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Shi L, Shi W, Qiu Z, Yan S, Liu Z, Cao B. CaMAPK1 Plays a Vital Role in the Regulation of Resistance to Ralstonia solanacearum Infection and Tolerance to Heat Stress. PLANTS (BASEL, SWITZERLAND) 2024; 13:1775. [PMID: 38999615 PMCID: PMC11243954 DOI: 10.3390/plants13131775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 06/06/2024] [Accepted: 06/24/2024] [Indexed: 07/14/2024]
Abstract
As an important member of mitogen-activated protein kinase (MAPK) cascades, MAPKs play an important role in plant defense response against biotic and abiotic stresses; however, the involvement of the majority of the MAPK family members against Ralstonia solanacearum and heat stress (HS) remains poorly understood. In the present study, CaMAPK1 was identified from the genome of pepper and its function against R. solanacearum and HS was analyzed. The transcript accumulations of CaMAPK1 and the activities of its native promoter were both significantly induced by R. solanacearum inoculation, HS, and the application of exogenous hormones, including SA, MeJA, and ABA. Transient expression of CaMAPK1 showed that CaMAPK1 can be targeted throughout the whole cells in Nicotiana benthamiana and triggered chlorosis and hypersensitive response-like cell death in pepper leaves, accompanied by the accumulation of H2O2, and the up-regulations of hormones- and H2O2-associated marker genes. The knock-down of CaMAPK1 enhanced the susceptibility to R. solanacearum partially by down-regulating the expression of hormones- and H2O2-related genes and impairing the thermotolerance of pepper probably by attenuating CaHSFA2 and CaHSP70-1 transcripts. Taken together, our results revealed that CaMAPK1 is regulated by SA, JA, and ABA signaling and coordinates responses to R. solanacearum infection and HS in pepper.
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Affiliation(s)
- Lanping Shi
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (L.S.); (Z.Q.); (S.Y.)
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou 350002, China;
| | - Wei Shi
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou 350002, China;
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Zhengkun Qiu
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (L.S.); (Z.Q.); (S.Y.)
| | - Shuangshuang Yan
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (L.S.); (Z.Q.); (S.Y.)
| | - Zhiqin Liu
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou 350002, China;
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Bihao Cao
- Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (South China), Ministry of Agriculture and Rural Affairs, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; (L.S.); (Z.Q.); (S.Y.)
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Mou S, He W, Jiang H, Meng Q, Zhang T, Liu Z, Qiu A, He S. Transcription factor CaHDZ15 promotes pepper basal thermotolerance by activating HEAT SHOCK FACTORA6a. PLANT PHYSIOLOGY 2024; 195:812-831. [PMID: 38270532 DOI: 10.1093/plphys/kiae037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Revised: 12/20/2023] [Accepted: 12/28/2023] [Indexed: 01/26/2024]
Abstract
High temperature stress (HTS) is a serious threat to plant growth and development and to crop production in the context of global warming, and plant response to HTS is largely regulated at the transcriptional level by the actions of various transcription factors (TFs). However, whether and how homeodomain-leucine zipper (HD-Zip) TFs are involved in thermotolerance are unclear. Herein, we functionally characterized a pepper (Capsicum annuum) HD-Zip I TF CaHDZ15. CaHDZ15 expression was upregulated by HTS and abscisic acid in basal thermotolerance via loss- and gain-of-function assays by virus-induced gene silencing in pepper and overexpression in Nicotiana benthamiana plants. CaHDZ15 acted positively in pepper basal thermotolerance by directly targeting and activating HEAT SHOCK FACTORA6a (HSFA6a), which further activated CaHSFA2. In addition, CaHDZ15 interacted with HEAT SHOCK PROTEIN 70-2 (CaHsp70-2) and glyceraldehyde-3-phosphate dehydrogenase1 (CaGAPC1), both of which positively affected pepper thermotolerance. CaHsp70-2 and CaGAPC1 promoted CaHDZ15 binding to the promoter of CaHSFA6a, thus enhancing its transcription. Furthermore, CaHDZ15 and CaGAPC1 were protected from 26S proteasome-mediated degradation by CaHsp70-2 via physical interaction. These results collectively indicate that CaHDZ15, modulated by the interacting partners CaGAPC1 and CaHsp70-2, promotes basal thermotolerance by directly activating the transcript of CaHSFA6a. Thus, a molecular linkage is established among CaHsp70-2, CaGAPC1, and CaHDZ15 to transcriptionally modulate CaHSFA6a in pepper thermotolerance.
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Affiliation(s)
- Shaoliang Mou
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
| | - Weihong He
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
| | - Haitao Jiang
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
| | - Qianqian Meng
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
| | - Tingting Zhang
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
| | - Zhiqin Liu
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- College of Agriculture Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
| | - Ailian Qiu
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
| | - Shuilin He
- Key Laboratory of Applied Genetics of Universities in Fujian Province, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- National Education Minister, Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
- College of Agriculture Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, PR China
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Wang X, Shu X, Su X, Xiong Y, Xiong Y, Chen M, Tong Q, Ma X, Zhang J, Zhao J. Selection of Suitable Reference Genes for RT-qPCR Gene Expression Analysis in Centipedegrass under Different Abiotic Stress. Genes (Basel) 2023; 14:1874. [PMID: 37895223 PMCID: PMC10606319 DOI: 10.3390/genes14101874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Revised: 09/21/2023] [Accepted: 09/25/2023] [Indexed: 10/29/2023] Open
Abstract
As a C4 warm-season turfgrass, centipedegrass (Eremochloa ophiuroides (Munro) Hack.) is known for its exceptional resilience to intensive maintenance practices. In this research, the most stably expressed reference genes in the leaves of centipedegrass under different stress treatments, including salt, cold, drought, aluminum (Al), and herbicide, were screened by the quantitative real-time PCR (RT-qPCR) technique. The stability of 13 candidate reference genes was evaluated by software GeNorm V3.4, NormFinder V20, BestKeeper V1.0, and ReFinder V1.0. The results of this experiment demonstrated that the expression of the UBC (ubiquitin-conjugating enzyme) remained the most stable under cold and Al stress conditions. On the other hand, the MD (malate dehydrogenase) gene exhibited the best performance in leaf tissues subjected to salt and drought stresses. Under herbicide stress, the expression level of the RIP (60S ribosomal protein L2) gene ranked the highest. The expression levels of abiotic stress-associated genes such as PIP1, PAL, COR413, ALMT9, and BAR were assessed to validate the reliability of the selected reference genes. This study provides valuable information and reference points for gene expression under abiotic stress conditions in centipedegrass.
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Affiliation(s)
- Xiaoyun Wang
- College of Grassland Science and Technology, Sichuan Agricultural University, Wenjiang, Chengdu 611130, China
| | - Xin Shu
- College of Grassland Science and Technology, Sichuan Agricultural University, Wenjiang, Chengdu 611130, China
| | - Xiaoli Su
- College of Grassland Science and Technology, Sichuan Agricultural University, Wenjiang, Chengdu 611130, China
| | - Yanli Xiong
- College of Grassland Science and Technology, Sichuan Agricultural University, Wenjiang, Chengdu 611130, China
| | - Yi Xiong
- College of Grassland Science and Technology, Sichuan Agricultural University, Wenjiang, Chengdu 611130, China
| | - Minli Chen
- Sichuan Academy of Grassland Sciences, Pidu, Chengdu 611731, China
| | - Qi Tong
- Sichuan Academy of Grassland Sciences, Pidu, Chengdu 611731, China
| | - Xiao Ma
- College of Grassland Science and Technology, Sichuan Agricultural University, Wenjiang, Chengdu 611130, China
| | - Jianbo Zhang
- Sichuan Academy of Grassland Sciences, Pidu, Chengdu 611731, China
| | - Junming Zhao
- College of Grassland Science and Technology, Sichuan Agricultural University, Wenjiang, Chengdu 611130, China
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Zhang X, Li J, Li M, Zhang S, Song S, Wang W, Wang S, Chang J, Xia Z, Zhang S, Jia H. NtHSP70-8b positively regulates heat tolerance and seed size in Nicotiana tabacum. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 201:107901. [PMID: 37494824 DOI: 10.1016/j.plaphy.2023.107901] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 07/02/2023] [Accepted: 07/20/2023] [Indexed: 07/28/2023]
Abstract
Heat stress considerably restricts the geographical distribution of crops and affects their growth, development, and productivity. HSP70 plays a critical regulatory role in plant growth response to heat stress. However, the mechanisms of this regulatory remain poorly understood. Here, an HSP70 gene, NtHSP70-8b, which is involved in the heat stress response of tobacco, was cloned and identified. The expression of NtHSP70-8b was induced by exogenous abscisic acid (ABA) treatment and abiotic stress, including heat, drought, and salt. Notably, high NtHSP70-8b expression occurred under heat stress conditions, which was consistent with the β-glucuronidase histochemical analysis. Moreover, NtHSP70-8b overexpression markedly enhanced heat stress tolerance by changing the stomatal conductance and antioxidant capacity in tobacco leaves. qRT-PCR showed that the expression levels of ABA synthesis and response genes (NtNCED3 and NtAREB), stress defence genes (NtERD10C and NtLEA5), and other HSP genes (NtHSP90 and NtHSP26a) in NtHSP70-8b-overexpressing tobacco were high under heat stress. The interaction of NtHSP70-8b with NtHSP26a was further confirmed by a luciferase complementation imaging assay. In contrast, NtHSP70-8b knockout mutants showed significantly reduced antioxidant capacity compared to the wild type (WT) under heat stress conditions, suggesting that NtHSP70-8b acts as a positive regulator of heat stress in tobacco. Moreover, NtHSP70-8b overexpression increased the 1000-seed weight. Taken together, NtHSP70-8b is involved in the heat stress response, and NtHSP70-8b overexpression contributed to enhanced tolerance to heat stress, which is thus an essential gene with potential application value for developing heat stress-tolerant crops.
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Affiliation(s)
- Xiaoquan Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China
| | - Juxu Li
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China
| | - Man Li
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China
| | - Shuaitao Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China
| | - Shanshan Song
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China
| | - Weimin Wang
- China Tobacco Zhejiang Industrial Co., Ltd, Hangzhou, 310024, China
| | - Shuai Wang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China
| | - Jianbo Chang
- Sanmenxia Branch of Henan Provincial Tobacco Corporation, Sanmenxia, 472000, China
| | - Zongliang Xia
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China
| | - Songtao Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China.
| | - Hongfang Jia
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, China.
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He Q, Zhang X, He M, Zhang X, Ma Y, Zhu Y, Dong J, Ying J, Wang Y, Liu L, Xu L. Genome-wide characterization of RsHSP70 gene family reveals positive role of RsHSP70-20 gene in heat stress response in radish (Raphanus sativus L.). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2023; 199:107710. [PMID: 37087887 DOI: 10.1016/j.plaphy.2023.107710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 03/28/2023] [Accepted: 04/14/2023] [Indexed: 05/03/2023]
Abstract
Radish is an economical cool-season root vegetable crop worldwide. Heat shock protein 70 (HSP70) plays indispensable roles in plant growth, development and abiotic stress responses. Nevertheless, little information is available regarding the identification and functional characterization of HSP70 gene family in radish. Herein, a total of 34 RsHSP70 genes were identified at the radish genome level, among which nine and 25 RsHSP70s were classified into the HSP110/SSE and DnaK subfamilies, respectively. RNA-seq analysis revealed that some RsHSP70 genes had differential expression profile in radish leaf, root, stamen and pistil. A range of RsHSP70 genes exhibited differential expression under several abiotic stresses such as heat, salt and heavy metals. Intriguingly, the expression of four RsHSP70 genes (RsHSP70-7, RsHSP70-12, RsHSP70-20 and RsHSP70-22) was dramatically up-regulated under heat stress (HS). RT-qPCR and transient LUC reporter assay indicated that both the expression and promoter activity of RsHSP70-20 was strongly induced by HS. Notably, overexpression of RsHSP70-20 significantly enhanced thermotolerance by decreasing reactive oxygen species and promoting proline accumulation in radish, whereas its knock-down plants exhibited increased thermosensitivity, indicating that RsHSP70-20 positively regulate HS response in radish. These results would provide valuable information to decipher the molecular basis of RsHSP70-mediated thermotolerance in radish.
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Affiliation(s)
- Qing He
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Xinyu Zhang
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Min He
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Xiaoli Zhang
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Yingfei Ma
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Yuelin Zhu
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Junhui Dong
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Jiali Ying
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Yan Wang
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China
| | - Liwang Liu
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China; College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou, 225009, PR China
| | - Liang Xu
- National Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, Key Laboratory of Horticultural Crop Biology and Genetic Improvement (East China) of MOAR, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, PR China.
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Zhou X, Su L, Tang R, Dong Y, Wang F, Li R, Xie Q, Zhang X, Xiao G, Li H. Genome-wide analysis of Hsp40 and Hsp70 gene family in four cotton species provides insights into their involvement in response to Verticillium dahliae and abiotic stress. Front Genet 2023; 14:1120861. [PMID: 36777720 PMCID: PMC9909605 DOI: 10.3389/fgene.2023.1120861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Accepted: 01/09/2023] [Indexed: 01/27/2023] Open
Abstract
Introduction: Cotton is an important economic crop to provide natural fibers as raw materials to textile industry, and is significantly affected by biotic and abiotic stress during the whole growth stage, in which Verticillium wilt (VW) caused by Verticillium dahliae is one of the most destructive disease to lead to a significant yield reduction. Heat shock proteins (Hsps) are important molecular chaperones, and play crucial roles in plant growth, development, resistance to biotic and abiotic stress. Hsp40 and Hsp70 are two key Hsps in cell chaperone network, however, the function and regulatory mechanism of Hsp40 and Hsp70 members in VW resistance and abiotic stress in cotton are largely unknown. Methods and Results: Herein, a systematic and comprehensive analysis of Hsp40s and Hsp70s in four cotton species of Gossypium arboretum, G. raimondii, G. hirsutum, and G. barbadense were performed. A total of 291 Hsp40s and 171 Hsp70s identified in four Gossypium species. Sequence analysis revealed that all Hsp40 proteins contained J domain that provides the binding sites to Hsp70. Protein-protein interaction prediction analysis displayed that GhHsp40-55 might interact with GhHsp70-2 and GhHsp70-13, suggesting their potential function as protein complex. Promoter cis-acting element analysis demonstrated that multiple cis-elements related to disease and stress response consists in GhHsp40 and GhHsp70 promoters. Further expression analysis showed that eight GhHsp40s (Hsp40-2,4,8,11,20,23,53,55) and seven GhHsp70s (Hsp70-2,3,6,8,13,19,22) were up-regulated after V. dahliae infection. In addition, five GhHsp40s (Hsp40-2,8,11,53,55) and four GhHsp70s (Hsp70-3,6,8,13) were up-regulated after salt treatment, six GhHsp40s (Hsp40-4,11,20,23) and three GhHsp70s (Hsp70-2,8,19) were up-regulated after drought treatment, four GhHsp40s (Hsp40-2,11,20,23) and four GhHsp70s (Hsp70-3,6,19,22) were up-regulated after temperature treatment, suggesting these Hsps have possible important function in the process of abiotic stress response. Discussion: Our results lay a foundation for understanding the function of Hsp40 and Hsp70 in the resistance against V. dahliae and abiotic stress, and elucidating the regulatory mechanism of the protein complex, evolution and molecular mechanism under stress.
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Affiliation(s)
- Xin Zhou
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi, China
| | - Ling Su
- College of Life Sciences, Shaanxi Normal University, Xi’an, China
| | - Rui Tang
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi, China
| | - Yuxuan Dong
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi, China
| | - Fei Wang
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi, China
| | - Rong Li
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi, China
| | - Quanliang Xie
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi, China
| | - Xianliang Zhang
- National Key Laboratory of Cotton Biology, Institute of Cotton Research (CAAS), Anyang, China,*Correspondence: Xianliang Zhang, ; Guanghui Xiao, ; Hongbin Li,
| | - Guanghui Xiao
- College of Life Sciences, Shaanxi Normal University, Xi’an, China,*Correspondence: Xianliang Zhang, ; Guanghui Xiao, ; Hongbin Li,
| | - Hongbin Li
- Key Laboratory of Xinjiang Phytomedicine Resource and Utilization of Ministry of Education, Key Laboratory of Oasis Town and Mountain-basin System Ecology of Xinjiang Production and Construction Corps, College of Life Sciences, Shihezi University, Shihezi, China,*Correspondence: Xianliang Zhang, ; Guanghui Xiao, ; Hongbin Li,
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Tang W, Arisha MH, Zhang Z, Yan H, Kou M, Song W, Li C, Gao R, Ma M, Wang X, Zhang Y, Li Z, Li Q. Comparative transcriptomic and proteomic analysis reveals common molecular factors responsive to heat and drought stresses in sweetpotaoto ( Ipomoea batatas). FRONTIERS IN PLANT SCIENCE 2023; 13:1081948. [PMID: 36743565 PMCID: PMC9892860 DOI: 10.3389/fpls.2022.1081948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Accepted: 12/28/2022] [Indexed: 06/18/2023]
Abstract
Introduction Crops are affected by various abiotic stresses, among which heat (HT) and drought (DR) stresses are the most common in summer. Many studies have been conducted on HT and DR, but relatively little is known about how drought and heat combination (DH) affects plants at molecular level. Methods Here, we investigated the responses of sweetpotato to HT, DR, and DH stresses by RNA-seq and data-independent acquisition (DIA) technologies, using controlled experiments and the quantification of both gene and protein levels in paired samples. Results Twelve cDNA libraries were created under HT, DR, and DH conditions and controls. We identified 536, 389, and 907 DEGs in response to HT, DR, and DH stresses, respectively. Of these, 147 genes were common and 447 were specifically associated with DH stress. Proteomic analysis identified 1609, 1168, and 1535 DEPs under HT, DR, and DH treatments, respectively, compared with the control, of which 656 were common and 358 were exclusive to DH stress. Further analysis revealed the DEGs/DEPs were associated with heat shock proteins, carbon metabolism, phenylalanine metabolism, starch and cellulose metabolism, and plant defense, amongst others. Correlation analysis identified 6465, 6607, and 6435 co-expressed genes and proteins under HT, DR, and DH stresses respectively. In addition, a combined analysis of the transcriptomic and proteomic data identified 59, 35, and 86 significantly co-expressed DEGs and DEPs under HT, DR, and DH stresses, respectively. Especially, top 5 up-regulated co-expressed DEGs and DEPs (At5g58770, C24B11.05, Os04g0679100, BACOVA_02659 and HSP70-5) and down-regulated co-expressed DEGs and DEPs (AN3, PMT2, TUBB5, FL and CYP98A3) were identified under DH stress. Discussion This is the first study of differential genes and proteins in sweetpotato under DH stress, and it is hoped that the findings will assist in clarifying the molecular mechanisms involved in sweetpotato resistance to heat and drought stress.
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Affiliation(s)
- Wei Tang
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, China
| | - Mohamed Hamed Arisha
- Department of Horticulture, Faculty of Agriculture, Zagazig University, Zagazig, Sharkia, Egypt
| | - Zhenyi Zhang
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, China
| | - Hui Yan
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
| | - Meng Kou
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
| | - Weihan Song
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
| | - Chen Li
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
| | - Runfei Gao
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
| | - Meng Ma
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, China
| | - Xin Wang
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
| | - Yungang Zhang
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
| | - Zongyun Li
- Institute of Integrative Plant Biology, Jiangsu Key Laboratory of Phylogenomics and Comparative Genomics, School of Life Sciences, Jiangsu Normal University, Xuzhou, China
| | - Qiang Li
- Xuzhou Institute of Agricultural Sciences in Jiangsu Xuhuai District/Sweetpotato Research Institute, Chinese Academy of Agricultural Sciences/Key Laboratory of Biology and Genetic Breeding of Sweetpotato, Ministry of Agriculture and Rural Affairs, Xuzhou, China
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8
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Liang L, Xie A, Yang H, Li N, Ma P, Wei S, Zhang S, Lv Y, Hu Y. Quantitative Acetylome Analysis of Soft Wheat Seeds during Artificial Ageing. Foods 2022; 11:foods11223611. [PMID: 36429203 PMCID: PMC9689531 DOI: 10.3390/foods11223611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Accepted: 11/11/2022] [Indexed: 11/16/2022] Open
Abstract
Lysine acetylation (Kac) is a protein post-translational modification (PTM) widely found in plants that plays vital roles in metabolic pathways. Although seed germination and development are regulated by Kac, its potential function in seed ageing remains to be investigated. Our preliminary study demonstrated that Kac levels were altered during wheat seed artificial ageing. However, its specific role in this process still needs to be elucidated. Here, we performed quantitative acetylation proteomics analysis of soft wheat seeds with different germination rates during artificial ageing. A total of 175 acetylation proteins and 255 acetylation modification sites were remarkably changed. The differentially acetylated proteins were enriched in metabolism; response to harsh intracellular environment, such as ROS; protein storage and processing. Notably, expression, point mutation to mimic Kac by K to Q mutation at K80 and K138, protein purification and enzyme activity detection revealed that the Kac of ROS-scavenging glutathione transferase attenuated its activity, indicating that the defense ability of wheat seeds to stress gradually diminished, and the ageing process was inevitable. Collectively, our data provide a basis for further understanding the roles of Kac in seed ageing and might aid in the development of new techniques to prolong seed viability and food quality.
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Affiliation(s)
- Liuke Liang
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
| | - Aowen Xie
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Haojie Yang
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
| | - Na Li
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
| | - Ping’an Ma
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
| | - Shan Wei
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
| | - Shuaibing Zhang
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
| | - Yangyong Lv
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
- Correspondence:
| | - Yuansen Hu
- College of Biological Engineering, Henan University of Technology, Zhengzhou 450001, China
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9
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Tang B, Li X, Zhang X, Yin Q, Xie L, Zou X, Liu F, Dai X. Transcriptome data reveal gene clusters and key genes in pepper response to heat shock. FRONTIERS IN PLANT SCIENCE 2022; 13:946475. [PMID: 36212322 PMCID: PMC9532576 DOI: 10.3389/fpls.2022.946475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 08/08/2022] [Indexed: 06/16/2023]
Abstract
Climate change and global warming pose a great threat to plant growth and development as well as crop productivity. To better study the genome-wide gene expression under heat, we performed a time-course (0.5 to 24 h) transcriptome analysis in the leaf and root of 40-day-old pepper plants under 40°C as well as in control plants. Clustering analysis (K-means) showed that the expression of 29,249 genes can be grouped into 12 clusters with distinct expression dynamics under stress. Gene ontology (GO) enrichment analysis and transcription factor (TF) identification were performed on the clusters with certain expression patterns. Comparative analysis between the heat-treated and control plants also identified differentially expressed genes (DEGs), which showed the largest degree of change at 24 h. Interestingly, more DEGs were identified in the root than in the leaf. Moreover, we analyzed the gene expression of 25 heat shock factor genes (HSFs) in pepper after heat stress, identified five of these HSFs that responded to heat stress, and characterized the role of these genes in heat-tolerant (17CL30) and heat-susceptible (05S180) pepper lines. The findings of this study improve our understanding of the genome-wide heat stress response in pepper.
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Affiliation(s)
- Bingqian Tang
- College of Horticulture, Hunan Agricultural University, Changsha, China
- Longping Branch, Graduate School of Hunan University, Changsha, China
- ERC for Germplasm Innovation and New Variety, Breeding of Horticultural Crops, Changsha, China
- Key Laboratory for Vegetable Biology of Hunan Province, Changsha, China
| | - Xiumin Li
- Longping Branch, Graduate School of Hunan University, Changsha, China
| | - Xinhao Zhang
- College of Horticulture, Hunan Agricultural University, Changsha, China
| | - Qinbiao Yin
- College of Horticulture, Hunan Agricultural University, Changsha, China
| | - LingLing Xie
- Key Laboratory for Vegetable Biology of Hunan Province, Changsha, China
| | - Xuexiao Zou
- College of Horticulture, Hunan Agricultural University, Changsha, China
- Longping Branch, Graduate School of Hunan University, Changsha, China
- ERC for Germplasm Innovation and New Variety, Breeding of Horticultural Crops, Changsha, China
- Key Laboratory for Vegetable Biology of Hunan Province, Changsha, China
| | - Feng Liu
- College of Horticulture, Hunan Agricultural University, Changsha, China
- Longping Branch, Graduate School of Hunan University, Changsha, China
- ERC for Germplasm Innovation and New Variety, Breeding of Horticultural Crops, Changsha, China
- Key Laboratory for Vegetable Biology of Hunan Province, Changsha, China
| | - Xiongze Dai
- College of Horticulture, Hunan Agricultural University, Changsha, China
- ERC for Germplasm Innovation and New Variety, Breeding of Horticultural Crops, Changsha, China
- Key Laboratory for Vegetable Biology of Hunan Province, Changsha, China
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10
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Chen S, Qiu G. Overexpression of Zostera japonica heat shock protein gene ZjHsp70 enhances the thermotolerance of transgenic Arabidopsis. Mol Biol Rep 2022; 49:6189-6197. [PMID: 35412177 DOI: 10.1007/s11033-022-07411-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 03/22/2022] [Indexed: 10/18/2022]
Abstract
BACKGROUND Heat shock protein 70s (Hsp70s) are major members of the heat shock protein family and play a variety of roles to protect plants against stress. Plant Hsp70s are a conserved and widely expressed family of heat shock proteins. They have two main functional regions: N-terminal nucleic acid binding region and C-terminal substrate binding region. METHODS AND RESULTS In this study, we cloned the Hsp70 gene of Zostera japonica (ZjHsp70) based on the sequence obtained by transcriptome sequencing. The transcriptional levels of ZjHsp70 increased significantly at 1 h after heat treatment. ZjHsp70 was located in the cytoplasm and nucleus. The overexpression of ZjHsp70 in Arabidopsis resulted in increased heat tolerance, lower contents of malondialdehyde and higher antioxidant enzyme activity than in the wild type. ZjHsp70 may achieve this goal by maintaining highly active antioxidant enzymes. CONCLUSIONS We show that ZjHsp70 can improve plant heat tolerance by maintaining high antioxidant enzyme activity under high temperature stress. This study provided a basis to study the role of ZjHsp70 in thermotolerance in more detail.
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Affiliation(s)
- Siting Chen
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Beihai, 536007, Guangxi, China.
| | - Guanglong Qiu
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Beihai, 536007, Guangxi, China.
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11
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Liu Z, Yu W, Zhang X, Huang J, Wang W, Miao M, Hu L, Wan C, Yuan Y, Wu B, Lyu M. Genome-Wide Identification and Expression Analysis of Chitinase-like Genes in Petunia axillaris. PLANTS (BASEL, SWITZERLAND) 2022; 11:1269. [PMID: 35567270 PMCID: PMC9100346 DOI: 10.3390/plants11091269] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Revised: 05/02/2022] [Accepted: 05/04/2022] [Indexed: 06/15/2023]
Abstract
Chitinase (EC 3.2.1.14) is a kind of chitin-degrading glycosidase, which plays important roles in the abiotic and biotic defense of plants. In this study, we conducted whole-genome annotation, molecular evolution, and gene expression analyses on the chitinase-like (CTL) gene family members of Petunia axillaris. Thirty-three Petunia axillarischitinase-like genes (PaCTLs) were identified from the latest Petunia genome database. According to the phylogenetic analyses, these genes were divided into GH18 and GH19 subgroups and further subdivided into five classes (Class I to Class V). Conserved motif arrangements indicated their functional relevance within each group. The expansion and homeology analyses showed that gene replication events played an important role in the evolution of PaCTLs and the increase of the GH18 subgroup members was the main reason for the expansion of the PaCTL gene family in the evolution progress. By qRT-PCR analysis, we found that most of the PaCTLs showed a very low expression level in the normal growing plants. But lots of PaCTLs showed upregulated expression profiles when the plants suffered different abiotic stress conditions. Among them, five PaCTLs responded to high temperature and exhibited significantly upregulate expression level. Correspondingly, many hormone responses, as well as biotic and abiotic stress elements were found in the promoters of PaCTLs by using cis-acting element analysis. These results provide a foundation for the exploration of PaCTLs' function and enrich the evolutionary process of the CTL gene family.
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Affiliation(s)
- Zhuoyi Liu
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
- College of Horticulture, South China Agriculture University, Guangzhou 510642, China
| | - Wenfei Yu
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Xiaowen Zhang
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Jinfeng Huang
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Wei Wang
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Miao Miao
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Li Hu
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Chao Wan
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Yuan Yuan
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Binghua Wu
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
| | - Meiling Lyu
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Z.L.); (W.Y.); (X.Z.); (J.H.); (W.W.); (M.M.); (L.H.); (C.W.); (Y.Y.); (B.W.)
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12
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Kang Y, Lee K, Hoshikawa K, Kang M, Jang S. Molecular Bases of Heat Stress Responses in Vegetable Crops With Focusing on Heat Shock Factors and Heat Shock Proteins. FRONTIERS IN PLANT SCIENCE 2022; 13:837152. [PMID: 35481144 PMCID: PMC9036485 DOI: 10.3389/fpls.2022.837152] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 03/09/2022] [Indexed: 05/09/2023]
Abstract
The effects of the climate change including an increase in the average global temperatures, and abnormal weather events such as frequent and severe heatwaves are emerging as a worldwide ecological concern due to their impacts on plant vegetation and crop productivity. In this review, the molecular processes of plants in response to heat stress-from the sensing of heat stress, the subsequent molecular cascades associated with the activation of heat shock factors and their primary targets (heat shock proteins), to the cellular responses-have been summarized with an emphasis on the classification and functions of heat shock proteins. Vegetables contain many essential vitamins, minerals, antioxidants, and fibers that provide many critical health benefits to humans. The adverse effects of heat stress on vegetable growth can be alleviated by developing vegetable crops with enhanced thermotolerance with the aid of various genetic tools. To achieve this goal, a solid understanding of the molecular and/or cellular mechanisms underlying various responses of vegetables to high temperature is imperative. Therefore, efforts to identify heat stress-responsive genes including those that code for heat shock factors and heat shock proteins, their functional roles in vegetable crops, and also their application to developing vegetables tolerant to heat stress are discussed.
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Affiliation(s)
- Yeeun Kang
- World Vegetable Center Korea Office, Wanju-gun, South Korea
| | - Kwanuk Lee
- National Institute of Horticultural and Herbal Science (NIHHS), Rural Development Administration (RDA), Wanju-gun, South Korea
| | - Ken Hoshikawa
- Biological Resources and Post-harvest Division, Japan International Research Center for Agricultural Sciences (JIRCAS), Tsukuba, Japan
| | | | - Seonghoe Jang
- World Vegetable Center Korea Office, Wanju-gun, South Korea
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13
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Nie G, Zhou J, Jiang Y, He J, Wang Y, Liao Z, Appiah C, Li D, Feng G, Huang L, Wang X, Zhang X. Transcriptome characterization of candidate genes for heat tolerance in perennial ryegrass after exogenous methyl Jasmonate application. BMC PLANT BIOLOGY 2022; 22:68. [PMID: 35151272 PMCID: PMC8840555 DOI: 10.1186/s12870-021-03412-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 12/20/2021] [Indexed: 05/05/2023]
Abstract
Methyl jasmonate (MeJA) plays a role in improving plant stress tolerance. The molecular mechanisms associated with heat tolerance mediated by MeJA are not fully understood in perennial grass species. The study was designed to explore transcriptomic mechanisms underlying heat tolerance by exogenous MeJA in perennial ryegrass (Lolium perenne L.) using RNA-seq. Transcriptomic profiling was performed on plants under normal temperature (CK), high temperature for 12 h (H), MeJA pretreatment (T), MeJA pretreatment + H (T-H), respectively. The analysis of differentially expressed genes (DEGs) showed that H resulted in the most DEGs and T had the least, compared with CK. Among them, the DEGs related to the response to oxygen-containing compound was higher in CKvsH, while many genes related to photosynthetic system were down-regulated. The DEGs related to plastid components was higher in CKvsT. GO and KEGG analysis showed that exogenous application of MeJA enriched photosynthesis related pathways under heat stress. Exogenous MeJA significantly increased the expression of genes involved in chlorophyll (Chl) biosynthesis and antioxidant metabolism, and decreased the expression of Chl degradation genes, as well as the expression of heat shock transcription factor - heat shock protein (HSF-HSP) network under heat stress. The results indicated that exogenous application of MeJA improved the heat tolerance of perennial ryegrass by mediating expression of genes in different pathways, such as Chl biosynthesis and degradation, antioxidant enzyme system, HSF-HSP network and JAs biosynthesis.
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Affiliation(s)
- Gang Nie
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Jie Zhou
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yiwei Jiang
- Department of Agronomy, Purdue University, West Lafayette, IN, 47907, USA
| | - Jie He
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yang Wang
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Zongchao Liao
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Charlotte Appiah
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Dandan Li
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Guangyan Feng
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Linkai Huang
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Xia Wang
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
| | - Xinquan Zhang
- Department of Forage Breeding and Cultivation, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
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14
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Nieto-Garibay A, Barraza A, Caamal-Chan G, Murillo-Amador B, Troyo-Diéguez E, Burgoa-Cruz CA, Jaramillo-Limón JN, Loera-Muro A. Habanero pepper ( Capsicum chinense) adaptation to water-deficit stress in a protected agricultural system. FUNCTIONAL PLANT BIOLOGY : FPB 2022; 49:295-306. [PMID: 35130477 DOI: 10.1071/fp20394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
Drought is one of the major factors limiting global crop yield. In Mexico, agriculture is expected to be severely affected by drought. The Capsicum genus has several crop species of agricultural importance. In this work, we analysed the Capsicum chinense plant physiological responses and differentially expressed genes under water stress mainly focused on the responses elicited following recovery through repetitive stress. Plants were cultivated in an experimental block. Each block consisted of plants under water deficit and a control group without deficit. Morphometric and functional parameters, and the expression of genes related to resistance to abiotic stresses were measured. Morphological differences were observed. Plants subjected to water deficit showed impaired growth. Nonetheless, in the physiological parameters, no differences were observed between treatments. We selected abiotic stress-related genes that include heat-shock proteins (HSPs), heat-shock factors (HSFs), transcription factors related to abiotic stress (MYB, ETR1 , and WRKY ), and those associated with biotic and abiotic stress responses (Jar1 and Lox2 ). HSF, HSP, MYB72, ETR1, Jar1, WRKYa , and Lox2 genes were involved in the response to water-deficit stress in C. chinense plants. In conclusion, our work may improve our understanding of the morphological, physiological, and molecular mechanisms underlying hydric stress response in C. chinense .
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Affiliation(s)
- Alejandra Nieto-Garibay
- Centro de Investigaciones Biológicas del Noroeste, SC, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, C.P. 23096, La Paz, Baja California Sur, Mexico
| | - Aarón Barraza
- CONACYT-Centro de Investigaciones Biológicas del Noroeste, SC, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, C.P. 23096, Mexico
| | - Goretty Caamal-Chan
- CONACYT-Centro de Investigaciones Biológicas del Noroeste, SC, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, C.P. 23096, Mexico
| | - Bernardo Murillo-Amador
- Centro de Investigaciones Biológicas del Noroeste, SC, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, C.P. 23096, La Paz, Baja California Sur, Mexico
| | - Enrique Troyo-Diéguez
- Centro de Investigaciones Biológicas del Noroeste, SC, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, C.P. 23096, La Paz, Baja California Sur, Mexico
| | - Carlos Alexis Burgoa-Cruz
- Instituto Tecnológico de La Paz, Boulevard Forjadores de Baja California Sur 4720, 8 de Octubre 2da Secc, La Paz, Baja California Sur, C.P. 23080, Mexico
| | - Jhesy Nury Jaramillo-Limón
- Universidad de Occidente, Unidad los Mochis Boulevard Macario Gaxiola SN Col. Las Malvinas, C.P. 81216, Los Mochis, Sinaloa, Mexico
| | - Abraham Loera-Muro
- CONACYT-Centro de Investigaciones Biológicas del Noroeste, SC, Instituto Politécnico Nacional 195, Playa Palo de Santa Rita Sur, La Paz, Baja California Sur, C.P. 23096, Mexico
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15
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Xiao JJ, Zhang RX, Khan A, Ul Haq S, Gai WX, Gong ZH. CaFtsH06, A Novel Filamentous Thermosensitive Protease Gene, Is Involved in Heat, Salt, and Drought Stress Tolerance of Pepper ( Capsicum annuum L.). Int J Mol Sci 2021; 22:ijms22136953. [PMID: 34203346 PMCID: PMC8268771 DOI: 10.3390/ijms22136953] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 06/23/2021] [Accepted: 06/23/2021] [Indexed: 11/29/2022] Open
Abstract
Harsh environmental factors have continuous negative effects on plant growth and development, leading to metabolic disruption and reduced plant productivity and quality. However, filamentation temperature-sensitive H protease (FtsH) plays a prominent role in helping plants to cope with these negative impacts. In the current study, we examined the transcriptional regulation of the CaFtsH06 gene in the R9 thermo-tolerant pepper (Capsicum annuum L.) line. The results of qRT-PCR revealed that CaFtsH06 expression was rapidly induced by abiotic stress treatments, including heat, salt, and drought. The CaFtsH06 protein was localized to the mitochondria and cell membrane. Additionally, silencing CaFtsH06 increased the accumulation of malonaldehyde content, conductivity, hydrogen peroxide (H2O2) content, and the activity levels of superoxide dismutase and superoxide (·O2−), while total chlorophyll content decreased under these abiotic stresses. Furthermore, CaFtsH06 ectopic expression enhanced tolerance to heat, salt, and drought stresses, thus decreasing malondialdehyde, proline, H2O2, and ·O2− contents while superoxide dismutase activity and total chlorophyll content were increased in transgenic Arabidopsis. Similarly, the expression levels of other defense-related genes were much higher in the transgenic ectopic expression lines than WT plants. These results suggest that CaFtsH06 confers abiotic stress tolerance in peppers by interfering with the physiological indices through reducing the accumulation of reactive oxygen species, inducing the activities of stress-related enzymes and regulating the transcription of defense-related genes, among other mechanisms. The results of this study suggest that CaFtsH06 plays a very crucial role in the defense mechanisms of pepper plants to unfavorable environmental conditions and its regulatory network with other CaFtsH genes should be examined across variable environments.
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Affiliation(s)
- Jing-Jing Xiao
- College of Horticulture, Northwest A&F University, Yangling, Xianyang 712100, China
| | - Rui-Xing Zhang
- College of Horticulture, Northwest A&F University, Yangling, Xianyang 712100, China
| | - Abid Khan
- Department of Horticulture, The University of Haripur, Haripur 22620, Pakistan
| | - Saeed Ul Haq
- College of Horticulture, Northwest A&F University, Yangling, Xianyang 712100, China
- Department of Horticulture, University of Agriculture Peshawar, Peshawar 25120, Pakistan
| | - Wen-Xian Gai
- College of Horticulture, Northwest A&F University, Yangling, Xianyang 712100, China
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, Xianyang 712100, China
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16
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CaHSP18.1a, a Small Heat Shock Protein from Pepper (Capsicum annuum L.), Positively Responds to Heat, Drought, and Salt Tolerance. HORTICULTURAE 2021. [DOI: 10.3390/horticulturae7050117] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Pepper is a thermophilic crop, shallow-rooted plant that is often severely affected by abiotic stresses such as heat, salt, and drought. The growth and development of pepper is seriously affected by adverse stresses, resulting in decreases in the yield and quality of pepper crops. Small heat shock proteins (s HSPs) play a crucial role in protecting plant cells against various stresses. A previous study in our laboratory showed that the expression level of CaHSP18.1a was highly induced by heat stress, but the function and mechanism of CaHSP18.1a responding to abiotic stresses is not clear. In this study, we first analyzed the expression of CaHSP18.1a in the thermo-sensitive B6 line and thermo-tolerant R9 line and demonstrated that the transcription of CaHSP18.1a was strongly induced by heat stress, salt, and drought stress in both R9 and B6, and that the response is more intense and earlier in the R9 line. In the R9 line, the silencing of CaHSP18.1a decreased resistance to heat, drought, and salt stresses. The silencing of CaHSP18.1a resulted in significant increases in relative electrolyte leakage (REL) and malonaldehyde (MDA) contents, while total chlorophyll content decreased under heat, salt, and drought stresses. Overexpression analyses of CaHSP18.1a in transgenic Arabidopsis further confirmed that CaHSP18.1a functions positively in resistance to heat, drought, and salt stresses. The transgenic Arabidopsis had higherchlorophyll content and activities of superoxide dismutase, catalase, and ascorbate peroxidase than the wild type (WT). However, the relative conductivity and MDA content were decreased in transgenic Arabidopsis compared to the wild type (WT). We further showed that the CaHSP18.1a protein is localized to the cell membrane. These results indicate CaHSP18.1a may act as a positive regulator of responses to abiotic stresses.
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Su Y, Huang Y, Dong X, Wang R, Tang M, Cai J, Chen J, Zhang X, Nie G. Exogenous Methyl Jasmonate Improves Heat Tolerance of Perennial Ryegrass Through Alteration of Osmotic Adjustment, Antioxidant Defense, and Expression of Jasmonic Acid-Responsive Genes. FRONTIERS IN PLANT SCIENCE 2021; 12:664519. [PMID: 34025701 PMCID: PMC8137847 DOI: 10.3389/fpls.2021.664519] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 03/24/2021] [Indexed: 05/14/2023]
Abstract
Perennial ryegrass (Lolium perenne L.) is an important cool-season grass species that is widely cultivated in temperate regions worldwide but usually sensitive to heat stress. Jasmonates (JAs) may have a positive effect on plant tolerance under heat stress. In this study, results showed that exogenous methyl jasmonic acid (MeJA) could significantly improve heat tolerance of perennial ryegrass through alteration of osmotic adjustment, antioxidant defense, and the expression of JA-responsive genes. MeJA-induced heat tolerance was involved in the maintenance of better relative water content (RWC), the decline of chlorophyll (Chl) loss for photosynthetic maintenance, as well as maintained lower electrolyte leakage (EL) and malondialdehyde (MDA) content under heat condition, so as to avoid further damage to plants. Besides, results also indicated that exogenous MeJA treatment could increase the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX), thus enhancing the scavenging ability of reactive oxygen species, alleviating the oxidative damage caused by heat stress. Heat stress and exogenous MeJA upregulated transcript levels of related genes (LpLOX2, LpAOC, LpOPR3, and LpJMT) in JA biosynthetic pathway, which also could enhance the accumulation of JA and MeJA content. Furthermore, some NAC transcription factors and heat shock proteins may play a positive role in enhancing resistance of perennial ryegrass with heat stress.
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Affiliation(s)
| | | | | | | | | | | | | | - Xinquan Zhang
- Department of Forage Science, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, China
| | - Gang Nie
- Department of Forage Science, College of Grassland Science and Technology, Sichuan Agricultural University, Chengdu, China
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Panzade KP, Kale SS, Chavan NR, Hatzade B. Genome-wide analysis of Hsp70 and Hsp100 gene families in Ziziphus jujuba. Cell Stress Chaperones 2021; 26:341-353. [PMID: 33184780 PMCID: PMC7925773 DOI: 10.1007/s12192-020-01179-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Revised: 10/31/2020] [Accepted: 11/04/2020] [Indexed: 12/21/2022] Open
Abstract
The Ziziphus species are naturally tolerant to a range of abiotic stresses. Therefore, it is expected that they are an enriched source of genes conferring stress tolerance. Heat shock proteins (Hsps) play a significant role in plants in imparting tolerance against abiotic stress conditions. To get an insight into potential Hsp function in Ziziphus, we performed a genome-wide analysis and expression study of Hsp70 and Hsp100 gene families in Ziziphus jujuba. We identified 21 and 6 genes of the ZjHsp70 and ZjHsp100 families, respectively. Physiochemical properties, chromosomal location, gene structure, motifs, and protein domain organization were analysed for structural and functional characterization. We identified the contribution of tandem and segmental gene duplications in expansions of ZjHsp70s and ZjHsp100s in Z. jujuba. Promoter analysis suggested that ZjHsp70s and ZjHsp100s perform diverse functions related to abiotic stress. Furthermore, expression analyses revealed that most of the Z. jujuba Hsp genes are differentially expressed in response to heat, drought, and salinity stress. Our analyses suggested ZjHsp70-3, ZjHsp70-5, ZjHsp70-6, ZjHsp70-16, ZjHsp70-17, ZjHsp70-20, ZjHsp100-1, ZjHsp100-2, and ZjHsp100-3 are potential candidates for further functional analysis and with regard to breeding new more resilient strains. The present analysis laid the foundation for understanding the molecular mechanism of Hsps70 and Hsp100 gene families regulating abiotic stress tolerance in Z. jujuba.
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Affiliation(s)
- Kishor Prabhakar Panzade
- Division of Molecular Biology and Biotechnology, Indian Agriculture Research Institute, New Delhi, 110012 India
| | - Sonam S. Kale
- Department of Plant Biotechnology, MGM College of Agricultural Biotechnology, Aurangabad, 431007 India
| | - Narendra R. Chavan
- Department of Plant Biotechnology, MGM College of Agricultural Biotechnology, Aurangabad, 431007 India
| | - Bhupal Hatzade
- Department of Plant Biotechnology, Ajeet Seeds Pvt. Ltd., Aurangabad, 431133 India
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Yang YH, Yang H, Li RF, Li CX, Zeng L, Wang CJ, Li N, Luo Z. A Rehmannia glutinosa cinnamate 4-hydroxylase promotes phenolic accumulation and enhances tolerance to oxidative stress. PLANT CELL REPORTS 2021; 40:375-391. [PMID: 33392729 DOI: 10.1007/s00299-020-02639-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Accepted: 11/18/2020] [Indexed: 06/12/2023]
Abstract
RgC4H promotes phenolic accumulation in R. glutinosa, activating the molecular networks of its antioxidant systems, and enhancing the tolerance to oxidative stresses exposed to drought, salinity and H2O2 conditions. Rehmannia glutinosa is of great economic importance in China and increasing R. glutinosa productivity relies, in part, on understanding its tolerance to oxidative stress. Oxidative stress is a key influencing factor for crop productivity in plants exposed to harsh conditions. In the defense mechanisms of plants against stress, phenolics serve an important antioxidant function. Cinnamate 4-hydroxylase (C4H) is the first hydroxylase in the plant phenolics biosynthesis pathway, and elucidating the molecular characteristics of this gene in R. glutinosa is essential for understanding the effect of tolerance to oxidative stress tolerance on improving yield. Using in vitro and in silico methods, a C4H gene, RgC4H, from R. glutinosa was isolated and characterized. RgC4H has 86.34-93.89% amino acid sequence identity with the equivalent protein in other plants and localized to the endoplasmic reticulum. An association between the RgC4H expression and total phenolics content observed in non-transgenic and transgenic R. glutinosa plants suggests that this gene is involved in the process of phenolics biosynthesis. Furthermore, the tolerance of R. glutinosa to drought, salinity and H2O2 stresses was positively or negatively altered in plants with the overexpression or knockdown of RgC4H, respectively, as indicated by the analysis in some antioxidant physiological and molecular indices. Our study highlights the important role of RgC4H in the phenolics/phenylpropanoid pathway and reveals the involvement of phenolic-mediated regulation in oxidative stress tolerance in R. glutinosa.
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Affiliation(s)
- Yan Hui Yang
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China.
| | - Heng Yang
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China
| | - Rui Fang Li
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China
| | - Cui Xiang Li
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China
| | - Lei Zeng
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China
| | - Chao Jie Wang
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China
| | - Na Li
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China
| | - Zhuang Luo
- College of Bioengineering, Henan University of Technology, Lianhua Street 100, Zhengzhou High-Technology Zero, Zhengzhou, 450001, Henan, China
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Tian F, Hu XL, Yao T, Yang X, Chen JG, Lu MZ, Zhang J. Recent Advances in the Roles of HSFs and HSPs in Heat Stress Response in Woody Plants. FRONTIERS IN PLANT SCIENCE 2021; 12:704905. [PMID: 34305991 PMCID: PMC8299100 DOI: 10.3389/fpls.2021.704905] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 06/07/2021] [Indexed: 05/08/2023]
Abstract
A continuous increase in ambient temperature caused by global warming has been considered a worldwide threat. As sessile organisms, plants have evolved sophisticated heat shock response (HSR) to respond to elevated temperatures and other abiotic stresses, thereby minimizing damage and ensuring the protection of cellular homeostasis. In particular, for perennial trees, HSR is crucial for their long life cycle and development. HSR is a cell stress response that increases the number of chaperones including heat shock proteins (HSPs) to counter the negative effects on proteins caused by heat and other stresses. There are a large number of HSPs in plants, and their expression is directly regulated by a series of heat shock transcription factors (HSFs). Therefore, understanding the detailed molecular mechanisms of woody plants in response to extreme temperature is critical for exploring how woody species will be affected by climate changes. In this review article, we summarize the latest findings of the role of HSFs and HSPs in the HSR of woody species and discuss their regulatory networks and cross talk in HSR. In addition, strategies and programs for future research studies on the functions of HSFs and HSPs in the HSR of woody species are also proposed.
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Affiliation(s)
- Fengxia Tian
- College of Life Science and Agricultural Engineering, Nanyang Normal University, Nanyang, China
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Xiao-Li Hu
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Tao Yao
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Xiaohan Yang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Jin-Gui Chen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Meng-Zhu Lu
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
| | - Jin Zhang
- State Key Laboratory of Subtropical Silviculture, College of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, China
- *Correspondence: Jin Zhang ; orcid.org/0000-0002-8397-5078
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Zhang RX, Zhu WC, Cheng GX, Yu YN, Li QH, Haq SU, Said F, Gong ZH. A novel gene, CaATHB-12, negatively regulates fruit carotenoid content under cold stress in Capsicum annuum. Food Nutr Res 2020; 64:3729. [PMID: 33447178 PMCID: PMC7778427 DOI: 10.29219/fnr.v64.3729] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2019] [Revised: 05/20/2020] [Accepted: 09/10/2020] [Indexed: 01/13/2023] Open
Abstract
BACKGROUND Carotenoids, the secondary metabolites terpenoids, are the largest factors that form the fruit color. Similar to flavonoids, they are not only safe and natural colorants of fruits but also play a role as stress response biomolecules. METHODS To study the contribution of the key genes in carotenoids biosynthesis, fruit-color formation, and in response to cold stress, we characterized the key regulatory factor CaATHB-12 from the HD-ZIP I sub-gene family members in pepper. RESULTS Cold stress enhanced carotenoid accumulation as compared with the normal condition. CaATHB-12 silencing through virus-induced gene silencing changed the fruit color by regulating the carotenoid contents. CaATHB-12 silencing increased the antioxidant enzyme activities in the fruits of pepper, exposed to cold stress, whereas CaATHB-12 overexpression decreased the activities of antioxidant enzymes in the transgenic Arabidopsis lines, exposed to cold stress, suggesting that CaATHB-12 is involved in the regulation of cold stress in the pepper fruits. CONCLUSION Our research will provide insights into the formation of fruit color in pepper and contribution of CaATHB-12 in response to cold stress. Further study should be focused on the interaction between CaATHB-12 and its target gene.
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Affiliation(s)
- Rui-Xing Zhang
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P.R. China
| | - Wen-Chao Zhu
- Guizhou Institute of Pepper, Guiyang, P.R. China
| | - Guo-Xin Cheng
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P.R. China
| | - Ya-Nan Yu
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P.R. China
| | - Quan-Hui Li
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P.R. China
| | - Saeed ul Haq
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P.R. China
| | - Fazal Said
- Department of Agriculture, Abdul Wali Khan University, Mardan, Paksitan
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, P.R. China
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Gai WX, Ma X, Li Y, Xiao JJ, Khan A, Li QH, Gong ZH. CaHsfA1d Improves Plant Thermotolerance via Regulating the Expression of Stress- and Antioxidant-Related Genes. Int J Mol Sci 2020; 21:E8374. [PMID: 33171626 PMCID: PMC7672572 DOI: 10.3390/ijms21218374] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 11/04/2020] [Accepted: 11/05/2020] [Indexed: 12/16/2022] Open
Abstract
Heat shock transcription factor (Hsf) plays an important role in regulating plant thermotolerance. The function and regulatory mechanism of CaHsfA1d in heat stress tolerance of pepper have not been reported yet. In this study, phylogenetic tree and sequence analyses confirmed that CaHsfA1d is a class A Hsf. CaHsfA1d harbored transcriptional function and predicted the aromatic, hydrophobic, and acidic (AHA) motif mediated function of CaHsfA1d as a transcription activator. Subcellular localization assay showed that CaHsfA1d protein is localized in the nucleus. The CaHsfA1d was transcriptionally up-regulated at high temperatures and its expression in the thermotolerant pepper line R9 was more sensitive than that in thermosensitive pepper line B6. The function of CaHsfA1d under heat stress was characterized in CaHsfA1d-silenced pepper plants and CaHsfA1d-overexpression Arabidopsis plants. Silencing of the CaHsfA1d reduced the thermotolerance of the pepper, while CaHsfA1d-overexpression Arabidopsis plants exhibited an increased insensitivity to high temperatures. Moreover, the CaHsfA1d maintained the H2O2 dynamic balance under heat stress and increased the expression of Hsfs, Hsps (heat shock protein), and antioxidant gene AtGSTU5 (glutathione S-transferase class tau 5) in transgenic lines. Our findings clearly indicate that CaHsfA1d improved the plant thermotolerance via regulating the expression of stress- and antioxidant-related genes.
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Affiliation(s)
- Wen-Xian Gai
- College of Horticulture, Northwest A&F University, Yangling 712100, China; (W.-X.G.); (X.M.); (Y.L.); (J.-J.X.)
| | - Xiao Ma
- College of Horticulture, Northwest A&F University, Yangling 712100, China; (W.-X.G.); (X.M.); (Y.L.); (J.-J.X.)
| | - Yang Li
- College of Horticulture, Northwest A&F University, Yangling 712100, China; (W.-X.G.); (X.M.); (Y.L.); (J.-J.X.)
| | - Jing-Jing Xiao
- College of Horticulture, Northwest A&F University, Yangling 712100, China; (W.-X.G.); (X.M.); (Y.L.); (J.-J.X.)
| | - Abid Khan
- Department of Horticulture, The University of Haripur, Haripur 22620, Pakistan;
| | - Quan-Hui Li
- College of Horticulture, Northwest A&F University, Yangling 712100, China; (W.-X.G.); (X.M.); (Y.L.); (J.-J.X.)
- Academy of Agricultural and Forestry Sciences, Qinghai University, Xining 810016, China
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling 712100, China; (W.-X.G.); (X.M.); (Y.L.); (J.-J.X.)
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Gai WX, Ma X, Qiao YM, Shi BH, ul Haq S, Li QH, Wei AM, Liu KK, Gong ZH. Characterization of the bZIP Transcription Factor Family in Pepper ( Capsicum annuum L.): CabZIP25 Positively Modulates the Salt Tolerance. FRONTIERS IN PLANT SCIENCE 2020; 11:139. [PMID: 32174937 PMCID: PMC7054902 DOI: 10.3389/fpls.2020.00139] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 01/29/2020] [Indexed: 05/07/2023]
Abstract
The basic leucine zipper (bZIP) proteins compose a family of transcription factors (TFs), which play a crucial role in plant growth, development, and abiotic and biotic stress responses. However, no comprehensive analysis of bZIP family has been reported in pepper (Capsicum annuum L.). In this study, we identified and characterized 60 bZIP TF-encoding genes from two pepper genomes. These genes were divided into 10 groups based on their phylogenetic relationships with bZIP genes from Arabidopsis. Six introns/exons structural patterns within the basic and hinge regions and the conserved motifs were identified among all the pepper bZIP proteins, on the basis of which, we classify them into different subfamilies. Based on the transcriptomic data of Zunla-1 genome, expression analyses of 59 pepper bZIP genes (not including CabZIP25 of CM334 genome), indicated that the pepper bZIP genes were differentially expressed in the pepper tissues and developmental stages, and many of the pepper bZIP genes might be involved in responses to various abiotic stresses and phytohormones. Further, gene expression analysis, using quantitative real-time PCR (qRT-PCR), showed that the CabZIP25 gene was expressed at relatively higher levels in vegetative tissues, and was strongly induced by abiotic stresses and phytohormones. In comparing with wild type Arabidopsis, germination rate, fresh weight, chlorophyll content, and root lengths increased in the CabZIP25-overexpressing Arabidopsis under salt stress. Additionally, CabZIP25-silenced pepper showed lower chlorophyll content than the control plants under salt stress. These results suggested that CabZIP25 improved salt tolerance in plants. Taken together, our results provide new opportunities for the functional characterization of bZIP TFs in pepper.
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Affiliation(s)
- Wen-Xian Gai
- College of Horticulture, Northwest A&F University, Yangling, Shannxi, China
| | - Xiao Ma
- College of Horticulture, Northwest A&F University, Yangling, Shannxi, China
| | - Yi-Ming Qiao
- College of Horticulture, Northwest A&F University, Yangling, Shannxi, China
| | - Bu-Hang Shi
- College of Horticulture, Northwest A&F University, Yangling, Shannxi, China
| | - Saeed ul Haq
- College of Horticulture, Northwest A&F University, Yangling, Shannxi, China
| | - Quan-Hui Li
- College of Horticulture, Northwest A&F University, Yangling, Shannxi, China
- Qinghai Academy of Agricultural and Forestry Sciences, Xining, Qinghai, China
| | - Ai-Min Wei
- Tianjin Vegetable Research Center, Tianjin Academy of Agricultural Sciences, Tianjin, China
| | - Ke-Ke Liu
- College of Horticulture, Henan Agricultural University, Zhengzhou, Henan, China
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, Shannxi, China
- *Correspondence: Zhen-Hui Gong,
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Ma X, Gai WX, Qiao YM, Ali M, Wei AM, Luo DX, Li QH, Gong ZH. Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.). BMC Genomics 2019; 20:775. [PMID: 31653202 PMCID: PMC6814991 DOI: 10.1186/s12864-019-6125-z] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Accepted: 09/20/2019] [Indexed: 12/31/2022] Open
Abstract
Background Calcineurin B-like proteins (CBLs) are major Ca2+ sensors that interact with CBL-interacting protein kinases (CIPKs) to regulate growth and development in plants. The CBL-CIPK network is involved in stress response, yet little is understood on how CBL-CIPK function in pepper (Capsicum annuum L.), a staple vegetable crop that is threatened by biotic and abiotic stressors. Results In the present study, nine CaCBL and 26 CaCIPK genes were identified in pepper and the genes were named based on their chromosomal order. Phylogenetic and structural analysis revealed that CaCBL and CaCIPK genes clustered in four and five groups, respectively. Quantitative real-time PCR (qRT-PCR) assays showed that CaCBL and CaCIPK genes were constitutively expressed in different tissues, and their expression patterns were altered when the plant was exposed to Phytophthora capsici, salt and osmotic stress. CaCIPK1 expression changed in response to stress, including exposure to P. capsici, NaCl, mannitol, salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), ethylene (ETH), cold and heat stress. Knocking down CaCIPK1 expression increased the susceptibility of pepper to P. capsici, reduced root activity, and altered the expression of defense related genes. Transient overexpression of CaCIPK1 enhanced H2O2 accumulation, cell death, and expression of genes involved in defense. Conclusions Nine CaCBL and 26 CaCIPK genes were identified in the pepper genome, and the expression of most CaCBL and CaCIPK genes were altered when the plant was exposed to stress. In particular, we found that CaCIPK1 is mediates the pepper plant’s defense against P. capsici. These results provide the groundwork for further functional characterization of CaCBL and CaCIPK genes in pepper.
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Affiliation(s)
- Xiao Ma
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China
| | - Wen-Xian Gai
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China
| | - Yi-Ming Qiao
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China
| | - Muhammad Ali
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China
| | - Ai-Min Wei
- Tianjin Vegetable Research Center, Tianjin, 300192, People's Republic of China
| | - De-Xu Luo
- Xuhuai Region Huaiyin Institute of Agricultural Sciences, Huaian, Jiangsu, 223001, People's Republic of China
| | - Quan-Hui Li
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China.,Qinghai Academy of Agricultural and Forestry Sciences, Xining, Qinghai, 810016, People's Republic of China
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China. .,State Key Laboratory of Vegetable Germplasm Innovation, Tianjin, 300384, People's Republic of China.
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Chen S, Qiu G, Yang M. SMRT sequencing of full-length transcriptome of seagrasses Zostera japonica. Sci Rep 2019; 9:14537. [PMID: 31601990 PMCID: PMC6787188 DOI: 10.1038/s41598-019-51176-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Accepted: 09/25/2019] [Indexed: 11/20/2022] Open
Abstract
Seagrass meadows are among the four most productive marine ecosystems in the world. Zostera japonica (Z. japonica) is the most widely distributed species of seagrass in China. However, there is no reference genome or transcriptome available for Z. japonica, impeding progress in functional genomic and molecular ecology studies in this species. Temperature is the main factor that controls the distribution and growth of seagrass around the world, yet how seagrass responds to heat stress remains poorly understood due to the lack of genomic and transcriptomic data. In this study, we applied a combination of second- and third-generation sequencing technologies to sequence full-length transcriptomes of Z. japonica. In total, we obtained 58,134 uniform transcripts, which included 46,070 high-quality full-length transcript sequences. We identified 15,411 simple sequence repeats, 258 long non-coding RNAs and 28,038 open reading frames. Exposure to heat elicited a complex transcriptional response in genes involved in posttranslational modification, protein turnover and chaperones. Overall, our study provides the first large-scale full-length trascriptome in Zostera japonica, allowing for structural, functional and comparative genomics studies in this important seagrass species. Although previous studies have focused specifically on heat shock proteins, we found that examination of other heat stress related genes is important for studying response to heat stress in seagrass. This study provides a genetic resource for the discovery of genes related to heat stress tolerance in this species. Our transcriptome can be further utilized in future studies to understand the molecular adaptation to heat stress in Zostera japonica.
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Affiliation(s)
- Siting Chen
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Beihai, Guangxi, 536007, China.
| | - Guanglong Qiu
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Beihai, Guangxi, 536007, China
| | - Mingliu Yang
- Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove Research Center, Guangxi Academy of Sciences, Beihai, Guangxi, 536007, China
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Huang LJ, Cheng GX, Khan A, Wei AM, Yu QH, Yang SB, Luo DX, Gong ZH. CaHSP16.4, a small heat shock protein gene in pepper, is involved in heat and drought tolerance. PROTOPLASMA 2019; 256:39-51. [PMID: 29946904 DOI: 10.1007/s00709-018-1280-7] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2018] [Accepted: 06/18/2018] [Indexed: 05/08/2023]
Abstract
Environmental stress affects growth and development of crops, and reduces yield and quality of crops. To cope with environmental stressors, plants have sophisticated defense mechanisms, including the HSF/HSP pathway. Here, we identify the expression pattern of CaHSP16.4 in thermo-tolerant and thermo-sensitive pepper (Capsicum annuum L.) lines. Under heat stress, R9 thermo-tolerant line had higher CaHSP16.4 expression level than the B6 thermo-sensitive line. Under drought stress, expression pattern of CaHSP16.4 was dynamic. Initially, CaHSP16.4 was downregulated then CaHSP16.4 significantly increased. Subcellular localization assay showed that CaHSP16.4 localizes in cytoplasm and nucleus. In the R9 line, silencing of CaHSP16.4 resulted in a significant increase in malonaldehyde content and a significant reduction in total chlorophyll content, suggesting that silencing of CaHSP16.4 reduces heat and drought stresses tolerance. Overexpression of CaHSP16.4 enhances tolerance to heat stress in Arabidopsis. Under heat stress, the survival rate of CaHSP16.4 overexpression lines was significantly higher than wild type. Furthermore, under heat, drought, and combined stress conditions, the CaHSP16.4-overexpression lines had lower relative electrolytic leakage and malonaldehyde content, higher total chlorophyll content, and higher activity levels of superoxide dismutase, catalase, ascorbic acid peroxidase, and glutathione peroxidase compared to wild type. Furthermore, the expression levels of the stress response genes in the overexpression lines were higher than the wild type. These results indicate that the overexpression of CaHSP16.4 enhances the ability of reactive oxygen species scavenging under heat and drought stress.
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Affiliation(s)
- Liu-Jun Huang
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China
| | - Guo-Xin Cheng
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China
| | - Abid Khan
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China
| | - Ai-Min Wei
- Tianjin Vegetable Research Center, Tianjin, 300192, People's Republic of China
| | - Qing-Hui Yu
- Institute of Horticulture Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, People's Republic of China
| | - Sheng-Bao Yang
- Institute of Horticulture Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, People's Republic of China
| | - De-Xu Luo
- Xuhuai Region Huaiyin Institute of Agricultural Sciences, Huai'an, 223001, Jiangsu, People's Republic of China
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, People's Republic of China.
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Issa A, Esmaeel Q, Sanchez L, Courteaux B, Guise JF, Gibon Y, Ballias P, Clément C, Jacquard C, Vaillant-Gaveau N, Aït Barka E. Impacts of Paraburkholderia phytofirmans Strain PsJN on Tomato ( Lycopersicon esculentum L.) Under High Temperature. FRONTIERS IN PLANT SCIENCE 2018; 9:1397. [PMID: 30405648 PMCID: PMC6201190 DOI: 10.3389/fpls.2018.01397] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2018] [Accepted: 09/03/2018] [Indexed: 05/24/2023]
Abstract
Abnormal temperatures induce physiological and biochemical changes resulting in the loss of yield. The present study investigates the impact of the PsJN strain of Paraburkholderia phytofirmans on tomato (Lycopersicon esculentum Mill.) in response to heat stress (32°C). The results of this work showed that bacterial inoculation with P. phytofirmans strain PsJN increased tomato growth parameters such as chlorophyll content and gas exchange at both normal and high temperatures (25 and 32°C). At normal temperature (25°C), the rate of photosynthesis and the photosystem II activity increased with significant accumulations of sugars, total amino acids, proline, and malate in the bacterized tomato plants, demonstrating that the PsJN strain had a positive effect on plant growth. However, the amount of sucrose, total amino acids, proline, and malate were significantly affected in tomato leaves at 32°C compared to that at 25°C. Changes in photosynthesis and chlorophyll fluorescence showed that the bacterized tomato plants were well acclimated at 32°C. These results reinforce the current knowledge about the PsJN strain of P. phytofirmans and highlight in particular its ability to alleviate the harmful effects of high temperatures by stimulating the growth and tolerance of tomato plants.
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Affiliation(s)
- Alaa Issa
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Qassim Esmaeel
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Lisa Sanchez
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Barbara Courteaux
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Jean-Francois Guise
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Yves Gibon
- UMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave-d’Ornon, France
| | - Patricia Ballias
- UMR 1332 Biologie du Fruit et Pathologie, INRA, Villenave-d’Ornon, France
| | - Christophe Clément
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Cédric Jacquard
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Nathalie Vaillant-Gaveau
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
| | - Essaïd Aït Barka
- SFR Condorcet FR CNRS 3417, Unité de Recherche Résistance Induite et BioProtection des Plantes, UFR Sciences Exactes et Naturelles, Université de Reims Champagne-Ardenne, Reims, France
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Ali M, Luo DX, Khan A, Haq SU, Gai WX, Zhang HX, Cheng GX, Muhammad I, Gong ZH. Classification and Genome-Wide Analysis of Chitin-Binding Proteins Gene Family in Pepper (Capsicum annuum L.) and Transcriptional Regulation to Phytophthora capsici, Abiotic Stresses and Hormonal Applications. Int J Mol Sci 2018; 19:E2216. [PMID: 30060631 PMCID: PMC6121964 DOI: 10.3390/ijms19082216] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 07/23/2018] [Accepted: 07/26/2018] [Indexed: 11/26/2022] Open
Abstract
Chitin-binding proteins are pathogenesis-related gene family, which play a key role in the defense response of plants. However, thus far, little is known about the chitin-binding family genes in pepper (Capsicum annuum L.). In current study, 16 putative chitin genes (CaChi) were retrieved from the latest pepper genome database, and were classified into four distinct classes (I, III, IV and VI) based on their sequence structure and domain architectures. Furthermore, the structure of gene, genome location, gene duplication and phylogenetic relationship were examined to clarify a comprehensive background of the CaChi genes in pepper. The tissue-specific expression analysis of the CaChi showed the highest transcript levels in seed followed by stem, flower, leaf and root, whereas the lowest transcript levels were noted in red-fruit. Phytophthora capsici post inoculation, most of the CaChi (CaChiI3, CaChiIII1, CaChiIII2, CaChiIII4, CaChiIII6, CaChiIII7, CaChiIV1, CaChiVI1 and CaChiVI2) were induced by both strains (PC and HX-9). Under abiotic and exogenous hormonal treatments, the CaChiIII2, CaChiIII7, CaChiVI1 and CaChiVI2 were upregulated by abiotic stress, while CaChiI1, CaChiIII7, CaChiIV1 and CaChiIV2 responded to hormonal treatments. Furthermore, CaChiIV1-silenced plants display weakened defense by reducing (60%) root activity and increase susceptibility to NaCl stress. Gene ontology (GO) enrichment analysis revealed that CaChi genes primarily contribute in response to biotic, abiotic stresses and metabolic/catabolic process within the biological process category. These results exposed that CaChi genes are involved in defense response and signal transduction, suggesting their vital roles in growth regulation as well as response to stresses in pepper plant. In conclusion, these finding provide basic insights for functional validation of the CaChi genes in different biotic and abiotic stresses.
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Affiliation(s)
- Muhammad Ali
- College of Horticulture, Northwest A&F University, Yangling 712100, China.
| | - De-Xu Luo
- Xuhuai Region Huaiyin Institute of Agricultural Sciences, Huaian 223001, China.
| | - Abid Khan
- College of Horticulture, Northwest A&F University, Yangling 712100, China.
| | - Saeed Ul Haq
- College of Horticulture, Northwest A&F University, Yangling 712100, China.
| | - Wen-Xian Gai
- College of Horticulture, Northwest A&F University, Yangling 712100, China.
| | - Huai-Xia Zhang
- College of Horticulture, Northwest A&F University, Yangling 712100, China.
| | - Guo-Xin Cheng
- College of Horticulture, Northwest A&F University, Yangling 712100, China.
| | - Izhar Muhammad
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling 712100, China.
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling 712100, China.
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Usman MG, Rafii MY, Martini MY, Yusuff OA, Ismail MR, Miah G. Introgression of heat shock protein (Hsp70 and sHsp) genes into the Malaysian elite chilli variety Kulai (Capsicum annuum L.) through the application of marker-assisted backcrossing (MAB). Cell Stress Chaperones 2018; 23:223-234. [PMID: 28812232 PMCID: PMC5823804 DOI: 10.1007/s12192-017-0836-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 07/21/2017] [Accepted: 07/22/2017] [Indexed: 12/30/2022] Open
Abstract
Backcrossing together with simple sequence repeat marker strategy was adopted to improve popular Malaysian chilli Kulai (Capsicum annuum L.) for heat tolerance. The use of molecular markers in backcross breeding and selection contributes significantly to overcoming the main drawbacks such as increase linkage drag and time consumption, in the ancient manual breeding approach (conventional), and speeds up the genome recovery of the recurrent parent. The strategy was adopted to introgress heat shock protein gene(s) from AVPP0702 (C. annuum L.), which are heat-tolerant, into the genetic profile of Kulai, a popular high-yielding chilli but which is heat sensitive. The parents were grown on seed trays, and parental screening was carried out with 252 simple sequence repeat markers. The selected parents were crossed and backcrossed to generate F1 hybrids and backcross generations. Sixty-eight markers appeared to be polymorphic and were used to assess the backcross generation; BC1F1, BC2F1 and BC3F1. The average recipient allele of the selected four BC1F1 plants was 80.75% which were used to produce the BC2F1 generation. BC1-P7 was the best BC1F1 plant because it had the highest recovery at 83.40% and was positive to Hsp-linked markers (Hsp70-u2 and AGi42). After three successive generations of backcrossing, the average genome recovery of the recurrent parent in the selected plants in BC3F1 was 95.37%. Hsp gene expression analysis was carried out on BC1F1, BC2F1 and BC3F1 selected lines. The Hsp genes were found to be up-regulated when exposed to heat treatment. The pattern of Hsp expression in the backcross generations was similar to that of the donor parent. This confirms the successful introgression of a stress-responsive gene (Hsp) into a Kulai chilli pepper variety. Furthermore, the yield performance viz. plant height, number of fruits, fruit length and weight and total yield of the improved plant were similar with the recurrent parent except that the plant height was significantly lower than the Kulai (recurrent) parent.
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Affiliation(s)
- Magaji G Usman
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
| | - Mohd Y Rafii
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia.
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia.
| | - Mohammad Y Martini
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
| | - Oladosu A Yusuff
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
| | - Mohd R Ismail
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
- Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
| | - Gous Miah
- Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia, 43400 UPM, Serdang, Selangor, Malaysia
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30
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Usman MG, Rafii MY, Martini MY, Yusuff OA, Ismail MR, Miah G. Molecular analysis of Hsp70 mechanisms in plants and their function in response to stress. Biotechnol Genet Eng Rev 2017. [PMID: 28649918 DOI: 10.1080/02648725.2017.1340546] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Studying the strategies of improving abiotic stress tolerance is quite imperative and research under this field will increase our understanding of response mechanisms to abiotic stress such as heat. The Hsp70 is an essential regulator of protein having the tendency to maintain internal cell stability like proper folding protein and breakdown of unfolded proteins. Hsp70 holds together protein substrates to help in movement, regulation, and prevent aggregation under physical and or chemical pressure. However, this review reports the molecular mechanism of heat shock protein 70 kDa (Hsp70) action and its structural and functional analysis, research progress on the interaction of Hsp70 with other proteins and their interaction mechanisms as well as the involvement of Hsp70 in abiotic stress responses as an adaptive defense mechanism.
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Affiliation(s)
- Magaji G Usman
- a Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Mohd Y Rafii
- a Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia , Serdang , Selangor , Malaysia.,b Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Mohammad Y Martini
- b Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Oladosu A Yusuff
- a Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Mohd R Ismail
- a Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia , Serdang , Selangor , Malaysia.,b Department of Crop Science, Faculty of Agriculture , Universiti Putra Malaysia , Serdang , Selangor , Malaysia
| | - Gous Miah
- a Institute of Tropical Agriculture and Food Security, Universiti Putra Malaysia , Serdang , Selangor , Malaysia
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31
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Han SW, Hwang BK. Molecular functions of Xanthomonas type III effector AvrBsT and its plant interactors in cell death and defense signaling. PLANTA 2017; 245:237-253. [PMID: 27928637 DOI: 10.1007/s00425-016-2628-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2016] [Accepted: 11/30/2016] [Indexed: 05/20/2023]
Abstract
Xanthomonas effector AvrBsT interacts with plant defense proteins and triggers cell death and defense response. This review highlights our current understanding of the molecular functions of AvrBsT and its host interactor proteins. The AvrBsT protein is a member of a growing family of effector proteins in both plant and animal pathogens. Xanthomonas type III effector AvrBsT, a member of the YopJ/AvrRxv family, suppresses plant defense responses in susceptible hosts, but triggers cell death signaling leading to hypersensitive response (HR) and defense responses in resistant plants. AvrBsT interacts with host defense-related proteins to trigger the HR cell death and defense responses in plants. Here, we review and discuss recent progress in understanding the molecular functions of AvrBsT and its host interactor proteins in pepper (Capsicum annuum). Pepper arginine decarboxylase1 (CaADC1), pepper aldehyde dehydrogenase1 (CaALDH1), pepper heat shock protein 70a (CaHSP70a), pepper suppressor of the G2 allele of skp1 (CaSGT1), pepper SNF1-related kinase1 (SnRK1), and Arabidopsis acetylated interacting protein1 (ACIP1) have been identified as AvrBsT interactors in pepper and Arabidopsis. Gene expression profiling, virus-induced gene silencing, and transient transgenic overexpression approaches have advanced the functional characterization of AvrBsT-interacting proteins in plants. AvrBsT is localized in the cytoplasm and forms protein-protein complexes with host interactors. All identified AvrBsT interactors regulate HR cell death and defense responses in plants. Notably, CaSGT1 physically binds to both AvrBsT and pepper receptor-like cytoplasmic kinase1 (CaPIK1) in the cytoplasm. During infection with Xanthomonas campestris pv. vesicatoria strain Ds1 (avrBsT), AvrBsT is phosphorylated by CaPIK1 and forms the active AvrBsT-CaSGT1-CaPIK1 complex, which ultimately triggers HR cell death and defense responses. Collectively, the AvrBsT interactor proteins are involved in plant cell death and immunity signaling.
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Affiliation(s)
- Sang Wook Han
- Department of Integrative Plant Science, Chung-Ang University, Anseong, 17546, Republic of Korea
| | - Byung Kook Hwang
- Laboratory of Molecular Plant Pathology, College of Life Sciences and Biotechnology, Korea University, Anam-dong, Sungbuk-ku, Seoul, 02841, Republic of Korea.
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Wang H, Niu H, Zhai Y, Lu M. Characterization of BiP Genes from Pepper ( Capsicum annuum L.) and the Role of CaBiP1 in Response to Endoplasmic Reticulum and Multiple Abiotic Stresses. FRONTIERS IN PLANT SCIENCE 2017; 8:1122. [PMID: 28702041 PMCID: PMC5487487 DOI: 10.3389/fpls.2017.01122] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2017] [Accepted: 06/12/2017] [Indexed: 05/18/2023]
Abstract
Adverse environmental conditions have a detrimental impact on crop growth and development, and cause protein denaturation or misfolding. The binding protein (BiP) plays an important protective role by alleviating endoplasmic reticulum (ER) stress induced by misfolded proteins. In this study, we characterized three BiP genes (CaBiP1, CaBiP2, and CaBiP3) in pepper, an economically important vegetable and spice species. The role of CaBiP1 in plant tolerance to ER stress and adverse environmental conditions (including heat, salinity, osmotic and drought stress) were investigated. All the expected functional and signaling domains were detected in three BiP proteins, but the motifs and exon-intron distribution differed slightly in CaBiP3. CaBiP1 and CaBiP2 were constitutively expressed in all the tested tissues under both normal and stressed conditions, whereas CaBiP3 was mainly expressed following stress. Silencing of CaBiP1 reduced pepper tolerance to ER stress and various environment stresses, and was accompanied by increased H2O2 accumulation, MDA content, relative electric leakage (REL), water loss rate, and a reduction in soluble protein content and relative water content (RWC) in the leaves. Conversely, overexpression of CaBiP1 in Arabidopsis enhanced tolerance to ER stress and multiple environment stresses, as demonstrated by an increase in germination rate, root length, survival rate, RWC, the unfolded protein response (UPR) pathway, and a decrease in water loss rate. Our results suggest that CaBiP1 may contribute to plant tolerance to abiotic stresses by reducing ROS accumulation, increasing the water-retention ability, and stimulating UPR pathways and expression of stress-related genes.
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Guo M, Liu JH, Ma X, Zhai YF, Gong ZH, Lu MH. Genome-wide analysis of the Hsp70 family genes in pepper (Capsicum annuum L.) and functional identification of CaHsp70-2 involvement in heat stress. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2016; 252:246-256. [PMID: 27717461 DOI: 10.1016/j.plantsci.2016.07.001] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Revised: 07/01/2016] [Accepted: 07/04/2016] [Indexed: 05/24/2023]
Abstract
Hsp70s function as molecular chaperones and are encoded by a multi-gene family whose members play a crucial role in plant response to stress conditions, and in plant growth and development. Pepper (Capsicum annuum L.) is an important vegetable crop whose genome has been sequenced. Nonetheless, no overall analysis of the Hsp70 gene family is reported in this crop plant to date. To assess the functionality of Capsicum annuum Hsp70 (CaHsp70) genes, pepper genome database was analyzed in this research. A total of 21 CaHsp70 genes were identified and their characteristics were also described. The promoter and transcript expression analysis revealed that CaHsp70s were involved in pepper growth and development, and heat stress response. Ectopic expression of a cytosolic gene, CaHsp70-2, regulated expression of stress-related genes and conferred increased thermotolerance in transgenic Arabidopsis. Taken together, our results provide the basis for further studied to dissect CaHsp70s' function in response to heat stress as well as other environmental stresses.
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Affiliation(s)
- Meng Guo
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Jin-Hong Liu
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Xiao Ma
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Yu-Fei Zhai
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, PR China
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, PR China.
| | - Ming-Hui Lu
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, PR China.
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Zhai Y, Guo M, Wang H, Lu J, Liu J, Zhang C, Gong Z, Lu M. Autophagy, a Conserved Mechanism for Protein Degradation, Responds to Heat, and Other Abiotic Stresses in Capsicum annuum L. FRONTIERS IN PLANT SCIENCE 2016; 7:131. [PMID: 26904087 PMCID: PMC4746239 DOI: 10.3389/fpls.2016.00131] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2015] [Accepted: 01/25/2016] [Indexed: 05/16/2023]
Abstract
Abiotic stresses negatively affect plants growth and development by inducing protein denaturation, and autophagy degrades the damaged proteins to alleviate their toxicity, however, little is known about the involvement of autophagy in pepper (Capsicum annuum L.) tolerances to abiotic stresses. In this study, we identified autophagy-related gene (ATG) members in the whole genome of pepper by HMM method and analyzed their expression profiles in response to heat and other abiotic stresses by quantitative real-time PCR. The results showed that the CaATG contained 15 core ATG members including 29 ATG proteins with their respective conserved functional domains, involving the whole process of autophagy. Under normal environmental condition, the expression of CaATG genes showed tissue- and developmental stage-specific patterns, while under abiotic stresses of salt, drought, heat, cold and carbohydrate starvation, the accumulation of autophagosome punctate increased and the expression level of CaATG genes changed with stress type-dependent pattern, which indicates the linkage of autophagy in pepper response to abiotic stresses. After treated with heat stress, both the number of up-regulated CaATG genes and the increment of autophagosome punctate were higher in pepper thermotolerant line R9 than those in thermosensitive line B6, implying an association of autophagy with heat tolerance. In addition, CaATG6 was predicted to interact with CaHSP90 family members. Our study suggests that autophagy is connected to pepper tolerances to heat and other abiotic stresses.
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35
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Plant Small Heat Shock Proteins and Its Interactions with Biotic Stress. HEAT SHOCK PROTEINS AND PLANTS 2016. [DOI: 10.1007/978-3-319-46340-7_2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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Masand S, Yadav SK. Overexpression of MuHSP70 gene from Macrotyloma uniflorum confers multiple abiotic stress tolerance in transgenic Arabidopsis thaliana. Mol Biol Rep 2015; 43:53-64. [PMID: 26694324 DOI: 10.1007/s11033-015-3938-y] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2015] [Accepted: 12/17/2015] [Indexed: 11/24/2022]
Abstract
A 70-KD heat shock protein (HSP70) is one of the most conserved chaperones. It is involved in de novo protein folding and prevents the aggregation of unfolded proteins under lethal environmental factors. The purpose of this study is to characterise a MuHSP70 from horsegram (Macrotyloma uniflorum) and elucidating its role in stress tolerance of plants. A MuHSP70 was cloned and characterised from a natural drought stress tolerant HPK4 variety of horsegram (M. uniflorum). For functional characterization, MuHSP70 was overexpressed in transgenic Arabidopsis. Overexpression of MuHSP70 was found to provide tolerance to the transgenic Arabidopsis against various stresses such as heat, cold, drought, salinity and oxidative stress. MuHSP70 transgenics were observed to maintain the shoot biomass, root length, relative water content, and chlorophyll content during exposure to multi-stresses relative to non-transgenic control. Transgenic lines have further shown the reduced levels of MDA, H2O2, and proteolytic activity. Together, these findings suggest that overexpression of MuHSP70 plays an important role in improving abiotic stress tolerance and could be a crucial candidate gene for exploration in crop improvement program.
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Affiliation(s)
- Shikha Masand
- Plant Metabolic Engineering Laboratory, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, HP, 176061, India.,Academy of Scientific and Innovative Research, New Delhi, India
| | - Sudesh Kumar Yadav
- Plant Metabolic Engineering Laboratory, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, HP, 176061, India. .,Academy of Scientific and Innovative Research, New Delhi, India.
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Mulaudzi-Masuku T, Mutepe RD, Mukhoro OC, Faro A, Ndimba B. Identification and characterization of a heat-inducible Hsp70 gene from Sorghum bicolor which confers tolerance to thermal stress. Cell Stress Chaperones 2015; 20:793-804. [PMID: 26072391 PMCID: PMC4529866 DOI: 10.1007/s12192-015-0591-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2015] [Revised: 04/10/2015] [Accepted: 04/13/2015] [Indexed: 11/24/2022] Open
Abstract
This study describes the first detailed molecular characterization of the heat shock protein 70 (Hsp70) gene from Sorghum bicolor, MN1618 designated as SbHsp70-1. The full-length cDNA of SbHsp70-1 consists of 2524 bp with a 1950 bp open reading frame, which encodes a protein of 649 amino acids. SbHsp70-1 is a cytoplasmic protein with high homology to other plant Hsp70s, especially grain crops. Recombinant SbHsp70-1 was able to bind and hydrolyse ATP in a dose-dependent manner, suggesting that SbHsp70-1 functions as an ATPase. Immunoblot assays showed that the expression of SbHsp70-1 is induced at temperatures of 37, 45, and 4 °C but reduced at 42 °C. In addition, the SbHsp70-1 mRNA transcript is constitutively expressed in both leaves and stem but is significantly increased upon heat shock at 42 °C. Upon cold shock at 4 °C, SbHsp70-1 mRNA transcript level increased in the leaf, but no significant change was observed in the stem. In addition, expression of the pET28a-SbHsp70-1 construct in Escherichia coli cells under heat stress resulted in their survival even at higher temperature (65 °C). Our results suggest that SbHsp70-1 is a heat-inducible protein that confer thermal tolerance to bacterial cells and can be claimed as a promising target to study stress tolerance in crops.
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Affiliation(s)
- Takalani Mulaudzi-Masuku
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
- />Proteomics Unit, Agricultural Research Council, Infruitec-Nietvoorbij, Private Bag X5026, Stellenbosch, 7599 South Africa
| | - Rendani Daphney Mutepe
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
- />Proteomics Unit, Agricultural Research Council, Infruitec-Nietvoorbij, Private Bag X5026, Stellenbosch, 7599 South Africa
| | - Ofhani Christopher Mukhoro
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
| | - Andrew Faro
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
| | - Bongani Ndimba
- />Proteomics Research and Services Unit, Department of Biotechnology, University of the Western Cape, Level 2—New Life Sciences Building, Modderdam Road, Private Bag X17, Bellville, 7535 Cape Town South Africa
- />Proteomics Unit, Agricultural Research Council, Infruitec-Nietvoorbij, Private Bag X5026, Stellenbosch, 7599 South Africa
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Guo M, Lu JP, Zhai YF, Chai WG, Gong ZH, Lu MH. Genome-wide analysis, expression profile of heat shock factor gene family (CaHsfs) and characterisation of CaHsfA2 in pepper (Capsicum annuum L.). BMC PLANT BIOLOGY 2015; 15:151. [PMID: 26088319 PMCID: PMC4472255 DOI: 10.1186/s12870-015-0512-7] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2014] [Accepted: 04/28/2015] [Indexed: 05/18/2023]
Abstract
BACKGROUND Heat shock factors (Hsfs) play crucial roles in plant developmental and defence processes. The production and quality of pepper (Capsicum annuum L.), an economically important vegetable crop, are severely reduced by adverse environmental stress conditions, such as heat, salt and osmotic stress. Although the pepper genome has been fully sequenced, the characterization of the Hsf gene family under abiotic stress conditions remains incomplete. RESULTS A total of 25 CaHsf members were identified in the pepper genome by bioinformatics analysis and PCR assays. They were grouped into three classes, CaHsfA, B and C, based on highly conserved Hsf domains, were distributed over 11 of 12 chromosomes, with none found on chromosome 11, and all of them, except CaHsfA5, formed a protein-protein interaction network. According to the RNA-seq data of pepper cultivar CM334, most CaHsf members were expressed in at least one tissue among root, stem, leaf, pericarp and placenta. Quantitative real-time PCR assays showed that all of the CaHsfs responded to heat stress (40 °C for 2 h), except CaHsfC1 in thermotolerant line R9 leaves, and that the expression patterns were different from those in thermosensitive line B6. Many CaHsfs were also regulated by salt and osmotic stresses, as well as exogenous Ca(2+), putrescine, abscisic acid and methyl jasmonate. Additionally, CaHsfA2 was located in the nucleus and had transcriptional activity, consistent with the typical features of Hsfs. Time-course expression profiling of CaHsfA2 in response to heat stress revealed differences in its expression level and pattern between the pepper thermosensitive line B6 and thermotolerant line R9. CONCLUSIONS Twenty-five Hsf genes were identified in the pepper genome and most of them responded to heat, salt, osmotic stress, and exogenous substances, which provided potential clues for further analyses of CaHsfs functions in various kinds of abiotic stresses and of corresponding signal transduction pathways in pepper.
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Affiliation(s)
- Meng Guo
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R., China.
| | - Jin-Ping Lu
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R., China.
| | - Yu-Fei Zhai
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R., China.
| | - Wei-Guo Chai
- Institute of Vegetables, Hangzhou Academy of Agricultural Sciences, Hangzhou, Zhejiang, 310024, P. R., China.
| | - Zhen-Hui Gong
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R., China.
| | - Ming-Hui Lu
- College of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, P. R., China.
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Guo M, Liu JH, Lu JP, Zhai YF, Wang H, Gong ZH, Wang SB, Lu MH. Genome-wide analysis of the CaHsp20 gene family in pepper: comprehensive sequence and expression profile analysis under heat stress. FRONTIERS IN PLANT SCIENCE 2015. [PMID: 26483820 DOI: 10.3389/fpls.2015.00806.x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
The Hsp20 genes are present in all plant species and play important roles in alleviating heat stress and enhancing plant thermotolerance by preventing the irreversible aggregation of denaturing proteins. However, very little is known about the CaHsp20 gene family in pepper (Capsicum annuum L.), an important vegetable crop with character of temperate but thermosensitive. In this study, a total of 35 putative pepper Hsp20 genes (CaHsp20s) were identified and renamed on the basis of their molecular weight, and then their gene structure, genome location, gene duplication, phylogenetic relationship, and interaction network were also analyzed. The expression patterns of CaHsp20 genes in four different tissues (root, stem, leaf, and flower) from the thermotolerant line R9 under heat stress condition were measured using semi-quantitative RT-PCR. The transcripts of most CaHsp20 genes maintained a low level in all of the four tissues under normal temperature condition, but were highly induced by heat stress, while the expression of CaHsp16.6b, 16.7, and 23.8 were only detected in specific tissues and were not so sensitive to heat stress like other CaHsp20 genes. In addition, compared to those in thermotolerant line R9, the expression peak of most CaHsp20 genes in thermosensitive line B6 under heat stress was hysteretic, and several CaHsp20 genes (CaHsp16.4, 18.2a, 18.7, 21.2, 22.0, 25.8, and 25.9) showed higher expression levels in both line B6 and R9. These data suggest that the CaHsp20 genes may be involved in heat stress and defense responses in pepper, which provides the basis for further functional analyses of CaHsp20s in the formation of pepper acquired thermotoleance.
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Affiliation(s)
- Meng Guo
- Department of Vegetable Science, College of Horticulture, Northwest A&F University Yangling, China
| | - Jin-Hong Liu
- Department of Vegetable Science, College of Horticulture, Northwest A&F University Yangling, China
| | - Jin-Ping Lu
- Department of Vegetable Science, College of Horticulture, Northwest A&F University Yangling, China
| | - Yu-Fei Zhai
- Department of Vegetable Science, College of Horticulture, Northwest A&F University Yangling, China
| | - Hu Wang
- Department of Vegetable Science, College of Horticulture, Northwest A&F University Yangling, China
| | - Zhen-Hui Gong
- Department of Vegetable Science, College of Horticulture, Northwest A&F University Yangling, China
| | - Shu-Bin Wang
- Laboratory for Solanaceous Fruit Vegetable, Institute of Vegetable Crops, Jiangsu Academy of Agricultural Sciences Nanjing, China
| | - Ming-Hui Lu
- Department of Vegetable Science, College of Horticulture, Northwest A&F University Yangling, China
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Zhang L, Zhao HK, Dong QL, Zhang YY, Wang YM, Li HY, Xing GJ, Li QY, Dong YS. Genome-wide analysis and expression profiling under heat and drought treatments of HSP70 gene family in soybean (Glycine max L.). FRONTIERS IN PLANT SCIENCE 2015; 6:773. [PMID: 26442082 PMCID: PMC4585176 DOI: 10.3389/fpls.2015.00773] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Accepted: 09/09/2015] [Indexed: 05/03/2023]
Abstract
Heat shock proteins (HSPs) perform a fundamental role in protecting plants against abiotic stresses. Previous studies have made great efforts in the functional analysis of individual family members, but there has not yet been an overall analysis or expression profiling of the HSP70 gene family in soybeans (Glycine max L.). In this study, an investigation of the soybean genome revealed 61 putative HSP70 genes, which were evaluated. These genes were classified into eight sub-families, denoted I-VIII, based on a phylogenetic analysis. In each sub-family, the constituent parts of the gene structure and motif were relatively conserved. These GmHSP70 genes were distributed unequally on 17 of the 20 chromosomes. The analysis of the expression profiles showed that 53 of the 61 GmHSP70 genes were differentially expressed across the 14 tissues. However, most of the GmHSP70s were differentially expressed in a tissue-specific expression pattern. Furthermore, the expression of some of the duplicate genes was partially redundant, while others showed functional diversity. The quantitative real-time PCR (qRT-PCR) analysis of the 61 soybean HSP70 genes confirmed their stress-inducible expression patterns under both drought and heat stress. These findings provide a thorough overview of the evolution and modification of the GmHSP70 gene family, which will help to determine the functional characteristics of the HSP70 genes in soybean growth and development.
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Affiliation(s)
- Ling Zhang
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural SciencesChangchun, China
| | - Hong-Kun Zhao
- Crop Germplasm Institute, Jilin Academy of Agricultural SciencesGongzhuling, China
| | - Qian-Li Dong
- Department of Biology, Beijing Normal UniversityBeijing, China
| | - Yuan-Yu Zhang
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural SciencesChangchun, China
| | - Yu-Min Wang
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural SciencesChangchun, China
| | - Hai-Yun Li
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural SciencesChangchun, China
| | - Guo-Jie Xing
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural SciencesChangchun, China
| | - Qi-Yun Li
- Institute of Plant Protection, Jilin Academy of Agricultural SciencesGongzhuling, China
- *Correspondence: Qi-Yun Li, Institute of Plant Protection, Jilin Academy of Agricultural Sciences, No. 303 Kemaoxi Street, Gongzhuling, JiLin 136100, China
| | - Ying-Shan Dong
- Agro-Biotechnology Research Institute, Jilin Academy of Agricultural SciencesChangchun, China
- Ying-Shan Dong, Agro-Biotechnology Research Institute, Jilin Academy of Agricultural Sciences, No. 1363 Shengtai Street, Jing Yue District, ChangChun, JiLin 130033, China
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Guo M, Liu JH, Lu JP, Zhai YF, Wang H, Gong ZH, Wang SB, Lu MH. Genome-wide analysis of the CaHsp20 gene family in pepper: comprehensive sequence and expression profile analysis under heat stress. FRONTIERS IN PLANT SCIENCE 2015; 6:806. [PMID: 26483820 PMCID: PMC4589653 DOI: 10.3389/fpls.2015.00806] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Accepted: 09/16/2015] [Indexed: 05/20/2023]
Abstract
The Hsp20 genes are present in all plant species and play important roles in alleviating heat stress and enhancing plant thermotolerance by preventing the irreversible aggregation of denaturing proteins. However, very little is known about the CaHsp20 gene family in pepper (Capsicum annuum L.), an important vegetable crop with character of temperate but thermosensitive. In this study, a total of 35 putative pepper Hsp20 genes (CaHsp20s) were identified and renamed on the basis of their molecular weight, and then their gene structure, genome location, gene duplication, phylogenetic relationship, and interaction network were also analyzed. The expression patterns of CaHsp20 genes in four different tissues (root, stem, leaf, and flower) from the thermotolerant line R9 under heat stress condition were measured using semi-quantitative RT-PCR. The transcripts of most CaHsp20 genes maintained a low level in all of the four tissues under normal temperature condition, but were highly induced by heat stress, while the expression of CaHsp16.6b, 16.7, and 23.8 were only detected in specific tissues and were not so sensitive to heat stress like other CaHsp20 genes. In addition, compared to those in thermotolerant line R9, the expression peak of most CaHsp20 genes in thermosensitive line B6 under heat stress was hysteretic, and several CaHsp20 genes (CaHsp16.4, 18.2a, 18.7, 21.2, 22.0, 25.8, and 25.9) showed higher expression levels in both line B6 and R9. These data suggest that the CaHsp20 genes may be involved in heat stress and defense responses in pepper, which provides the basis for further functional analyses of CaHsp20s in the formation of pepper acquired thermotoleance.
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Affiliation(s)
- Meng Guo
- Department of Vegetable Science, College of Horticulture, Northwest A&F UniversityYangling, China
| | - Jin-Hong Liu
- Department of Vegetable Science, College of Horticulture, Northwest A&F UniversityYangling, China
| | - Jin-Ping Lu
- Department of Vegetable Science, College of Horticulture, Northwest A&F UniversityYangling, China
| | - Yu-Fei Zhai
- Department of Vegetable Science, College of Horticulture, Northwest A&F UniversityYangling, China
| | - Hu Wang
- Department of Vegetable Science, College of Horticulture, Northwest A&F UniversityYangling, China
| | - Zhen-Hui Gong
- Department of Vegetable Science, College of Horticulture, Northwest A&F UniversityYangling, China
- *Correspondence: Zhen-Hui Gong and Ming-Hui Lu, Department of Vegetable Science, College of Horticulture, Northwest A&F University, No. 3 Taicheng Road, Yangling, Shaanxi 712100, China ;
| | - Shu-Bin Wang
- Laboratory for Solanaceous Fruit Vegetable, Institute of Vegetable Crops, Jiangsu Academy of Agricultural SciencesNanjing, China
- Shu-Bin Wang, Laboratory for Solanaceous Fruit Vegetable, Institute of Vegetable Crops, Jiangsu Academy of Agricultural Sciences, No. 50 Zhongling Street, Nanjing, Jiangsu 210014, China
| | - Ming-Hui Lu
- Department of Vegetable Science, College of Horticulture, Northwest A&F UniversityYangling, China
- *Correspondence: Zhen-Hui Gong and Ming-Hui Lu, Department of Vegetable Science, College of Horticulture, Northwest A&F University, No. 3 Taicheng Road, Yangling, Shaanxi 712100, China ;
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