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de Oliveira EV, Aragão DP, Gonçalves LMG. A New Auto-Regressive Multi-Variable Modified Auto-Encoder for Multivariate Time-Series Prediction: A Case Study with Application to COVID-19 Pandemics. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2024; 21:497. [PMID: 38673408 PMCID: PMC11049878 DOI: 10.3390/ijerph21040497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Revised: 03/28/2024] [Accepted: 04/05/2024] [Indexed: 04/28/2024]
Abstract
The SARS-CoV-2 global pandemic prompted governments, institutions, and researchers to investigate its impact, developing strategies based on general indicators to make the most precise predictions possible. Approaches based on epidemiological models were used but the outcomes demonstrated forecasting with uncertainty due to insufficient or missing data. Besides the lack of data, machine-learning models including random forest, support vector regression, LSTM, Auto-encoders, and traditional time-series models such as Prophet and ARIMA were employed in the task, achieving remarkable results with limited effectiveness. Some of these methodologies have precision constraints in dealing with multi-variable inputs, which are important for problems like pandemics that require short and long-term forecasting. Given the under-supply in this scenario, we propose a novel approach for time-series prediction based on stacking auto-encoder structures using three variations of the same model for the training step and weight adjustment to evaluate its forecasting performance. We conducted comparison experiments with previously published data on COVID-19 cases, deaths, temperature, humidity, and air quality index (AQI) in São Paulo City, Brazil. Additionally, we used the percentage of COVID-19 cases from the top ten affected countries worldwide until May 4th, 2020. The results show 80.7% and 10.3% decrease in RMSE to entire and test data over the distribution of 50 trial-trained models, respectively, compared to the first experiment comparison. Also, model type#3 achieved 4th better overall ranking performance, overcoming the NBEATS, Prophet, and Glounts time-series models in the second experiment comparison. This model shows promising forecast capacity and versatility across different input dataset lengths, making it a prominent forecasting model for time-series tasks.
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Affiliation(s)
| | | | - Luiz Marcos Garcia Gonçalves
- Department of Computer Engineering and Automation, Federal University of Rio Grande do Norte, Av. Salgado Filho, 3000, Campus Universitário, Lagoa Nova, Natal 59078-970, RN, Brazil; (E.V.d.O.); (D.P.A.)
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Cañedo MC, Lopes TIB, Rossato L, Nunes IB, Faccin ID, Salomé TM, Simionatto S. Impact of COVID-19 pandemic in the Brazilian maternal mortality ratio: A comparative analysis of Neural Networks Autoregression, Holt-Winters exponential smoothing, and Autoregressive Integrated Moving Average models. PLoS One 2024; 19:e0296064. [PMID: 38295029 PMCID: PMC10830046 DOI: 10.1371/journal.pone.0296064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 12/05/2023] [Indexed: 02/02/2024] Open
Abstract
BACKGROUND AND OBJECTIVES The acute respiratory infection caused by severe acute respiratory syndrome coronavirus disease (COVID-19) has resulted in increased mortality among pregnant, puerperal, and neonates. Brazil has the highest number of maternal deaths and a distressing fatality rate of 7.2%, more than double the country's current mortality rate of 2.8%. This study investigates the impact of the COVID-19 pandemic on the Brazilian Maternal Mortality Ratio (BMMR) and forecasts the BMMR up to 2025. METHODS To assess the impact of the COVID-19 pandemic on the BMMR, we employed Holt-Winters, Autoregressive Integrated Moving Average (ARIMA), and Neural Networks Autoregression (NNA). We utilized a retrospective time series spanning twenty-five years (1996-2021) to forecast the BMMR under both a COVID-19 pandemic scenario and a controlled COVID-19 scenario. RESULTS Brazil consistently exhibited high maternal mortality values (mean BMMR [1996-2019] = 57.99 ±6.34/100,000 live births) according to World Health Organization criteria. The country experienced its highest mortality peak in the historical BMMR series in the second quarter of 2021 (197.75/100,000 live births), representing a more than 200% increase compared to the previous period. Holt-Winter and ARIMA models demonstrated better agreement with prediction results beyond the sample data, although NNA provided a better fit to previous data. CONCLUSIONS Our study revealed an increase in BMMR and its temporal correlation with COVID-19 incidence. Additionally, it showed that Holt-Winter and ARIMA models can be employed for BMMR forecasting with lower errors. This information can assist governments and public health agencies in making timely and informed decisions.
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Affiliation(s)
- Mayara Carolina Cañedo
- Laboratório de Pesquisa em Ciências da Saúde, Universidade Federal da Grande Dourados, Dourados, MS, Brazil
| | - Thiago Inácio Barros Lopes
- Laboratório de Pesquisa em Ciências da Saúde, Universidade Federal da Grande Dourados, Dourados, MS, Brazil
| | - Luana Rossato
- Laboratório de Pesquisa em Ciências da Saúde, Universidade Federal da Grande Dourados, Dourados, MS, Brazil
| | - Isadora Batista Nunes
- Laboratório de Pesquisa em Ciências da Saúde, Universidade Federal da Grande Dourados, Dourados, MS, Brazil
| | - Izadora Dillis Faccin
- Laboratório de Pesquisa em Ciências da Saúde, Universidade Federal da Grande Dourados, Dourados, MS, Brazil
| | - Túlio Máximo Salomé
- Laboratório de Pesquisa em Ciências da Saúde, Universidade Federal da Grande Dourados, Dourados, MS, Brazil
| | - Simone Simionatto
- Laboratório de Pesquisa em Ciências da Saúde, Universidade Federal da Grande Dourados, Dourados, MS, Brazil
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Talkhi N, Akhavan Fatemi N, Jabbari Nooghabi M, Soltani E, Jabbari Nooghabi A. Using meta-learning to recommend an appropriate time-series forecasting model. BMC Public Health 2024; 24:148. [PMID: 38200512 PMCID: PMC10782782 DOI: 10.1186/s12889-023-17627-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 12/31/2023] [Indexed: 01/12/2024] Open
Abstract
BACKGROUND There are various forecasting algorithms available for univariate time series, ranging from simple to sophisticated and computational. In practice, selecting the most appropriate algorithm can be difficult, because there are too many algorithms. Although expert knowledge is required to make an informed decision, sometimes it is not feasible due to the lack of such resources as time, money, and manpower. METHODS In this study, we used coronavirus disease 2019 (COVID-19) data, including the absolute numbers of confirmed, death and recovered cases per day in 187 countries from February 20, 2020, to May 25, 2021. Two popular forecasting models, including Auto-Regressive Integrated Moving Average (ARIMA) and exponential smoothing state-space model with Trigonometric seasonality, Box-Cox transformation, ARMA errors, Trend, and Seasonal components (TBATS) were used to forecast the data. Moreover, the data were evaluated by the root mean squared error (RMSE), mean absolute error (MAE), mean absolute percentage error (MAPE), and symmetric mean absolute percentage error (SMAPE) criteria to label time series. The various characteristics of each time series based on the univariate time series structure were extracted as meta-features. After that, three machine-learning classification algorithms, including support vector machine (SVM), decision tree (DT), random forest (RF), and artificial neural network (ANN) were used as meta-learners to recommend an appropriate forecasting model. RESULTS The finding of the study showed that the DT model had a better performance in the classification of time series. The accuracy of DT in the training and testing phases was 87.50% and 82.50%, respectively. The sensitivity of the DT algorithm in the training phase was 86.58% and its specificity was 88.46%. Moreover, the sensitivity and specificity of the DT algorithm in the testing phase were 73.33% and 88%, respectively. CONCLUSION In general, the meta-learning approach was able to predict the appropriate forecasting model (ARIMA and TBATS) based on some time series features. Considering some characteristics of the desired COVID-19 time series, the ARIMA or TBATS forecasting model might be recommended to forecast the death, confirmed, and recovered trend cases of COVID-19 by the DT model.
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Affiliation(s)
- Nasrin Talkhi
- Department of Biostatistics, School of Health, Mashhad University of Medical Sciences, Mashhad, Iran
| | | | | | - Ehsan Soltani
- Surgical Oncology Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
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Ghafouri-Fard S, Shoorei H, Sabernia T, Hussen BM, Taheri M, Pourmoshtagh H. Circular RNAs and inflammation: Epigenetic regulators with diagnostic role. Pathol Res Pract 2023; 251:154912. [PMID: 38238072 DOI: 10.1016/j.prp.2023.154912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 10/18/2023] [Accepted: 10/26/2023] [Indexed: 01/23/2024]
Abstract
Circular RNAs (circRNAs) are a group of transcripts generally known to be non-coding transcripts, but occasionally producing short peptides. Circ_Ttc3/miR-148a, circ_TLK1/miR-106a-5p, circ_VMA21/miR-9-3p, circ_0068,888/miR-21-5p, circ_VMA21/miR-199a-5p, circ_AFF2/miR-375, circ_0008360/miR-135b-5p and circ-FBXW7/miR-216a-3p are examples of circRNA/miRNA pairs that contribute in the pathogenesis of immune-related conditions. CircRNAs have been found to regulate function of immune system and participate in the pathophysiology of immune-related disorders. In the current study, we searched PubMed and Google Scholar databases until July 2022 with the key words "circRNA" OR "circular RNA" AND "inflammation". Then, we assessed the abstract of retrieved articles to include original articles that assessed contribution of circRNAs in the pathoetiology of inflammation and related disorders. Finally, we went through the main texts of the articles and tabulated the available information. Therefore, the current study summarizes the role of circRNAs in the pathoetiology of sepsis, atherosclerosis, rheumatoid arthritis and osteoarthritis, immune-related cardiovascular, pulmonary, gastrointestinal and nervous system disorders.
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Affiliation(s)
- Soudeh Ghafouri-Fard
- Department of Medical Genetics, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Hamed Shoorei
- Cellular and Molecular Research Center, Birjand University of Medical Sciences, Birjand, Iran; Clinical Research Development Unit of Tabriz Valiasr Hospital, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Toofan Sabernia
- Department of Anatomical Sciences, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
| | - Bashdar Mahmud Hussen
- Department of Biomedical Sciences, College of Science, Cihan University-Erbil, Kurdistan Region, Iraq; Department of Clinical Analysis, College of Pharmacy, Hawler Medical University, Kurdistan Region, Iraq
| | - Mohammad Taheri
- Institute of Human Genetics, Jena University Hospital, Jena, Germany; Urology and Nephrology Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
| | - Hasan Pourmoshtagh
- Skull Base Research Center, Loghman Hakim Hospital, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
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Azzolina D, Lanera C, Comoretto R, Francavilla A, Rosi P, Casotto V, Navalesi P, Gregori D. Automatic Forecast of Intensive Care Unit Admissions: The Experience During the COVID-19 Pandemic in Italy. J Med Syst 2023; 47:84. [PMID: 37542644 PMCID: PMC10404188 DOI: 10.1007/s10916-023-01982-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 07/21/2023] [Indexed: 08/07/2023]
Abstract
The experience of the COVID-19 pandemic showed the importance of timely monitoring of admissions to the ICU admissions. The ability to promptly forecast the epidemic impact on the occupancy of beds in the ICU is a key issue for adequate management of the health care system.Despite this, most of the literature on predictive COVID-19 models in Italy has focused on predicting the number of infections, leaving trends in ordinary hospitalizations and ICU occupancies in the background.This work aims to present an ETS approach (Exponential Smoothing Time Series) time series forecasting tool for admissions to the ICU admissions based on ETS models. The results of the forecasting model are presented for the regions most affected by the epidemic, such as Veneto, Lombardy, Emilia-Romagna, and Piedmont.The mean absolute percentage errors (MAPE) between observed and predicted admissions to the ICU admissions remain lower than 11% for all considered geographical areas.In this epidemiological context, the proposed ETS forecasting model could be suitable to monitor, in a timely manner, the impact of COVID-19 disease on the health care system, not only during the early stages of the pandemic but also during the vaccination campaign, to quickly adapt possible preventive interventions.
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Affiliation(s)
- Danila Azzolina
- Department of Environmental and Preventive Sciences, University of Ferrara, Ferrara, Italy
- Unit of Biostatistics, Epidemiology, and Public Health, Department of Cardiac, Thoracic, Vascular Sciences and Public Health, University of Padova, Via Loredan, 18, Padova, 35131, Italy
| | - Corrado Lanera
- Unit of Biostatistics, Epidemiology, and Public Health, Department of Cardiac, Thoracic, Vascular Sciences and Public Health, University of Padova, Via Loredan, 18, Padova, 35131, Italy
| | - Rosanna Comoretto
- Department of Public Health and Pediatrics, University of Turin, Turin, Italy
| | - Andrea Francavilla
- Unit of Biostatistics, Epidemiology, and Public Health, Department of Cardiac, Thoracic, Vascular Sciences and Public Health, University of Padova, Via Loredan, 18, Padova, 35131, Italy
| | - Paolo Rosi
- Institute of Anaesthesia and Intensive Care, Padua University Hospital, Padua, Italy
- Department of Medicine (DIMED), University of Padua, Padua, Italy
| | - Veronica Casotto
- Unit of Biostatistics, Epidemiology, and Public Health, Department of Cardiac, Thoracic, Vascular Sciences and Public Health, University of Padova, Via Loredan, 18, Padova, 35131, Italy
| | - Paolo Navalesi
- Institute of Anaesthesia and Intensive Care, Padua University Hospital, Padua, Italy
- Department of Medicine (DIMED), University of Padua, Padua, Italy
| | - Dario Gregori
- Unit of Biostatistics, Epidemiology, and Public Health, Department of Cardiac, Thoracic, Vascular Sciences and Public Health, University of Padova, Via Loredan, 18, Padova, 35131, Italy.
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Wu Z, Loo CK, Obaidellah U, Pasupa K. A novel online multi-task learning for COVID-19 multi-output spatio-temporal prediction. Heliyon 2023; 9:e18771. [PMID: 37636411 PMCID: PMC10450863 DOI: 10.1016/j.heliyon.2023.e18771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 07/26/2023] [Accepted: 07/27/2023] [Indexed: 08/29/2023] Open
Abstract
In light of the ongoing COVID-19 pandemic, predicting its trend would significantly impact decision-making. However, this is not a straightforward task due to three main difficulties: temporal autocorrelation, spatial dependency, and concept drift caused by virus mutations and lockdown policies. Although machine learning has been extensively used in related work, no previous research has successfully addressed all three challenges simultaneously. To overcome this challenge, we developed a novel online multi-task regression algorithm that incorporates a chain structure to capture spatial dependency, the ADWIN drift detector to adapt to concept drift, and the lag time series feature to capture temporal autocorrelation. We conducted several comparative experiments based on the number of daily confirmed cases in 20 areas in California and affiliated cities. The results from our experiments demonstrate that our proposed model is superior in adapting to concept drift in COVID-19 data and capturing spatial dependencies across various regions. This leads to a significant improvement in prediction accuracy when compared to existing state-of-the-art batch machine learning methods, such as N-Beats, DeepAR, TCN, and LSTM.
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Affiliation(s)
- Zipeng Wu
- Faculty of Computer Science & Information Technology, University of Malaya,Kuala Lumpur, 50603, Malaysia
| | - Chu Kiong Loo
- Faculty of Computer Science & Information Technology, University of Malaya,Kuala Lumpur, 50603, Malaysia
| | - Unaizah Obaidellah
- Faculty of Computer Science & Information Technology, University of Malaya,Kuala Lumpur, 50603, Malaysia
| | - Kitsuchart Pasupa
- School of Information Technology, King Mongkut's Institute of Technology Ladkrabang,Bangkok, 10520, Thailand
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Leiva V, Alcudia E, Montano J, Castro C. An Epidemiological Analysis for Assessing and Evaluating COVID-19 Based on Data Analytics in Latin American Countries. BIOLOGY 2023; 12:887. [PMID: 37372171 DOI: 10.3390/biology12060887] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 06/14/2023] [Accepted: 06/16/2023] [Indexed: 06/29/2023]
Abstract
This research provides a detailed analysis of the COVID-19 spread across 14 Latin American countries. Using time-series analysis and epidemic models, we identify diverse outbreak patterns, which seem not to be influenced by geographical location or country size, suggesting the influence of other determining factors. Our study uncovers significant discrepancies between the number recorded COVID-19 cases and the real epidemiological situation, emphasizing the crucial need for accurate data handling and continuous surveillance in managing epidemics. The absence of a clear correlation between the country size and the confirmed cases, as well as with the fatalities, further underscores the multifaceted influences on COVID-19 impact beyond population size. Despite the decreased real-time reproduction number indicating quarantine effectiveness in most countries, we note a resurgence in infection rates upon resumption of daily activities. These insights spotlight the challenge of balancing public health measures with economic and social activities. Our core findings provide novel insights, applicable to guiding epidemic control strategies and informing decision-making processes in combatting the pandemic.
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Affiliation(s)
- Víctor Leiva
- School of Industrial Engineering, Pontificia Universidad Católica de Valparaíso, Valparaíso 2362807, Chile
| | - Esdras Alcudia
- Faculty of Statistics and Informatics, Universidad Veracruzana, Xalapa 91140, Mexico
| | - Julia Montano
- Faculty of Statistics and Informatics, Universidad Veracruzana, Xalapa 91140, Mexico
| | - Cecilia Castro
- Centre of Mathematics, University of Minho, 4710-057 Braga, Portugal
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Punyapornwithaya V, Arjkumpa O, Buamithup N, Kuatako N, Klaharn K, Sansamur C, Jampachaisri K. Forecasting of daily new lumpy skin disease cases in Thailand at different stages of the epidemic using fuzzy logic time series, NNAR, and ARIMA methods. Prev Vet Med 2023; 217:105964. [PMID: 37393704 DOI: 10.1016/j.prevetmed.2023.105964] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 06/08/2023] [Accepted: 06/12/2023] [Indexed: 07/04/2023]
Abstract
Lumpy skin disease (LSD) is an important transboundary disease affecting cattle in numerous countries in various continents. In Thailand, LSD is regarded as a serious threat to the cattle industry. Disease forecasting can assist authorities in formulating prevention and control policies. Therefore, the objective of this study was to compare the performance of time series models in forecasting a potential LSD epidemic in Thailand using nationwide data. For the forecasting of daily new cases, fuzzy time series (FTS), neural network auto-regressive (NNAR), and auto-regressive integrated moving average (ARIMA) models were applied to various datasets representing the different stages of the epidemic. Non-overlapping sliding and expanding window approaches were also employed to train the forecasting models. The results showed that the FTS outperformed other models in five of the seven validation datasets based on various error metrics. The predictive performance of the NNAR and ARIMA models was comparable, with NNAR outperforming ARIMA in some datasets and vice versa. Furthermore, the performance of models built from sliding and expanding window techniques was different. This is the first study to compare the forecasting abilities of the FTS, NNAR, and ARIMA models across multiple phases of the LSD epidemic. Livestock authorities and decision-makers may incorporate the forecasting techniques demonstrated herein into the LSD surveillance system to enhance its functionality and utility.
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Affiliation(s)
- Veerasak Punyapornwithaya
- Department of Veterinary Bioscience and Veterinary Public Health, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai 50100, Thailand; Center of Excellence in Veterinary Public Health, Faculty of Veterinary Medicine, Chiang Mai University, Chiang Mai 50100, Thailand
| | - Orapun Arjkumpa
- Department of Livestock Development, Animal Health Section, The 4th Regional Livestock Office, Khon Kaen 40260, Thailand
| | - Noppawan Buamithup
- Bureau of Disease Control and Veterinary Services, Department of Livestock Development, Bangkok 10400, Thailand
| | - Noppasorn Kuatako
- Bureau of Disease Control and Veterinary Services, Department of Livestock Development, Bangkok 10400, Thailand
| | - Kunnanut Klaharn
- Bureau of Livestock Standards and Certification, Department of Livestock Development, Bangkok 10400, Thailand.
| | - Chalutwan Sansamur
- Akkhraratchakumari Veterinary College, Walailak University, Nakhon Si Thammarat 80161, Thailand
| | - Katechan Jampachaisri
- Department of Mathematics, Faculty of Science, Naresuan University, Phitsanulok 65000, Thailand.
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Sharma S, Gupta YK, Mishra AK. Analysis and Prediction of COVID-19 Multivariate Data Using Deep Ensemble Learning Methods. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:5943. [PMID: 37297547 PMCID: PMC10252939 DOI: 10.3390/ijerph20115943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 05/02/2023] [Accepted: 05/17/2023] [Indexed: 06/12/2023]
Abstract
The global economy has suffered losses as a result of the COVID-19 epidemic. Accurate and effective predictive models are necessary for the governance and readiness of the healthcare system and its resources and, ultimately, for the prevention of the spread of illness. The primary objective of the project is to build a robust, universal method for predicting COVID-19-positive cases. Collaborators will benefit from this while developing and revising their pandemic response plans. For accurate prediction of the spread of COVID-19, the research recommends an adaptive gradient LSTM model (AGLSTM) using multivariate time series data. RNN, LSTM, LASSO regression, Ada-Boost, Light Gradient Boosting and KNN models are also used in the research, which accurately and reliably predict the course of this unpleasant disease. The proposed technique is evaluated under two different experimental conditions. The former uses case studies from India to validate the methodology, while the latter uses data fusion and transfer-learning techniques to reuse data and models to predict the onset of COVID-19. The model extracts important advanced features that influence the COVID-19 cases using a convolutional neural network and predicts the cases using adaptive LSTM after CNN processes the data. The experiment results show that the output of AGLSTM outperforms with an accuracy of 99.81% and requires only a short time for training and prediction.
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Affiliation(s)
- Shruti Sharma
- Department of Computer Science, Banasthali Vidyapith, Tonk 304022, India;
- School of Technology & Management, SVKM’s Narsee Monji Institute of Management Studies (NMIMS), Indore 452005, India
| | - Yogesh Kumar Gupta
- Department of Computer Science, Banasthali Vidyapith, Tonk 304022, India;
| | - Abhinava K. Mishra
- Molecular, Cellular and Developmental Biology Department, University of California Santa Barbara, Santa Barbara, CA 93106, USA
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Guitart A, del Río AF, Periáñez Á, Bellhouse L. Midwifery learning and forecasting: Predicting content demand with user-generated logs. Artif Intell Med 2023; 138:102511. [PMID: 36990589 PMCID: PMC10102717 DOI: 10.1016/j.artmed.2023.102511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 02/02/2023] [Accepted: 02/14/2023] [Indexed: 03/02/2023]
Abstract
Every day, 800 women and 6700 newborns die from complications related to pregnancy or childbirth. A well-trained midwife can prevent most of these maternal and newborn deaths. Data science models together with logs generated by users of online learning applications for midwives can help improve their learning competencies. In this work, we evaluate various forecasting methods to determine the future interest of users for the different types of content available in the Safe Delivery App, a digital training tool for skilled birth attendants, broken down by profession and region. This first attempt at health content demand forecasting for midwifery learning shows that DeepAR can accurately anticipate content demand in operational settings, and could therefore be used to offer users personalized content and to provide an adaptive learning journey.
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Kumar Y, Koul A, Kaur S, Hu YC. Machine Learning and Deep Learning Based Time Series Prediction and Forecasting of Ten Nations' COVID-19 Pandemic. SN COMPUTER SCIENCE 2022; 4:91. [PMID: 36532634 PMCID: PMC9748400 DOI: 10.1007/s42979-022-01493-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 11/03/2022] [Indexed: 12/15/2022]
Abstract
In the paper, the authors investigated and predicted the future environmental circumstances of a COVID-19 to minimize its effects using artificial intelligence techniques. The experimental investigation of COVID-19 instances has been performed in ten countries, including India, the United States, Russia, Argentina, Brazil, Colombia, Italy, Turkey, Germany, and France using machine learning, deep learning, and time series models. The confirmed, deceased, and recovered datasets from January 22, 2020, to May 29, 2021, of Novel COVID-19 cases were considered from the Kaggle COVID dataset repository. The country-wise Exploratory Data Analysis visually represents the active, recovered, closed, and death cases from March 2020 to May 2021. The data are pre-processed and scaled using a MinMax scaler to extract and normalize the features to obtain an accurate prediction rate. The proposed methodology employs Random Forest Regressor, Decision Tree Regressor, K Nearest Regressor, Lasso Regression, Linear Regression, Bayesian Regression, Theilsen Regression, Kernel Ridge Regressor, RANSAC Regressor, XG Boost, Elastic Net Regressor, Facebook Prophet Model, Holt Model, Stacked Long Short-Term Memory, and Stacked Gated Recurrent Units to predict active COVID-19 confirmed, death, and recovered cases. Out of different machine learning, deep learning, and time series models, Random Forest Regressor, Facebook Prophet, and Stacked LSTM outperformed to predict the best results for COVID-19 instances with the lowest root-mean-square and highest R 2 score values.
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Affiliation(s)
- Yogesh Kumar
- Department of Computer Science and Engineering, School of Technology, Pandit Deendayal Energy University, Gandhinagar, Gujarat India
| | - Apeksha Koul
- Department of Computer Engineering, Punjabi University, Patiala, India
| | - Sukhpreet Kaur
- Department of Computer Science and Engineering, Chandigarh Engineering College, Landran, Mohali India
| | - Yu-Chen Hu
- Department of Computer Science and Information Management, Providence University, Taichung, Taiwan, ROC
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Díaz-Lozano M, Guijo-Rubio D, Gutiérrez PA, Gómez-Orellana AM, Túñez I, Ortigosa-Moreno L, Romanos-Rodríguez A, Padillo-Ruiz J, Hervás-Martínez C. COVID-19 contagion forecasting framework based on curve decomposition and evolutionary artificial neural networks: A case study in Andalusia, Spain. EXPERT SYSTEMS WITH APPLICATIONS 2022; 207:117977. [PMID: 35784094 PMCID: PMC9235375 DOI: 10.1016/j.eswa.2022.117977] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Revised: 06/17/2022] [Accepted: 06/22/2022] [Indexed: 05/09/2023]
Abstract
Many types of research have been carried out with the aim of combating the COVID-19 pandemic since the first outbreak was detected in Wuhan, China. Anticipating the evolution of an outbreak helps to devise suitable economic, social and health care strategies to mitigate the effects of the virus. For this reason, predicting the SARS-CoV-2 transmission rate has become one of the most important and challenging problems of the past months. In this paper, we apply a two-stage mid and long-term forecasting framework to the epidemic situation in eight districts of Andalusia, Spain. First, an analytical procedure is performed iteratively to fit polynomial curves to the cumulative curve of contagions. Then, the extracted information is used for estimating the parameters and structure of an evolutionary artificial neural network with hybrid architectures (i.e., with different basis functions for the hidden nodes) while considering single and simultaneous time horizon estimations. The results obtained demonstrate that including polynomial information extracted during the training stage significantly improves the mid- and long-term estimations in seven of the eight considered districts. The increase in average accuracy (for the joint mid- and long-term horizon forecasts) is 37.61% and 35.53% when considering the single and simultaneous forecast approaches, respectively.
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Affiliation(s)
| | - David Guijo-Rubio
- Department of Computer Science and Numerical Analysis, University of Cordoba, 14071 Cordoba, Spain
| | - Pedro Antonio Gutiérrez
- Department of Computer Science and Numerical Analysis, University of Cordoba, 14071 Cordoba, Spain
| | | | - Isaac Túñez
- Maimonides Institute for Biomedical Research of Córdoba (IMIBIC), 14071 Córdoba, Spain
| | | | | | - Javier Padillo-Ruiz
- University of Sevilla. University Hospital Virgen del Rocío, 41013 Sevilla, Spain
| | - César Hervás-Martínez
- Department of Computer Science and Numerical Analysis, University of Cordoba, 14071 Cordoba, Spain
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13
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McAndrew T, Codi A, Cambeiro J, Besiroglu T, Braun D, Chen E, De Cèsaris LEU, Luk D. Chimeric forecasting: combining probabilistic predictions from computational models and human judgment. BMC Infect Dis 2022; 22:833. [PMID: 36357829 PMCID: PMC9648897 DOI: 10.1186/s12879-022-07794-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Accepted: 10/12/2022] [Indexed: 11/12/2022] Open
Abstract
Forecasts of the trajectory of an infectious agent can help guide public health decision making. A traditional approach to forecasting fits a computational model to structured data and generates a predictive distribution. However, human judgment has access to the same data as computational models plus experience, intuition, and subjective data. We propose a chimeric ensemble-a combination of computational and human judgment forecasts-as a novel approach to predicting the trajectory of an infectious agent. Each month from January, 2021 to June, 2021 we asked two generalist crowds, using the same criteria as the COVID-19 Forecast Hub, to submit a predictive distribution over incident cases and deaths at the US national level either two or three weeks into the future and combined these human judgment forecasts with forecasts from computational models submitted to the COVID-19 Forecasthub into a chimeric ensemble. We find a chimeric ensemble compared to an ensemble including only computational models improves predictions of incident cases and shows similar performance for predictions of incident deaths. A chimeric ensemble is a flexible, supportive public health tool and shows promising results for predictions of the spread of an infectious agent.
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Affiliation(s)
| | - Allison Codi
- College of Health, Lehigh University, Bethlehem, PA, USA
| | - Juan Cambeiro
- Metaculus, Santa Cruz, CA, USA
- Department of Epidemiology, Mailman School of Public Health, Columbia University, New York, USA
| | - Tamay Besiroglu
- Metaculus, Santa Cruz, CA, USA
- Massachusetts Institute of Technology, Cambridge, MA, USA
| | - David Braun
- Department of Psychology, Lehigh University, Bethlehem, PA, USA
| | - Eva Chen
- Good Judgment Inc., New York, NY, USA
| | | | - Damon Luk
- College of Health, Lehigh University, Bethlehem, PA, USA
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14
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Application of machine learning for multi-community COVID-19 outbreak predictions with wastewater surveillance. PLoS One 2022; 17:e0277154. [DOI: 10.1371/journal.pone.0277154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 10/20/2022] [Indexed: 11/12/2022] Open
Abstract
The potential of wastewater-based epidemiology (WBE) as a surveillance and early warning tool for the COVID-19 outbreak has been demonstrated. For areas with limited testing capacity, wastewater surveillance can provide information on the disease dynamic at a community level. A predictive model is a key to generating quantitative estimates of the infected population. Modeling longitudinal wastewater data can be challenging as biomarkers in wastewater are susceptible to variations caused by multiple factors associated with the wastewater matrix and the sewersheds characteristics. As WBE is an emerging trend, the model should be able to address the uncertainties of wastewater from different sewersheds. We proposed exploiting machine learning and deep learning techniques, which are supported by the growing WBE data. In this article, we reviewed the existing predictive models, among which the emerging machine learning/deep learning models showed great potential. However, most models are built for individual sewersheds with few features extracted from the wastewater. To fulfill the research gap, we compared different time-series and non-time-series models for their short-term predictive performance of COVID-19 cases in 9 diverse sewersheds. The time-series models, long short-term memory (LSTM) and Prophet, outcompeted the non-time-series models. Besides viral (SARS-CoV-2) loads and location identity, domain-specific features like biochemical parameters of wastewater, geographical parameters of the sewersheds, and some socioeconomic parameters of the communities can contribute to the models. With proper feature engineering and hyperparameter tuning, we believe machine learning models like LSTM can be a feasible solution for the COVID-19 trend prediction via WBE. Overall, this is a proof-of-concept study on the application of machine learning in COVID-19 WBE. Future studies are needed to deploy and maintain the model in more real-world applications.
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15
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Lamsal R, Harwood A, Read MR. Twitter conversations predict the daily confirmed COVID-19 cases. Appl Soft Comput 2022; 129:109603. [PMID: 36092470 PMCID: PMC9444159 DOI: 10.1016/j.asoc.2022.109603] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 08/03/2022] [Accepted: 08/22/2022] [Indexed: 12/19/2022]
Abstract
As of writing this paper, COVID-19 (Coronavirus disease 2019) has spread to more than 220 countries and territories. Following the outbreak, the pandemic's seriousness has made people more active on social media, especially on the microblogging platforms such as Twitter and Weibo. The pandemic-specific discourse has remained on-trend on these platforms for months now. Previous studies have confirmed the contributions of such socially generated conversations towards situational awareness of crisis events. The early forecasts of cases are essential to authorities to estimate the requirements of resources needed to cope with the outgrowths of the virus. Therefore, this study attempts to incorporate the public discourse in the design of forecasting models particularly targeted for the steep-hill region of an ongoing wave. We propose a sentiment-involved topic-based latent variables search methodology for designing forecasting models from publicly available Twitter conversations. As a use case, we implement the proposed methodology on Australian COVID-19 daily cases and Twitter conversations generated within the country. Experimental results: (i) show the presence of latent social media variables that Granger-cause the daily COVID-19 confirmed cases, and (ii) confirm that those variables offer additional prediction capability to forecasting models. Further, the results show that the inclusion of social media variables introduces 48.83%-51.38% improvements on RMSE over the baseline models. We also release the large-scale COVID-19 specific geotagged global tweets dataset, MegaGeoCOV, to the public anticipating that the geotagged data of this scale would aid in understanding the conversational dynamics of the pandemic through other spatial and temporal contexts.
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Affiliation(s)
- Rabindra Lamsal
- School of Computing and Information Systems, The University of Melbourne, Parkville, Melbourne, 3010, Victoria, Australia
| | - Aaron Harwood
- School of Computing and Information Systems, The University of Melbourne, Parkville, Melbourne, 3010, Victoria, Australia
| | - Maria Rodriguez Read
- School of Computing and Information Systems, The University of Melbourne, Parkville, Melbourne, 3010, Victoria, Australia
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16
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Kamalov F, Rajab K, Cherukuri AK, Elnagar A, Safaraliev M. Deep learning for Covid-19 forecasting: State-of-the-art review. Neurocomputing 2022; 511:142-154. [PMID: 36097509 PMCID: PMC9454152 DOI: 10.1016/j.neucom.2022.09.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 07/03/2022] [Accepted: 09/04/2022] [Indexed: 11/21/2022]
Abstract
The Covid-19 pandemic has galvanized scientists to apply machine learning methods to help combat the crisis. Despite the significant amount of research there exists no comprehensive survey devoted specifically to examining deep learning methods for Covid-19 forecasting. In this paper, we fill the gap in the literature by reviewing and analyzing the current studies that use deep learning for Covid-19 forecasting. In our review, all published papers and preprints, discoverable through Google Scholar, for the period from Apr 1, 2020 to Feb 20, 2022 which describe deep learning approaches to forecasting Covid-19 were considered. Our search identified 152 studies, of which 53 passed the initial quality screening and were included in our survey. We propose a model-based taxonomy to categorize the literature. We describe each model and highlight its performance. Finally, the deficiencies of the existing approaches are identified and the necessary improvements for future research are elucidated. The study provides a gateway for researchers who are interested in forecasting Covid-19 using deep learning.
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17
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Didi Y, Walha A, Ben Halima M, Wali A. COVID-19 Outbreak Forecasting Based on Vaccine Rates and Tweets Classification. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:4535541. [PMID: 36337272 PMCID: PMC9633186 DOI: 10.1155/2022/4535541] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 07/17/2022] [Accepted: 10/05/2022] [Indexed: 09/08/2024]
Abstract
The spread of COVID-19 has affected more than 200 countries and has caused serious public health concerns. The infected cases are on the increase despite the effectiveness of the vaccines. An efficient and quick surveillance system for COVID-19 can help healthcare decision-makers to contain the virus spread. In this study, we developed a novel framework using machine learning (ML) models capable of detecting COVID-19 accurately at an early stage. To estimate the risks, many models use social networking sites (SNSs) in tracking the disease outbreak. Twitter is one of the SNSs that is widely used to create an efficient resource for disease real-time analysis and can provide an early warning for health officials. We introduced a pipeline framework of outbreak prediction that incorporates a first-step hybrid method of word embedding for tweet classification. In the second step, we considered the classified tweets with external features such as vaccine rate associated with infected cases passed to machine learning algorithms for daily predictions. Thus, we applied different machine learning models such as the SVM, RF, and LR for classification and the LSTM, Prophet, and SVR for prediction. For the hybrid word embedding techniques, we applied TF-IDF, FastText, and Glove and a combination of the three features to enhance the classification. Furthermore, to improve the forecast performance, we incorporated vaccine data as input together with tweets and confirmed cases. The models' performance is more than 80% accurate, which shows the reliability of the proposed study.
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Affiliation(s)
- Y. Didi
- Department of Computer Science, Umm Al-Qura University, Makkah 24243, Saudi Arabia
- REsearch Groups in Intelligent Machines (REGIM-Lab), National Engineering School of Sfax, University of Sfax, Sfax 3038, Tunisia
| | - A. Walha
- Department of Computer Science, Umm Al-Qura University, Makkah 24243, Saudi Arabia
- REsearch Groups in Intelligent Machines (REGIM-Lab), National Engineering School of Sfax, University of Sfax, Sfax 3038, Tunisia
| | - M. Ben Halima
- REsearch Groups in Intelligent Machines (REGIM-Lab), National Engineering School of Sfax, University of Sfax, Sfax 3038, Tunisia
| | - A. Wali
- REsearch Groups in Intelligent Machines (REGIM-Lab), National Engineering School of Sfax, University of Sfax, Sfax 3038, Tunisia
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18
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Lumpy Skin Disease Outbreaks in Africa, Europe, and Asia (2005-2022): Multiple Change Point Analysis and Time Series Forecast. Viruses 2022; 14:v14102203. [PMID: 36298758 PMCID: PMC9611638 DOI: 10.3390/v14102203] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 10/01/2022] [Accepted: 10/05/2022] [Indexed: 11/06/2022] Open
Abstract
LSD is an important transboundary disease affecting the cattle industry worldwide. The objectives of this study were to determine trends and significant change points, and to forecast the number of LSD outbreak reports in Africa, Europe, and Asia. LSD outbreak report data (January 2005 to January 2022) from the World Organization for Animal Health were analyzed. We determined statistically significant change points in the data using binary segmentation, and forecast the number of LSD reports using auto-regressive moving average (ARIMA) and neural network auto-regressive (NNAR) models. Four significant change points were identified for each continent. The year between the third and fourth change points (2016-2019) in the African data was the period with the highest mean of number of LSD reports. All change points of LSD outbreaks in Europe corresponded with massive outbreaks during 2015-2017. Asia had the highest number of LSD reports in 2019 after the third detected change point in 2018. For the next three years (2022-2024), both ARIMA and NNAR forecast a rise in the number of LSD reports in Africa and a steady number in Europe. However, ARIMA predicts a stable number of outbreaks in Asia, whereas NNAR predicts an increase in 2023-2024. This study provides information that contributes to a better understanding of the epidemiology of LSD.
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19
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Ryu S, Nam HJ, Jhon M, Lee JY, Kim JM, Kim SW. Trends in suicide deaths before and after the COVID-19 outbreak in Korea. PLoS One 2022; 17:e0273637. [PMID: 36094911 PMCID: PMC9467344 DOI: 10.1371/journal.pone.0273637] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 08/10/2022] [Indexed: 12/03/2022] Open
Abstract
We investigated the effect of the coronavirus disease-2019 (COVID-19) pandemic on suicide trends in Korea via a time-series analysis. We used Facebook Prophet to generate forecasting models based on the monthly numbers of suicide deaths in Korea between 1997 and 2018, validated the models by comparison with the 2019 numbers, and predicted the numbers of suicides in 2020. We compared the expected and observed numbers of suicides during the COVID-19 pandemic. The total numbers of suicides during the COVID-19 pandemic did not deviate from projections based on the pre-pandemic period. However, the number of suicides among women and those under the age of 34 years significantly exceeded the expected level. The COVID-19 pandemic did not increase the overall suicide rate significantly. However, suicides among women and young people increased, suggesting that the pandemic might drive more members of these groups to suicide. Further studies are needed to verify the long-term impact of the COVID-19 pandemic on suicide.
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Affiliation(s)
- Seunghyong Ryu
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Korea
| | - Hee Jung Nam
- Department of Psychiatry, Seoul Medical Center, Seoul, Korea
| | - Min Jhon
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Korea
| | - Ju-Yeon Lee
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Korea
- Mindlink, Gwangju Bukgu Mental Health Center, Gwangju, Korea
| | - Jae-Min Kim
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Korea
| | - Sung-Wan Kim
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Korea
- Mindlink, Gwangju Bukgu Mental Health Center, Gwangju, Korea
- * E-mail:
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20
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Jain P, Sahu S. Prediction and forecasting of worldwide corona virus (COVID-19) outbreak using time series and machine learning. CONCURRENCY AND COMPUTATION : PRACTICE & EXPERIENCE 2022; 34:e7286. [PMID: 36247093 PMCID: PMC9539277 DOI: 10.1002/cpe.7286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 06/07/2022] [Accepted: 07/15/2022] [Indexed: 06/16/2023]
Abstract
How will the newly discovered coronavirus (COVID-19) affect the world and what will be its global impact? For answering this question, we will require a prediction of overall recoveries and fatalities, as well as a reliable prognosis of coronavirus cases. Predicting, however, requires an ample total of past data related to it. On any particular day, the prediction is unclear since events in the future rarely repeat themselves the way that they did in the past. Furthermore, forecasts and predictions are determined by the absolute interests, accuracy of the data, and prophesied variables. In addition, psychological factors play an enormous role in how people perceive and react to the danger from the disease and therefore the fear that it is going to affect them personally. This research paper advances an unbiased method for predicting the increase of the COVID-19 employing a simple, but powerful method to do so. Assumed that the data are accurate and reliable which the longer term will still follow an equivalent disease pattern, our projections intimate with a large association. Within the COVID-19 cases were documented, in contingency, there is a steady increase. The hazards are far away from symmetric, as underestimating a pandemic's spread and failing to do enough to prevent it is far a lot worse than overspending and being too cautious when it will not be needed. This paper illustrates the timeline of a live forecasting study with huge implied implications for devising and decision-making and gives unbiased predictions on COVID-19 confirmed cases, recovered cases, deaths, and ongoing cases are shown on a continental map using data science and machine learning (ML) approaches. Utilizing these ML-based techniques, the proposed system predicts the accurate COVID-19 cases and gives better performance.
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Affiliation(s)
- Priyank Jain
- Indian Institute of Information TechnologyBhopalMadhya PradeshIndia
| | - Shriya Sahu
- Atal Bihari Vajpayee UniversityBilaspurChhattisgarhIndia
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21
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Lin C, Cheng W, Liu X, Li H, Song Y. The global, regional, national burden of laryngeal cancer and its attributable risk factors (1990-2019) and predictions to 2035. Eur J Cancer Care (Engl) 2022; 31:e13689. [PMID: 35980023 DOI: 10.1111/ecc.13689] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2022] [Revised: 06/28/2022] [Accepted: 08/02/2022] [Indexed: 01/22/2023]
Abstract
OBJECTIVE We aim to report the incidence, mortality and disability-adjusted life years (DALYs) between 1990 and 2019 and provide predictions to 2035. METHODS We use estimates from Global Burden of Disease, Injuries and Risk Factors Study 2019 to analyse the incidence, mortality and DALYs. RESULTS In 2019, there were more than 209,149 incidence cases, with age-standardised rates (ASRs) of 2.5. Laryngeal cancer accounted for 123,356 death cases, with ASRs of 1.5. Laryngeal cancer was also responsible for 3.26 million (3,034,634 to 3,511,354) DALYs, with ASRs of 38.8 (36.1 to 41.8). In 2019, Central Europe had the highest age-standardised incidence rate. At the national level, the highest incidence rate was observed in Mongolia. Total number and rate were significantly higher among males than females across all age groups. DALYs were attributable to Alcohol use, Smoking, Occupational exposure to sulfuric acid and asbestos. The age-standardised incidence rates in seven GBD regions and 59 countries are projected to increase between 2019 and 2035. CONCLUSIONS Despite the current and predicted decline in age-standardised incidence globally, the absolute number of estimates continue to increase. Prevention programmes should concentrate on modifiable risk factors, especially among the males across all age groups.
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Affiliation(s)
- Changwei Lin
- Department of Gastrointestinal Surgery, The Third Xiangya Hospital of Central South University, Changsha, China.,School of Life Sciences, Central South University, Changsha, China
| | - Wenwei Cheng
- Medical Department, The Third Xiangya Hospital of Central South University, Changsha, China.,Xiangya School of Public Health, Central South University, Changsha, China
| | - Xiajing Liu
- Graduate School of Guilin Medical University, Guilin, China
| | - Heqing Li
- Department of Otolaryngology-Head Neck Surgery, The Third Xiangya Hospital of Central South University, Changsha, China
| | - Yexun Song
- Department of Otolaryngology-Head Neck Surgery, The Third Xiangya Hospital of Central South University, Changsha, China
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22
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Kumar S, Kumar GS, Maitra SS, Malý P, Bharadwaj S, Sharma P, Dwivedi VD. Viral informatics: bioinformatics-based solution for managing viral infections. Brief Bioinform 2022; 23:6659740. [PMID: 35947964 DOI: 10.1093/bib/bbac326] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Revised: 06/26/2022] [Accepted: 07/18/2022] [Indexed: 11/13/2022] Open
Abstract
Several new viral infections have emerged in the human population and establishing as global pandemics. With advancements in translation research, the scientific community has developed potential therapeutics to eradicate or control certain viral infections, such as smallpox and polio, responsible for billions of disabilities and deaths in the past. Unfortunately, some viral infections, such as dengue virus (DENV) and human immunodeficiency virus-1 (HIV-1), are still prevailing due to a lack of specific therapeutics, while new pathogenic viral strains or variants are emerging because of high genetic recombination or cross-species transmission. Consequently, to combat the emerging viral infections, bioinformatics-based potential strategies have been developed for viral characterization and developing new effective therapeutics for their eradication or management. This review attempts to provide a single platform for the available wide range of bioinformatics-based approaches, including bioinformatics methods for the identification and management of emerging or evolved viral strains, genome analysis concerning the pathogenicity and epidemiological analysis, computational methods for designing the viral therapeutics, and consolidated information in the form of databases against the known pathogenic viruses. This enriched review of the generally applicable viral informatics approaches aims to provide an overview of available resources capable of carrying out the desired task and may be utilized to expand additional strategies to improve the quality of translation viral informatics research.
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Affiliation(s)
- Sanjay Kumar
- School of Biotechnology, Jawaharlal Nehru University, New Delhi, India.,Center for Bioinformatics, Computational and Systems Biology, Pathfinder Research and Training Foundation, Greater Noida, India
| | - Geethu S Kumar
- Department of Life Science, School of Basic Science and Research, Sharda University, Greater Noida, Uttar Pradesh, India.,Center for Bioinformatics, Computational and Systems Biology, Pathfinder Research and Training Foundation, Greater Noida, India
| | | | - Petr Malý
- Laboratory of Ligand Engineering, Institute of Biotechnology of the Czech Academy of Sciences v.v.i., BIOCEV Research Center, Vestec, Czech Republic
| | - Shiv Bharadwaj
- Laboratory of Ligand Engineering, Institute of Biotechnology of the Czech Academy of Sciences v.v.i., BIOCEV Research Center, Vestec, Czech Republic
| | - Pradeep Sharma
- Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India
| | - Vivek Dhar Dwivedi
- Center for Bioinformatics, Computational and Systems Biology, Pathfinder Research and Training Foundation, Greater Noida, India.,Institute of Advanced Materials, IAAM, 59053 Ulrika, Sweden
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23
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Perone G. Comparison of ARIMA, ETS, NNAR, TBATS and hybrid models to forecast the second wave of COVID-19 hospitalizations in Italy. THE EUROPEAN JOURNAL OF HEALTH ECONOMICS : HEPAC : HEALTH ECONOMICS IN PREVENTION AND CARE 2022; 23:917-940. [PMID: 34347175 PMCID: PMC8332000 DOI: 10.1007/s10198-021-01347-4] [Citation(s) in RCA: 27] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 07/01/2021] [Indexed: 05/13/2023]
Abstract
The coronavirus disease (COVID-19) is a severe, ongoing, novel pandemic that emerged in Wuhan, China, in December 2019. As of January 21, 2021, the virus had infected approximately 100 million people, causing over 2 million deaths. This article analyzed several time series forecasting methods to predict the spread of COVID-19 during the pandemic's second wave in Italy (the period after October 13, 2020). The autoregressive moving average (ARIMA) model, innovations state space models for exponential smoothing (ETS), the neural network autoregression (NNAR) model, the trigonometric exponential smoothing state space model with Box-Cox transformation, ARMA errors, and trend and seasonal components (TBATS), and all of their feasible hybrid combinations were employed to forecast the number of patients hospitalized with mild symptoms and the number of patients hospitalized in the intensive care units (ICU). The data for the period February 21, 2020-October 13, 2020 were extracted from the website of the Italian Ministry of Health ( www.salute.gov.it ). The results showed that (i) hybrid models were better at capturing the linear, nonlinear, and seasonal pandemic patterns, significantly outperforming the respective single models for both time series, and (ii) the numbers of COVID-19-related hospitalizations of patients with mild symptoms and in the ICU were projected to increase rapidly from October 2020 to mid-November 2020. According to the estimations, the necessary ordinary and intensive care beds were expected to double in 10 days and to triple in approximately 20 days. These predictions were consistent with the observed trend, demonstrating that hybrid models may facilitate public health authorities' decision-making, especially in the short-term.
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Affiliation(s)
- Gaetano Perone
- Department of Management, Economics and Quantitative Methods, University of Bergamo, via dei Caniana 2, 24127, Bergamo, Italy.
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24
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Prasad VK, Bhattacharya P, Bhavsar M, Verma A, Tanwar S, Sharma G, Bokoro PN, Sharma R. ABV-CoViD: An Ensemble Forecasting Model to Predict Availability of Beds and Ventilators for COVID-19 Like Pandemics. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2022; 10:74131-74151. [PMID: 36345376 PMCID: PMC9423030 DOI: 10.1109/access.2022.3190497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/24/2022] [Accepted: 07/10/2022] [Indexed: 06/16/2023]
Abstract
Recently, healthcare stakeholders have orchestrated steps to strengthen and curb the COVID-19 wave. There has been a surge in vaccinations to curb the virus wave, but it is crucial to strengthen our healthcare resources to fight COVID-19 and like pandemics. Recent researchers have suggested effective forecasting models for COVID-19 transmission rate, spread, and the number of positive cases, but the focus on healthcare resources to meet the current spread is not discussed. Motivated from the gap, in this paper, we propose a scheme, ABV-CoViD (Availibility of Beds and Ventilators for COVID-19 patients), that forms an ensemble forecasting model to predict the availability of beds and ventilators (ABV) for the COVID-19 patients. The scheme considers a region-wise demarcation for the allotment of beds and ventilators (BV), termed resources, based on region-wise ABV and COVID-19 positive patients (inside the hospitals occupying the BV resource). We consider an integration of artificial neural network (ANN) and auto-regressive integrated neural network (ARIMA) model to address both the linear and non-linear dependencies. We also consider the effective wave spread of COVID-19 on external patients (not occupying the BV resources) through a [Formula: see text]- ARNN model, which gives us long-term complex dependencies of BV resources in the future time window. We have considered the COVID-19 healthcare dataset on 3 USA regions (Illinois, Michigan, and Indiana) for testing our ensemble forecasting scheme from January 2021 to May 2022. We evaluated our scheme in terms of statistical performance metrics and validated that ensemble methods have higher accuracy. In simulation, for linear modelling, we considered the [Formula: see text] model, and [Formula: see text] model for ANN modelling. We considered the [Formula: see text](12,6) forecasting. On a population of 2,93,90,897, the obtained mean absolute error (MAE) on average for 3 regions is 170.5514. The average root means square error (RMSE) of [Formula: see text]-ARNN is 333.18, with an accuracy of 98.876%, which shows the scheme's efficacy in ABV measurement over conventional and manual resource allocation schemes.
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Affiliation(s)
- Vivek Kumar Prasad
- Department of Computer Science and EngineeringInstitute of Technology, Nirma UniversityAhmedabadGujarat382481India
| | - Pronaya Bhattacharya
- Department of Computer Science and EngineeringInstitute of Technology, Nirma UniversityAhmedabadGujarat382481India
| | - Madhuri Bhavsar
- Department of Computer Science and EngineeringInstitute of Technology, Nirma UniversityAhmedabadGujarat382481India
| | - Ashwin Verma
- Department of Computer Science and EngineeringInstitute of Technology, Nirma UniversityAhmedabadGujarat382481India
| | - Sudeep Tanwar
- Department of Computer Science and EngineeringInstitute of Technology, Nirma UniversityAhmedabadGujarat382481India
| | - Gulshan Sharma
- Department of Electrical Engineering TechnologyUniversity of JohannesburgJohannesburgGauteng2006South Africa
| | - Pitshou N. Bokoro
- Department of Electrical Engineering TechnologyUniversity of JohannesburgJohannesburgGauteng2006South Africa
| | - Ravi Sharma
- Centre for Inter-Disciplinary Research and InnovationUniversity of Petroleum and Energy StudiesDehradun248001India
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A Review of the Potential of Artificial Intelligence Approaches to Forecasting COVID-19 Spreading. AI 2022. [DOI: 10.3390/ai3020028] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
The spread of SARS-CoV-2 can be considered one of the most complicated patterns with a large number of uncertainties and nonlinearities. Therefore, analysis and prediction of the distribution of this virus are one of the most challenging problems, affecting the planning and managing of its impacts. Although different vaccines and drugs have been proved, produced, and distributed one after another, several new fast-spreading SARS-CoV-2 variants have been detected. This is why numerous techniques based on artificial intelligence (AI) have been recently designed or redeveloped to forecast these variants more effectively. The focus of such methods is on deep learning (DL) and machine learning (ML), and they can forecast nonlinear trends in epidemiological issues appropriately. This short review aims to summarize and evaluate the trustworthiness and performance of some important AI-empowered approaches used for the prediction of the spread of COVID-19. Sixty-five preprints, peer-reviewed papers, conference proceedings, and book chapters published in 2020 were reviewed. Our criteria to include or exclude references were the performance of these methods reported in the documents. The results revealed that although methods under discussion in this review have suitable potential to predict the spread of COVID-19, there are still weaknesses and drawbacks that fall in the domain of future research and scientific endeavors.
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Gadó K, Kovács AK, Domján G, Nagy ZZ, Bednárik GD. COVID-19 and the elderly. Physiol Int 2022; 109:177-185. [PMID: 35575987 DOI: 10.1556/2060.2022.00203] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2021] [Revised: 02/14/2022] [Accepted: 03/01/2022] [Indexed: 02/18/2024]
Abstract
COVID-19 has become a great burden of the world in respect of health care, social, and economical reason. Several million people died worldwide so far and more and more mutants are generated and spread. Older people with co-morbidities and frailty syndrome have a significantly higher risk to get the infection and also higher the risk of a more serious disease process. Mortality of COVID-19 is also higher in case of geriatric patients. In this review we attempted to summarize the factors of the higher susceptibility for more serious disease, what actions need to be taken for defending older patients and also special aspects of clinical presentation including ophthalmic symptoms.
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Affiliation(s)
- Klara Gadó
- 1 Department of Clinical Studies, Faculty of Health Sciences, Semmelweis University, Budapest, Hungary
- 2 Department of Geriatrics and Center of Nursing Sciences, Faculty of Health Sciences, Semmelweis University, Budapest, Hungary
| | - Aranka Katalin Kovács
- 1 Department of Clinical Studies, Faculty of Health Sciences, Semmelweis University, Budapest, Hungary
| | - Gyula Domján
- 1 Department of Clinical Studies, Faculty of Health Sciences, Semmelweis University, Budapest, Hungary
| | - Zoltán Zsolt Nagy
- 3 Department of Ophthalmology, Faculty of Medicine, Semmelweis University, Budapest, Hungary
- 4 Department of Clinical Ophthalmology, Faculty of Health Sciences, Semmelweis University, Budapest, Hungary
| | - Gabriella Dörnyei Bednárik
- 5 Department of Morphology and Physiotherapy, Faculty of Health Sciences, Semmelweis University, Budapest, Hungary
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Abstract
Complex phenomena have some common characteristics, such as nonlinearity, complexity, and uncertainty. In these phenomena, components typically interact with each other and a part of the system may affect other parts or vice versa. Accordingly, the human brain, the Earth’s global climate, the spreading of viruses, the economic organizations, and some engineering systems such as the transportation systems and power grids can be categorized into these phenomena. Since both analytical approaches and AI methods have some specific characteristics in solving complex problems, a combination of these techniques can lead to new hybrid methods with considerable performance. This is why several types of research have recently been conducted to benefit from these combinations to predict the spreading of COVID-19 and its dynamic behavior. In this review, 80 peer-reviewed articles, book chapters, conference proceedings, and preprints with a focus on employing hybrid methods for forecasting the spreading of COVID-19 published in 2020 have been aggregated and reviewed. These documents have been extracted from Google Scholar and many of them have been indexed on the Web of Science. Since there were many publications on this topic, the most relevant and effective techniques, including statistical models and deep learning (DL) or machine learning (ML) approach, have been surveyed in this research. The main aim of this research is to describe, summarize, and categorize these effective techniques considering their restrictions to be used as trustable references for scientists, researchers, and readers to make an intelligent choice to use the best possible method for their academic needs. Nevertheless, considering the fact that many of these techniques have been used for the first time and need more evaluations, we recommend none of them as an ideal way to be used in their project. Our study has shown that these methods can hold the robustness and reliability of statistical methods and the power of computation of DL ones.
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Haq I, Hossain MI, Saleheen AAS, Nayan MIH, Mila MS. Prediction of COVID-19 Pandemic in Bangladesh: Dual Application of Susceptible-Infective-Recovered (SIR) and Machine Learning Approach. Interdiscip Perspect Infect Dis 2022; 2022:8570089. [PMID: 35497651 PMCID: PMC9041159 DOI: 10.1155/2022/8570089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 04/12/2022] [Indexed: 11/17/2022] Open
Abstract
The outbreak of COVID-19 is a global problem today, and, to reduce infectious cases and increase recovered cases, it is relevant to estimate the future movement and pattern of the disease. To identify the hotspot for COVID-19 in Bangladesh, we performed a cluster analysis based on the hierarchical k-means approach. A well-known epidemiological model named "susceptible-infectious-recovered (SIR)" and an additive regression model named "Facebook PROPHET Procedure" were used to predict the future direction of COVID-19 using data from IEDCR. Here we compare the results of the optimized SIR model and a well-known machine learning algorithm (PROPHET algorithm) for the forecasting trend of the COVID-19 pandemic. The result of the cluster analysis demonstrates that Dhaka city is now a hotspot for the COVID-19 pandemic. The basic reproduction ratio value was 2.1, which indicates that the infection rate would be greater than the recovery rate. In terms of the SIR model, the result showed that the virus might be slightly under control only after August 2022. Furthermore, the PROPHET algorithm observed an altered result from SIR, implying that all confirmed, death, and recovered cases in Bangladesh are increasing on a daily basis. As a result, it appears that the PROPHET algorithm is appropriate for pandemic data with a growing trend. Based on the findings, the study recommended that the pandemic is not under control and ensured that if Bangladesh continues the current pattern of infectious rate, the spread of the pandemic in Bangladesh next year will increase.
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Affiliation(s)
- Iqramul Haq
- Department of Agricultural Statistics, Sher-e-Bangla Agricultural University, Dhaka 1207, Bangladesh
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29
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Mohan S, A J, Abugabah A, M A, Kumar Singh S, kashif Bashir A, Sanzogni L. An approach to forecast impact of Covid-19 using supervised machine learning model. SOFTWARE: PRACTICE & EXPERIENCE 2022; 52:824-840. [PMID: 34230701 PMCID: PMC8250688 DOI: 10.1002/spe.2969] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 02/15/2021] [Accepted: 02/22/2021] [Indexed: 05/11/2023]
Abstract
The Covid-19 pandemic has emerged as one of the most disquieting worldwide public health emergencies of the 21st century and has thrown into sharp relief, among other factors, the dire need for robust forecasting techniques for disease detection, alleviation as well as prevention. Forecasting has been one of the most powerful statistical methods employed the world over in various disciplines for detecting and analyzing trends and predicting future outcomes based on which timely and mitigating actions can be undertaken. To that end, several statistical methods and machine learning techniques have been harnessed depending upon the analysis desired and the availability of data. Historically speaking, most predictions thus arrived at have been short term and country-specific in nature. In this work, multimodel machine learning technique is called EAMA for forecasting Covid-19 related parameters in the long-term both within India and on a global scale have been proposed. This proposed EAMA hybrid model is well-suited to predictions based on past and present data. For this study, two datasets from the Ministry of Health & Family Welfare of India and Worldometers, respectively, have been exploited. Using these two datasets, long-term data predictions for both India and the world have been outlined, and observed that predicted data being very similar to real-time values. The experiment also conducted for statewise predictions of India and the countrywise predictions across the world and it has been included in the Appendix.
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Affiliation(s)
- Senthilkumar Mohan
- School of Information Technology and EngineeringVellore Institute of TechnologyVelloreIndia
| | - John A
- School of Computing Science and EngineeringGalgotias UniversityNoidaIndia
| | - Ahed Abugabah
- College of Technological InnovationZayed UniversityAbu DhabiUnited Arab Emirates
| | - Adimoolam M
- School of Computer Science and EngineeringSaveetha UniversityChennai602105India
| | - Shubham Kumar Singh
- Luddy School of Informatics and EngineeringIndiana UniversityBloomingtonIndianaUSA
| | - Ali kashif Bashir
- Department of Computing and Mathematics Manchester Metropolitan UniversityManchesterUK
- School of Electrical Engineering and Computer ScienceNational University of Science and Technology (NUST)IslamabadPakistan
| | - Louis Sanzogni
- Department of Business Strategy and InnovationGriffith UniversityBrisbaneAustralia
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Forecasting of SPI and SRI Using Multiplicative ARIMA under Climate Variability in a Mediterranean Region: Wadi Ouahrane Basin, Algeria. CLIMATE 2022. [DOI: 10.3390/cli10030036] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Water resources have always been a major concern, particularly in arid and semiarid parts of the world. Low precipitation and its uneven distribution in Algeria, along with fast population and agriculture activity increase and, particularly, recent droughts, have made water availability one of the country’s most pressing issues. The objectives of the studies reported in this article are to investigate and forecast the meteorological and hydrological drought in Wadi Ouahrane basin (270 km2) using linear stochastic models known as Autoregressive Integrated Moving Average (ARIMA) and multiplicative Seasonal Autoregressive Integrated Moving Average (SARIMA). In particular, data from 6 precipitation stations and 1 hydrometric station for the period 1972–2018 were used to evaluate the Standardized Precipitation Index (SPI) and the Standardized Runoff Index (SRI) for 12 months. Then, the multiplicative ARIMA model was applied to forecasting drought based on SPI and SRI. As a result, the ARIMA model (1,0,1)(0,0,1)12 for SPI and (1,0,1)(1,0,1)12 for SRI were shown to be the best models for drought forecast. In fact, both models exhibited high quality for SPI and SRI of 0.97 and 0.51 for 1-month and 12-month lead time, respectively, based on validation R2. In general, prediction skill decreases with increase in lead time. The models can be used with reasonable accuracy to forecast droughts with up to 12 months of lead time.
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31
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Xiang L, Ma S, Yu L, Wang W, Yin Z. Modeling the Global Dynamic Contagion of COVID-19. Front Public Health 2022; 9:809987. [PMID: 35096753 PMCID: PMC8795671 DOI: 10.3389/fpubh.2021.809987] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 11/15/2021] [Indexed: 11/13/2022] Open
Abstract
The COVID-19 infections have profoundly and negatively impacted the whole world. Hence, we have modeled the dynamic spread of global COVID-19 infections with the connectedness approach based on the TVP-VAR model, using the data of confirmed COVID-19 cases during the period of March 23rd, 2020 to September 10th, 2021 in 18 countries. The results imply that, (i) the United States, the United Kingdom and Indonesia are global epidemic centers, among which the United States has the highest degree of the contagion of the COVID-19 infections, which is stable. South Korea, France and Italy are the main receiver of the contagion of the COVID-19 infections, and South Korea has been the most severely affected by the overseas epidemic; (ii) there is a negative correlation between the timeliness, effectiveness and mandatory nature of government policies and the risk of the associated countries COVID-19 epidemic affecting, as well as the magnitude of the net contagion of domestic COVID-19; (iii) the severity of domestic COVID-19 epidemics in the United States and Canada, Canada and Mexico, Indonesia and Canada is almost equivalent, especially for the United States, Canada and Mexico, whose domestic epidemics are with the same tendency; (iv) the COVID-19 epidemic has spread though not only the central divergence manner and chain mode of transmission, but also the way of feedback loop. Thus, more efforts should be made by the governments to enhance the pertinence and compulsion of their epidemic prevention policies and establish a systematic and efficient risk assessment mechanism for public health emergencies.
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Affiliation(s)
- Lijin Xiang
- School of Finance, Shandong University of Finance and Economics, Jinan, China
| | - Shiqun Ma
- School of Finance, Shandong University of Finance and Economics, Jinan, China
| | - Lu Yu
- School of Finance, Shandong University of Finance and Economics, Jinan, China
| | - Wenhao Wang
- School of Finance, Shandong University of Finance and Economics, Jinan, China
| | - Zhichao Yin
- School of Finance, Shandong University of Finance and Economics, Jinan, China
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32
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Nesa MK, Babu MR, Mamun Khan MT. Forecasting COVID-19 situation in Bangladesh. BIOSAFETY AND HEALTH 2021; 4:6-10. [PMID: 34977530 PMCID: PMC8709792 DOI: 10.1016/j.bsheal.2021.12.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 12/20/2021] [Accepted: 12/22/2021] [Indexed: 12/24/2022] Open
Abstract
Forecasting the COVID-19 confirmed cases, deaths, and recoveries demands time to know the severity of the novel coronavirus. This research aims to predict all types of COVID-19 cases (verified people, deaths, and recoveries) from the deadliest 3rd wave data of the COVID-19 pandemic in Bangladesh. We used the official website of the Directorate General of Health Services as our data source. To identify and predict the upcoming trends of the COVID-19 situation of Bangladesh, we fit the Auto-Regressive Integrated Moving Average (ARIMA) model on the data from Mar. 01, 2021 to Jul. 31, 2021. The finding of the ARIMA model (forecast model) reveals that infected, deaths, and recoveries number will have experienced exponential growth in Bangladesh to October 2021. Our model reports that confirmed cases and deaths will escalate by four times, and the recoveries will improve by five times at a later point in October 2021 if the trend of the three scenarios of COVID-19 from March to July lasts. The prediction of the COVID-19 scenario for the next three months is very frightening in Bangladesh, so the strategic planner and field-level personnel need to search for suitable policies and strategies and adopt these for controlling the mass transmission of the virus.
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Affiliation(s)
- Mossamet Kamrun Nesa
- Department of Statistics, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh
| | - Md Rashed Babu
- Department of Statistics, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh
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33
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Chew AWZ, Pan Y, Wang Y, Zhang L. Hybrid deep learning of social media big data for predicting the evolution of COVID-19 transmission. Knowl Based Syst 2021; 233:107417. [PMID: 34690447 PMCID: PMC8522122 DOI: 10.1016/j.knosys.2021.107417] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 07/14/2021] [Accepted: 08/18/2021] [Indexed: 11/22/2022]
Abstract
In this study, a hybrid deep-learning model termed as ODANN, built upon neural networks (NN) coupled with data assimilation and natural language processing (NLP) features extraction methods, has been constructed to concurrently process daily COVID-19 time-series records and large volumes of COVID-19 related Twitter data, as representative of the global community's aggregated emotional responses towards the current pandemic, to model the growth rate in the number of confirmed COVID-19 cases globally via a proposed G parameter. Overall, there were 3 key components to ODANN's development phase, namely: (i) data hydration and pre-processing were performed on COVID-19 related Twitter data ranging between 23 January 2020 and 10 May 2020, which amounted to over 100 million Tweets written in English language; (ii) multiple NLP features extraction methods were subsequently leveraged to encode the hydrated Twitter data into useful semantic word vectors for training ODANN under an optimal set of hyperparameters; and (iii) historical time-series data of defined characteristics were also assimilated into ODANN's selected hidden layer(s) to model the G parameter daily with a lead-time of 1 day. By far, our experimental results demonstrated that by adopting a rolling time-window size of 5 days, with respect to the number of historical time-series records for assimilating different data features, enabled ODANN to outperform other traditional time-series models and recent studies, in terms of the computed RMSE and MAE scores attained from the model's testing step. Overall, the summarized results from ODANN demonstrated its competitive edge in modelling and forecasting the growth rate in the number of COVID-19 cases globally.
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Affiliation(s)
- Alvin Wei Ze Chew
- Bentley Systems Research Office, 1 Harbourfront Pl, HarbourFront Tower One, Singapore 098633, Singapore
| | - Yue Pan
- Shanghai Key Laboratory for Digital Maintenance of Buildings and Infrastructure, Department of Civil Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai, China
| | - Ying Wang
- School of Civil and Environmental Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore
| | - Limao Zhang
- School of Civil and Environmental Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore
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34
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A Three-Stage Data-Driven Approach for Determining Reaction Wheels’ Remaining Useful Life Using Long Short-Term Memory. ELECTRONICS 2021. [DOI: 10.3390/electronics10192432] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Reaction wheels are widely used in the attitude control system of small satellites. Unfortunately, reaction wheels failure restricts the efficacy of a satellite, and it is one of the many reasons leading to premature abandonment of the satellites. This study observes the measurable system parameter of a faulty reaction wheel induced with incipient fault to estimate the remaining useful life of the reaction wheels. We achieve this goal in three stages, as none of the observable system parameters are directly related to the health of a reaction wheel. In the first stage, we identify the necessary observable system parameter and predict the future of these parameters using sensor acquired data and a long short-term memory recurrent neural network. In the second stage, we estimate the health index parameter using a multivariate long short-term memory network. In the third stage, we predict the remaining useful life of reaction wheels based on historical data of the health index parameter. Normalized root mean squared error is used to evaluate the performance of the various models in each stage. Additionally, three different timespans (short, moderate, and extended in the scale of small satellite orbit times) are simulated and tested for the performance of the proposed methodology regarding the malfunction of reaction wheels. Furthermore, the robustness of the proposed method to missing values, input frequency, and noise is studied. The results show promising performance for the proposed scheme with accuracy in predicting health index parameter around 0.01–0.02 normalized root mean squared error, the accuracy in prediction of RUL of 1%–2.5%, and robustness to various uncertainty factors, as discussed above.
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35
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Ghafouri-Fard S, Mohammad-Rahimi H, Motie P, Minabi MA, Taheri M, Nateghinia S. Application of machine learning in the prediction of COVID-19 daily new cases: A scoping review. Heliyon 2021; 7:e08143. [PMID: 34660935 PMCID: PMC8503968 DOI: 10.1016/j.heliyon.2021.e08143] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Revised: 06/14/2021] [Accepted: 10/04/2021] [Indexed: 12/12/2022] Open
Abstract
COVID-19 has produced a global pandemic affecting all over of the world. Prediction of the rate of COVID-19 spread and modeling of its course have critical impact on both health system and policy makers. Indeed, policy making depends on judgments formed by the prediction models to propose new strategies and to measure the efficiency of the imposed policies. Based on the nonlinear and complex nature of this disorder and difficulties in estimation of virus transmission features using traditional epidemic models, artificial intelligence methods have been applied for prediction of its spread. Based on the importance of machine and deep learning approaches in the estimation of COVID-19 spreading trend, in the present study, we review studies which used these strategies to predict the number of new cases of COVID-19. Adaptive neuro-fuzzy inference system, long short-term memory, recurrent neural network and multilayer perceptron are among the mostly used strategies in this regard. We compared the performance of several machine learning methods in prediction of COVID-19 spread. Root means squared error (RMSE), mean absolute error (MAE), R2 coefficient of determination (R2), and mean absolute percentage error (MAPE) parameters were selected as performance measures for comparison of the accuracy of models. R2 values have ranged from 0.64 to 1 for artificial neural network (ANN) and Bidirectional long short-term memory (LSTM), respectively. Adaptive neuro-fuzzy inference system (ANFIS), Autoregressive Integrated Moving Average (ARIMA) and Multilayer perceptron (MLP) have also have R2 values near 1. ARIMA and LSTM had the highest MAPE values. Collectively, these models are capable of identification of learning parameters that affect dissimilarities in COVID-19 spread across various regions or populations, combining numerous intervention methods and implementing what-if scenarios by integrating data from diseases having analogous trends with COVID-19. Therefore, application of these methods would help in precise policy making to design the most appropriate interventions and avoid non-efficient restrictions.
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Affiliation(s)
- Soudeh Ghafouri-Fard
- Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Hossein Mohammad-Rahimi
- Dental Research Center, Research Institute of Dental Science, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Parisa Motie
- Dental Research Center, Research Institute of Dental Science, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | | | - Mohammad Taheri
- Urology and Nephrology Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - Saeedeh Nateghinia
- Skull Base Research Center, Loghman Hakim Hospital, Shahid Beheshti University of Medical Sciences, Tehran, Iran
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36
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Jaya IGNM, Folmer H. Bayesian spatiotemporal forecasting and mapping of COVID-19 risk with application to West Java Province, Indonesia. JOURNAL OF REGIONAL SCIENCE 2021; 61:849-881. [PMID: 34230688 PMCID: PMC8250786 DOI: 10.1111/jors.12533] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 01/30/2021] [Accepted: 03/26/2021] [Indexed: 05/16/2023]
Abstract
The coronavirus disease (COVID-19) has spread rapidly to multiple countries including Indonesia. Mapping its spatiotemporal pattern and forecasting (small area) outbreaks are crucial for containment and mitigation strategies. Hence, we introduce a parsimonious space-time model of new infections that yields accurate forecasts but only requires information regarding the number of incidences and population size per geographical unit and time period. Model parsimony is important because of limited knowledge regarding the causes of COVID-19 and the need for rapid action to control outbreaks. We outline the basics of Bayesian estimation, forecasting, and mapping, in particular for the identification of hotspots. The methodology is applied to county-level data of West Java Province, Indonesia.
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Affiliation(s)
- I. Gede Nyoman M. Jaya
- Department of Economic Geography, Faculty of Spatial SciencesGroningen UniversityGroningenThe Netherlands
- Department of StatisticsPadjadjaran UniversityBandungIndonesia
| | - Henk Folmer
- Department of Economic Geography, Faculty of Spatial SciencesGroningen UniversityGroningenThe Netherlands
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Ryu S, Nam HJ, Kim JM, Kim SW. Current and Future Trends in Hospital Utilization of Patients With Schizophrenia in Korea: A Time Series Analysis Using National Health Insurance Data. Psychiatry Investig 2021; 18:795-800. [PMID: 34404120 PMCID: PMC8390944 DOI: 10.30773/pi.2021.0071] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 06/23/2021] [Indexed: 12/28/2022] Open
Abstract
OBJECTIVE This study aimed to investigate trends in hospital utilization of patients with schizophrenia during the last 10 years in Korea and to predict future trends using time series analysis. METHODS We determined the numbers of patients receiving outpatient or inpatient treatment for schizophrenia per month between 2010 and 2019, using National Health Insurance claims data. Facebook's Prophet was used to fit time series models based on observations for the previous 120 months, and to predict trends over the next 36 months. RESULTS The number of hospitalized patients per month has declined rapidly since 2015, but the monthly number of outpatient visits has steadily increased. Monthly hospital utilization has increased in patients aged ≤29 and ≥50 years, but has declined rapidly since 2014-2015 in patients in their 30s and 40s. The upward trend in overall hospital utilization has slowed considerably in recent years. These trends are expected to continue over the next few years. CONCLUSION This study revealed some notable changes in the hospital utilization patterns of patients with schizophrenia in recent years. There is a need to closely monitor and anticipate potential problems caused by these changing trends.
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Affiliation(s)
- Seunghyong Ryu
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Republic of Korea
| | - Hee Jung Nam
- Department of Psychiatry, Seoul Medical Center, Seoul, Republic of Korea
| | - Jae-Min Kim
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Republic of Korea
| | - Sung-Wan Kim
- Department of Psychiatry, Chonnam National University Medical School, Gwangju, Republic of Korea.,Mindlink, Gwangju Buk-gu Mental Health Center, Gwangju, Republic of Korea
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Alabdulrazzaq H, Alenezi MN, Rawajfih Y, Alghannam BA, Al-Hassan AA, Al-Anzi FS. On the accuracy of ARIMA based prediction of COVID-19 spread. RESULTS IN PHYSICS 2021; 27:104509. [PMID: 34307005 PMCID: PMC8279942 DOI: 10.1016/j.rinp.2021.104509] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 06/25/2021] [Accepted: 06/27/2021] [Indexed: 05/27/2023]
Abstract
COVID-19 was declared a global pandemic by the World Health Organization in March 2020, and has infected more than 4 million people worldwide with over 300,000 deaths by early May 2020. Many researchers around the world incorporated various prediction techniques such as Susceptible-Infected-Recovered model, Susceptible-Exposed-Infected-Recovered model, and Auto Regressive Integrated Moving Average model (ARIMA) to forecast the spread of this pandemic. The ARIMA technique was not heavily used in forecasting COVID-19 by researchers due to the claim that it is not suitable for use in complex and dynamic contexts. The aim of this study is to test how accurate the ARIMA best-fit model predictions were with the actual values reported after the entire time of the prediction had elapsed. We investigate and validate the accuracy of an ARIMA model over a relatively long period of time using Kuwait as a case study. We started by optimizing the parameters of our model to find a best-fit through examining auto-correlation function and partial auto correlation function charts, as well as different accuracy measures. We then used the best-fit model to forecast confirmed and recovered cases of COVID-19 throughout the different phases of Kuwait's gradual preventive plan. The results show that despite the dynamic nature of the disease and constant revisions made by the Kuwaiti government, the actual values for most of the time period observed were well within bounds of our selected ARIMA model prediction at 95% confidence interval. Pearson's correlation coefficient for the forecast points with the actual recorded data was found to be 0.996. This indicates that the two sets are highly correlated. The accuracy of the prediction provided by our ARIMA model is both appropriate and satisfactory.
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Affiliation(s)
- Haneen Alabdulrazzaq
- Computer Science & Information Systems Department, Public Authority for Applied Education & Training, Kuwait
| | - Mohammed N Alenezi
- Computer Science & Information Systems Department, Public Authority for Applied Education & Training, Kuwait
| | | | - Bareeq A Alghannam
- Computer Science & Information Systems Department, Public Authority for Applied Education & Training, Kuwait
| | - Abeer A Al-Hassan
- Information Systems and Operations Management Department, Kuwait University, Kuwait
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Khan F, Ali S, Saeed A, Kumar R, Khan AW. Forecasting daily new infections, deaths and recovery cases due to COVID-19 in Pakistan by using Bayesian Dynamic Linear Models. PLoS One 2021; 16:e0253367. [PMID: 34138956 PMCID: PMC8211153 DOI: 10.1371/journal.pone.0253367] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2021] [Accepted: 06/04/2021] [Indexed: 11/18/2022] Open
Abstract
The COVID-19 has caused the deadliest pandemic around the globe, emerged from the city of Wuhan, China by the end of 2019 and affected all continents of the world, with severe health implications and as well as financial-damage. Pakistan is also amongst the top badly effected countries in terms of casualties and financial loss due to COVID-19. By 20th March, 2021, Pakistan reported 623,135 total confirmed cases and 13,799 deaths. A state space model called 'Bayesian Dynamic Linear Model' (BDLM) was used for the forecast of daily new infections, deaths and recover cases regarding COVID-19. For the estimation of states of the models and forecasting new observations, the recursive Kalman filter was used. Twenty days ahead forecast show that the maximum number of new infections are 4,031 per day with 95% prediction interval (3,319-4,743). Death forecast shows that the maximum number of the deaths with 95% prediction interval are 81 and (67-93), respectively. Maximum daily recoveries are 3,464 with 95% prediction interval (2,887-5,423) in the next 20 days. The average number of new infections, deaths and recover cases are 3,282, 52 and 1,840, respectively, in the upcoming 20 days. As the data generation processes based on the latest data has been identified, therefore it can be updated with the availability of new data to provide latest forecast.
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Affiliation(s)
- Firdos Khan
- School of Natural Sciences (SNS), National University of Sciences and Technology (NUST), Islamabad, Pakistan
- * E-mail:
| | - Shaukat Ali
- Global Change Impact Studies Centre (GCISC), Ministry of Climate Change, Islamabad, Pakistan
| | - Alia Saeed
- Health Services Academy, Islamabad, Pakistan
- ClimatExperts, Islamabad, Pakistan
| | | | - Abdul Wali Khan
- Ministry of National Health Services, Regulations and Coordination Islamabad, Islamabad, Pakistan
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Yadav SK, Akhter Y. Statistical Modeling for the Prediction of Infectious Disease Dissemination With Special Reference to COVID-19 Spread. Front Public Health 2021; 9:645405. [PMID: 34222166 PMCID: PMC8242242 DOI: 10.3389/fpubh.2021.645405] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 05/06/2021] [Indexed: 12/24/2022] Open
Abstract
In this review, we have discussed the different statistical modeling and prediction techniques for various infectious diseases including the recent pandemic of COVID-19. The distribution fitting, time series modeling along with predictive monitoring approaches, and epidemiological modeling are illustrated. When the epidemiology data is sufficient to fit with the required sample size, the normal distribution in general or other theoretical distributions are fitted and the best-fitted distribution is chosen for the prediction of the spread of the disease. The infectious diseases develop over time and we have data on the single variable that is the number of infections that happened, therefore, time series models are fitted and the prediction is done based on the best-fitted model. Monitoring approaches may also be applied to time series models which could estimate the parameters more precisely. In epidemiological modeling, more biological parameters are incorporated in the models and the forecasting of the disease spread is carried out. We came up with, how to improve the existing modeling methods, the use of fuzzy variables, and detection of fraud in the available data. Ultimately, we have reviewed the results of recent statistical modeling efforts to predict the course of COVID-19 spread.
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Affiliation(s)
- Subhash Kumar Yadav
- Department of Statistics, School of Physical and Decision Sciences, Babasaheb Bhimrao Ambedkar University, Lucknow, India
| | - Yusuf Akhter
- Department of Biotechnology, School of Life Sciences, Babasaheb Bhimrao Ambedkar University, Lucknow, India
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Barría-Sandoval C, Ferreira G, Benz-Parra K, López-Flores P. Prediction of confirmed cases of and deaths caused by COVID-19 in Chile through time series techniques: A comparative study. PLoS One 2021; 16:e0245414. [PMID: 33914758 PMCID: PMC8084230 DOI: 10.1371/journal.pone.0245414] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Accepted: 04/07/2021] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Chile has become one of the countries most affected by COVID-19, a pandemic that has generated a large number of cases worldwide. If not detected and treated in time, COVID-19 can cause multi-organ failure and even death. Therefore, it is necessary to understand the behavior of the spread of COVID-19 as well as the projection of infections and deaths. This information is very relevant so that public health organizations can distribute financial resources efficiently and take appropriate containment measures. In this research, we compare different time series methodologies to predict the number of confirmed cases of and deaths from COVID-19 in Chile. METHODS The methodology used in this research consisted of modeling cases of both confirmed diagnoses and deaths from COVID-19 in Chile using Autoregressive Integrated Moving Average (ARIMA henceforth) models, Exponential Smoothing techniques, and Poisson models for time-dependent count data. Additionally, we evaluated the accuracy of the predictions using a training set and a test set. RESULTS The dataset used in this research indicated that the most appropriate model is the ARIMA time series model for predicting the number of confirmed COVID-19 cases, whereas for predicting the number of deaths from COVID-19 in Chile, the most suitable approach is the damped trend method. CONCLUSION The ARIMA models are an alternative to modeling the behavior of the spread of COVID-19; however, depending on the characteristics of the dataset, other methodologies can better predict the behavior of these records, for example, the Holt-Winter method implemented with time-dependent count data.
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Affiliation(s)
- Claudia Barría-Sandoval
- Nursing School, Universidad de las Américas, Concepción, Chile
- Faculty of Nursing, Universidad de Concepción, Concepción, Chile
| | - Guillermo Ferreira
- Department of Statistics, Universidad de Concepción, Concepción, Chile
- ANID - Millennium Science Initiative Program - Millennium Nucleus Center for the Discovery of Structures in Complex Data, Santiago, Chile
| | | | - Pablo López-Flores
- Department of Primary Health Care, Servicio de Salud de Concepción, Concepcion, Chile
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Gangwar HS, Ray PKC. Geographic information system-based analysis of COVID-19 cases in India during pre-lockdown, lockdown, and unlock phases. Int J Infect Dis 2021; 105:424-435. [PMID: 33610777 PMCID: PMC7891046 DOI: 10.1016/j.ijid.2021.02.070] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 02/15/2021] [Accepted: 02/16/2021] [Indexed: 12/24/2022] Open
Abstract
OBJECTIVE The World Health Organization formally announced the global COVID-19 pandemic on March 11, 2020 due to widespread infections. In this study, COVID-19 cases in India were critically analyzed during the pre-lockdown (PLD), lockdown (LD), and unlock (UL) phases. METHOD Analyses were conducted using geospatial technology at district, state, and country levels, and comparisons were also made with other countries throughout the world that had the highest infection rates. India had the third highest infection rate in the world after the USA and Brazil during UL2.0-UL3.0 phases, the second highest after the USA during UL4.0-UL5.0 phases, and the highest among South Asian Association for Regional Cooperation (SAARC) countries in PLD-UL5.0 period. RESULTS The trend in the number of COVID-19 cases was associated with the population density where higher numbers tended to be record in the eastern, southern, and west-central parts of India. The death rate in India throughout the pandemic period under study was lower than the global average. Kerala reported the maximum number of infections during PLD whereas Maharashtra had the highest numbers during all LD and UL phases. Eighty percent of the cases in India were concentrated mainly in highly populous districts. CONCLUSION The top 25 districts accounted for 70.99%, 69.38%, 54.87%, 44.23%, 40.48%, and 38.96% of the infections from the start of UL1.0 until the end of UL phases, respectively, and the top 26-50 districts accounted for 6.38%, 6.76%, 11.23%, 12.98%, 13.40%, and 13.61% of cases in these phase, thereby indicating that COVID-19 cases spread during the UL period. By October 31, 2020, Delhi had the highest number of infections, followed by Bengaluru Urban, Pune, Mumbai, Thane, and Chennai. No decline in the infection rate occurred, even in UL5.0, thereby indicating a highly alarming situation in India.
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Modeling and forecasting number of confirmed and death caused COVID-19 in IRAN: A comparison of time series forecasting methods. Biomed Signal Process Control 2021; 66:102494. [PMID: 33594301 PMCID: PMC7874981 DOI: 10.1016/j.bspc.2021.102494] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 11/19/2020] [Accepted: 02/04/2021] [Indexed: 01/20/2023]
Abstract
Background The COVID-19 pandemic conditions are still prevalent in Iran and other countries and the monitoring system is gradually discovering new cases every day. Therefore, it is a cause for concern around the world, and forecasting the number of future patients and death cases, although not entirely accurate, helps the governments and health-policy makers to make the necessary decisions and impose restrictions to reduce prevalence. Methods In this study, we aimed to find the best model for forecasting the number of confirmed and death cases in Iran. For this purpose, we applied nine models including NNETAR, ARIMA, Hybrid, Holt-Winter, BSTS, TBATS, Prophet, MLP, and ELM network models. The quality of forecasting models is evaluated by three performance metrics, RMSE, MAE, and MAPE. The best model is selected by the lowest value of performance metrics. Then, the number of confirmed and the death cases forecasted for the 30 next days. The used data in this study is the absolute number of confirmed, death cases from February 20 to August 15, 2020. Results Our findings suggested that based on existing data in Iran, the suitable model with the lowest performance metrics for confirmed cases data obtained MLP network and the Holt-Winter model is the suitable model for forecasting death cases in the future. These models forecasted on September 14, 2020, we will have 2484 new confirmed and 114 new death cases of COVID-19. Conclusion According to the results of this study and the existing data, we concluded that the MLP and Holt-Winter models had the lowest error in forecasting in comparison to other methods. Some models had fitted poorly in the test phase and this is because many other factors that are either not available or have been ignored in this study and can affect the accuracy of forecast results. Based on the trend of data and forecast results, the number of confirmed cases and death cases are almost constant and decreasing, respectively. However, due to disease progression and ignoring the recommendations and protocols of the Ministry of health, there is a possibility of re-emerging this disease more seriously in Iran and this requires more preventive care.
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Devaraj J, Madurai Elavarasan R, Pugazhendhi R, Shafiullah GM, Ganesan S, Jeysree AK, Khan IA, Hossain E. Forecasting of COVID-19 cases using deep learning models: Is it reliable and practically significant? RESULTS IN PHYSICS 2021; 21:103817. [PMID: 33462560 PMCID: PMC7806459 DOI: 10.1016/j.rinp.2021.103817] [Citation(s) in RCA: 56] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 12/04/2020] [Accepted: 01/03/2021] [Indexed: 05/17/2023]
Abstract
The ongoing outbreak of the COVID-19 pandemic prevails as an ultimatum to the global economic growth and henceforth, all of society since neither a curing drug nor a preventing vaccine is discovered. The spread of COVID-19 is increasing day by day, imposing human lives and economy at risk. Due to the increased enormity of the number of COVID-19 cases, the role of Artificial Intelligence (AI) is imperative in the current scenario. AI would be a powerful tool to fight against this pandemic outbreak by predicting the number of cases in advance. Deep learning-based time series techniques are considered to predict world-wide COVID-19 cases in advance for short-term and medium-term dependencies with adaptive learning. Initially, the data pre-processing and feature extraction is made with the real world COVID-19 dataset. Subsequently, the prediction of cumulative confirmed, death and recovered global cases are modelled with Auto-Regressive Integrated Moving Average (ARIMA), Long Short-Term Memory (LSTM), Stacked Long Short-Term Memory (SLSTM) and Prophet approaches. For long-term forecasting of COVID-19 cases, multivariate LSTM models is employed. The performance metrics are computed for all the models and the prediction results are subjected to comparative analysis to identify the most reliable model. From the results, it is evident that the Stacked LSTM algorithm yields higher accuracy with an error of less than 2% as compared to the other considered algorithms for the studied performance metrics. Country-specific analysis and city-specific analysis of COVID-19 cases for India and Chennai, respectively, are predicted and analyzed in detail. Also, statistical hypothesis analysis and correlation analysis are done on the COVID-19 datasets by including the features like temperature, rainfall, population, total infected cases, area and population density during the months of May, June, July and August to find out the best suitable model. Further, practical significance of predicting COVID-19 cases is elucidated in terms of assessing pandemic characteristics, scenario planning, optimization of models and supporting Sustainable Development Goals (SDGs).
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Affiliation(s)
- Jayanthi Devaraj
- Department of Information Technology, Sri Venkateswara College of Engineering, Chennai 602117, India
| | | | - Rishi Pugazhendhi
- Department of Mechanical Engineering, Sri Venkateswara College of Engineering, Chennai 602117, India
| | - G M Shafiullah
- Discipline of Engineering and Energy, Murdoch University, 90 South St, Murdoch, WA 6150, Australia
| | - Sumathi Ganesan
- Department of Information Technology, Sri Venkateswara College of Engineering, Chennai 602117, India
| | - Ajay Kaarthic Jeysree
- Department of Information Technology, Sri Venkateswara College of Engineering, Chennai 602117, India
| | - Irfan Ahmad Khan
- Clean and Resilient Energy Systems (CARES) Laboratory, Texas A&M University, Galveston, TX 77553, USA
| | - Eklas Hossain
- Department of Electrical Engineering and Renewable Energy, Oregon Renewable Energy Center (OREC), Oregon Institute of Technology, Klamath Falls, OR 97601, USA
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Rui R, Tian M, Tang ML, Ho GTS, Wu CH. Analysis of the Spread of COVID-19 in the USA with a Spatio-Temporal Multivariate Time Series Model. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:E774. [PMID: 33477576 PMCID: PMC7831328 DOI: 10.3390/ijerph18020774] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 01/10/2021] [Accepted: 01/13/2021] [Indexed: 02/07/2023]
Abstract
With the rapid spread of the pandemic due to the coronavirus disease 2019 (COVID-19), the virus has already led to considerable mortality and morbidity worldwide, as well as having a severe impact on economic development. In this article, we analyze the state-level correlation between COVID-19 risk and weather/climate factors in the USA. For this purpose, we consider a spatio-temporal multivariate time series model under a hierarchical framework, which is especially suitable for envisioning the virus transmission tendency across a geographic area over time. Briefly, our model decomposes the COVID-19 risk into: (i) an autoregressive component that describes the within-state COVID-19 risk effect; (ii) a spatiotemporal component that describes the across-state COVID-19 risk effect; (iii) an exogenous component that includes other factors (e.g., weather/climate) that could envision future epidemic development risk; and (iv) an endemic component that captures the function of time and other predictors mainly for individual states. Our results indicate that maximum temperature, minimum temperature, humidity, the percentage of cloud coverage, and the columnar density of total atmospheric ozone have a strong association with the COVID-19 pandemic in many states. In particular, the maximum temperature, minimum temperature, and the columnar density of total atmospheric ozone demonstrate statistically significant associations with the tendency of COVID-19 spreading in almost all states. Furthermore, our results from transmission tendency analysis suggest that the community-level transmission has been relatively mitigated in the USA, and the daily confirmed cases within a state are predominated by the earlier daily confirmed cases within that state compared to other factors, which implies that states such as Texas, California, and Florida with a large number of confirmed cases still need strategies like stay-at-home orders to prevent another outbreak.
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Affiliation(s)
- Rongxiang Rui
- School of Statistics, Renmin University of China, Beijing 100872, China;
| | - Maozai Tian
- College of Medical Engineering and Technology, Xinjiang Medical University, Ürümqi 830011, China;
| | - Man-Lai Tang
- Department of Mathematics, Statistics and Insurance, Hang Seng University of Hong Kong, Hong Kong, China
| | - George To-Sum Ho
- Department of Supply Chain and Information Management, Hang Seng University of Hong Kong, Hong Kong, China; (G.T.-S.H.); (C.-H.W.)
| | - Chun-Ho Wu
- Department of Supply Chain and Information Management, Hang Seng University of Hong Kong, Hong Kong, China; (G.T.-S.H.); (C.-H.W.)
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Goic M, Bozanic-Leal MS, Badal M, Basso LJ. COVID-19: Short-term forecast of ICU beds in times of crisis. PLoS One 2021; 16:e0245272. [PMID: 33439917 PMCID: PMC7806165 DOI: 10.1371/journal.pone.0245272] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Accepted: 12/27/2020] [Indexed: 11/19/2022] Open
Abstract
By early May 2020, the number of new COVID-19 infections started to increase rapidly in Chile, threatening the ability of health services to accommodate all incoming cases. Suddenly, ICU capacity planning became a first-order concern, and the health authorities were in urgent need of tools to estimate the demand for urgent care associated with the pandemic. In this article, we describe the approach we followed to provide such demand forecasts, and we show how the use of analytics can provide relevant support for decision making, even with incomplete data and without enough time to fully explore the numerical properties of all available forecasting methods. The solution combines autoregressive, machine learning and epidemiological models to provide a short-term forecast of ICU utilization at the regional level. These forecasts were made publicly available and were actively used to support capacity planning. Our predictions achieved average forecasting errors of 4% and 9% for one- and two-week horizons, respectively, outperforming several other competing forecasting models.
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Affiliation(s)
- Marcel Goic
- Department of Industrial Engineering, University of Chile, Santiago, Chile
| | - Mirko S. Bozanic-Leal
- Department of Industrial Engineering, University of Chile, Santiago, Chile
- Instituto de Sistemas Complejos de Ingeniería (ISCI), Santiago, Chile
| | - Magdalena Badal
- Department of Industrial Engineering, University of Chile, Santiago, Chile
- Instituto de Sistemas Complejos de Ingeniería (ISCI), Santiago, Chile
| | - Leonardo J. Basso
- Instituto de Sistemas Complejos de Ingeniería (ISCI), Santiago, Chile
- Department of Civil Engineering, University of Chile, Santiago, Chile
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Battineni G, Chintalapudi N, Amenta F. Forecasting of COVID-19 epidemic size in four high hitting nations (USA, Brazil, India and Russia) by Fb-Prophet machine learning model. APPLIED COMPUTING AND INFORMATICS 2020. [DOI: 10.1108/aci-09-2020-0059] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
PurposeAs of July 30, 2020, more than 17 million novel coronavirus disease 2019 (COVID-19) cases were registered including 671,500 deaths. Yet, there is no immediate medicine or vaccination for control this dangerous pandemic and researchers are trying to implement mathematical or time series epidemic models to predict the disease severity with national wide data.Design/methodology/approachIn this study, the authors considered COVID-19 daily infection data four most COVID-19 affected nations (such as the USA, Brazil, India and Russia) to conduct 60-day forecasting of total infections. To do that, the authors adopted a machine learning (ML) model called Fb-Prophet and the results confirmed that the total number of confirmed cases in four countries till the end of July were collected and projections were made by employing Prophet logistic growth model.FindingsResults highlighted that by late September, the estimated outbreak can reach 7.56, 4.65, 3.01 and 1.22 million cases in the USA, Brazil, India and Russia, respectively. The authors found some underestimation and overestimation of daily cases, and the linear model of actual vs predicted cases found a p-value (<2.2e-16) lower than the R2 value of 0.995.Originality/valueIn this paper, the authors adopted the Fb-Prophet ML model because it can predict the epidemic trend and derive an epidemic curve.
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Higginson S, Milovanovic K, Gillespie J, Matthews A, Williams C, Wall L, Moy N, Hinwood M, Melia A, Paolucci F. COVID-19: The need for an Australian economic pandemic response plan. HEALTH POLICY AND TECHNOLOGY 2020; 9:488-502. [PMID: 32874859 PMCID: PMC7452864 DOI: 10.1016/j.hlpt.2020.08.017] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
OBJECTIVES Pandemics pressure national governments to respond swiftly. Mitigation efforts created an imbalance between population health, capacity of the healthcare system and economic prosperity. Each pandemic arising from a new virus is unknown territory for policy makers, and there is considerable uncertainty of the appropriateness of responses and outcomes. METHODS A qualitative approach was used to review mixed sources of data including Australian reports, official government publications, and COVID-19 data to discern robust future responses. Publicly available epidemiological and economic data were utilised to provide insight into the impact of the pandemic on Australia's healthcare system and economy. RESULTS Policies implemented by the Australian Government to mitigate the spread of COVID-19 impacted the healthcare sector and economy. This paper incorporates lessons learned to inform optimal economic preparedness. The rationale for an economic response plan concomitant with the health pandemic plan is explored to guide Australian Government policy makers in ensuring holistic and robust solutions for future pandemics. CONCLUSIONS In future, an Australian Economic Pandemic Response Plan will aid in health and economic system preparedness, whilst a strong Australian economy and strategic planning will ensure resilience to future pandemics.
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Affiliation(s)
| | - Katarina Milovanovic
- Master of Economics (Econometrics), The University of Sydney, Director of Epione Advisory Pty Limited, Australia
| | - James Gillespie
- Associate Professor in Health Policy, Menzies Centre for Health Policy and The University of Sydney School of Public Health, Australia
| | - Andrew Matthews
- Principal and Actuary at Finity Consulting, Associate Professor at Monash University and Board Member at the Stroke Foundation, Australia
| | - Christopher Williams
- Associate Professor at the School of Medicine and Public Health (Public Health), The University of Newcastle, Postdoctoral Research Fellow at the Hunter Medical Research Institute and Hunter New England Population Health, Newcastle, Australia
| | - Laura Wall
- Post-doctoral Research Fellow in Health Economics, Bachelor of Psychology, The University of Newcastle, Australia
| | - Naomi Moy
- Research Fellow, University of Bologna, Italy
| | - Madeline Hinwood
- Research Academic at the School of Medicine and Public Health, Doctor of Philosophy, The University of Newcastle, Australia
| | - Adrian Melia
- Senior Lecturer Newcastle Business School, The University of Newcastle, Australia
| | - Francesco Paolucci
- Professor of Health Economics & Policy at the Faculty of Business & Law, The University of Newcastle, Australia
- The School of Economics & Management, University of Bologna, Italy
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Ali M, Khan DM, Aamir M, Khalil U, Khan Z. Forecasting COVID-19 in Pakistan. PLoS One 2020; 15:e0242762. [PMID: 33253248 PMCID: PMC7703963 DOI: 10.1371/journal.pone.0242762] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Accepted: 11/10/2020] [Indexed: 11/18/2022] Open
Abstract
OBJECTIVES Forecasting epidemics like COVID-19 is of crucial importance, it will not only help the governments but also, the medical practitioners to know the future trajectory of the spread, which might help them with the best possible treatments, precautionary measures and protections. In this study, the popular autoregressive integrated moving average (ARIMA) will be used to forecast the cumulative number of confirmed, recovered cases, and the number of deaths in Pakistan from COVID-19 spanning June 25, 2020 to July 04, 2020 (10 days ahead forecast). METHODS To meet the desire objectives, data for this study have been taken from the Ministry of National Health Service of Pakistan's website from February 27, 2020 to June 24, 2020. Two different ARIMA models will be used to obtain the next 10 days ahead point and 95% interval forecast of the cumulative confirmed cases, recovered cases, and deaths. Statistical software, RStudio, with "forecast", "ggplot2", "tseries", and "seasonal" packages have been used for data analysis. RESULTS The forecasted cumulative confirmed cases, recovered, and the number of deaths up to July 04, 2020 are 231239 with a 95% prediction interval of (219648, 242832), 111616 with a prediction interval of (101063, 122168), and 5043 with a 95% prediction interval of (4791, 5295) respectively. Statistical measures i.e. root mean square error (RMSE) and mean absolute error (MAE) are used for model accuracy. It is evident from the analysis results that the ARIMA and seasonal ARIMA model is better than the other time series models in terms of forecasting accuracy and hence recommended to be used for forecasting epidemics like COVID-19. CONCLUSION It is concluded from this study that the forecasting accuracy of ARIMA models in terms of RMSE, and MAE are better than the other time series models, and therefore could be considered a good forecasting tool in forecasting the spread, recoveries, and deaths from the current outbreak of COVID-19. Besides, this study can also help the decision-makers in developing short-term strategies with regards to the current number of disease occurrences until an appropriate medication is developed.
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Affiliation(s)
- Muhammad Ali
- Department of Statistics, Abdul Wali Khan University Mardan, Mardan, KP, Pakistan
| | - Dost Muhammad Khan
- Department of Statistics, Abdul Wali Khan University Mardan, Mardan, KP, Pakistan
| | - Muhammad Aamir
- Department of Statistics, Abdul Wali Khan University Mardan, Mardan, KP, Pakistan
| | - Umair Khalil
- Department of Statistics, Abdul Wali Khan University Mardan, Mardan, KP, Pakistan
| | - Zardad Khan
- Department of Statistics, Abdul Wali Khan University Mardan, Mardan, KP, Pakistan
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Forecasting COVID-19 outbreak progression using hybrid polynomial-Bayesian ridge regression model. APPL INTELL 2020; 51:2703-2713. [PMID: 34764555 PMCID: PMC7581693 DOI: 10.1007/s10489-020-01942-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/11/2020] [Indexed: 12/31/2022]
Abstract
In 2020, Coronavirus Disease 2019 (COVID-19), caused by the SARS-CoV-2 (Severe Acute Respiratory Syndrome Corona Virus 2) Coronavirus, unforeseen pandemic put humanity at big risk and health professionals are facing several kinds of problem due to rapid growth of confirmed cases. That is why some prediction methods are required to estimate the magnitude of infected cases and masses of studies on distinct methods of forecasting are represented so far. In this study, we proposed a hybrid machine learning model that is not only predicted with good accuracy but also takes care of uncertainty of predictions. The model is formulated using Bayesian Ridge Regression hybridized with an n-degree Polynomial and uses probabilistic distribution to estimate the value of the dependent variable instead of using traditional methods. This is a completely mathematical model in which we have successfully incorporated with prior knowledge and posterior distribution enables us to incorporate more upcoming data without storing previous data. Also, L2 (Ridge) Regularization is used to overcome the problem of overfitting. To justify our results, we have presented case studies of three countries, −the United States, Italy, and Spain. In each of the cases, we fitted the model and estimate the number of possible causes for the upcoming weeks. Our forecast in this study is based on the public datasets provided by John Hopkins University available until 11th May 2020. We are concluding with further evolution and scope of the proposed model.
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