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Inaudi P, Mercurio LM, Marchis D, Bosusco A, Malandrino M, Abollino O, Favilli L, Bertinetti S, Giacomino A. Inorganic Characterization of Feeds Based on Processed Animal Protein Feeds. Molecules 2024; 29:3845. [PMID: 39202924 PMCID: PMC11356946 DOI: 10.3390/molecules29163845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Revised: 08/12/2024] [Accepted: 08/13/2024] [Indexed: 09/03/2024] Open
Abstract
The potential of utilizing inorganic constituents in processed animal proteins (PAPs) for species identification in animal feeds was investigated, with the aim of using these constituents to ensure the quality and authenticity of the products. This study aimed to quantify the inorganic content across various PAP species and assess whether inorganic analysis could effectively differentiate between PAP species, ultimately aiding in the identification of PAP fractions in animal feeds. Four types of PAPs, namely bovine, swine, poultry, and fish-based, were analyzed and compared to others made up of feathers of vegetal-based feed. Also, three insect-based PAPs (Cricket, Silkworm, Flour Moth) were considered in this study to evaluate the differences in terms of the nutrients present in this type of feed. Ionic chromatography (IC) was used to reveal the concentrations of NO3-, NO2, Cl-, and SO42-, and inductively coupled plasma optical emission spectroscopy (ICP-OES) to detect Al, Ca, Cd, Cr, Cu, Fe, K, Mg, Mn, Mo, Na, Ni, P, Si, Sr, Ti, and Zn. The application of multivariate chemometric techniques to the experimental results allowed us to determine the identification capability of the inorganic composition to identify correlations among the variables and to reveal similarities and differences among the different species. The results show the possibility of using this component for discriminating between different PAPS; in particular, fish PAPs are high in Cd, Sr, Na, and Mg content; swine PAPs have lower metal content due to high fat; feathers and vegetal feed have similar Al, Si, and Ni, but feathers are higher in Fe and Zn; and insect PATs have nutrient levels comparable to PAPs of other origins but are very high in Zn, Cu, and K.
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Affiliation(s)
- Paolo Inaudi
- Department of Drug Science and Technology, University of Torino, Via Giuria 9, 10125 Torino, Italy; (O.A.); (L.F.)
| | - Luca Maria Mercurio
- Department of Chemistry, University of Torino, Via Giuria 5, 10125 Torino, Italy; (L.M.M.); (M.M.); (S.B.)
| | - Daniela Marchis
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta (IZSPLV), 10100 Torino, Italy; (D.M.); (A.B.)
| | - Andrea Bosusco
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta (IZSPLV), 10100 Torino, Italy; (D.M.); (A.B.)
| | - Mery Malandrino
- Department of Chemistry, University of Torino, Via Giuria 5, 10125 Torino, Italy; (L.M.M.); (M.M.); (S.B.)
| | - Ornella Abollino
- Department of Drug Science and Technology, University of Torino, Via Giuria 9, 10125 Torino, Italy; (O.A.); (L.F.)
| | - Laura Favilli
- Department of Drug Science and Technology, University of Torino, Via Giuria 9, 10125 Torino, Italy; (O.A.); (L.F.)
| | - Stefano Bertinetti
- Department of Chemistry, University of Torino, Via Giuria 5, 10125 Torino, Italy; (L.M.M.); (M.M.); (S.B.)
| | - Agnese Giacomino
- Department of Drug Science and Technology, University of Torino, Via Giuria 9, 10125 Torino, Italy; (O.A.); (L.F.)
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Melchior PP, Reiss E, Payne Z, Vuong N, Hovorka K, Lindsay HL, Diaz GR, Gaire T, Noyes N. Analysis of the northern pitcher plant (Sarracenia purpurea L.) phytotelm bacteriome throughout a temperate region growing season. PLoS One 2024; 19:e0306602. [PMID: 38995889 PMCID: PMC11244801 DOI: 10.1371/journal.pone.0306602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 06/20/2024] [Indexed: 07/14/2024] Open
Abstract
The insectivorous Northern Pitcher Plant, Sarracenia purpurea, recruits a dynamic biotic community in the rainwater collected by its pitcher-shaped leaves. Insect capture and degradation within the pitcher fluid (phytotelma) has been well documented as a mechanism for supplementing the plant's nitrogen, phosphorous, and micronutrient requirements. Metagenomic studies have shown a diverse microbiome in this phytotelm environment, including taxa that contribute metabolically to prey digestion. In this investigation, we used high-throughput 16S rDNA sequencing and bioinformatics to analyze the S. purpurea phytotelm bacteriome as it changes through the growing season (May-September) in plants from the north-central region of the species' native range. Additionally, we used molecular techniques to detect and quantify bacterial nitrogenase genes (nifH) in all phytotelm samples to explore the hypothesis that diazotrophy is an additional mechanism of supplying biologically available nitrogen to S. purpurea. The results of this study indicate that while prokaryote diversity remains relatively stable in plants at different locations within our region, diversity changes significantly as the growing season progresses. Furthermore, nifH genes were detected at biologically significant concentrations in one hundred percent of samples, suggesting that nitrogen fixation may be an important contributor to the S. purpurea nutrient budget.
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Affiliation(s)
- Paul P. Melchior
- Department of Biology, North Hennepin Community College, Brooklyn Park, Minnesota, United States of America
- Department of Biology, Bemidji State University, Bemidji, Minnesota, United States of America
- Department of Marine Science, Atlantic Technological University, Galway, Republic of Ireland
- Department of Veterinary Medicine, University of Minnesota, St. Paul, Minnesota, United States of America
| | - Emma Reiss
- Department of Biology, North Hennepin Community College, Brooklyn Park, Minnesota, United States of America
- Department of Biology, Bemidji State University, Bemidji, Minnesota, United States of America
| | - Zachary Payne
- Department of Biology, North Hennepin Community College, Brooklyn Park, Minnesota, United States of America
- Department of Biology, Bemidji State University, Bemidji, Minnesota, United States of America
| | - Nhi Vuong
- Department of Biology, North Hennepin Community College, Brooklyn Park, Minnesota, United States of America
- Department of Biology, Bemidji State University, Bemidji, Minnesota, United States of America
| | - Kari Hovorka
- Department of Biology, North Hennepin Community College, Brooklyn Park, Minnesota, United States of America
- Department of Biology, Bemidji State University, Bemidji, Minnesota, United States of America
| | - Hunter L. Lindsay
- Department of Biology, North Hennepin Community College, Brooklyn Park, Minnesota, United States of America
- Department of Biology, Bemidji State University, Bemidji, Minnesota, United States of America
| | - Gerardo R. Diaz
- Department of Veterinary Medicine, University of Minnesota, St. Paul, Minnesota, United States of America
| | - Tara Gaire
- Department of Veterinary Medicine, University of Minnesota, St. Paul, Minnesota, United States of America
| | - Noelle Noyes
- Department of Veterinary Medicine, University of Minnesota, St. Paul, Minnesota, United States of America
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Ahsan SM, Injamum-Ul-Hoque M, Das AK, Rahman MM, Mollah MMI, Paul NC, Choi HW. Plant-Entomopathogenic Fungi Interaction: Recent Progress and Future Prospects on Endophytism-Mediated Growth Promotion and Biocontrol. PLANTS (BASEL, SWITZERLAND) 2024; 13:1420. [PMID: 38794490 PMCID: PMC11124879 DOI: 10.3390/plants13101420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/17/2024] [Accepted: 05/18/2024] [Indexed: 05/26/2024]
Abstract
Entomopathogenic fungi, often acknowledged primarily for their insecticidal properties, fulfill diverse roles within ecosystems. These roles encompass endophytism, antagonism against plant diseases, promotion of the growth of plants, and inhabitation of the rhizosphere, occurring both naturally and upon artificial inoculation, as substantiated by a growing body of contemporary research. Numerous studies have highlighted the beneficial aspects of endophytic colonization. This review aims to systematically organize information concerning the direct (nutrient acquisition and production of phytohormones) and indirect (resistance induction, antibiotic and secondary metabolite production, siderophore production, and mitigation of abiotic and biotic stresses) implications of endophytic colonization. Furthermore, a thorough discussion of these mechanisms is provided. Several challenges, including isolation complexities, classification of novel strains, and the impact of terrestrial location, vegetation type, and anthropogenic reluctance to use fungal entomopathogens, have been recognized as hurdles. However, recent advancements in biotechnology within microbial research hold promising solutions to many of these challenges. Ultimately, the current constraints delineate potential future avenues for leveraging endophytic fungal entomopathogens as dual microbial control agents.
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Affiliation(s)
- S. M. Ahsan
- Department of Plant Medicals, Andong National University, Andong 36729, Republic of Korea;
| | - Md. Injamum-Ul-Hoque
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea; (M.I.-U.-H.); (A.K.D.)
| | - Ashim Kumar Das
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Republic of Korea; (M.I.-U.-H.); (A.K.D.)
| | - Md. Mezanur Rahman
- Department of Plant and Soil Science, Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX 79409, USA;
| | - Md. Mahi Imam Mollah
- Department of Entomology, Patuakhali Science and Technology University, Dumki, Patuakhali 8602, Bangladesh;
| | - Narayan Chandra Paul
- Kumho Life Science Laboratory, Chonnam National University, Gwangju 61186, Republic of Korea;
| | - Hyong Woo Choi
- Department of Plant Medicals, Andong National University, Andong 36729, Republic of Korea;
- Institute of Cannabis Biotechnology, Andong National University, Andong 36729, Republic of Korea
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Shamjana U, Vasu DA, Hembrom PS, Nayak K, Grace T. The role of insect gut microbiota in host fitness, detoxification and nutrient supplementation. Antonie Van Leeuwenhoek 2024; 117:71. [PMID: 38668783 DOI: 10.1007/s10482-024-01970-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 04/15/2024] [Indexed: 05/01/2024]
Abstract
Insects are incredibly diverse, ubiquitous and have successfully flourished out of the dynamic and often unpredictable nature of evolutionary processes. The resident microbiome has accompanied the physical and biological adaptations that enable their continued survival and proliferation in a wide array of environments. The host insect and microbiome's bidirectional relationship exhibits their capability to influence each other's physiology, behavior and characteristics. Insects are reported to rely directly on the microbial community to break down complex food, adapt to nutrient-deficit environments, protect themselves from natural adversaries and control the expression of social behavior. High-throughput metagenomic approaches have enhanced the potential for determining the abundance, composition, diversity and functional activities of microbial fauna associated with insect hosts, enabling in-depth investigation into insect-microbe interactions. We undertook a review of some of the major advances in the field of metagenomics, focusing on insect-microbe interaction, diversity and composition of resident microbiota, the functional capability of endosymbionts and discussions on different symbiotic relationships. The review aims to be a valuable resource on insect gut symbiotic microbiota by providing a comprehensive understanding of how insect gut symbionts systematically perform a range of functions, viz., insecticide degradation, nutritional support and immune fitness. A thorough understanding of manipulating specific gut symbionts may aid in developing advanced insect-associated research to attain health and design strategies for pest management.
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Affiliation(s)
- U Shamjana
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Kasaragod, Kerala, 671316, India
| | - Deepa Azhchath Vasu
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Kasaragod, Kerala, 671316, India
| | - Preety Sweta Hembrom
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Kasaragod, Kerala, 671316, India
| | - Karunakar Nayak
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Kasaragod, Kerala, 671316, India
| | - Tony Grace
- Department of Genomic Science, School of Biological Sciences, Central University of Kerala, Kasaragod, Kerala, 671316, India.
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Jenull S, Bauer T, Silbermayr K, Dreer M, Stark TD, Ehling-Schulz M. The toxicological spectrum of the Bacillus cereus toxin cereulide points towards niche-specific specialisation. Environ Microbiol 2023; 25:2231-2249. [PMID: 37354053 DOI: 10.1111/1462-2920.16454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 06/06/2023] [Indexed: 06/26/2023]
Abstract
Most microbes share their environmental niches with very different forms of life thereby engaging in specialised relationships to enable their persistence. The bacterium Bacillus cereus occurs ubiquitously in the environment with certain strain backgrounds causing foodborne and opportunistic infections in humans. The emetic lineage of B. cereus is capable of producing the toxin cereulide, which evokes emetic illnesses. Although food products favouring the accumulation of cereulide are known, the ecological role of cereulide and the environmental niche of emetic B. cereus remain elusive. To better understand the ecology of cereulide-producing B. cereus, we systematically assayed the toxicological spectrum of cereulide on a variety of organisms belonging to different kingdoms. As cereulide is a potassium ionophore, we further tested the effect of environmental potassium levels on the action of cereulide. We found that adverse effects of cereulide exposure are species-specific, which can be exacerbated with increased environmental potassium. Additionally, we demonstrate that cereulide is produced within an insect cadaver indicating its potential ecological function for a saprophytic lifestyle. Collectively, distinct cereulide susceptibilities of other organisms may reflect its role in enabling competitive niche specialization of emetic B. cereus.
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Affiliation(s)
- Sabrina Jenull
- Institute of Microbiology, Department of Pathobiology, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Tobias Bauer
- Institute of Microbiology, Department of Pathobiology, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Katja Silbermayr
- Institute of Parasitology, Department of Pathobiology, University of Veterinary Medicine Vienna, Vienna, Austria
| | - Maximilian Dreer
- Department of Functional and Evolutionary Ecology, Archaea Biology and Ecogenomics Unit, University of Vienna, Vienna, Austria
| | - Timo D Stark
- Food Chemistry and Molecular Sensory Science, Technical University of Munich, Freising, Germany
| | - Monika Ehling-Schulz
- Institute of Microbiology, Department of Pathobiology, University of Veterinary Medicine Vienna, Vienna, Austria
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Piña-Torres IH, Dávila-Berumen F, González-Hernández GA, Torres-Guzmán JC, Padilla-Guerrero IE. Hyphal Growth and Conidia Germination Are Induced by Phytohormones in the Root Colonizing and Plant Growth Promoting Fungus Metarhizium guizhouense. J Fungi (Basel) 2023; 9:945. [PMID: 37755053 PMCID: PMC10532501 DOI: 10.3390/jof9090945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 09/13/2023] [Accepted: 09/15/2023] [Indexed: 09/28/2023] Open
Abstract
Beneficial associations are very important for plants and soil-dwelling microorganisms in different ecological niches, where communication by chemical signals is relevant. Among the chemical signals, the release of phytohormones by plants is important to establish beneficial associations with fungi, and a recently described association is that of the entomopathogenic ascomycete fungus Metarhizium with plants. Here, we evaluated the effect of four different phytohormones, synthetic strigolactone (GR24), sorgolactone (SorL), 3-indolacetic acid (IAA) and gibberellic acid (GA3), on the fungus Metarhizium guizhouense strain HA11-2, where the germination rate and hyphal elongation were determined at three different times. All phytohormones had a positive effect on germination, with GA3 showing the greatest effect, and for hyphal length, on average, the group treated with synthetic strigolactone GR24 showed greater average hyphal length at 10 h of induction. This work expands the knowledge of the effect of phytohormones on the fungus M. guizhouense, as possible chemical signals for the rapid establishment of the fungus-plant association.
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Affiliation(s)
| | | | | | | | - Israel Enrique Padilla-Guerrero
- Departamento de Biología, División de Ciencias Naturales y Exactas, Universidad de Guanajuato, Noria Alta s/n, Guanajuato 36050, Mexico; (I.H.P.-T.); (F.D.-B.); (G.A.G.-H.); (J.C.T.-G.)
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Sharma I, Raina A, Choudhary M, Apra, Kaul S, Dhar MK. Fungal endophyte bioinoculants as a green alternative towards sustainable agriculture. Heliyon 2023; 9:e19487. [PMID: 37662754 PMCID: PMC10472071 DOI: 10.1016/j.heliyon.2023.e19487] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 08/14/2023] [Accepted: 08/24/2023] [Indexed: 09/05/2023] Open
Abstract
Over the past half century, limited use of synthetic fertilizers, pesticides, and conservation of the environment and natural resources have become the interdependent goals of sustainable agriculture. These practices support agriculture sustainability with less environmental and climatic impacts. Therefore, there is an upsurge in the need to introduce compatible booster methods for maximizing net production. The best straightforward strategy is to explore and utilize plant-associated beneficial microorganisms and their products. Bioinoculants are bioformulations consisting of selected microbial strains on a suitable carrier used in the enhancement of crop production. Fungal endophytes used as bioinoculants confer various benefits to the host, such as protection against pathogens by eliciting immune response, mineralization of essential nutrients, and promoting plant growth. Besides, they also produce various bioactive metabolites, phytohormones, and volatile organic compounds. To design various bioformulations, transdisciplinary approaches like genomics, transcriptomics, metabolomics, proteomics, and microbiome modulation strategies like gene editing and metabolic reconstruction have been explored. These studies will refine the existing knowledge on the diversity, phylogeny and beneficial traits of the microbes. This will also help in synthesizing microbial consortia by evaluating the role of structural and functional elements of communities in a controlled manner. The present review summarizes the beneficial aspects associated with fungal endophytes for capitalizing agricultural outputs, enlists various multi-omics techniques for understanding and modulating the mechanism involved in endophytism and the generation of new bioformulations for providing novel solutions for the enhancement of crop production.
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Affiliation(s)
- Itika Sharma
- Fungal Biotechnology Laboratory, School of Biotechnology, University of Jammu, Jammu, Jammu and Kashmir, 180006, India
| | - Ashish Raina
- Fungal Biotechnology Laboratory, School of Biotechnology, University of Jammu, Jammu, Jammu and Kashmir, 180006, India
| | - Malvi Choudhary
- Fungal Biotechnology Laboratory, School of Biotechnology, University of Jammu, Jammu, Jammu and Kashmir, 180006, India
| | - Apra
- Fungal Biotechnology Laboratory, School of Biotechnology, University of Jammu, Jammu, Jammu and Kashmir, 180006, India
| | - Sanjana Kaul
- Fungal Biotechnology Laboratory, School of Biotechnology, University of Jammu, Jammu, Jammu and Kashmir, 180006, India
| | - Manoj K. Dhar
- Plant Genome Research Laboratory, School of Biotechnology, University of Jammu, Jammu, Jammu and Kashmir, 180006, India
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Carroll A, Fitzpatrick M, Hodge S. The Effects of Two Organic Soil Amendments, Biochar and Insect Frass Fertilizer, on Shoot Growth of Cereal Seedlings. PLANTS (BASEL, SWITZERLAND) 2023; 12:1071. [PMID: 36903931 PMCID: PMC10004817 DOI: 10.3390/plants12051071] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Revised: 02/23/2023] [Accepted: 02/24/2023] [Indexed: 06/18/2023]
Abstract
To mitigate the environmental harm associated with high-input agriculture, arable farmers are increasingly required to maintain productivity while reducing inputs of synthetic fertilizers. Thus, a diverse range of organic products are now being investigated in terms of their value as alternative fertilizers and soil amendments. This study used a series of glasshouse trials to investigate the effects of an insect frass-based fertilizer derived from black soldier fly waste [HexaFrass™, Meath, Ireland] and biochar on four cereals grown in Ireland (barley, oats, triticale, spelt) as animal feed and for human consumption. In general, the application of low quantities of HexaFrass™ resulted in significant increases in shoot growth in all four cereal species, along with increased foliage concentrations of NPK and SPAD levels (a measure of chlorophyll density). These positive effects of HexaFrass™ on shoot growth were observed, however, only when a potting mix with low basal nutrients was used. Additionally, excessive application of HexaFrass™ resulted in reduced shoot growth and, in some cases, seedling mortality. The application of finely ground or crushed biochar produced from four different feedstocks (Ulex, Juncus, woodchip, olive stone) had no consistent positive or negative effects on cereal shoot growth. Overall, our results indicate that insect frass-based fertilizers have good potential in low-input, organic, or regenerative cereal production systems. Based on our results, biochar appears to have less potential as a plant growth promoting product, but could be used as a tool for lowering whole-farm carbon budgets by providing a simplistic means of storing carbon in farm soils.
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Baharin A, Ting TY, Goh HH. Omics Approaches in Uncovering Molecular Evolution and Physiology of Botanical Carnivory. PLANTS (BASEL, SWITZERLAND) 2023; 12:408. [PMID: 36679121 PMCID: PMC9867145 DOI: 10.3390/plants12020408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/09/2023] [Accepted: 01/09/2023] [Indexed: 06/17/2023]
Abstract
Systems biology has been increasingly applied with multiple omics for a holistic comprehension of complex biological systems beyond the reductionist approach that focuses on individual molecules. Different high-throughput omics approaches, including genomics, transcriptomics, metagenomics, proteomics, and metabolomics have been implemented to study the molecular mechanisms of botanical carnivory. This covers almost all orders of carnivorous plants, namely Caryophyllales, Ericales, Lamiales, and Oxalidales, except Poales. Studies using single-omics or integrated multi-omics elucidate the compositional changes in nucleic acids, proteins, and metabolites. The omics studies on carnivorous plants have led to insights into the carnivory origin and evolution, such as prey capture and digestion as well as the physiological adaptations of trap organ formation. Our understandings of botanical carnivory are further enhanced by the discoveries of digestive enzymes and transporter proteins that aid in efficient nutrient sequestration alongside dynamic molecular responses to prey. Metagenomics studies revealed the mutualistic relationships between microbes and carnivorous plants. Lastly, in silico analysis accelerated the functional characterization of new molecules from carnivorous plants. These studies have provided invaluable molecular data for systems understanding of carnivorous plants. More studies are needed to cover the diverse species with convergent evolution of botanical carnivory.
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Ravee R, Baharin A, Cho WT, Ting TY, Goh HH. Protease activity is maintained in Nepenthes ampullaria digestive fluids depleted of endogenous proteins with compositional changes. PHYSIOLOGIA PLANTARUM 2021; 173:1967-1978. [PMID: 34455610 DOI: 10.1111/ppl.13540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 08/22/2021] [Indexed: 06/13/2023]
Abstract
Nepenthes ampullaria is a unique carnivorous tropical pitcher plant with the detritivorous capability of sequestering nutrients from leaf litter apart from being insectivorous. The changes in the protein composition and protease activity of its pitcher fluids during the early opening of pitchers (D0 and D3C) were investigated via a proteomics approach and a controlled protein depletion experiment (D3L). A total of 193 proteins were identified. Common proteins such as pathogenesis-related protein, proteases (Nep [EC:3.4.23.12], SCP [EC:3.4.16.-]), peroxidase [EC:1.11.1.7], GDSL esterase/lipase [EC:3.1.1.-], and purple acid phosphatase [EC:3.1.3.2] were found in high abundance in the D0 pitchers and were replenished in D3L samples. This reflects their importance for biological processes upon pitcher opening. Meanwhile, prey-inducible chitinases [EC:3.2.1.14] were found in D0 but not in D3C and D3L samples, which suggests their degradation in the absence of prey. Protease activity assays demonstrated the replenishment of proteases in D3L with similar levels of proteolytic activities to that of D3C samples. This supports a feedback mechanism and signaling in the molecular regulation of endogenous protein secretion, turnover, and activity in Nepenthes pitcher fluids. Furthermore, we also discovered several new enzymes (XTH [EC:2.4.1.207], PAE [EC:3.1.1.98]) with possible functions in cell wall degradation that could contribute to the detritivory habit of N. ampullaria.
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Affiliation(s)
- Rishiesvari Ravee
- Institute of Systems Biology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Anis Baharin
- Institute of Systems Biology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Weng-Tim Cho
- Institute of Systems Biology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Tiew-Yik Ting
- Institute of Systems Biology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Hoe-Han Goh
- Institute of Systems Biology, Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
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Wongsorn D, Surasilp T, Rattanasuk S. Effects of Edible Insects on the Mycelium Formation of Cordyceps militaris. Pak J Biol Sci 2021; 24:881-887. [PMID: 34486355 DOI: 10.3923/pjbs.2021.881.887] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
<b>Background and Objective:</b> <i>Cordyceps militaris </i>is a potential edible medicinal mushroom which containing various biological activity such as anti-inflammatory, anti-ageing, anti-protozoal and anti-microbial. The compositions of <i>C. militaris</i> media were composed of carbon source, nitrogen source and other additives. This research aimed to evaluate the effect of edible insects on the <i>C. militaris </i>mycelium formation. <b>Materials and Methods:</b> Seven edible insects including <i>Bombyx mori </i>L., <i>Samia ricini</i> D., <i>Acheta domesticus</i> L., <i>Gryllus bimaculatus</i> De Geer, <i>Tenebrio molitor</i> L., <i>Rhynchophorus ferrugineus</i> and <i>Lethocerus indicus</i> were used as nitrogen source supplemented in Potato Dextrose Agar (PDA) and the mycelium formation of each edible insects at day 7, 14 and 21 were recorded. <b>Results:</b> The results of nitrogen source from a boiled edible insect at day 21 indicated that the highest colony diameter at 88.00 mm was obtained when cultured with PDA+<i>B. mori</i> L. The results of nitrogen source from a dried edible insect at day 21 presented that the highest diameter at 84.33 mm was obtained from cultured using PDA+<i>A. domesticus</i> L. <b>Conclusion:</b> The suitable boiled and dried edible insects for the supplement in PDA were boiled <i>B. mori</i> L. and dried <i>A. domesticus </i>L. This is the first report about PDA supplemented with edible insects that can be increased the <i>C. militaris</i> mycelium formation which the initial stage that important for <i>C. militaris </i>cultivation.
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Re-vitalizing of endophytic microbes for soil health management and plant protection. 3 Biotech 2021; 11:399. [PMID: 34422540 DOI: 10.1007/s13205-021-02931-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2021] [Accepted: 07/15/2021] [Indexed: 12/18/2022] Open
Abstract
Soil health management and increase crop productivity are challenging issues for researchers and scientists. Many research publications have given multiple technological solutions for improving soil health and crop productivity but main problem is sustainability of those technologies under field condition and different agro-climatic zone. Due to the random industrialization, deforestation, mining and other environmental factor reduce soil fertility and human health. Many alternative options e.g., crop rotation, green manuring, integrated farming, biofertilizer (plant-growth-promoting microorganism, microbial consortium of rhizosphere soils), and vermicomposting are available for adapting and improving the soil heath and crop productivity by farmers. Recent trends of new research dimension for sustainable agriculture, endophytic microbes and its consortium is one of the better alternative for increasing crop productivity, soil health and fertility management. However, current trends are focuses on the endophytic microbes, which are present mostly in all plant species. Endophytic microbes are isolated from plant parts-root, shoot, leaf, flower and seeds which have very potential ability of plant growth promotion and bio-controlling agent for enhancing plant growth and development. Mostly plant endophytes showed multi-dimensional (synergistic, mutualistic, symbiotic etc.) interactions within the host plants. It promotes the plant growth, protects from pathogen, and induces resistance against biotic and abiotic environmental stresses, and improves the soil fertility. Till date, most of the scientific research has been done on assuming that interaction of plant endophytes with the host is similar like the plant-growth-promoting microorganism (PGPM). It would be very interesting to explore the functional properties of plant endophytes to modulate the essential gene expression during biotic and abiotic stresses. Endophytes have the ability to induce the soil fertility by improving soil essential nutrient, enzymatic activity and influence the other physiochemical property. In this study, we have discussed details about functional properties of plant endophytes and their mechanism for enhancing plant productivity and soil health and fertility management under climate-resilient agricultural practices. Our main objective is to promote and explore the beneficial plant endophytes for enhancing sustainable agricultural productivity.
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Leroy C, Maes AQ, Louisanna E, Schimann H, Séjalon-Delmas N. Taxonomic, phylogenetic and functional diversity of root-associated fungi in bromeliads: effects of host identity, life forms and nutritional modes. THE NEW PHYTOLOGIST 2021; 231:1195-1209. [PMID: 33605460 DOI: 10.1111/nph.17288] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 02/12/2021] [Indexed: 06/12/2023]
Abstract
Bromeliads represent a major component of neotropical forests and encompass a considerable diversity of life forms and nutritional modes. Bromeliads explore highly stressful habitats and root-associated fungi may play a crucial role in this, but the driving factors and variations in root-associated fungi remain largely unknown. We explored root-associated fungal communities in 17 bromeliad species and their variations linked to host identity, life forms and nutritional modes by using ITS1 gene-based high-throughput sequencing and by characterizing fungal functional guilds. We found a dual association of mycorrhizal and nonmycorrhizal fungi. The different species, life forms and nutritional modes among bromeliad hosts had fungal communities that differ in their taxonomic and functional composition. Specifically, roots of epiphytic bromeliads had more endophytic fungi and dark septate endophytes and fewer mycorrhizal fungi than terrestrial bromeliads and lithophytes. Our results contribute to a fundamental knowledge base on different fungal groups in previously undescribed Bromeliaceae. The diverse root-associated fungal communities in bromeliads may enhance plant fitness in both stressful and nutrient-poor environments and may give more flexibility to the plants to adapt to changing environmental conditions.
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Affiliation(s)
- Céline Leroy
- AMAP, CIRAD, CNRS, INRAE, IRD, Univ Montpellier, Montpellier, 34000, France
- UMR EcoFoG, CNRS, CIRAD, AgroParisTech, INRAE, Université des Antilles, Université de Guyane, Kourou, 97310, France
| | | | - Eliane Louisanna
- UMR EcoFoG, CNRS, CIRAD, AgroParisTech, INRAE, Université des Antilles, Université de Guyane, Kourou, 97310, France
| | - Heidy Schimann
- UMR EcoFoG, CNRS, CIRAD, AgroParisTech, INRAE, Université des Antilles, Université de Guyane, Kourou, 97310, France
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White JF, Kingsley KL, Zhang Q, Verma R, Obi N, Dvinskikh S, Elmore MT, Verma SK, Gond SK, Kowalski KP. Review: Endophytic microbes and their potential applications in crop management. PEST MANAGEMENT SCIENCE 2019; 75:2558-2565. [PMID: 31228333 PMCID: PMC6771842 DOI: 10.1002/ps.5527] [Citation(s) in RCA: 153] [Impact Index Per Article: 30.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Revised: 06/19/2019] [Accepted: 06/20/2019] [Indexed: 05/06/2023]
Abstract
Endophytes are microbes (mostly bacteria and fungi) present asymptomatically in plants. Endophytic microbes are often functional in that they may carry nutrients from the soil into plants, modulate plant development, increase stress tolerance of plants, suppress virulence in pathogens, increase disease resistance in plants, and suppress development of competitor plant species. Endophytic microbes have been shown to: (i) obtain nutrients in soils and transfer nutrients to plants in the rhizophagy cycle and other nutrient-transfer symbioses; (ii) increase plant growth and development; (iii) reduce oxidative stress of hosts; (iv) protect plants from disease; (v) deter feeding by herbivores; and (vi) suppress growth of competitor plant species. Because of the effective functions of endophytic microbes, we suggest that endophytic microbes may significantly reduce use of agrochemicals (fertilizers, fungicides, insecticides, and herbicides) in the cultivation of crop plants. The loss of endophytic microbes from crop plants during domestication and long-term cultivation could be remedied by transfer of endophytes from wild relatives of crops to crop species. Increasing atmospheric carbon dioxide levels could reduce the efficiency of the rhizophagy cycle due to repression of reactive oxygen used to extract nutrients from microbes in roots. © 2019 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- James F White
- Department of Plant BiologyRutgers UniversityNew BrunswickNJUSA
| | | | - Qiuwei Zhang
- Department of Plant BiologyRutgers UniversityNew BrunswickNJUSA
| | - Rajan Verma
- Department of Plant BiologyRutgers UniversityNew BrunswickNJUSA
| | - Nkolika Obi
- Department of Plant BiologyRutgers UniversityNew BrunswickNJUSA
| | - Sofia Dvinskikh
- Department of Plant BiologyRutgers UniversityNew BrunswickNJUSA
| | | | - Satish K Verma
- Centre of Advanced Study in BotanyBanaras Hindu UniversityVaranasiIndia
| | - Surendra K Gond
- Centre of Advanced Study in BotanyBanaras Hindu UniversityVaranasiIndia
| | - Kurt P Kowalski
- U.S. Geological SurveyGreat Lakes Science CenterClevelandOHUSA
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Martin JS, Bulmer MS. A Lab-Based Study of Temperate Forest Termite Impacts on Two Common Wood-Rot Fungi. ENVIRONMENTAL ENTOMOLOGY 2018; 47:1388-1393. [PMID: 30192929 DOI: 10.1093/ee/nvy122] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2018] [Indexed: 06/08/2023]
Abstract
Termites and fungi are the primary decomposers of dead wood. Interactions between wood-feeding termites and wood-rot fungi are inevitable given their shared food source. Termites have developed multiple defense strategies against infectious fungi, such as Metarhizium spp., that include antifungal proteins in their saliva and fungal inhibition properties in their gut. The antifungal properties of termite salivary secretions depend on β-1,3-glucanases that are likely to be effective against a broad spectrum of filamentous fungi. Given the overlap in niches, there is opportunity for interference competition between termites and wood-rot fungi to occur. Here we demonstrate that β-1,3-glucanases in the saliva and the antifungal properties of the gut of the eastern subterranean termite Reticulitermes flavipes (Kollar) (Blattodea: Rhinotermitidae) affects the growth of two common wood-rot fungi, Gloeophyllum trabeum Persoon (Murrill) (Gloeophyllales: Gloeophyllaceae) and Phanerochaete chrysosporium (Burdsall) (Polyporales: Phanerochaetaceae).
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Affiliation(s)
- Jason S Martin
- Department of Biological Sciences, Towson University, Towson, MD
| | - Mark S Bulmer
- Department of Biological Sciences, Towson University, Towson, MD
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Ravee R, Mohd Salleh F‘I, Goh HH. Discovery of digestive enzymes in carnivorous plants with focus on proteases. PeerJ 2018; 6:e4914. [PMID: 29888132 PMCID: PMC5993016 DOI: 10.7717/peerj.4914] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Accepted: 05/16/2018] [Indexed: 01/30/2023] Open
Abstract
BACKGROUND Carnivorous plants have been fascinating researchers with their unique characters and bioinspired applications. These include medicinal trait of some carnivorous plants with potentials for pharmaceutical industry. METHODS This review will cover recent progress based on current studies on digestive enzymes secreted by different genera of carnivorous plants: Drosera (sundews), Dionaea (Venus flytrap), Nepenthes (tropical pitcher plants), Sarracenia (North American pitcher plants), Cephalotus (Australian pitcher plants), Genlisea (corkscrew plants), and Utricularia (bladderworts). RESULTS Since the discovery of secreted protease nepenthesin in Nepenthes pitcher, digestive enzymes from carnivorous plants have been the focus of many studies. Recent genomics approaches have accelerated digestive enzyme discovery. Furthermore, the advancement in recombinant technology and protein purification helped in the identification and characterisation of enzymes in carnivorous plants. DISCUSSION These different aspects will be described and discussed in this review with focus on the role of secreted plant proteases and their potential industrial applications.
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Affiliation(s)
- Rishiesvari Ravee
- Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Faris ‘Imadi Mohd Salleh
- Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
| | - Hoe-Han Goh
- Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia
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Leroy C, Jauneau A, Martinez Y, Cabin-Flaman A, Gibouin D, Orivel J, Séjalon-Delmas N. Exploring fungus-plant N transfer in a tripartite ant-plant-fungus mutualism. ANNALS OF BOTANY 2017; 120:417-426. [PMID: 28633407 PMCID: PMC5591417 DOI: 10.1093/aob/mcx064] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 02/20/2017] [Indexed: 05/20/2023]
Abstract
BACKGROUND AND AIMS The plant Hirtella physophora, the ant Allomerus decemarticulatus and a fungus, Trimmatostroma sp., form a tripartite association. The ants manipulate both the plant trichomes and the fungus to build galleries under the stems of their host plant used to capture prey. In addition to its structural role, the fungus also improves nutrient uptake by the host plant. But it still remains unclear whether the fungus plays an indirect or a direct role in transferring nutrients to the plant. This study aimed to trace the transfer of N from the fungus to the plant's stem tissue. METHODS Optical microscopy and transmission electron microscopy (TEM) were used to investigate the presence of fungal hyphae in the stem tissues. Then, a 15N-labelling experiment was combined with a nanoscale secondary-ion mass spectrometry (NanoSIMS 50) isotopic imaging approach to trace the movement of added 15N from the fungus to plant tissues. KEY RESULTS The TEM images clearly showed hyphae inside the stem tissue in the cellular compartment. Also, fungal hyphae were seen perforating the wall of the parenchyma cell. The 15N provisioning of the fungus in the galleries resulted in significant enrichment of the 15N signature of the plant's leaves 1 d after the 15N-labelling solution was deposited on the fungus-bearing trap. Finally, NanoSIMS imaging proved that nitrogen was transferred biotrophically from the fungus to the stem tissue. CONCLUSIONS This study provides evidence that the fungi are connected endophytically to an ant-plant system and actively transfer nitrogen from 15N-labelling solution to the plant's stem tissues. Overall, this study underlines how complex the trophic structure of ant-plant interactions is due to the presence of the fungus and provides insight into the possibly important nutritional aspects and tradeoffs involved in myrmecophyte-ant mutualisms.
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Affiliation(s)
- Céline Leroy
- AMAP, IRD, CIRAD, CNRS, INRA, Université Montpellier, Montpellier, France
- For correspondence. E-mail
| | - Alain Jauneau
- CNRS, FR3450 Fédération de Recherches Agrobiosciences Interactions et Biodiversité, Plateforme TRI d’imagerie cellulaire de Toulouse, 24 Chemin de Borde Rouge, B.p. 42 617 Auzeville, 31326 Castanet-Tolosan, France
| | - Yves Martinez
- CNRS, FR3450 Fédération de Recherches Agrobiosciences Interactions et Biodiversité, Plateforme TRI d’imagerie cellulaire de Toulouse, 24 Chemin de Borde Rouge, B.p. 42 617 Auzeville, 31326 Castanet-Tolosan, France
| | - Armelle Cabin-Flaman
- Equipe AMMIS, laboratoire MERCI EA 3829, UFR Science et Techniques, place Emile Blondel, 76821 Mont-Saint-Aignan cedex, France
| | - David Gibouin
- Equipe AMMIS, laboratoire MERCI EA 3829, UFR Science et Techniques, place Emile Blondel, 76821 Mont-Saint-Aignan cedex, France
| | - Jérôme Orivel
- CNRS, UMR Ecologie des Forêts de Guyane, AgroParisTech, CIRAD, INRA, Université de Guyane, Université des Antilles, Campus agronomique, BP 316, 97379 Kourou cedex, France and
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Lee L, Zhang Y, Ozar B, Sensen CW, Schriemer DC. Carnivorous Nutrition in Pitcher Plants (Nepenthes spp.) via an Unusual Complement of Endogenous Enzymes. J Proteome Res 2016; 15:3108-17. [PMID: 27436081 DOI: 10.1021/acs.jproteome.6b00224] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Plants belonging to the genus Nepenthes are carnivorous, using specialized pitfall traps called "pitchers" that attract, capture, and digest insects as a primary source of nutrients. We have used RNA sequencing to generate a cDNA library from the Nepenthes pitchers and applied it to mass spectrometry-based identification of the enzymes secreted into the pitcher fluid using a nonspecific digestion strategy superior to trypsin in this application. This first complete catalog of the pitcher fluid subproteome includes enzymes across a variety of functional classes. The most abundant proteins present in the secreted fluid are proteases, nucleases, peroxidases, chitinases, a phosphatase, and a glucanase. Nitrogen recovery involves a particularly rich complement of proteases. In addition to the two expected aspartic proteases, we discovered three novel nepenthensins, two prolyl endopeptidases that we name neprosins, and a putative serine carboxypeptidase. Additional proteins identified are relevant to pathogen-defense and secretion mechanisms. The full complement of acid-stable enzymes discovered in this study suggests that carnivory in the genus Nepenthes can be sustained by plant-based mechanisms alone and does not absolutely require bacterial symbiosis.
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Affiliation(s)
- Linda Lee
- Department of Biochemistry and Molecular Biology and the Southern Alberta Cancer Research Institute, University of Calgary , Calgary, Alberta T2N 4N1, Canada
| | - Ye Zhang
- Department of Biochemistry and Molecular Biology and the Southern Alberta Cancer Research Institute, University of Calgary , Calgary, Alberta T2N 4N1, Canada
| | - Brittany Ozar
- Department of Biochemistry and Molecular Biology and the Southern Alberta Cancer Research Institute, University of Calgary , Calgary, Alberta T2N 4N1, Canada
| | - Christoph W Sensen
- Institute of Molecular Biotechnology, Graz University of Technology , Graz 8010, Austria
| | - David C Schriemer
- Department of Biochemistry and Molecular Biology and the Southern Alberta Cancer Research Institute, University of Calgary , Calgary, Alberta T2N 4N1, Canada
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