can induce both local and systemic resistance to fungal and viral plant diseases through signal transduction. P. indica-mediated stimulation in antioxidant defense system components and expressing stress-related genes can confer crop/plant stress tolerance. Therefore, P. indica can biotize micropropagated plantlets and also help these plants to overcome transplantation shock. Nevertheless, it can also be involved in a more complex symbiotic relationship, such as tripartite symbiosis and can enhance population dynamic of plant growth promoting rhizobacteria. In brief, P. indica can be utilized as a plant promoter, bio-fertilizer, bioprotector, bioregulator, and biotization agent. The outcome of the recent literature appraised herein will help us to understand the physiological and molecular bases of mechanisms underlying P. indica-crop plant mutual relationship. Together, the discussion will be functional to comprehend the usefulness of crop plant-P. indica association in both achieving new insights into crop protection/improvement as well as in sustainable agriculture production.
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Affiliation(s)
- Sarvajeet S Gill
- Stress Physiology and Molecular Biology Laboratory, Centre for Biotechnology, Maharshi Dayanand University Rohtak, India
| | - Ritu Gill
- Stress Physiology and Molecular Biology Laboratory, Centre for Biotechnology, Maharshi Dayanand University Rohtak, India
| | - Dipesh K Trivedi
- Plant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology New Delhi, India
| | - Naser A Anjum
- Centre for Environmental and Marine Studies and Department of Chemistry, University of Aveiro Aveiro, Portugal
| | - Krishna K Sharma
- Department of Microbiology, Maharshi Dayanand University Rohtak, India
| | - Mohammed W Ansari
- Plant Molecular Biology Group, International Centre for Genetic Engineering and Biotechnology New Delhi, India
| | - Abid A Ansari
- Department of Biology, University of Tabuk Tabuk, Saudi Arabia
| | - Atul K Johri
- School of Life Sciences, Jawaharlal Nehru University New Delhi, India
| | - Ram Prasad
- Amity Institute of Microbial Technology, Amity University Noida, India
| | - Eduarda Pereira
- Centre for Environmental and Marine Studies and Department of Chemistry, University of Aveiro Aveiro, Portugal
| | - Ajit Varma
- Amity Institute of Microbial Technology, Amity University Noida, India
| | - Narendra Tuteja
- Amity Institute of Microbial Technology, Amity University Noida, India
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Wang F, Shi N, Jiang R, Zhang F, Feng G. In situ stable isotope probing of phosphate-solubilizing bacteria in the hyphosphere. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:1689-701. [PMID: 26802172 PMCID: PMC4783358 DOI: 10.1093/jxb/erv561] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
This study used a [(13)C]DNA stable isotope probing (SIP) technique to elucidate a direct pathway for the translocation of (13)C-labeled photoassimilate from maize plants to extraradical mycelium-associated phosphate-solubilizing bacteria (PSB) that mediate the mineralization and turnover of soil organic phosphorus (P) in the hyphosphere. Inoculation with PSB alone did not provide any benefit to maize plants but utilized the added phytate-P to their own advantage, while inoculation with Rhizophagus irregularis alone significantly promoted shoot biomass and P content compared with the control. However, compared with both sole inoculation treatments, combined inoculation with PSB and R. irregularis in the hyphosphere enhanced organic P mineralization and increased microbial biomass P in the soil. There was no extra benefit to plant P uptake but the hyphal growth of R. irregularis was reduced, suggesting that PSB benefited from the arbuscular mycorrhizal (AM) fungal mycelium and competed for soil P with the fungus. The combination of T-RFLP (terminal restriction fragment length polymorphism) analysis with a clone library revealed that one of the bacteria that actively assimilated carbon derived from pulse-labeled maize plants was Pseudomonas alcaligenes (Pseudomonadaceae) that was initially inoculated into the hyphosphere soil. These results provide the first in situ demonstration of the pathway underlying the carbon flux from plants to the AM mycelium-associated PSB, and the PSB assimilated the photosynthates exuded by the fungus and promoted mineralization and turnover of organic P in the soil.
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Affiliation(s)
- Fei Wang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Ning Shi
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Rongfeng Jiang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Fusuo Zhang
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
| | - Gu Feng
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, PR China
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40
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Rosling A, Midgley MG, Cheeke T, Urbina H, Fransson P, Phillips RP. Phosphorus cycling in deciduous forest soil differs between stands dominated by ecto- and arbuscular mycorrhizal trees. THE NEW PHYTOLOGIST 2016; 209:1184-1195. [PMID: 26510093 DOI: 10.1111/nph.13720] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2015] [Accepted: 09/16/2015] [Indexed: 06/05/2023]
Abstract
Although much is known about how trees and their associated microbes influence nitrogen cycling in temperate forest soils, less is known about biotic controls over phosphorus (P) cycling. Given that mycorrhizal fungi are instrumental for P acquisition and that the two dominant associations - arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi - possess different strategies for acquiring P, we hypothesized that P cycling would differ in stands dominated by trees associated with AM vs ECM fungi. We quantified soil solution P, microbial biomass P, and sequentially extracted inorganic and organic P pools from May to November in plots dominated by trees forming either AM or ECM associations in south-central Indiana, USA. Overall, fungal communities in AM and ECM plots were functionally different and soils exhibited fundamental differences in P cycling. Organic forms of P were more available in ECM plots than in AM plots. Yet inorganic P decreased and organic P accumulated over the growing season in both ECM and AM plots, resulting in increasingly P-limited microbial biomass. Collectively, our results suggest that P cycling in hardwood forests is strongly influenced by biotic processes in soil and that these are driven by plant-associated fungal communities.
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Affiliation(s)
- Anna Rosling
- Department of Evolutionary Biology, EBC, Uppsala University, Uppsala, Sweden
| | - Meghan G Midgley
- Biology Department, Indiana University, Bloomington, IN, 47405, USA
| | - Tanya Cheeke
- Biology Department, Indiana University, Bloomington, IN, 47405, USA
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Hector Urbina
- Department of Evolutionary Biology, EBC, Uppsala University, Uppsala, Sweden
| | - Petra Fransson
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden
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41
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Giles CD, Hsu PCL, Richardson AE, Hurst MRH, Hill JE. The role of gluconate production by Pseudomonas spp. in the mineralization and bioavailability of calcium-phytate to Nicotiana tabacum. Can J Microbiol 2015; 61:885-97. [PMID: 26435508 DOI: 10.1139/cjm-2015-0206] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2023]
Abstract
Organic phosphorus (P) is abundant in most soils but is largely unavailable to plants. Pseudomonas spp. can improve the availability of P to plants through the production of phytases and organic anions. Gluconate is a major component of Pseudomonas organic anion production and may therefore play an important role in the mineralization of insoluble organic P forms such as calcium-phytate (CaIHP). Organic anion and phytase production was characterized in 2 Pseudomonas spp. soil isolates (CCAR59, Ha200) and an isogenic mutant of strain Ha200, which lacked a functional glucose dehydrogenase (Gcd) gene (strain Ha200 gcd::Tn5B8). Wild-type and mutant strains of Pseudomonas spp. were evaluated for their ability to solubilize and hydrolyze CaIHP and to promote the growth and assimilation of P by tobacco plants. Gluconate, 2-keto-gluconate, pyruvate, ascorbate, acetate, and formate were detected in Pseudomonas spp. supernatants. Wild-type pseudomonads containing a functional gcd could produce gluconate and mineralize CaIHP, whereas the isogenic mutant could not. Inoculation with Pseudomonas improved the bioavailability of CaIHP to tobacco plants, but there was no difference in plant growth response due to Gcd function. Gcd function is required for the mineralization of CaIHP in vitro; however, further studies will be needed to quantify the relative contribution of specific organic anions such as gluconate to plant growth promotion by soil pseudomonads.
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Affiliation(s)
- Courtney D Giles
- a The James Hutton Institute, Invergowrie, Dundee, Scotland, DD2 5DA, UK
| | - Pei-Chun Lisa Hsu
- b AgResearch Lincoln, Innovative Farm Systems, Christchurch 8140, New Zealand
| | | | - Mark R H Hurst
- b AgResearch Lincoln, Innovative Farm Systems, Christchurch 8140, New Zealand
| | - Jane E Hill
- d Dartmouth College, Thayer School of Engineering, Hanover, NH 037553, USA
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Baker A, Ceasar SA, Palmer AJ, Paterson JB, Qi W, Muench SP, Baldwin SA. Replace, reuse, recycle: improving the sustainable use of phosphorus by plants. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:3523-40. [PMID: 25944926 DOI: 10.1093/jxb/erv210] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The 'phosphorus problem' has recently received strong interest with two distinct strands of importance. The first is that too much phosphorus (P) is entering into waste water, creating a significant economic and ecological problem. Secondly, while agricultural demand for phosphate fertilizer is increasing to maintain crop yields, rock phosphate reserves are rapidly declining. Unravelling the mechanisms by which plants sense, respond to, and acquire phosphate can address both problems, allowing the development of crop plants that are more efficient at acquiring and using limited amounts of phosphate while at the same time improving the potential of plants and other photosynthetic organisms for nutrient recapture and recycling from waste water. In this review, we attempt to synthesize these important but often disparate parts of the debate in a holistic fashion, since solutions to such a complex problem require integrated and multidisciplinary approaches that address both P supply and demand. Rapid progress has been made recently in our understanding of local and systemic signalling mechanisms for phosphate, and of expression and regulation of membrane proteins that take phosphate up from the environment and transport it within the plant. We discuss the current state of understanding of such mechanisms involved in sensing and responding to phosphate stress. We also discuss approaches to improve the P-use efficiency of crop plants and future direction for sustainable use of P, including use of photosynthetic organisms for recapture of P from waste waters.
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Affiliation(s)
- Alison Baker
- Centre for Plant Sciences and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - S Antony Ceasar
- Centre for Plant Sciences and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK Division of Plant Biotechnology, Entomology Research Institute, Loyola College, Chennai 600034, India
| | - Antony J Palmer
- Centre for Plant Sciences and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Jaimie B Paterson
- Centre for Plant Sciences and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK School of Civil Engineering, Faculty of Engineering, University of Leeds, Leeds LS2 9JT, UK
| | - Wanjun Qi
- Centre for Plant Sciences and School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Stephen P Muench
- School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
| | - Stephen A Baldwin
- School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK
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