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Gill AS, Wolyn DJ. Transcriptomic analysis of Asparagus officinalis cultivars with varying levels of freezing tolerance over fall acclimation and spring deacclimation periods. FRONTIERS IN PLANT SCIENCE 2024; 15:1442784. [PMID: 39220003 PMCID: PMC11361922 DOI: 10.3389/fpls.2024.1442784] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2024] [Accepted: 07/16/2024] [Indexed: 09/04/2024]
Abstract
Asparagus (Asparagus officinalis L.) is an important vegetable crop in southern Ontario, Canada, where winter air and soil temperatures below 0°C are common. Consequently, cultivars growing in this area must possess winterhardiness and freezing tolerance for survival. Asparagus acquires freezing tolerance in the fall through cold acclimation and loses freezing tolerance in the spring through deacclimation. To understand the molecular bases of these processes, transcriptomic analysis (RNA-Seq) was conducted on two cultivars, one adapted, 'Guelph Millennium' (GM), and one unadapted, 'UC157' (UC), to the winter conditions of southern Ontario. RNA extracted from bud and rhizome tissues, sampled on three dates during early spring and late fall, was subjected to sequencing. In the fall, the numbers of differentially expressed (DE) genes at the second and third harvests increased, relative to the first harvest, in dormant buds and rhizomes as freezing tolerance of cultivars increased, and the majority of DE genes were downregulated. In spring, freezing tolerance decreased as plants deacclimated and most genes DE at second and third harvests were upregulated in both cultivars. GM had lower LT50 (lethal temperature at which 50% of plants die) values and hence higher freezing tolerance than UC on specific sampling dates during both spring and fall, and expression patterns of specific genes were correlated with LT50 differences. Functional analysis revealed that these genes were involved in carbohydrate metabolic process, plant hormone signal transduction (auxin and gibberellin), proline metabolism, biosynthesis of secondary metabolites, circadian rhythm, and late embryogenesis abundant proteins and could be associated with cold acclimation and deacclimation processes. These findings will help researchers understand the molecular mechanisms of freezing tolerance in asparagus, leading to breeding and genetic strategies to improve the trait.
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Affiliation(s)
| | - David J. Wolyn
- Department of Plant Agriculture, University of Guelph, Guelph, ON, Canada
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Gutschker S, Ruescher D, Rabbi IY, Rosado-Souza L, Pommerrenig B, Pauly M, Robertz S, van Doorn AM, Schlereth A, Neuhaus HE, Fernie AR, Reinert S, Sonnewald U, Zierer W. Carbon usage in yellow-fleshed Manihot esculenta storage roots shifts from starch biosynthesis to cell wall and raffinose biosynthesis via the myo-inositol pathway. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 119:2045-2062. [PMID: 38961707 DOI: 10.1111/tpj.16909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 06/17/2024] [Accepted: 06/20/2024] [Indexed: 07/05/2024]
Abstract
Cassava is a crucial staple crop for smallholder farmers in tropical Asia and Sub-Saharan Africa. Although high yield remains the top priority for farmers, the significance of nutritional values has increased in cassava breeding programs. A notable negative correlation between provitamin A and starch accumulation poses a significant challenge for breeding efforts. The negative correlation between starch and carotenoid levels in conventional and genetically modified cassava plants implies the absence of a direct genomic connection between the two traits. The competition among various carbon pathways seems to account for this relationship. In this study, we conducted a thorough analysis of 49 African cassava genotypes with varying levels of starch and provitamin A. Our goal was to identify factors contributing to differential starch accumulation. Considering carotenoid levels as a confounding factor in starch production, we found that yellow- and white-fleshed storage roots did not differ significantly in most measured components of starch or de novo fatty acid biosynthesis. However, genes and metabolites associated with myo-inositol synthesis and cell wall polymer production were substantially enriched in high provitamin A genotypes. These results indicate that yellow-fleshed cultivars, in comparison to their white-fleshed counterparts, direct more carbon toward the synthesis of raffinose and cell wall components. This finding is underlined by a significant rise in cell wall components measured within the 20 most contrasting genotypes for carotenoid levels. Our findings enhance the comprehension of the biosynthesis of starch and carotenoids in the storage roots of cassava.
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Affiliation(s)
- Sindy Gutschker
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - David Ruescher
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - Ismail Y Rabbi
- International Institute of Tropical Agriculture, Ibadan, Nigeria
| | | | | | - Markus Pauly
- Heinrich-Heine-University, Institute of Plant Cell Biology and Biotechnology, Düsseldorf, Germany
| | - Stefan Robertz
- Heinrich-Heine-University, Institute of Plant Cell Biology and Biotechnology, Düsseldorf, Germany
| | - Anna M van Doorn
- International Institute of Tropical Agriculture, Ibadan, Nigeria
| | - Armin Schlereth
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | | | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Potsdam, Germany
| | - Stephan Reinert
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - Uwe Sonnewald
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - Wolfgang Zierer
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
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Jaśkiewicz A, Kunicka-Styczyńska A, Baryga A, Gruska RM, Brzeziński S, Świącik B. Evaluation of the Impact of an Enzymatic Preparation Catalyzing the Decomposition of Raffinose from Poor-Quality Beets during the White Sugar Production Process. Molecules 2024; 29:3526. [PMID: 39124931 PMCID: PMC11314104 DOI: 10.3390/molecules29153526] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 07/15/2024] [Accepted: 07/25/2024] [Indexed: 08/12/2024] Open
Abstract
The study investigates the efficacy of an enzymatic preparation primarily with α-galactosidase activity for improving the quality of white sugar from poor-quality sugar beets. Focused on overcoming raffinose accumulation challenges in sugar beets, especially those harvested prematurely or stored for extended periods, an innovative exploration of enzymatic application in an industrial setting for the first time was conducted. By integrating theoretical calculations and experimental data, the findings reveal that α-galactosidase preparation notably diminishes raffinose content in beet juice, thus enhancing the sucrose yield and overall sugar quality. A reliable method to process lower-quality beets, promising enhanced efficiency in sugar production, was presented. The study also highlights the economic benefits of incorporating enzyme preparation into the production process, demonstrating a notable return on investment and underscoring the potential of enzymatic treatments to address industry challenges.
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Affiliation(s)
| | - Alina Kunicka-Styczyńska
- Department of Sugar Industry and Food Safety Management, Faculty of Biotechnology and Food Sciences, Lodz University of Technology, Wólczańska 171/173, 90-530 Lodz, Poland; (A.J.); (A.B.); (R.M.G.); (S.B.); (B.Ś.)
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Valifard M, Khan A, Berg J, Le Hir R, Pommerrenig B, Neuhaus HE, Keller I. Carbohydrate distribution via SWEET17 is critical for Arabidopsis inflorescence branching under drought. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:3903-3919. [PMID: 38530289 DOI: 10.1093/jxb/erae135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 03/25/2024] [Indexed: 03/27/2024]
Abstract
Sugars Will Eventually be Exported Transporters (SWEETs) are the most recently discovered family of plant sugar transporters. By acting as uniporters, SWEETs facilitate the diffusion of sugars across cell membranes and play an important role in various physiological processes such as abiotic stress adaptation. AtSWEET17, a vacuolar fructose facilitator, was shown to be involved in the modulation of the root system during drought. In addition, previous studies have shown that overexpression of an apple homolog leads to increased drought tolerance in tomato plants. Therefore, SWEET17 might be a molecular element involved in plant responses to drought. However, the role and function of SWEET17 in above-ground tissues of Arabidopsis under drought stress remain elusive. By combining gene expression analysis and stem architecture with the sugar profiles of different above-ground tissues, we uncovered a putative role for SWEET17 in carbohydrate supply and thus cauline branch elongation, especially during periods of carbon limitation, as occurs under drought stress. Thus, SWEET17 seems to be involved in maintaining efficient plant reproduction under drought stress conditions.
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Affiliation(s)
- Marzieh Valifard
- Department Plant Physiology, University of Kaiserslautern, D-67663 Kaiserslautern, Germany
| | - Azkia Khan
- Department Plant Physiology, University of Kaiserslautern, D-67663 Kaiserslautern, Germany
| | - Johannes Berg
- Department Plant Physiology, University of Kaiserslautern, D-67663 Kaiserslautern, Germany
| | - Rozenn Le Hir
- Université Paris-Saclay, INRAE, AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), 78000, Versailles, France
| | - Benjamin Pommerrenig
- Department Plant Physiology, University of Kaiserslautern, D-67663 Kaiserslautern, Germany
| | - H Ekkehard Neuhaus
- Department Plant Physiology, University of Kaiserslautern, D-67663 Kaiserslautern, Germany
| | - Isabel Keller
- Department Plant Physiology, University of Kaiserslautern, D-67663 Kaiserslautern, Germany
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Fechete LI, Larking AC, Heslop A, Hannaford R, Anderson CB, Hong W, Prakash S, Mace W, Alikhani S, Hofmann RW, Tausen M, Schierup MH, Andersen SU, Griffiths AG. Harnessing cold adaptation for postglacial colonisation: Galactinol synthase expression and raffinose accumulation in a polyploid and its progenitors. PLANT, CELL & ENVIRONMENT 2024. [PMID: 38873953 DOI: 10.1111/pce.15009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 03/20/2024] [Accepted: 06/06/2024] [Indexed: 06/15/2024]
Abstract
Allotetraploid white clover (Trifolium repens) formed during the last glaciation through hybridisation of two European diploid progenitors from restricted niches: one coastal, the other alpine. Here, we examine which hybridisation-derived molecular events may have underpinned white clover's postglacial niche expansion. We compared the transcriptomic frost responses of white clovers (an inbred line and an alpine-adapted ecotype), extant descendants of its progenitor species and a resynthesised white clover neopolyploid to identify genes that were exclusively frost-induced in the alpine progenitor and its derived subgenomes. From these analyses we identified galactinol synthase, the rate-limiting enzyme in biosynthesis of the cryoprotectant raffinose, and found that the extant descendants of the alpine progenitor as well as the neopolyploid white clover rapidly accumulated significantly more galactinol and raffinose than the coastal progenitor under cold stress. The frost-induced galactinol synthase expression and rapid raffinose accumulation derived from the alpine progenitor likely provided an advantage during early postglacial colonisation for white clover compared to its coastal progenitor.
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Affiliation(s)
| | - Anna C Larking
- Grasslands Research Centre, AgResearch Grasslands, Palmerston North, New Zealand
| | - Angus Heslop
- Research Centre, AgResearch Lincoln, Lincoln, New Zealand
| | - Rina Hannaford
- Grasslands Research Centre, AgResearch Grasslands, Palmerston North, New Zealand
| | - Craig B Anderson
- Grasslands Research Centre, AgResearch Grasslands, Palmerston North, New Zealand
| | - Won Hong
- Grasslands Research Centre, AgResearch Grasslands, Palmerston North, New Zealand
| | - Sushma Prakash
- Grasslands Research Centre, AgResearch Grasslands, Palmerston North, New Zealand
| | - Wade Mace
- Grasslands Research Centre, AgResearch Grasslands, Palmerston North, New Zealand
| | - Salome Alikhani
- Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, New Zealand
| | - Rainer W Hofmann
- Faculty of Agriculture and Life Sciences, Lincoln University, Lincoln, New Zealand
| | - Marni Tausen
- Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark
| | | | | | - Andrew G Griffiths
- Grasslands Research Centre, AgResearch Grasslands, Palmerston North, New Zealand
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Reyer A, Bazihizina N, Jaślan J, Scherzer S, Schäfer N, Jaślan D, Becker D, Müller TD, Pommerrenig B, Neuhaus HE, Marten I, Hedrich R. Sugar beet PMT5a and STP13 carriers suitable for proton-driven plasma membrane sucrose and glucose import in taproots. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 118:2219-2232. [PMID: 38602250 DOI: 10.1111/tpj.16740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 02/26/2024] [Accepted: 03/18/2024] [Indexed: 04/12/2024]
Abstract
Sugar beet (Beta vulgaris) is the major sugar-producing crop in Europe and Northern America, as the taproot stores sucrose at a concentration of around 20%. Genome sequence analysis together with biochemical and electrophysiological approaches led to the identification and characterization of the TST sucrose transporter driving vacuolar sugar accumulation in the taproot. However, the sugar transporters mediating sucrose uptake across the plasma membrane of taproot parenchyma cells remained unknown. As with glucose, sucrose stimulation of taproot parenchyma cells caused inward proton fluxes and plasma membrane depolarization, indicating a sugar/proton symport mechanism. To decipher the nature of the corresponding proton-driven sugar transporters, we performed taproot transcriptomic profiling and identified the cold-induced PMT5a and STP13 transporters. When expressed in Xenopus laevis oocytes, BvPMT5a was characterized as a voltage- and H+-driven low-affinity glucose transporter, which does not transport sucrose. In contrast, BvSTP13 operated as a high-affinity H+/sugar symporter, transporting glucose better than sucrose, and being more cold-tolerant than BvPMT5a. Modeling of the BvSTP13 structure with bound mono- and disaccharides suggests plasticity of the binding cleft to accommodate the different saccharides. The identification of BvPMT5a and BvSTP13 as taproot sugar transporters could improve breeding of sugar beet to provide a sustainable energy crop.
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Affiliation(s)
- Antonella Reyer
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
| | - Nadia Bazihizina
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
- Department of Agrifood Production and Environmental Sciences, Università degli Studi di Firenze, Florence, 50019, Sesto Fiorentino, Italy
| | - Justyna Jaślan
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
| | - Sönke Scherzer
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
| | - Nadine Schäfer
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
| | - Dawid Jaślan
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
- Faculty of Medicine, Walther Straub Institute of Pharmacology and Toxicology, Ludwig Maximilians-Universität, 80336, Munich, Germany
| | - Dirk Becker
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
| | - Thomas D Müller
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
| | - Benjamin Pommerrenig
- Plant Physiology, University of Kaiserslautern, 67663, Kaiserslautern, Germany
- Julius Kühn Institute (JKI) - Federal Research Centre for Cultivated Plants, Institute for Resistance Research and Stress Tolerance, Quedlinburg, 06484, Germany
| | - H Ekkehard Neuhaus
- Plant Physiology, University of Kaiserslautern, 67663, Kaiserslautern, Germany
| | - Irene Marten
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
| | - Rainer Hedrich
- Department of Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-Universität (JMU), Würzburg, 97082, Germany
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Xue G, Wu W, Fan Y, Ma C, Xiong R, Bai Q, Yao X, Weng W, Cheng J, Ruan J. Genome-wide identification, evolution, and role of SPL gene family in beet (Beta vulgaris L.) under cold stress. BMC Genomics 2024; 25:101. [PMID: 38262939 PMCID: PMC10804631 DOI: 10.1186/s12864-024-09995-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 01/09/2024] [Indexed: 01/25/2024] Open
Abstract
BACKGROUND SPL transcription factors play vital roles in regulating plant growth, development, and abiotic stress responses. Sugar beet (Beta vulgaris L.), one of the world's main sugar-producing crops, is a major source of edible and industrial sugars for humans. Although the SPL gene family has been extensively identified in other species, no reports on the SPL gene family in sugar beet are available. RESULTS Eight BvSPL genes were identified at the whole-genome level and were renamed based on their positions on the chromosome. The gene structure, SBP domain sequences, and phylogenetic relationship with Arabidopsis were analyzed for the sugar beet SPL gene family. The eight BvSPL genes were divided into six groups (II, IV, V, VI, VII, and VIII). Of the BvSPL genes, no tandem duplication events were found, but one pair of segmental duplications was present. Multiple cis-regulatory elements related to growth and development were identified in the 2000-bp region upstream of the BvSPL gene start codon (ATG). Using quantitative real-time polymerase chain reaction (qRT-PCR), the expression profiles of the eight BvSPL genes were examined under eight types of abiotic stress and during the maturation stage. BvSPL transcription factors played a vital role in abiotic stress, with BvSPL3 and BvSPL6 being particularly noteworthy. CONCLUSION Eight sugar beet SPL genes were identified at the whole-genome level. Phylogenetic trees, gene structures, gene duplication events, and expression profiles were investigated. The qRT-PCR analysis indicated that BvSPLs play a substantial role in the growth and development of sugar beet, potentially participating in the regulation of root expansion and sugar accumulation.
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Affiliation(s)
- Guoxing Xue
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Weijiao Wu
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Yue Fan
- College of Food Science and Engineering, Xinjiang Institute of Technology, 843199, Aksu, People's Republic of China
| | - Chao Ma
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Ruiqi Xiong
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Qing Bai
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Xin Yao
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Wenfeng Weng
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Jianping Cheng
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China
| | - Jingjun Ruan
- College of Agriculture, Guizhou University, 550025, Guiyang, People's Republic of China.
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Misra V, Mall AK, Pandey H, Srivastava S, Sharma A. Advancements and prospects of CRISPR/Cas9 technologies for abiotic and biotic stresses in sugar beet. Front Genet 2023; 14:1235855. [PMID: 38028586 PMCID: PMC10665535 DOI: 10.3389/fgene.2023.1235855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 10/18/2023] [Indexed: 12/01/2023] Open
Abstract
Sugar beet is a crop with high sucrose content, known for sugar production and recently being considered as an emerging raw material for bioethanol production. This crop is also utilized as cattle feed, mainly when animal green fodder is scarce. Bioethanol and hydrogen gas production from this crop is an essential source of clean energy. Environmental stresses (abiotic/biotic) severely affect the productivity of this crop. Over the past few decades, the molecular mechanisms of biotic and abiotic stress responses in sugar beet have been investigated using next-generation sequencing, gene editing/silencing, and over-expression approaches. This information can be efficiently utilized through CRISPR/Cas 9 technology to mitigate the effects of abiotic and biotic stresses in sugar beet cultivation. This review highlights the potential use of CRISPR/Cas 9 technology for abiotic and biotic stress management in sugar beet. Beet genes known to be involved in response to alkaline, cold, and heavy metal stresses can be precisely modified via CRISPR/Cas 9 technology for enhancing sugar beet's resilience to abiotic stresses with minimal off-target effects. Similarly, CRISPR/Cas 9 technology can help generate insect-resistant sugar beet varieties by targeting susceptibility-related genes, whereas incorporating Cry1Ab and Cry1C genes may provide defense against lepidopteron insects. Overall, CRISPR/Cas 9 technology may help enhance sugar beet's adaptability to challenging environments, ensuring sustainable, high-yield production.
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Affiliation(s)
- Varucha Misra
- ICAR-Indian Institute of Sugarcane Research, Lucknow, India
| | - A. K. Mall
- ICAR-Indian Institute of Sugarcane Research, Lucknow, India
| | - Himanshu Pandey
- ICAR-Indian Institute of Sugarcane Research, Lucknow, India
- Khalsa College, Amritsar, India
| | | | - Avinash Sharma
- Faculty of Agricultural Sciences, Arunachal University of Studies, Namsai, India
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Okooboh GO, Haferkamp I, Rühle T, Leister D, Neuhaus HE. Expression of the plastocyanin gene PETE2 in Camelina sativa improves seed yield and salt tolerance. JOURNAL OF PLANT PHYSIOLOGY 2023; 290:154103. [PMID: 37788546 DOI: 10.1016/j.jplph.2023.154103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2023] [Revised: 09/15/2023] [Accepted: 09/25/2023] [Indexed: 10/05/2023]
Abstract
Plastocyanin functions as an electron carrier in the photosynthetic electron transport chain, located at the thylakoid membrane. In several species, endogenous plastocyanin levels are correlated with the photosynthetic electron transport rate. Overexpression of plastocyanin genes in Arabidopsis thaliana increases plant size, but this phenomenon has not been observed in crop species. Here, we investigated the effects of heterologous expression of a gene encoding a plastocyanin isoform from Arabidopsis, AtPETE2, in the oil seed crop Camelina sativa under standard growth conditions and under salt stress. AtPETE2 heterologous expression enhanced photosynthetic activity in Camelina, accelerating plant development and improving seed yield under standard growth conditions. Additionally, CsPETE2 from Camelina was induced by salt stress and AtPETE2 expression lines had larger primary roots and more lateral roots than the wild type. AtPETE2 expression lines also had larger seeds and higher total seed yield under long-term salt stress compared with non-transgenic Camelina. Our results demonstrate that increased plastocyanin levels in Camelina can enhance photosynthesis and productivity, as well as tolerance to osmotic and salt stresses. Heterologous expression of plastocyanin may be a useful strategy to mitigate crop stress in saline soils.
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Affiliation(s)
- Gloria O Okooboh
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str., D-67653, Kaiserslautern, Germany
| | - Ilka Haferkamp
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str., D-67653, Kaiserslautern, Germany
| | - Thilo Rühle
- Department of Biology I, Molecular Plant Biology, Ludwig-Maximilians University of Munich, D-82152, Planegg, Martinsried, Germany
| | - Dario Leister
- Department of Biology I, Molecular Plant Biology, Ludwig-Maximilians University of Munich, D-82152, Planegg, Martinsried, Germany
| | - H Ekkehard Neuhaus
- Plant Physiology, University of Kaiserslautern, Erwin-Schrödinger-Str., D-67653, Kaiserslautern, Germany.
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Sun Y, Chen J, Wang W, Zhu L. α-Galactosidase interacts with persistent organic pollutants to induce oxidative stresses in rice (Oryza sativa L.). ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 335:122353. [PMID: 37562527 DOI: 10.1016/j.envpol.2023.122353] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 08/06/2023] [Accepted: 08/08/2023] [Indexed: 08/12/2023]
Abstract
Persistent organic pollutants (POPs) in agricultural soil often triggered metabolic alterations and phytotoxicity in plants, ultimately threatening crop quality. Unraveling the phytotoxic mechanisms of POPs in crops is critical for evaluating their environmental risks. Herein, the molecular mechanism of POP-induced phytotoxicity in rice (Oryza sativa L.) was analyzed using metabolic profile, enzyme activity, and gene expression as linkages, including polycyclic aromatic hydrocarbons, polybrominated diphenyl ethers, polychlorinated biphenyls, and phthalate esters. Despite no observable changes in phenotypic traits (e.g., biomass and length of aboveground), the levels of reactive oxygen species (ROS) were promoted under stresses of the tested POPs, particularly 2,2',4,4'-tetrabromodiphenyl ether (BDE-47), dibutyl phthalate (DBP), and di(2-ethylhexyl) phthalate (DEHP). Metabolomics analysis revealed that ROS contents positively correlated with metabolic perturbation levels (r = 0.83), among which the galactose metabolism was significantly inhibited when exposed to DBP, DEHP, or BDE-47. The α-Galactosidase (α-Gal) involved in galactose metabolism was targeted as the key enzyme for the phytotoxicity of DBP, DEHP, and BDE-47, which was revealed by the inhibition of saccharide levels (45.5-82.1%), the catalytic activity of α-Gal (18.5-24.3%), and the gene expression (28.5-34.5%). Molecular docking simulation suggested that the three POPs occupied the active sites of α-Gal and formed a stable protein-ligand complex, thus inhibiting the catalytic activity of α-Gal. Partial least-squares regression analysis indicated that α-Gal activity was negatively associated with hydrogen bond acceptor, rotatable bond, and topological polar surface area of POPs. The results offered novel insights into the molecular mechanisms of phytotoxicity of POPs and provided important information for evaluating the environmental risk of POPs.
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Affiliation(s)
- Yingying Sun
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, 310058, China; Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang, 310058, China
| | - Jie Chen
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, 310058, China; Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang, 310058, China
| | - Wei Wang
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, 310058, China; Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang, 310058, China
| | - Lizhong Zhu
- College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, Zhejiang, 310058, China; Zhejiang Provincial Key Laboratory of Organic Pollution Process and Control, Hangzhou, Zhejiang, 310058, China.
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Lamm CE, Rabbi IY, Medeiros DB, Rosado-Souza L, Pommerrenig B, Dahmani I, Rüscher D, Hofmann J, van Doorn AM, Schlereth A, Neuhaus HE, Fernie AR, Sonnewald U, Zierer W. Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 116:38-57. [PMID: 37329210 DOI: 10.1111/tpj.16357] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 05/19/2023] [Accepted: 06/14/2023] [Indexed: 06/18/2023]
Abstract
Cassava's storage roots represent one of the most important sources of nutritional carbohydrates worldwide. Particularly, smallholder farmers in sub-Saharan Africa depend on this crop plant, where resilient and yield-improved varieties are of vital importance to support steadily increasing populations. Aided by a growing understanding of the plant's metabolism and physiology, targeted improvement concepts already led to visible gains in recent years. To expand our knowledge and to contribute to these successes, we investigated storage roots of eight cassava genotypes with differential dry matter content from three successive field trials for their proteomic and metabolic profiles. At large, the metabolic focus in storage roots transitioned from cellular growth processes toward carbohydrate and nitrogen storage with increasing dry matter content. This is reflected in higher abundance of proteins related to nucleotide synthesis, protein turnover, and vacuolar energization in low starch genotypes, while proteins involved in sugar conversion and glycolysis were more prevalent in high dry matter genotypes. This shift in metabolic orientation was underlined by a clear transition from oxidative- to substrate-level phosphorylation in high dry matter genotypes. Our analyses highlight metabolic patterns that are consistently and quantitatively associated with high dry matter accumulation in cassava storage roots, providing fundamental understanding of cassava's metabolism as well as a data resource for targeted genetic improvement.
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Affiliation(s)
- Christian E Lamm
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - Ismail Y Rabbi
- International Institute of Tropical Agriculture, Ibadan, Nigeria
| | | | - Laise Rosado-Souza
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | | | - Ismail Dahmani
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - David Rüscher
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - Jörg Hofmann
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - Anna M van Doorn
- International Institute of Tropical Agriculture, Ibadan, Nigeria
| | - Armin Schlereth
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | | | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany
| | - Uwe Sonnewald
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
| | - Wolfgang Zierer
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Division of Biochemistry, Erlangen, Germany
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12
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Felkel S, Dohm JC, Himmelbauer H. Genomic variation in the genus Beta based on 656 sequenced beet genomes. Sci Rep 2023; 13:8654. [PMID: 37244945 DOI: 10.1038/s41598-023-35691-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Accepted: 05/22/2023] [Indexed: 05/29/2023] Open
Abstract
Cultivated beets (Beta vulgaris ssp. vulgaris) constitute important crop plants, in particular sugar beet as an indispensable source of sucrose. Several species of wild beets of the genus Beta with distribution along the European Atlantic coast, Macaronesia, and throughout the Mediterranean area exist. Thorough characterization of beet genomes is required for straightforward access to genes promoting genetic resistance against biotic and abiotic stress. Analysing short-read data of 656 sequenced beet genomes, we identified 10 million variant positions in comparison to the sugar beet reference genome RefBeet-1.2. The main groups of species and subspecies were distinguishable based on shared variation, and the separation of sea beets (Beta vulgaris ssp. maritima) into a Mediterranean and an Atlantic subgroup as suggested by previous studies could be confirmed. Complementary approaches of variant-based clustering were employed based on PCA, genotype likelihoods, tree calculations, and admixture analysis. Outliers suggested the occurrence of inter(sub)specific hybridisation, independently confirmed by different analyses. Screens for regions under artificial selection in the sugar beet genome identified 15 Mbp of the genome as variation-poor, enriched for genes involved in shoot system development, stress response, and carbohydrate metabolism. The resources presented herein will be valuable for crop improvement and wild species monitoring and conservation efforts, and for studies on beet genealogy, population structure and population dynamics. Our study provides a wealth of data for in-depth analyses of further aspects of the beet genome towards a thorough understanding of the biology of this important complex of a crop species and its wild relatives.
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Affiliation(s)
- Sabine Felkel
- Institute of Computational Biology, Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, 1190, Vienna, Austria
| | - Juliane C Dohm
- Institute of Computational Biology, Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, 1190, Vienna, Austria.
| | - Heinz Himmelbauer
- Institute of Computational Biology, Department of Biotechnology, University of Natural Resources and Life Sciences, Muthgasse 18, 1190, Vienna, Austria.
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13
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Peng T, Guo C, Yang J, Wan X, Wang W, Zhang J, Bao M, Zhang J. Transcriptome analysis revealed molecular basis of cold response in Prunus mume. MOLECULAR BREEDING : NEW STRATEGIES IN PLANT IMPROVEMENT 2023; 43:34. [PMID: 37312744 PMCID: PMC10248647 DOI: 10.1007/s11032-023-01376-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 03/29/2023] [Indexed: 06/15/2023]
Abstract
Japanese apricot (Prunus mume Sieb. et Zucc.) is a traditional woody flower and fruit tree restrictedly cultivated in northern area due to its inability to survive harsh winters and early springs. In the current study, RNA-seq and physiological assay were used to study the cold response of P. mume 'Xuemei'. A total of 4705 genes were identified as differentially expressed genes (DEGs) in the 21 pairwise comparisons among seven time points under 0 °C cold treatment, and 3678 of them showed differential levels compared with control at normal temperature. The gene expression profiles indicated that the number of upregulated genes increased with prolongation of treatment time throughout the whole 48 h. Hierarchical clustering suggested three obvious phases of the gene expression profiles. Gene ontology (GO) analysis of the 4705 DEGs resulted in 102 significantly enriched GO items in which the transcription activity was dominant. 225 DEGs were predicted to encode transcription factor (TF) genes. Some important TFs (ERF, CBF, WRKY, NAC, MYB, bHLH) were strongly induced during the whole cold treatment. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis suggested that plant signal transduction pathways such as plant hormone and calcium (Ca2+) were notable. Metabolic pathways such as sugar metabolism, especially RFOs (raffinose family oligosaccharides) were activated, which was accompanied by the accumulation of soluble sugars. SOD and POD enzyme activities coupled with reactive oxygen species (ROS)-related gene expression profile implied a gradually induced ROS scavenging system under cold treatment. These results might shed light on the sensitivity to cold stress in Japanese apricot and provide new insights into hardiness studies in P. mume and its related species. Supplementary Information The online version contains supplementary material available at 10.1007/s11032-023-01376-2.
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Affiliation(s)
- Ting Peng
- College of Agriculture, Guizhou University, Guiyang, 550000 People’s Republic of China
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
| | - Cong Guo
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
- Institute of Economic Crops, Hubei Academy of Agricultural Sciences, Wuhan, 430070 People’s Republic of China
| | - Jie Yang
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
- School of Nuclear Technology and Chemistry and Biology, Hubei University of Science and Technology, Xianning, 437100 People’s Republic of China
| | - Xueli Wan
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
- College of Landscape and Forestry, Qingdao Agricultural University, Qingdao, 266109 People’s Republic of China
| | - Wenwu Wang
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
| | - Jiaqi Zhang
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
| | - Manzhu Bao
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
| | - Junwei Zhang
- Key Laboratory of Horticultural Plant Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070 People’s Republic of China
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14
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Wang X, Song B, Wu Z, Zhao X, Song X, Adil MF, Riaz M, Lal MK, Huang W. Insights into physiological and molecular mechanisms underlying efficient utilization of boron in different boron efficient Beta vulgaris L. varieties. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 197:107619. [PMID: 36931121 DOI: 10.1016/j.plaphy.2023.02.049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 02/10/2023] [Accepted: 02/26/2023] [Indexed: 06/18/2023]
Abstract
Boron (B) deficiency and consequent limitation of plant yield and quality, particularly of sugar beet (Beta vulgaris L.) has emerged as a maior problem,which is exacerbating due to cultivar dependent variability in B deficiency tolerance. Pertinently, the current study was designed to elucidate the physiological and molecular mechanisms of B deficiency tolerance of sugar beet varieties KWS1197 (B-efficient variety) and KWS0143 (B-inefficient variety). A hydroponic experiment was conducted employing two B levels B0.1 (0.1 μM L-1 H3BO3, deficiency) and B50 (50 μM L-1 H3BO3, adequacy). Boron deficiency greatly inhibited root elongation and dry matter accumulation; however, formation of lateral roots stimulated and average root diameter was increased. Results exhibited that by up-regulating the expression of NIP5-1, NIP6-1, and BOR2, and suppressing the expression of BOR4, cultivar KWS1197, in contrast to KWS0143, managed to transfer sufficient amount of B to the aboveground plant parts, facilitating its effective absorption and utilization. Accumulation of malondialdehyde (MDA) and reactive oxygen species (ROS) was also mellowed in KWS1197, as well as the oxidative damage to root cells via preservation of the antioxidant enzyme system. Additionally, the expression of essential enzymes for biosynthesis of phytohormone (PYR/PYL) and lignin (COMT, POX, and CCoAOMT) were found to be highly up-regulated in KWS1197. Deductively, through effective B absorption and transportation, balanced nutrient accumulation, and an activated antioxidant enzyme system, B-efficient cultivars may cope with B deficiency while retaining a superior cellular structure to enable root development.
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Affiliation(s)
- Xiangling Wang
- Sugar Beet Engineering Research Center of Heilongjiang Province, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, 150080, China
| | - Baiquan Song
- Sugar Beet Engineering Research Center of Heilongjiang Province, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, 150080, China.
| | - Zhenzhen Wu
- Sugar Beet Engineering Research Center of Heilongjiang Province, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, 150080, China
| | - Xiaoyu Zhao
- Sugar Beet Engineering Research Center of Heilongjiang Province, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, 150080, China
| | - Xin Song
- Sugar Beet Engineering Research Center of Heilongjiang Province, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, 150080, China
| | - Muhammad Faheem Adil
- Zhejiang Key Laboratory of Crop Germplasm Resources, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, 310058, China
| | - Muhammad Riaz
- College of Resources and Environment, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China
| | - Milan Kumar Lal
- ICAR-Central Potato Research Institute, Shimla, Himachal Pradesh, India
| | - Wengong Huang
- Heilongjiang Academy of Agricultural Sciences, Safety and Quality Institute of Agricultural Products, Harbin, 150086, China
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15
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Sanyal R, Kumar S, Pattanayak A, Kar A, Bishi SK. Optimizing raffinose family oligosaccharides content in plants: A tightrope walk. FRONTIERS IN PLANT SCIENCE 2023; 14:1134754. [PMID: 37056499 PMCID: PMC10088399 DOI: 10.3389/fpls.2023.1134754] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 03/08/2023] [Indexed: 06/19/2023]
Abstract
Plants synthesize various compounds for their growth, metabolism, and stress mitigation, and one such group of compounds is the raffinose family of oligosaccharides (RFOs). RFOs are non-reducing oligosaccharides having galactose residues attached to a sucrose moiety. They act as carbohydrate reserves in plants, assisting in seed germination, desiccation tolerance, and biotic/abiotic stress tolerance. Although legumes are among the richest sources of dietary proteins, the direct consumption of legumes is hindered by an excess of RFOs in the edible parts of the plant, which causes flatulence in humans and monogastric animals. These opposing characteristics make RFOs manipulation a complicated tradeoff. An in-depth knowledge of the chemical composition, distribution pattern, tissue mobilization, and metabolism is required to optimize the levels of RFOs. The most recent developments in our understanding of RFOs distribution, physiological function, genetic regulation of their biosynthesis, transport, and degradation in food crops have been covered in this review. Additionally, we have suggested a few strategies that can sustainably reduce RFOs in order to solve the flatulence issue in animals. The comprehensive information in this review can be a tool for researchers to precisely control the level of RFOs in crops and create low antinutrient, nutritious food with wider consumer acceptability.
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Affiliation(s)
- Rajarshi Sanyal
- School of Genomics and Molecular Breeding, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, India
- Division of Biochemistry, ICAR-Indian Agricultural Research Institute, Pusa, New Delhi, India
| | - Sandeep Kumar
- Automation & Plant Engineering Division, ICAR-National Institute of Secondary Agriculture, Ranchi, Jharkhand, India
| | - Arunava Pattanayak
- School of Genomics and Molecular Breeding, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, India
| | - Abhijit Kar
- Automation & Plant Engineering Division, ICAR-National Institute of Secondary Agriculture, Ranchi, Jharkhand, India
| | - Sujit K. Bishi
- School of Genomics and Molecular Breeding, ICAR-Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, India
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16
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López D, Sanhueza C, Salvo-Garrido H, Bascunan-Godoy L, Bravo LA. How Does Diurnal and Nocturnal Warming Affect the Freezing Resistance of Antarctic Vascular Plants? PLANTS (BASEL, SWITZERLAND) 2023; 12:806. [PMID: 36840154 PMCID: PMC9966323 DOI: 10.3390/plants12040806] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/24/2023] [Accepted: 02/01/2023] [Indexed: 06/18/2023]
Abstract
The Antarctic Peninsula has rapidly warmed up in past decades, and global warming has exhibited an asymmetric trend; therefore, it is interesting to understand whether nocturnal or diurnal warming is the most relevant for plant cold deacclimation. This study aimed to evaluate the effect of diurnal and nocturnal warming on Antarctic vascular plant's freezing resistance under laboratory conditions. This was studied by measuring the lethal temperature for 50% of tissue (LT50), ice nucleation temperature (INT), and freezing point (FP) on Deschampsia antarctica and Colobanthus quitensis plants. Additionally, soluble carbohydrates content and dehydrin levels were analyzed during nocturnal and diurnal temperatures increase. Nocturnal warming led to a 7 °C increase in the LT50 of D. antarctica and reduced dehydrin-like peptide expression. Meanwhile, C. quitensis warmed plants reduce their LT50 to about 3.6 °C. Both species reduce their sucrose content by more than 28% in warming treatments. Therefore, nocturnal warming leads to cold deacclimation in both plant species, while C. quitensis plants are also cold-deacclimated upon warm days. This suggests that even when the remaining freezing resistance of both species allows them to tolerate summer freezing events, C. quitensis can reach its boundaries of freezing vulnerability in the near future if warming in the Antarctic Peninsula progress.
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Affiliation(s)
- Dariel López
- Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Medioambiente and Center of Plant, Soil Interactions and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
| | - Carolina Sanhueza
- Laboratorio de Fisiología Vegetal, Departamento de Botánica, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción 4030000, Chile
| | - Haroldo Salvo-Garrido
- Centro de Genómica Nutricional Agroacuícola, Ciencia en Plantas, Temuco 4781158, Chile
| | - Luisa Bascunan-Godoy
- Laboratorio de Fisiología Vegetal, Departamento de Botánica, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción 4030000, Chile
| | - León A. Bravo
- Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Medioambiente and Center of Plant, Soil Interactions and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
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17
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Lv L, Dong C, Liu Y, Zhao A, Zhang Y, Li H, Chen X. Transcription-associated metabolomic profiling reveals the critical role of frost tolerance in wheat. BMC PLANT BIOLOGY 2022; 22:333. [PMID: 35820806 PMCID: PMC9275158 DOI: 10.1186/s12870-022-03718-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2022] [Accepted: 06/28/2022] [Indexed: 05/31/2023]
Abstract
BACKGROUND Low temperature is a crucial stress factor of wheat (Triticum aestivum L.) and adversely impacts on plant growth and grain yield. Multi-million tons of grain production are lost annually because crops lack the resistance to survive in winter. Particularlly, winter wheat yields was severely damaged under extreme cold conditions. However, studies about the transcriptional and metabolic mechanisms underlying cold stresses in wheat are limited so far. RESULTS In this study, 14,466 differentially expressed genes (DEGs) were obtained between wild-type and cold-sensitive mutants, of which 5278 DEGs were acquired after cold treatment. 88 differential accumulated metabolites (DAMs) were detected, including P-coumaroyl putrescine of alkaloids, D-proline betaine of mino acids and derivativ, Chlorogenic acid of the Phenolic acids. The comprehensive analysis of metabolomics and transcriptome showed that the cold resistance of wheat was closely related to 13 metabolites and 14 key enzymes in the flavonol biosynthesis pathway. The 7 enhanced energy metabolites and 8 up-regulation key enzymes were also compactly involved in the sucrose and amino acid biosynthesis pathway. Moreover, quantitative real-time PCR (qRT-PCR) revealed that twelve key genes were differentially expressed under cold, indicating that candidate genes POD, Tacr7, UGTs, and GSTU6 which were related to cold resistance of wheat. CONCLUSIONS In this study, we obtained the differentially expressed genes and differential accumulated metabolites in wheat under cold stress. Using the DEGs and DAMs, we plotted regulatory pathway maps of the flavonol biosynthesis pathway, sucrose and amino acid biosynthesis pathway related to cold resistance of wheat. It was found that candidate genes POD, Tacr7, UGTs and GSTU6 are related to cold resistance of wheat. This study provided valuable molecular information and new genetic engineering clues for the further study on plant resistance to cold stress.
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Affiliation(s)
- Liangjie Lv
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Crop Genetics and Breeding Laboratory of Hebei, Shijiazhuang, 050000 China
| | - Ce Dong
- Handan Academy of Agricultural Sciences, Handan, 056000 Hebei China
| | - Yuping Liu
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Crop Genetics and Breeding Laboratory of Hebei, Shijiazhuang, 050000 China
| | - Aiju Zhao
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Crop Genetics and Breeding Laboratory of Hebei, Shijiazhuang, 050000 China
| | - Yelun Zhang
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Crop Genetics and Breeding Laboratory of Hebei, Shijiazhuang, 050000 China
| | - Hui Li
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Crop Genetics and Breeding Laboratory of Hebei, Shijiazhuang, 050000 China
| | - Xiyong Chen
- Institute of Cereal and Oil Crops, Hebei Academy of Agriculture and Forestry Sciences, Crop Genetics and Breeding Laboratory of Hebei, Shijiazhuang, 050000 China
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18
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Yolcu S, Alavilli H, Ganesh P, Asif M, Kumar M, Song K. An Insight into the Abiotic Stress Responses of Cultivated Beets ( Beta vulgaris L.). PLANTS (BASEL, SWITZERLAND) 2021; 11:plants11010012. [PMID: 35009016 PMCID: PMC8747243 DOI: 10.3390/plants11010012] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2021] [Revised: 12/12/2021] [Accepted: 12/14/2021] [Indexed: 05/03/2023]
Abstract
Cultivated beets (sugar beets, fodder beets, leaf beets, and garden beets) belonging to the species Beta vulgaris L. are important sources for many products such as sugar, bioethanol, animal feed, human nutrition, pulp residue, pectin extract, and molasses. Beta maritima L. (sea beet or wild beet) is a halophytic wild ancestor of all cultivated beets. With a requirement of less water and having shorter growth period than sugarcane, cultivated beets are preferentially spreading from temperate regions to subtropical countries. The beet cultivars display tolerance to several abiotic stresses such as salt, drought, cold, heat, and heavy metals. However, many environmental factors adversely influence growth, yield, and quality of beets. Hence, selection of stress-tolerant beet varieties and knowledge on the response mechanisms of beet cultivars to different abiotic stress factors are most required. The present review discusses morpho-physiological, biochemical, and molecular responses of cultivated beets (B. vulgaris L.) to different abiotic stresses including alkaline, cold, heat, heavy metals, and UV radiation. Additionally, we describe the beet genes reported for their involvement in response to these stress conditions.
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Affiliation(s)
- Seher Yolcu
- Faculty of Engineering and Natural Sciences, Sabanci University, Istanbul 34956, Turkey;
- Correspondence: (S.Y.); (H.A.); (K.S.)
| | - Hemasundar Alavilli
- Department of Bioresources Engineering, Sejong University, Seoul 05006, Korea
- Correspondence: (S.Y.); (H.A.); (K.S.)
| | - Pushpalatha Ganesh
- Department of Plant Biotechnology, M. S. Swaminathan School of Agriculture, Centurion University of Technology and Management, Odisha 761211, India;
| | - Muhammad Asif
- Faculty of Engineering and Natural Sciences, Sabanci University, Istanbul 34956, Turkey;
| | - Manu Kumar
- Department of Life Science, College of Life Science and Biotechnology, Dongguk University, Seoul 10326, Korea;
| | - Kihwan Song
- Department of Bioresources Engineering, Sejong University, Seoul 05006, Korea
- Correspondence: (S.Y.); (H.A.); (K.S.)
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