1
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Carteron A, Cantera I, Guerrieri A, Marta S, Bonin A, Ambrosini R, Anthelme F, Azzoni RS, Almond P, Alviz Gazitúa P, Cauvy-Fraunié S, Ceballos Lievano JL, Chand P, Chand Sharma M, Clague JJ, Cochachín Rapre JA, Compostella C, Cruz Encarnación R, Dangles O, Eger A, Erokhin S, Franzetti A, Gielly L, Gili F, Gobbi M, Hågvar S, Khedim N, Meneses RI, Peyre G, Pittino F, Rabatel A, Urseitova N, Yang Y, Zaginaev V, Zerboni A, Zimmer A, Taberlet P, Diolaiuti GA, Poulenard J, Thuiller W, Caccianiga M, Ficetola GF. Dynamics and drivers of mycorrhizal fungi after glacier retreat. New Phytol 2024; 242:1739-1752. [PMID: 38581206 DOI: 10.1111/nph.19682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 12/17/2023] [Indexed: 04/08/2024]
Abstract
The development of terrestrial ecosystems depends greatly on plant mutualists such as mycorrhizal fungi. The global retreat of glaciers exposes nutrient-poor substrates in extreme environments and provides a unique opportunity to study early successions of mycorrhizal fungi by assessing their dynamics and drivers. We combined environmental DNA metabarcoding and measurements of local conditions to assess the succession of mycorrhizal communities during soil development in 46 glacier forelands around the globe, testing whether dynamics and drivers differ between mycorrhizal types. Mycorrhizal fungi colonized deglaciated areas very quickly (< 10 yr), with arbuscular mycorrhizal fungi tending to become more diverse through time compared to ectomycorrhizal fungi. Both alpha- and beta-diversity of arbuscular mycorrhizal fungi were significantly related to time since glacier retreat and plant communities, while microclimate and primary productivity were more important for ectomycorrhizal fungi. The richness and composition of mycorrhizal communities were also significantly explained by soil chemistry, highlighting the importance of microhabitat for community dynamics. The acceleration of ice melt and the modifications of microclimate forecasted by climate change scenarios are expected to impact the diversity of mycorrhizal partners. These changes could alter the interactions underlying biotic colonization and belowground-aboveground linkages, with multifaceted impacts on soil development and associated ecological processes.
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Affiliation(s)
- Alexis Carteron
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
- Université de Toulouse, Ecole d'Ingénieurs de PURPAN, UMR INRAE-INPT DYNAFOR, Toulouse, 31076, France
| | - Isabel Cantera
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
| | - Alessia Guerrieri
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
- Argaly, Bâtiment CleanSpace, 354 Voie Magellan, 73800, Sainte-Hélène-du-Lac, France
| | - Silvio Marta
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
- Institute of Geosciences and Earth Resources, CNR, Via Moruzzi 1, 56124, Pisa, Italy
| | - Aurélie Bonin
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
- Argaly, Bâtiment CleanSpace, 354 Voie Magellan, 73800, Sainte-Hélène-du-Lac, France
| | - Roberto Ambrosini
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
| | - Fabien Anthelme
- AMAP, Univ Montpellier, IRD, CIRAD, CNRS, INRAE, Montpellier, 34398, France
| | - Roberto Sergio Azzoni
- Dipartimento di Scienze della Terra 'Ardito Desio', Università degli Studi di Milano, Via L. Mangiagalli 34, 20133, Milano, Italy
| | - Peter Almond
- Department of Soil and Physical Sciences, Lincoln University, Lincoln, 7647, New Zealand
| | - Pablo Alviz Gazitúa
- Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos, CW76+76, Osorno, Chile
| | | | | | - Pritam Chand
- Department of Geography, School of Environment and Earth Sciences, Central University of Punjab, VPO-Ghudda, Bathinda, 151401, Punjab, India
| | - Milap Chand Sharma
- Centre for the Study of Regional Development - School of Social Sciences, Jawaharlal Nehru University, New Mehrauli Road, 110067, New Delhi, India
| | - John J Clague
- Department of Earth Sciences, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada
| | | | - Chiara Compostella
- Dipartimento di Scienze della Terra 'Ardito Desio', Università degli Studi di Milano, Via L. Mangiagalli 34, 20133, Milano, Italy
| | | | - Olivier Dangles
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, 34090, Montpellier, France
| | - Andre Eger
- Mannaki Whenua - Landcare Research, Soils and Landscapes, 54 Gerald St., Lincoln, 7608, New Zealand
| | - Sergey Erokhin
- Institute of Water Problems and Hydro-Energy, Kyrgyz National Academy of Sciences, Frunze, 533, 720033, Bishkek, Kyrgyzstan
| | - Andrea Franzetti
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, 20126, Milano, Italy
| | - Ludovic Gielly
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, F-38000, Grenoble, France
| | - Fabrizio Gili
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
- Department of Life Sciences and Systems Biology, University of Turin, Via Accademia Albertina 13, 10123, Turin, Italy
| | - Mauro Gobbi
- Research and Museum Collections Office, Climate and Ecology Unit, MUSE-Science Museum, Corso del Lavoro e della Scienza, 3, 38122, Trento, Italy
| | - Sigmund Hågvar
- Faculty of Environmental Sciences and Natural Resource Management (INA), Norwegian University of Life Sciences, Universitetstunet 3, 1433, Ås, Norway
- UiT - The Arctic University of Norway, Tromsø Museum, Tromsø, 9006, Norway
| | - Norine Khedim
- Université Savoie Mont Blanc, Université Grenoble Alpes, EDYTEM, F-73000, Chambéry, France
| | - Rosa Isela Meneses
- Herbario Nacional de Bolivia: La Paz, FW6J+RP2, La Paz, Bolivia
- Universidad Católica del Norte, 8HCR+94, Antofagasta, Chile
| | - Gwendolyn Peyre
- Department of Civil and Environmental Engineering, University of the Andes, 111711, Bogotá, Colombia
| | - Francesca Pittino
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, 20126, Milano, Italy
- Swiss Federal Institute for Forest, Snow and Landscape Research, Zürcherstrasse 111, 8903, Birmensdorf, Switzerland
| | - Antoine Rabatel
- Université Grenoble Alpes, CNRS, IRD, INRAE, Grenoble-INP, Institut des Géosciences de l'Environnement (IGE, UMR 5001), F-38000, Grenoble, France
| | - Nurai Urseitova
- Institute of Water Problems and Hydro-Energy, Kyrgyz National Academy of Sciences, Frunze, 533, 720033, Bishkek, Kyrgyzstan
| | - Yan Yang
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Vitalii Zaginaev
- Mountain Societies Research Institute, University of Central Asia, Toktogula 125/1, 720001, Bishkek, Kyrgyzstan
| | - Andrea Zerboni
- Dipartimento di Scienze della Terra 'Ardito Desio', Università degli Studi di Milano, Via L. Mangiagalli 34, 20133, Milano, Italy
| | - Anaïs Zimmer
- Department of Geography and the Environment, University of Texas at Austin, Austin, TX, 78712, USA
| | - Pierre Taberlet
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, F-38000, Grenoble, France
- UiT - The Arctic University of Norway, Tromsø Museum, Tromsø, 9006, Norway
| | - Guglielmina Adele Diolaiuti
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
| | - Jerome Poulenard
- Université Savoie Mont Blanc, Université Grenoble Alpes, EDYTEM, F-73000, Chambéry, France
| | - Wilfried Thuiller
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, F-38000, Grenoble, France
| | - Marco Caccianiga
- Dipartimento di Bioscienze, Universitá degli Studi di Milano, Via Celoria 26, 20133, Milano, Italy
| | - Gentile Francesco Ficetola
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Via Celoria 10, 20133, Milano, Italy
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, F-38000, Grenoble, France
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Ficetola GF, Guerrieri A, Cantera I, Bonin A. In silico assessment of 18S rDNA metabarcoding markers for the characterization of nematode communities. PLoS One 2024; 19:e0298905. [PMID: 38578734 PMCID: PMC10997105 DOI: 10.1371/journal.pone.0298905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 01/31/2024] [Indexed: 04/07/2024] Open
Abstract
Nematodes are keystone actors of soil, freshwater and marine ecosystems, but the complexity of morphological identification has limited broad-scale monitoring of nematode biodiversity. DNA metabarcoding is increasingly used to assess nematode diversity but requires universal primers with high taxonomic coverage and high taxonomic resolution. Several primers have been proposed for the metabarcoding of nematode diversity, many of which target the 18S rRNA gene. In silico analyses have a great potential to assess key parameters of primers, including taxonomic coverage, resolution and specificity. Based on a recently-available reference database, we tested in silico the performance of fourteen commonly used and one newly optimized primer for nematode metabarcoding. Most primers showed very good coverage, amplifying most of the sequences in the reference database, while four markers showed limited coverage. All primers showed good taxonomic resolution. Resolution was particularly good if the aim was the identification of higher-level taxa, such as genera or families. Overall, species-level resolution was higher for primers amplifying long fragments. None of the primers was highly specific for nematodes as, despite some variation, they all amplified a large number of other eukaryotes. Differences in performance across primers highlight the complexity of the choice of markers appropriate for the metabarcoding of nematodes, which depends on a trade-off between taxonomic resolution and the length of amplified fragments. Our in silico analyses provide new insights for the identification of the most appropriate primers, depending on the study goals and the origin of DNA samples. This represents an essential step to design and optimize metabarcoding studies assessing nematode diversity.
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Affiliation(s)
- Gentile Francesco Ficetola
- Department of Environmental Science and Policy, University of Milan, Milan, Italy
- LECA, Laboratoire d’Ecologie Alpine, Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, Grenoble, France
| | | | - Isabel Cantera
- Department of Environmental Science and Policy, University of Milan, Milan, Italy
| | - Aurelie Bonin
- Argaly, Bâtiment Cleanspace, Sainte-Hélène-du-Lac, France
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3
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Cantera I, Carteron A, Guerrieri A, Marta S, Bonin A, Ambrosini R, Anthelme F, Azzoni RS, Almond P, Alviz Gazitúa P, Cauvy-Fraunié S, Ceballos Lievano JL, Chand P, Chand Sharma M, Clague J, Cochachín Rapre JA, Compostella C, Cruz Encarnación R, Dangles O, Eger A, Erokhin S, Franzetti A, Gielly L, Gili F, Gobbi M, Hågvar S, Khedim N, Meneses RI, Peyre G, Pittino F, Rabatel A, Urseitova N, Yang Y, Zaginaev V, Zerboni A, Zimmer A, Taberlet P, Diolaiuti GA, Poulenard J, Thuiller W, Caccianiga M, Ficetola GF. The importance of species addition 'versus' replacement varies over succession in plant communities after glacier retreat. Nat Plants 2024; 10:256-267. [PMID: 38233559 DOI: 10.1038/s41477-023-01609-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 12/06/2023] [Indexed: 01/19/2024]
Abstract
The mechanisms underlying plant succession remain highly debated. Due to the local scope of most studies, we lack a global quantification of the relative importance of species addition 'versus' replacement. We assessed the role of these processes in the variation (β-diversity) of plant communities colonizing the forelands of 46 retreating glaciers worldwide, using both environmental DNA and traditional surveys. Our findings indicate that addition and replacement concur in determining community changes in deglaciated sites, but their relative importance varied over time. Taxa addition dominated immediately after glacier retreat, as expected in harsh environments, while replacement became more important for late-successional communities. These changes were aligned with total β-diversity changes, which were more pronounced between early-successional communities than between late-successional communities (>50 yr since glacier retreat). Despite the complexity of community assembly during plant succession, the observed global pattern suggests a generalized shift from the dominance of facilitation and/or stochastic processes in early-successional communities to a predominance of competition later on.
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Affiliation(s)
- Isabel Cantera
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy.
| | - Alexis Carteron
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Université de Toulouse, Ecole d'Ingénieurs de Purpan, UMR INRAE-INPT DYNAFOR, Toulouse, France
| | - Alessia Guerrieri
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Argaly, Bâtiment CleanSpace, Sainte-Hélène-du-Lac, France
| | - Silvio Marta
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Institute of Geosciences and Earth Resources, CNR, Pisa, Italy
| | - Aurélie Bonin
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Argaly, Bâtiment CleanSpace, Sainte-Hélène-du-Lac, France
| | - Roberto Ambrosini
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
| | - Fabien Anthelme
- Laboratory AMAP, IRD, University of Montpellier, CIRAD, CNRS, INRA, Montpellier, France
| | - Roberto Sergio Azzoni
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Dipartimento di Scienze della Terra 'Ardito Desio', Milano, Italy
| | - Peter Almond
- Department of Soil and Physical Sciences, Lincoln University, Lincoln, New Zealand
| | - Pablo Alviz Gazitúa
- Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos, Osorno, Chile
| | | | | | - Pritam Chand
- Department of Geography, School of Environment and Earth Sciences, Central University of Punjab, VPO- Ghudda, Bathinda, Punjab, India
| | - Milap Chand Sharma
- Centre for the Study of Regional Development - School of Social Sciences, Jawaharlal Nehru University, New Delhi, India
| | - John Clague
- Department of Earth Sciences, Simon Fraser University, Burnaby, British Columbia, Canada
| | | | | | | | - Olivier Dangles
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France
| | - Andre Eger
- Mannaki Whenua - Landcare Research, Soils and Landscapes, Lincoln, New Zealand
| | - Sergey Erokhin
- Institute of Water Problems and Hydro-Energy, Kyrgyz National Academy of Sciences, Bishkek, Kyrgyzstan
| | - Andrea Franzetti
- Department of Earth and Environmental Sciences (DISAT), - University of Milano-Bicocca, Milano, Italy
| | - Ludovic Gielly
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
| | - Fabrizio Gili
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - Mauro Gobbi
- Research and Museum Collections Office, Climate and Ecology Unit, MUSE-Science Museum, Trento, Italy
| | - Sigmund Hågvar
- Faculty of Environmental Sciences and Natural Resource Management (INA), Norwegian University of Life Sciences, Ås, Norway
- UiT - The Arctic University of Norway, Tromsø Museum, Tromsø, Norway
| | - Norine Khedim
- Univ. Savoie Mont Blanc, Univ. Grenoble Alpes, EDYTEM, Chambéry, France
| | - Rosa Isela Meneses
- Herbario Nacional de Bolivia: La Paz, La Paz, Bolivia
- Universidad Católica del Norte, Antofagasta, Chile
| | - Gwendolyn Peyre
- Department of Civil and Environmental Engineering, University of the Andes, Bogotá, Colombia
| | - Francesca Pittino
- Department of Earth and Environmental Sciences (DISAT), - University of Milano-Bicocca, Milano, Italy
| | - Antoine Rabatel
- Univ. Grenoble Alpes, CNRS, IRD, Grenoble-INP, Institut des Géosciences de l'Environnement (IGE, UMR 5001), Grenoble, France
| | - Nurai Urseitova
- Institute of Water Problems and Hydro-Energy, Kyrgyz National Academy of Sciences, Bishkek, Kyrgyzstan
| | - Yan Yang
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
| | - Vitalii Zaginaev
- Mountain Societies Research Institute, University of Central Asia, Bishkek, Kyrgyzstan
| | - Andrea Zerboni
- Dipartimento di Scienze della Terra 'Ardito Desio', Milano, Italy
| | - Anaïs Zimmer
- Department of Geography and the Environment, University of Texas at Austin, Austin, TX, USA
| | - Pierre Taberlet
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
- UiT - The Arctic University of Norway, Tromsø Museum, Tromsø, Norway
| | | | - Jerome Poulenard
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France
| | - Wilfried Thuiller
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
| | - Marco Caccianiga
- Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy
| | - Gentile Francesco Ficetola
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
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4
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Guerrieri A, Cantera I, Marta S, Bonin A, Carteron A, Ambrosini R, Caccianiga M, Anthelme F, Azzoni RS, Almond P, Alviz Gazitúa P, Cauvy-Fraunié S, Ceballos Lievano JL, Chand P, Chand Sharma M, Clague J, Cochachín Rapre JA, Compostella C, Cruz Encarnación R, Dangles O, Deline P, Eger A, Erokhin S, Franzetti A, Gielly L, Gili F, Gobbi M, Hågvar S, Khedim N, Meneses RI, Peyre G, Pittino F, Proietto A, Rabatel A, Urseitova N, Yang Y, Zaginaev V, Zerboni A, Zimmer A, Taberlet P, Diolaiuti GA, Poulenard J, Fontaneto D, Thuiller W, Ficetola GF. Local climate modulates the development of soil nematode communities after glacier retreat. Glob Chang Biol 2024; 30:e17057. [PMID: 38273541 DOI: 10.1111/gcb.17057] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Accepted: 10/10/2023] [Indexed: 01/27/2024]
Abstract
The worldwide retreat of glaciers is causing a faster than ever increase in ice-free areas that are leading to the emergence of new ecosystems. Understanding the dynamics of these environments is critical to predicting the consequences of climate change on mountains and at high latitudes. Climatic differences between regions of the world could modulate the emergence of biodiversity and functionality after glacier retreat, yet global tests of this hypothesis are lacking. Nematodes are the most abundant soil animals, with keystone roles in ecosystem functioning, but the lack of global-scale studies limits our understanding of how the taxonomic and functional diversity of nematodes changes during the colonization of proglacial landscapes. We used environmental DNA metabarcoding to characterize nematode communities of 48 glacier forelands from five continents. We assessed how different facets of biodiversity change with the age of deglaciated terrains and tested the hypothesis that colonization patterns are different across forelands with different climatic conditions. Nematodes colonized ice-free areas almost immediately. Both taxonomic and functional richness quickly increased over time, but the increase in nematode diversity was modulated by climate, so that colonization started earlier in forelands with mild summer temperatures. Colder forelands initially hosted poor communities, but the colonization rate then accelerated, eventually leveling biodiversity differences between climatic regimes in the long term. Immediately after glacier retreat, communities were dominated by colonizer taxa with short generation time and r-ecological strategy but community composition shifted through time, with increased frequency of more persister taxa with K-ecological strategy. These changes mostly occurred through the addition of new traits instead of their replacement during succession. The effects of local climate on nematode colonization led to heterogeneous but predictable patterns around the world that likely affect soil communities and overall ecosystem development.
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Affiliation(s)
- Alessia Guerrieri
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Argaly, Bâtiment CleanSpace, Sainte-Hélène-du-Lac, France
| | - Isabel Cantera
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
| | - Silvio Marta
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Institute of Geosciences and Earth Resources, CNR, Pisa, Italy
| | - Aurélie Bonin
- Argaly, Bâtiment CleanSpace, Sainte-Hélène-du-Lac, France
| | - Alexis Carteron
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
| | - Roberto Ambrosini
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
| | - Marco Caccianiga
- Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy
| | - Fabien Anthelme
- Laboratory AMAP, IRD, University of Montpellier, CIRAD, CNRS, INRA, Montpellier, France
| | - Roberto Sergio Azzoni
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Dipartimento di Scienze della Terra "Ardito Desio", Università degli Studi di Milano, Milano, Italy
| | - Peter Almond
- Department of Soil and Physical Sciences, Lincoln University, Lincoln, New Zealand
| | - Pablo Alviz Gazitúa
- Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos, Osorno, Chile
| | | | | | - Pritam Chand
- Department of Geography, School of Environment and Earth Sciences, Central University of Punjab, Bathinda, Punjab, India
| | - Milap Chand Sharma
- Centre for the Study of Regional Development - School of Social Sciences, Jawaharlal Nehru University, New Delhi, India
| | - John Clague
- Department of Earth Sciences, Simon Fraser University, Burnaby, British Columbia, Canada
| | | | - Chiara Compostella
- Dipartimento di Scienze della Terra "Ardito Desio", Università degli Studi di Milano, Milano, Italy
| | | | - Olivier Dangles
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Univ Paul Valéry Montpellier 3, Montpellier, France
| | - Philip Deline
- Univ. Savoie Mont Blanc, Univ. Grenoble Alpes, EDYTEM, Chambéry, France
| | - Andre Eger
- Mannaki Whenua - Landcare Research, Soils and Landscapes, Lincoln, New Zealand
| | - Sergey Erokhin
- Institute of Water Problems and Hydro-Energy, Kyrgyz National Academy of Sciences, Bishkek, Kyrgyzstan
| | - Andrea Franzetti
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Milano, Italy
| | - Ludovic Gielly
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
| | - Fabrizio Gili
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy
| | - Mauro Gobbi
- Research and Museum Collections Office, Climate and Ecology Unit, MUSE-Science Museum, Corso del Lavoro e della Scienza, Trento, Italy
| | - Sigmund Hågvar
- Faculty of Environmental Sciences and Natural Resource Management (INA), Norwegian University of Life Sciences, Ås, Norway
- UiT - The Arctic University of Norway, Tromsø Museum, Tromsø, Norway
| | - Norine Khedim
- Univ. Savoie Mont Blanc, Univ. Grenoble Alpes, EDYTEM, Chambéry, France
| | - Rosa Isela Meneses
- Herbario Nacional de Bolivia: La Paz, La Paz, Bolivia
- Universidad Católica del Norte, Antofagasta, Chile
| | - Gwendolyn Peyre
- Department of Civil and Environmental Engineering, University of the Andes, Bogotá, Colombia
| | - Francesca Pittino
- Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Milano, Italy
| | - Angela Proietto
- Dipartimento di Scienze della Terra "Ardito Desio", Università degli Studi di Milano, Milano, Italy
| | - Antoine Rabatel
- Univ. Grenoble Alpes, CNRS, IRD, Grenoble-INP, Institut des Géosciences de l'Environnement (IGE, UMR 5001), Grenoble, France
| | - Nurai Urseitova
- Institute of Water Problems and Hydro-Energy, Kyrgyz National Academy of Sciences, Bishkek, Kyrgyzstan
| | - Yan Yang
- Institute of Mountain Hazards and Environment, Chinese Academy of Sciences, Chengdu, China
| | - Vitalii Zaginaev
- Mountain Societies Research Institute, University of Central Asia, Bishkek, Kyrgyzstan
| | - Andrea Zerboni
- Dipartimento di Scienze della Terra "Ardito Desio", Università degli Studi di Milano, Milano, Italy
| | - Anaïs Zimmer
- Department of Geography and the Environment, University of Texas at Austin, Austin, Texas, USA
| | - Pierre Taberlet
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
- UiT - The Arctic University of Norway, Tromsø Museum, Tromsø, Norway
| | | | - Jerome Poulenard
- Univ. Savoie Mont Blanc, Univ. Grenoble Alpes, EDYTEM, Chambéry, France
| | - Diego Fontaneto
- CNR - Water Research Institute, Verbania, Italy
- NBFC - National Biodiversity Future Center, Palermo, Italy
| | - Wilfried Thuiller
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
| | - Gentile Francesco Ficetola
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
- Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LECA, Grenoble, France
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5
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Guerrieri A, Carteron A, Bonin A, Marta S, Ambrosini R, Caccianiga M, Cantera I, Compostella C, Diolaiuti G, Fontaneto D, Gielly L, Gili F, Gobbi M, Poulenard J, Taberlet P, Zerboni A, Thuiller W, Ficetola GF. Metabarcoding data reveal vertical multitaxa variation in topsoil communities during the colonization of deglaciated forelands. Mol Ecol 2023; 32:6304-6319. [PMID: 35997629 DOI: 10.1111/mec.16669] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 07/21/2022] [Accepted: 08/15/2022] [Indexed: 11/27/2022]
Abstract
Ice-free areas are expanding worldwide due to dramatic glacier shrinkage and are undergoing rapid colonization by multiple lifeforms, thus representing key environments to study ecosystem development. It has been proposed that the colonization dynamics of deglaciated terrains is different between surface and deep soils but that the heterogeneity between communities inhabiting surface and deep soils decreases through time. Nevertheless, tests of this hypothesis remain scarce, and it is unclear whether patterns are consistent among different taxonomic groups. Here, we used environmental DNA metabarcoding to test whether community diversity and composition of six groups (Eukaryota, Bacteria, Mycota, Collembola, Insecta, and Oligochaeta) differ between the surface (0-5 cm) and deeper (7.5-20 cm) soil at different stages of development and across five Alpine glaciers. Taxonomic diversity increased with time since glacier retreat and with soil evolution. The pattern was consistent across groups and soil depths. For Eukaryota and Mycota, alpha-diversity was highest at the surface. Time since glacier retreat explained more variation of community composition than depth. Beta-diversity between surface and deep layers decreased with time since glacier retreat, supporting the hypothesis that the first 20 cm of soil tends to homogenize through time. Several molecular operational taxonomic units of bacteria and fungi were significant indicators of specific depths and/or soil development stages, confirming the strong functional variation of microbial communities through time and depth. The complexity of community patterns highlights the importance of integrating information from multiple taxonomic groups to unravel community variation in response to ongoing global changes.
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Affiliation(s)
- Alessia Guerrieri
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | - Alexis Carteron
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | - Aurélie Bonin
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
- Argaly, Bâtiment CleanSpace, Sainte-Hélène-du-Lac, France
| | - Silvio Marta
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | - Roberto Ambrosini
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | - Marco Caccianiga
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | - Isabel Cantera
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | - Chiara Compostella
- Department of Earth Sciences, "A. Desio," Università degli Studi di Milano, Milan, Italy
| | - Guglielmina Diolaiuti
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | | | - Ludovic Gielly
- Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Laboratoire d'Ecologie Alpine, Grenoble, France
| | - Fabrizio Gili
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
| | - Mauro Gobbi
- Research & Museum Collections Office, Climate and Ecology Unit, MUSE-Science Museum, Trento, Italy
| | | | - Pierre Taberlet
- Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Laboratoire d'Ecologie Alpine, Grenoble, France
- UiT - The Arctic University of Norway, Tromsø Museum, Tromsø, Norway
| | - Andrea Zerboni
- Department of Earth Sciences, "A. Desio," Università degli Studi di Milano, Milan, Italy
| | - Wilfried Thuiller
- Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Laboratoire d'Ecologie Alpine, Grenoble, France
| | - Gentile Francesco Ficetola
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milan, Italy
- Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Laboratoire d'Ecologie Alpine, Grenoble, France
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6
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Bassi I, Guerrieri A, Carpano M, Gardini A, Prediletto I, Polastri M, Curtis JR, Nava S. Feasibility and efficacy of a multidisciplinary palliative approach in patients with advanced interstitial lung disease. A pilot randomised controlled trial. Pulmonology 2023; 29 Suppl 4:S54-S62. [PMID: 34969647 DOI: 10.1016/j.pulmoe.2021.11.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Revised: 11/16/2021] [Accepted: 11/16/2021] [Indexed: 10/19/2022] Open
Abstract
INTRODUCTION AND OBJECTIVES Interstitial lung diseases (ILDs) encompass a heterogeneous group of parenchymal lung disorders which have a significant burden on quality of life and exercise. The primary purpose of this randomised pilot trial performed in advanced ILD was to determine the feasibility and efficacy of a multidisciplinary palliative care approach (including physiotherapist, psychologist, pulmonologists, and palliative care doctors) to relieve patients' symptoms of dyspnoea, depression measured with the Center for Epidemiological Studies-Depression (CES-D) scale and quality-of-life (QoL) at 6 and 12 months. MATHERIALS AND METHODS Fifty patients with confirmed interstitial lung disease at computed tomography (CT) scan and advanced disease were enrolled at our clinic. Patients were randomised to usual care group vs intervention group; in the intervention group, patients were scheduled to meet a physiotherapist, a psychologist, a palliative care doctor, and a pulmonologist specialized in ILD care. Data on dyspnoea, cough, quality of life and depression were recorded; patients in the intervention group were also tested to assess lower body flexibility and strength. RESULTS Both groups showed a worsening in dyspnoea during the time course of the trial, but the Borg scale was less in the intervention group at 6 and 12 months. A similar trend was observed also for the CES-D scale. No differences were observed for the other scales. CONCLUSIONS A multi-disciplinary palliative care intervention in patients with advanced fibrosing interstitial lung disease is feasible and effective. TRIAL REGISTRATION NCT02929966 on ClinGovTrial.
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Affiliation(s)
- I Bassi
- Department of Clinical, Integrated and Experimental Medicine (DIMES), Alma Mater University, Bologna, 40138, Italy; Respiratory and Critical Care Unit, IRCCS Azienda Ospedaliero-Universitaria di Bologna, 40138, Italy
| | - A Guerrieri
- Department of Clinical, Integrated and Experimental Medicine (DIMES), Alma Mater University, Bologna, 40138, Italy; Respiratory and Critical Care Unit, IRCCS Azienda Ospedaliero-Universitaria di Bologna, 40138, Italy
| | - M Carpano
- Department of Clinical, Integrated and Experimental Medicine (DIMES), Alma Mater University, Bologna, 40138, Italy; Respiratory and Critical Care Unit, IRCCS Azienda Ospedaliero-Universitaria di Bologna, 40138, Italy
| | - A Gardini
- Department of Statistical Sciences "P. Fortunati", Alma Mater University, Bologna, 40138, Italy
| | - I Prediletto
- Department of Clinical, Integrated and Experimental Medicine (DIMES), Alma Mater University, Bologna, 40138, Italy; Respiratory and Critical Care Unit, IRCCS Azienda Ospedaliero-Universitaria di Bologna, 40138, Italy
| | - M Polastri
- Department of Continuity of Care and Disability, Physical Medicine and Rehabilitation, IRCCS Azienda Ospedaliero-Universitaria di Bologna, 40138, Italy
| | - J Randall Curtis
- Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of Washington, Seattle WA, 98195, United States; Cambia Palliative Care Center of Excellence, UW Medicine, University of Washington, Seattle WA, 98195, United States
| | - S Nava
- Department of Clinical, Integrated and Experimental Medicine (DIMES), Alma Mater University, Bologna, 40138, Italy; Respiratory and Critical Care Unit, IRCCS Azienda Ospedaliero-Universitaria di Bologna, 40138, Italy.
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7
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Bonin A, Guerrieri A, Ficetola GF. Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies. Mol Ecol Resour 2023; 23:368-381. [PMID: 36052659 DOI: 10.1111/1755-0998.13709] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2021] [Revised: 08/08/2022] [Accepted: 08/25/2022] [Indexed: 01/04/2023]
Abstract
Clustering approaches are pivotal to handle the many sequence variants obtained in DNA metabarcoding data sets, and therefore they have become a key step of metabarcoding analysis pipelines. Clustering often relies on a sequence similarity threshold to gather sequences into molecular operational taxonomic units (MOTUs), each of which ideally represents a homogeneous taxonomic entity (e.g., a species or a genus). However, the choice of the clustering threshold is rarely justified, and its impact on MOTU over-splitting or over-merging even less tested. Here, we evaluated clustering threshold values for several metabarcoding markers under different criteria: limitation of MOTU over-merging, limitation of MOTU over-splitting, and trade-off between over-merging and over-splitting. We extracted sequences from a public database for nine markers, ranging from generalist markers targeting Bacteria or Eukaryota, to more specific markers targeting a class or a subclass (e.g., Insecta, Oligochaeta). Based on the distributions of pairwise sequence similarities within species and within genera, and on the rates of over-splitting and over-merging across different clustering thresholds, we were able to propose threshold values minimizing the risk of over-splitting, that of over-merging, or offering a trade-off between the two risks. For generalist markers, high similarity thresholds (0.96-0.99) are generally appropriate, while more specific markers require lower values (0.85-0.96). These results do not support the use of a fixed clustering threshold. Instead, we advocate careful examination of the most appropriate threshold based on the research objectives, the potential costs of over-splitting and over-merging, and the features of the studied markers.
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Affiliation(s)
- Aurélie Bonin
- Department of Environmental Science and Policy, University of Milan, Milan, Italy.,Argaly, Bâtiment Clean space, Sainte-Hélène-du-Lac, France
| | - Alessia Guerrieri
- Department of Environmental Science and Policy, University of Milan, Milan, Italy
| | - Gentile Francesco Ficetola
- Department of Environmental Science and Policy, University of Milan, Milan, Italy.,LECA, Laboratoire d'Ecologie Alpine, Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, Grenoble, France
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8
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Lunghi E, Valle B, Guerrieri A, Bonin A, Cianferoni F, Manenti R, Ficetola GF. Environmental DNA of insects and springtails from caves reveals complex processes of eDNA transfer in soils. Sci Total Environ 2022; 826:154022. [PMID: 35202680 DOI: 10.1016/j.scitotenv.2022.154022] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Revised: 02/01/2022] [Accepted: 02/15/2022] [Indexed: 06/14/2023]
Abstract
Subterranean environments host a substantial amount of biodiversity, however assessing the distribution of species living underground is still extremely challenging. Environmental DNA (eDNA) metabarcoding is a powerful tool to estimate biodiversity in poorly known environments and has excellent performance for soil organisms. Here, we tested 1) whether eDNA metabarcoding from cave soils/sediments allows to successfully detect springtails (Hexapoda: Collembola) and insects (Hexapoda: Insecta); 2) whether eDNA mostly represents autochthonous (cave-dwelling) organisms or it also incorporates information from species living in surface environments; 3) whether eDNA detection probability changes across taxa with different ecology. Environmental DNA metabarcoding analyses detected a large number of Molecular Operational Taxonomic Units (MOTUs) for both insects and springtails. For springtails, detection probability was high, with a substantial proportion of hypogean species, suggesting that eDNA provides good information on the distribution of these organisms in caves. Conversely, for insects most of MOTUs represented taxa living outside caves, and the majority of them represented taxa/organisms living in freshwater environments (Ephemeroptera, Plecoptera and Trichoptera). The eDNA of freshwater insects was particularly abundant in deep sectors of caves, far from the entrance. Furthermore, average detection probability of insects was significantly lower than the one of springtails. This suggests that cave soils/sediments act as "conveyer belts of biodiversity information", possibly because percolating water lead to the accumulation of eDNA of organisms living in nearby areas. Cave soils hold a complex mix of autochthonous and allochthonous eDNA. eDNA provided unprecedented information on the understudied subterranean cave organisms; analyses of detection probability and occupancy can help teasing apart local eDNA from the eDNA representing spatially-integrated biodiversity for whole landscape.
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Affiliation(s)
- Enrico Lunghi
- Division of Molecular Biology Ruđer Bošković Institute, Zagreb, Croatia; Natural Oasis, Prato, Italy.
| | - Barbara Valle
- Dipartimento di Bioscienze, Università degli Studi di Milano, Milano, Italy; Unità di Climatologia ed Ecologia, MUSE-Museo delle Scienze di Trento, Italy
| | - Alessia Guerrieri
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
| | - Aurélie Bonin
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy
| | - Fabio Cianferoni
- Istituto di Ricerca sugli Ecosistemi Terrestri (IRET), Consiglio Nazionale delle Ricerche (CNR), Sesto Fiorentino (Firenze), Italy; Zoologia, La Specola, Museo di Storia Naturale, Università degli Studi di Firenze, Firenze, Italy
| | - Raoul Manenti
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy; Laboratorio di Biologia Sotterranea "Enrico Pezzoli", Parco Regionale del Monte Barro, Galbiate, Italy
| | - Gentile Francesco Ficetola
- Dipartimento di Scienze e Politiche Ambientali, Università degli Studi di Milano, Milano, Italy; Laboratoire d'Écologie Alpine (LECA), Université Grenoble Alpes, CNRS, Grenoble, France
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9
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Ficetola GF, Marta S, Guerrieri A, Gobbi M, Ambrosini R, Fontaneto D, Zerboni A, Poulenard J, Caccianiga M, Thuiller W. Dynamics of Ecological Communities Following Current Retreat of Glaciers. Annu Rev Ecol Evol Syst 2021. [DOI: 10.1146/annurev-ecolsys-010521-040017] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Glaciers are retreating globally, and the resulting ice-free areas provide an experimental system for understanding species colonization patterns, community formation, and dynamics. The last several years have seen crucial advances in our understanding of biotic colonization after glacier retreats, resulting from the integration of methodological innovations and ecological theories. Recent empirical studies have demonstrated how multiple factors can speed up or slow down the velocity of colonization and have helped scientists develop theoretical models that describe spatiotemporalchanges in community structure. There is a growing awareness of how different processes (e.g., time since glacier retreat, onset or interruption of surface processes, abiotic factors, dispersal, biotic interactions) interact to shape community formation and, ultimately, their functional structure through succession. Here, we examine how these studies address key theoretical questions about community dynamics and show how classical approaches are increasingly being combined with environmental DNA metabarcoding and functional trait analysis to document the formation of multitrophic communities, revolutionizing our understanding of the biotic processes that occur following glacier retreat.
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Affiliation(s)
- Gentile Francesco Ficetola
- Department of Environmental Science and Policy, Università degli Studi di Milano, I-20133 Milano, Italy
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, Laboratoire d'Ecologie Alpine, F-38000, Grenoble, France
| | - Silvio Marta
- Department of Environmental Science and Policy, Università degli Studi di Milano, I-20133 Milano, Italy
| | - Alessia Guerrieri
- Department of Environmental Science and Policy, Università degli Studi di Milano, I-20133 Milano, Italy
| | - Mauro Gobbi
- Section of Invertebrate Zoology and Hydrobiology, MUSE-Science Museum, I-38122 Trento, Italy
| | - Roberto Ambrosini
- Department of Environmental Science and Policy, Università degli Studi di Milano, I-20133 Milano, Italy
| | - Diego Fontaneto
- Molecular Ecology Group, Water Research Institute (IRSA), Italian National Research Council (CNR), I-28922 Verbania Pallanza, Italy
| | - Andrea Zerboni
- Dipartimento di Scienze della Terra “A. Desio,” Università degli Studi di Milano, I-20133 Milano, Italy
| | - Jerome Poulenard
- Laboratory of Environments, Dynamics, and Mountain Territories (EDYTEM), Université Savoie Mont Blanc, Université Grenoble Alpes, CNRS, F‐73000 Chambéry, France
| | - Marco Caccianiga
- Department of Biosciences, Università degli Studi di Milano, I-20133 Milano, Italy
| | - Wilfried Thuiller
- Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, Laboratoire d'Ecologie Alpine, F-38000, Grenoble, France
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10
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Contursi M, Coviello D, Ciriello R, Guerrieri A, Palmieri MA, Langerame F, Bianco G, Salvi AM. Surface and Electrochemical Characterization of a New Layered GC/Betaine/Pt Electrode and Investigation on its Performance as a Sensor for two B Complex Vitamins, B1 and B6: Preliminary Results. ELECTROANAL 2021. [DOI: 10.1002/elan.202060226] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- M. Contursi
- University of Basilicata Science Department Potenza Italy
| | - D. Coviello
- University of Basilicata Science Department Potenza Italy
| | - R. Ciriello
- University of Basilicata Science Department Potenza Italy
| | - A. Guerrieri
- University of Basilicata Science Department Potenza Italy
| | - M. A. Palmieri
- University of Basilicata Science Department Potenza Italy
| | - F. Langerame
- University of Basilicata Science Department Potenza Italy
| | - G. Bianco
- University of Basilicata Science Department Potenza Italy
| | - A. M. Salvi
- University of Basilicata Science Department Potenza Italy
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11
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Guerrieri A, Bonin A, Münkemüller T, Gielly L, Thuiller W, Francesco Ficetola G. Effects of soil preservation for biodiversity monitoring using environmental DNA. Mol Ecol 2020; 30:3313-3325. [PMID: 33034070 DOI: 10.1111/mec.15674] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 09/10/2020] [Accepted: 09/23/2020] [Indexed: 12/13/2022]
Abstract
Environmental DNA (eDNA) metabarcoding is becoming a key tool for biodiversity monitoring over large geographical or taxonomic scales and for elusive taxa such as soil organisms. Increasing sample sizes and interest in remote or extreme areas often require the preservation of soil samples and thus deviations from optimal standardized protocols. However, we still ignore the impact of different methods of soil sample preservation on the results of metabarcoding studies and there is no guideline for best practices so far. Here, we assessed the impact of four methods of soil sample preservation that can be conveniently used also in metabarcoding studies targeting remote or difficult to access areas. Tested methods include: preservation at room temperature for 6 hr, preservation at 4°C for 3 days, desiccation immediately after sampling and preservation for 21 days, and desiccation after 6 hr at room temperature and preservation for 21 days. For each preservation method, we benchmarked resulting estimates of taxon diversity and community composition of three different taxonomic groups (bacteria, fungi and eukaryotes) in three different habitats (forest, river bank and grassland) against results obtained under ideal conditions (i.e., extraction of eDNA immediately after sampling). Overall, the different preservation methods only marginally impaired results and only under certain conditions. When rare taxa were considered, we detected small but significant changes in molecular operational taxonomic units (MOTU) richness of bacteria, fungi and eukaryotes across treatments, but MOTU richness was similar across preservation methods if rare taxa were not considered. All the approaches were able to identify differences in community structure among habitats, and the communities retrieved using the different preservation conditions were extremely similar. We propose guidelines on the selection of the optimal soil sample preservation conditions for metabarcoding studies, depending on the practical constraints, costs and ultimate research goals.
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Affiliation(s)
- Alessia Guerrieri
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milano, Italy
| | - Aurélie Bonin
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milano, Italy
| | - Tamara Münkemüller
- Laboratoire d'Ecologie Alpine, Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Grenoble, France
| | - Ludovic Gielly
- Laboratoire d'Ecologie Alpine, Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Grenoble, France
| | - Wilfried Thuiller
- Laboratoire d'Ecologie Alpine, Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Grenoble, France
| | - Gentile Francesco Ficetola
- Department of Environmental Science and Policy, Università degli Studi di Milano, Milano, Italy.,Laboratoire d'Ecologie Alpine, Univ. Grenoble Alpes, CNRS, Univ. Savoie Mont Blanc, LECA, Grenoble, France
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12
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Furmenti MF, Bert F, Rucci M, Fiandra U, Scarmozzino A, Guerrieri A, Ripa F, Siliquini R. Risk Management in nursing homes: an Italian experience in 2019. Eur J Public Health 2020. [DOI: 10.1093/eurpub/ckaa166.1172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
The ageing of the European population leads to an increasing demand for Long-Term Care services. The security and well-being of the elderly population hosted in nursing homes (NHs) needs an effective Risk Management policy, officially sanctioned in Italy by the so-called “Legge Gelli” n.24 (March 8th, 2017) and the Directive 2011/24/EU on the application of patients' rights in cross-border healthcare. In order to verify the effective application of common “best practices” in terms of Risk Management in NHs, a tool useful to analyse risk management attitudes in Northern Italy was conceived and applied in a sample of NHs.
Methods
The tool, developed in collaboration with the health insurance company SHAM Italia, is composed of 124 items (with a dichotomous answer -YES/NO) on topics related to various Risk Management practices. This tool was submitted in a face-to-face interview to several Directors (Health Directors or Nursing Coordinators) of NHs in the Piedmont Region. A list of randomly-chosen NHs was contacted: 4 of them were selected for the pilot study and compiled the questionnaire. Answers were gathered and analyzed through Microsoft Excel.
Results
Only the 25% of NHs has a Risk Management plan with objectives and indicators of effectiveness and uses Risk Analysis instruments for a pre- and post-” risk detection. Only one has employees working mainly on Risk Management alone. The 75% of the reported events were “Adverse Events”, and all the NHs (100%) have a protocol for a patient voluntary departure or for fall prevention or for bedsores prevention; while 50% have a protocol for prevention of aggressions towards operators or for patients' suicide prevention.
Conclusions
This work provides a starting point to face new challenges that are looming on the European Health-care Systems: the care for the elderlies needs to be perfected to reduce inefficiencies, cut useless costs and improve safety of patients in the NHs setting.
Key messages
Despite safety of older patients in nursing homes is not only important but mandatory in Italy, risk management tools for this setting are lacking in literature. A new tool applied in Italian nursing homes showed that risk management needs to be implemented in practice and these results can be extended to European context.
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Affiliation(s)
- M F Furmenti
- Department of Public Health Sciences, University of Turin, Department of Public Health, Turin, Italy
- Department of Healthcare's Quality and Safety, A.O.U. City of Health and Science of Turin, Turin, Italy
| | - F Bert
- Department of Public Health Sciences, University of Turin, Department of Public Health, Turin, Italy
- Department of Healthcare's Quality and Safety, A.O.U. City of Health and Science of Turin, Turin, Italy
| | - M Rucci
- Department of Public Health Sciences, University of Turin, Department of Public Health, Turin, Italy
| | - U Fiandra
- Department of Healthcare's Quality and Safety, A.O.U. City of Health and Science of Turin, Turin, Italy
| | - A Scarmozzino
- Department of Healthcare's Quality and Safety, A.O.U. City of Health and Science of Turin, Turin, Italy
| | | | - F Ripa
- Assessorato alla Sanità, Regione Piemonte, Turin, Italy
| | - R Siliquini
- Department of Public Health Sciences, University of Turin, Department of Public Health, Turin, Italy
- Department of Healthcare's Quality and Safety, A.O.U. City of Health and Science of Turin, Turin, Italy
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13
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Ciriello R, Carbone M, Coviello D, Guerrieri A, Salvi A. Improved stability of thin insulating poly(o-aminophenol) films in aqueous solutions through an efficient strategy for electrosynthesis under neutral pH conditions: Electrochemical and XPS investigation. J Electroanal Chem (Lausanne) 2020. [DOI: 10.1016/j.jelechem.2020.114183] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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14
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Anjos RM, Amaral SSG, Muniz MC, Cardoso RP, Bernardo TAS, Guerrieri A, Lage LL. Using infrared spectroscopy analysis of plastic debris to introduce concepts of interaction of electromagnetic radiation with matter. ACTA ACUST UNITED AC 2020. [DOI: 10.1088/1361-6552/ab630b] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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15
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Bonomo M, Cafaro C, Guerrieri A, Crispo F, Milella L, Calabrone L, Salzano G. Flow cytometry and capillary electrophoresis analyses in ethanol-stressedOenococcus oenistrains and changes assessment of membrane fatty acid composition. J Appl Microbiol 2017; 122:1615-1626. [DOI: 10.1111/jam.13466] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2016] [Revised: 02/11/2017] [Accepted: 03/21/2017] [Indexed: 12/01/2022]
Affiliation(s)
- M.G. Bonomo
- Dipartimento di Scienze; Università degli Studi della Basilicata; Potenza Italy
| | - C. Cafaro
- Dipartimento di Scienze; Università degli Studi della Basilicata; Potenza Italy
| | - A. Guerrieri
- Dipartimento di Scienze; Università degli Studi della Basilicata; Potenza Italy
| | - F. Crispo
- Dipartimento di Scienze; Università degli Studi della Basilicata; Potenza Italy
| | - L. Milella
- Dipartimento di Scienze; Università degli Studi della Basilicata; Potenza Italy
| | - L. Calabrone
- Dipartimento di Scienze; Università degli Studi della Basilicata; Potenza Italy
| | - G. Salzano
- Dipartimento di Scienze; Università degli Studi della Basilicata; Potenza Italy
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Guerrieri A, Gaucher C, Bonte E, Lasfargues JJ. Minimal intervention dentistry: part 4. Detection and diagnosis of initial caries lesions. Br Dent J 2012; 213:551-7. [DOI: 10.1038/sj.bdj.2012.1087] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/21/2012] [Indexed: 11/09/2022]
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Guerrieri A, Lattanzio V, Palmisano F, Zambonin PG. Electrosynthesized poly(pyrrole)/poly(2-naphthol) bilayer membrane as an effective anti-interference layer for simultaneous determination of acethylcholine and choline by a dual electrode amperometric biosensor. Biosens Bioelectron 2005; 21:1710-8. [PMID: 16169212 DOI: 10.1016/j.bios.2005.08.005] [Citation(s) in RCA: 61] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2005] [Revised: 08/13/2005] [Accepted: 08/15/2005] [Indexed: 11/20/2022]
Abstract
Several neural diseases appear related to the neurotransmitter acethylcholine (ACh) and its metabolite choline (Ch) brain levels so that their simultaneous determination is essential. A cross-talk and interference free dual electrode amperometric biosensor for the simultaneous determination of both analytes has been developed. Acetylcholinesterase (AChE) and choline oxidase (ChO) were immobilized by glutaraldehyde co-crosslinking with bovine serum albumin. A very efficient rejection of electroactive interferents has been achieved by a novel electrosynthesized polymeric bilayer membrane composed by overoxidised poly(pyrrole) and poly(2-naphthol) films. Sensitivities towards several electroactive interferents ranged from ca. 0.04% (e.g. ascorbate) to ca. 0.3% (e.g. dopamine) of those relevant to ACh and Ch (11 and 15 microA/microM, respectively). Detection limits (at S/N=3) in flow injection analysis were ca. 100 nM for both ACh and Ch at the ChO-AChE electrode and ca. 40 nM for Ch at the ChO sensor. Biosensor performances appear more than adequate for brain tissue homogenates and cerebrospinal fluids analysis where average levels in the low micromolar range are typically found.
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Affiliation(s)
- A Guerrieri
- Dipartimento di Chimica, Università degli Studi della Basilicata, Via N. Sauro, 85-85100 Potenza, Italy.
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Palmisano F, Guerrieri A, Quinto M, Zambonin PG. Electrosynthesized Bilayer Polymeric Membrane for Effective Elimination of Electroactive Interferents in Amperometric Biosensors. Anal Chem 2002. [DOI: 10.1021/ac00101a032] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Guerrieri A, Monaci L, Quinto M, Palmisano F. A disposable amperometric biosensor for rapid screening of anticholinesterase activity in soil extracts. Analyst 2002; 127:5-7. [PMID: 11827395 DOI: 10.1039/b109123a] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A disposable amperometric biosensor for the determination of anticholinesterase activity in soil extracts is described. The sensitive membrane was obtained by co-crosslinking acetylcholinesterase and choline oxidase with bovine serum albumin using glutaraldehyde. The anticholinesterase activity of the soil extract was measured using chronoamperometry at 650 mV vs. Ag/AgCl to monitor the biocatalytically produced H2O2 before and after the inhibition step. An inhibition percentage of 38 +/- 4% was recorded for soil extracts spiked with 10 ppb of ethyl parathion. The device has the potential to be used as a gross sensor for the assessment of anticholinesterase activity in soil extracts.
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Affiliation(s)
- A Guerrieri
- Dipartimento di Chimica, Università degli Studi della Basilicata, Potenza, Italy
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20
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Guerrieri A, Palmisano F. An acetylcholinesterase/choline oxidase-based amperometric biosensors as a liquid chromatography detector for acetylcholine and choline determination in brain tissue homogenates. Anal Chem 2001; 73:2875-82. [PMID: 11467530 DOI: 10.1021/ac000852h] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A liquid chromatography (LC) detector based on a fast response and sensitive bienzyme amperometric biosensor for acetylcholine (ACh) and choline (Ch) is described. The detector fabrication consisted of glutaraldehyde co-crosslinking of acetylcholinesterase and choline oxidase with bovine serum albumin on the Pt working electrode of a conventional thin-layer electrochemical flow cell. The influence of some experimental parameters (e.g., enzyme loading, thickness of the bienzyme layer, flow rate) on the detector characteristics has been studied in order to optimize the analyte response while minimizing band-broadening and distortion. A mobile phase consisting of a phosphate buffer (I, 0.1 M; pH, 6.5) containing 5 mM sodium hexane sulfonate and 10 mM tetramethylammonium phosphate was found to give very satisfactory resolution and peak shape in ion-pair, reversed-phase LC. Linear responses were observed over at least four decades and absolute detection limits (at a signal-to-noise ratio of 3) were 12 and 27 fmol injected for Ch and ACh, respectively. After one month of intensive use in the LC system, the detector retained about 70% of its initial sensitivity. The potential of the described approach is demonstrated by the simultaneous determination of Ch and ACh in rat brain tissue homogenates.
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Affiliation(s)
- A Guerrieri
- Dipartimento di Chimica, Università degli Studi di Bari, Italy
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Guerrieri A, De Benedetto GE, Palmisano F, Zambonin PG. Electrosynthesized non-conducting polymers as permselective membranes in amperometric enzyme electrodes: a glucose biosensor based on a co-crosslinked glucose oxidase/overoxidized polypyrrole bilayer. Biosens Bioelectron 1998; 13:103-12. [PMID: 9519453 DOI: 10.1016/s0956-5663(97)00064-x] [Citation(s) in RCA: 72] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A glucose amperometric biosensor based on glucose oxidase immobilized on an overoxidized polypyrrole (PPyox) platinum modified electrode, by glutaraldehyde co-crosslinking with bovine serum albumine, is described. The advantages of covalent immobilization techniques (e.g. high loading and long-term stability of the enzyme) are coupled with the excellent interferent rejection of electrosynthesized non-conducting polymers. The sensor showed an apparent Michaelis-Menten constant of 16 +/- 0.8 mM, a maximum current density of 490 microA/cm2 and a shelf lifetime of at least 3 months. Ascorbate, urate, cysteine and acetaminophen at their maximum physiological concentrations produced a glucose bias in the low micromolar range. Flow-injection response was linear up to 20 mM glucose with typical sensitivity of 84.0 +/- 1.5 nA/mM. The sensor was tested for glucose determination of untreated serum samples from both normal and diabetic subjects; results of amperometric assay compared well with those obtained by a standard enzymatic-colorimetric method.
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Affiliation(s)
- A Guerrieri
- Dipartimento di Chimica, Università della Basilicata, Potenza, Italy.
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Zompatori M, Battaglia M, Rimondi MR, Fasano L, Cavina M, Pacilli AM, Guerrieri A, Fabbri M, Vivacqua D, Biscarini M. [Quantitative assessment of pulmonary emphysema with computerized tomography. Comparison of the visual score and high resolution computerized tomography, expiratory density mask with spiral computerized tomography and respiratory function tests]. Radiol Med 1997; 93:374-81. [PMID: 9244913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
CT is the most accurate method to detect pulmonary emphysema in vivo. We compared prospectively two different methods for emphysema quantitation in 5 normal volunteers and 20 consecutive patients with chronic obstructive pulmonary disease (COPD). All subjects were submitted to function tests and HRCT; three scans were acquired at preselected levels during inspiration. The type and extent of pulmonary emphysema were defined, using the time-honored visual score system, by two independent observers under blind conditions. Disagreements were subsequently settled by consent. All subjects were also examined with expiratory spiral CT, using a density mask program, at two different cut-off levels (-850, -900 HU). Visual score and expiratory spiral density mask values (-850 HU) were significantly correlated (r = 0.86), but the visual extent of emphysema was always higher than shown by expiratory spiral CT. The emphysema extent assessed with both CT methods correlated with the function result of expiratory airflow obstruction and gas diffusion impairment (visual score versus forced expiratory volume in one second: r = -0.81, versus single breath carbon monoxide diffusion: r = -0.78. Spiral expiratory density mask -850 HU versus forced expiratory volume in one second: r = -0.85, versus single breath carbon monoxide diffusion: r = -0.77). When -900 HU was used as the cut-off value for the expiratory density mask, the correlation with single breath carbon monoxide diffusion worsened (r = -0.56). Visual score and expiratory density mask -850 HU gave similar results and permitted COPD patients to be clearly distinguished from normal controls (p < 0.01). Residual lung volume, measured with expiratory spiral CT correlated significantly with residual volume measured with the helium dilution technique (r = 0.66), but CT values were always higher than function results. We believe the true residual volume should lie somewhere in between the CT value and the function results with the helium dilution technique and conclude that the extent of pulmonary emphysema can be confidently assessed with CT methods. Finally, the simple visual score may be as reliable as such highly sophisticated new methods as the spiral expiratory density mask. Expiratory studies offer new insights into different normal and abnormal features of COPD and respiratory impairment.
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Affiliation(s)
- M Zompatori
- Radiologia padiglione Pneumonefro, Policlinico S. Orsola-Malpighi, Bologna
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Atzeni S, Piriz A, Graziadei S, Guerrieri A, Temporal M, Wouchuk J, Kang K, Lutz KJ, Maruhn J, Meyer-ter-Vehn J, Rickert A, Ramis R, Ramirez J. Target design activities for the European study group: heavy ion ignition facility. Fusion Engineering and Design 1996. [DOI: 10.1016/s0920-3796(96)00453-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Corcelli A, Lobasso S, Colella M, Trotta M, Guerrieri A, Palmisano F. Role of palmitic acid on the isolation and properties of halorhodopsin. Biochim Biophys Acta 1996; 1281:173-81. [PMID: 8664316 DOI: 10.1016/0005-2736(96)00007-7] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Purified halorhodopsin was isolated from Halobacterium halobium as previously described (Duschl, A. et al. (1988) J. Biol. Chem. 263, 17016-17022). Two purple bands were eluted from phenyl-Sepharose column, indicating the presence of differently retained halorhodopsin forms; the absorption spectra of the two halorhodopsin bands in the dark were not different. By gas chromatography/mass spectrometry we could identify palmitate (which is only a minor lipid component of archaeal cells) among lipids associated with purple fractions. Typically the palmitate content of the first eluted band was higher than that of the second, indicating a correlation between the palmitate content and the retention time; from one to two fatty acid molecules per halorhodopsin molecule were present depending on the fraction analysed. Very little or no palmitate was released from denatured halorhodopsin. By adding palmitate to buffers used in the phenyl-Sepharose chromatography, only one sharp purple band was collected, corresponding to the less retained halorhodopsin fraction. Pentadecanoic fatty acid could also affect the halorhodopsin chromatography. Chromatography of halorhodopsin in the presence of beta-mercaptoethanol showed only one band, corresponding to the more retrained halorhodopsin form. The two halorhodopsin fractions had different photoreactivity; the less retained halorhodopsin fraction (at higher palmitate content) showed an higher rate of decay of the absorbance at 570 nm upon illumination. By following the decay of the absorbance at 570 nm upon addition of alkali in the dark, we found that the two halorhodopsin fractions had different pKa values of deprotonation.
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Affiliation(s)
- A Corcelli
- Istituto di Fisiologia Generale, Università degli Studi, Bari, Italy
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Bottalico C, Micelli G, Guerrieri A, Palmisano F, Lorusso V, de Lena M. An on-line semi-automated solid-phase extraction procedure for high-performance liquid chromatographic determination of lonidamine in serum. J Pharm Biomed Anal 1995; 13:1349-53. [PMID: 8634352 DOI: 10.1016/0731-7085(95)01542-s] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
A semi-automated solid-phase extraction procedure on-line with gradient elution reversed-phase chromatography permits the determination of lonidamine and its metabolite in human serum. The average recovery from serum at the 2.5 micrograms ml-1 level was (92.8 +/- 3.4)%. The limit of quantitation for a 100 microliter sample size was 50 ng ml-1. The within-day (n = 5) and between-day (n = 5) relative standard deviations for lonidamine determination in serum samples spiked at the 2.5 micrograms ml-1 level were 2.7% and 4.5%, respectively.
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Guerrieri A, Sabbatini L, Zambonin PG, Ricci F, Pocobelli A, Cerulli L. Effect of antidenaturant drugs on lysozyme deposit formation on soft contact lenses by liquid chromatography--electrochemical detection. Biomaterials 1995; 16:1025-30. [PMID: 8580255 DOI: 10.1016/0142-9612(95)94911-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
The effect of some antidenaturant drugs on the formation of lysozyme deposits on soft contact lenses was investigated by in vitro experiments. Results were obtained which encourage the use of this strategy to reduce lens spoilage. At the same time emphasis is given to the possibility that some functionalities (i.e. lysine groups) present in drug molecules could promote protein adsorption. In order to evaluate at a quantitative level the effectiveness of the drugs used to minimize the formation of deposits on soft contact lenses, a selective method for the determination of adsorbed lysozyme was developed. It is based on the hydrolysis of the 'lens/adsorbed lysozyme' system, followed by high performance liquid chromatography coupled to electrochemical detection of the released tryptophan residues. The lysozyme calibration curve was linear up to 5 mg ml-1 and the detection limit was 5 ng injected.
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Affiliation(s)
- A Guerrieri
- Dipartimento di Chimica, Università della Basilicata, Potenza, Italy
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Centonze D, Guerrieri A, Palmisano F, Torsi L, Zambonin PG. Electrochemically prepared glucose biosensors: kinetic and faradaic processes involving ascorbic acid and role of the electropolymerized film in preventing electrode-fouling. ACTA ACUST UNITED AC 1994. [DOI: 10.1007/bf00323981] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Guerrieri A, Palmisano F, Zambonin PG, De Lena M, Lorusso V. Solid-phase extraction of fluoropyrimidine derivatives on a copper-modified strong cation exchanger: determination of doxifluridine, 5-fluorouracil and its main metabolites in serum by high-performance liquid chromatography with ultraviolet detection. J Chromatogr 1993; 617:71-7. [PMID: 8376540 DOI: 10.1016/0378-4347(93)80423-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
A copper-modified strong cation exchange stationary phase was used for the solid phase extraction of the antineoplastic drug doxifluridine (5'-deoxy-5-fluorouridine) and some of its main metabolites from human serum. Sorption of fluoropyrimidine derivatives due to complex formation with copper(II) was maximal at pH values around neutrality. Analytes were eluted by ligand exchange with ammonia. The average recoveries ranged from 70% to 108%. Reversed-phase chromatography with ultraviolet detection was used for the separation and quantitation of the analytes. The overall procedure has been applied to serum samples from patients receiving doxifluridine chemotherapy, and a pharmacokinetic profile has been derived.
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Affiliation(s)
- A Guerrieri
- Department of Chemistry, University of Bari, Italy
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Palmisano F, Berardi F, De Lena M, Guerrieri A, Lorusso V, Zambonin PG. Simultaneous determination of 5′-deoxy-5-fluorouridine, 5-fluorouracil and its main metabolites in body fluids by HPLC. Chromatographia 1992. [DOI: 10.1007/bf02262320] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Zambonin P, Guerrieri A, Rotunno T, Palmisano F. Simultaneous determination of γ-aminobutyric acid and polyamines by o-phthalaldehyde—β-mercaptoethanol precolumn derivatization and gradient elution liquid chromatography with electrochemical detection. Anal Chim Acta 1991. [DOI: 10.1016/0003-2670(91)87121-m] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Guerrieri A, Mora M, Catassi C, Giorgi PL. [The pediatrician and anorexia nervosa. Biological aspects]. Minerva Pediatr 1990; 42:297-306. [PMID: 2274007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Describing a case of anorexia nervosa the Authors review the clinical manifestations and organic alterations of this disease. The Authors point out the signs and symptoms which will usually suggest a diagnosis of anorexia nervosa. The course of the disease is monitored by the metabolic and hormonal analyses and the accompanying psychological features are underlined. The Authors present their therapeutic approach and emphasize the role of psychiatric treatment.
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Palmisano F, Rotunno T, Guerrieri A, Zambonin PG. Simultaneous determination of pseudouridine and creatinine in untreated urine by ion-pair liquid chromatography with diode-array ultraviolet detection. J Chromatogr 1989; 493:35-43. [PMID: 2778020 DOI: 10.1016/s0378-4347(00)82706-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A simple procedure for the simultaneous determination of pseudouridine and creatinine in urine using ion-pair high-performance liquid chromatography with ultraviolet detection is described. It consists of simply diluting the filtered urine with mobile phase (1:20) followed by direct chromatographic injection. A single analysis takes only 10 min. This method has been applied to the analysis of urine samples from normal donors and patients with different types of cancer. The mean values, means, of the peak-area ratio of pseudouridine to creatinine were 61.79.10(-3) and 81.92.10(-3) for male and female normal donors, respectively. Out of twenty-five urine samples of patients with cancer examined, nineteen (all the forteen males included) had values higher than means + 2 sigma.
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Affiliation(s)
- F Palmisano
- Dipartimento di Chimica dell'Universitá Bari Italy
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Palmisano F, Guerrieri A, Zambonin PG, Cataldi TR. Determination of methotrexate in untreated body fluids by micellar liquid chromatography. Anal Chem 1989; 61:946-50. [PMID: 2729602 DOI: 10.1021/ac00184a006] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A fast and sensitive method for determination of the antineoplastic drug methotrexate in untreated serum and urine is described. Reversed-phase liquid chromatography with sodium dodecyl sulfate (SDS) micellar mobile phase has been used with direct sample injection. Changes in mobile phase variables such as SDS concentration and/or pH profoundly affected drug retention. Recovery was quantitative and the detection limit (90 nM for a 20 microL sample size) was below the range normally monitored. Multichannel UV detection provided strong evidence regarding peak purity and peak identity.
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Tangorra A, Ferretti G, Curatola G, Guerrieri A, Catassi C, Giorgi PL, Bertoli E. Altered properties of platelet membrane in childhood obesity. Biochem Int 1988; 17:837-46. [PMID: 3254162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Using 1-(4-trimethylammoniumphenyl)-6-phenyl-1,3,5,hexatriene (TMA-DPH) as fluorescent probe, we have studied platelet membrane fluidity and thrombin induced exocytosis in ten obese children and fifteen controls. Our results indicate a decrease of membrane fluidity, as shown by an increase of fluorescence anisotropy, in platelets from obese patients in comparison with the controls. Associated with the changes in membrane fluidity, platelets of obese subjects showed a decreased sensitivity to thrombin stimulation.
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Affiliation(s)
- A Tangorra
- Istituto di Chimica Biologica, Facoltà di Medicina e Chirurgia, Università di Ancona, Italy
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Cataldi TR, Guerrieri A, Palmisano F, Zambonin PG. Adsorptive cathodic stripping voltammetry of amethopterine at a static mercury drop electrode and its application to serum drug determination. Analyst 1988; 113:869-73. [PMID: 3218761 DOI: 10.1039/an9881300869] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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Guerrieri A, Palmisano F. Anodic behavior of the antineoplastic agent amethopterin at a mercury electrode and its determination in body fluids by liquid chromatography with indirect anodic polarographic detection. Anal Chem 1987; 59:2127-30. [PMID: 3674430 DOI: 10.1021/ac00144a026] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Abstract
We measured the plasma zinc concentration in a group of children with chronic diarrhoea. Fifteen patients with untreated coeliac disease had a mean plasma zinc level significantly lower than that of healthy children (69 micrograms/dl vs 96 micrograms/dl). In patients with chronic post-enteritic diarrhoea (n = 70) the mean plasma zinc level was in the normal range (100 micrograms/dl). The latter result suggests that our country a secondary zinc deficiency is not a feature of chronic post-enteritic diarrhoea.
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Abstract
Macroamylasaemia and selective IgA deficiency were diagnosed in a 2 year old child who presented with persistent hyperamylasaemia. Macroamylasaemia is an isolated biochemical abnormality caused by aggregation of serum amylase activity with immunoglobulins. Early recognition of macroamylasaemia is important to avoid diagnosing pancreatic disease.
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Catassi C, D'Angelo G, Natalini G, Guerrieri A, Giorgi PL. Is the Entero-Test always successful? Pediatr Infect Dis 1986; 5:384-5. [PMID: 3725646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Giorgi PL, Catassi C, Guerrieri A. [Zinc and chronic enteropathies]. Pediatr Med Chir 1984; 6:625-36. [PMID: 6100131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
In recent years the nutritional importance of zinc has been well established; its deficiency and its symptoms have also been recognized in humans. Furthermore, Acrodermatitis Enteropathica has been isolated, a rare but severe disease, of which skin lesions, chronic diarrhoea and recurring infections are the main symptoms. The disease is related to the malfunctioning of intestinal absorption of zinc and can be treated by administering pharmacological doses of zinc orally. Good dietary sources of zinc are meat, fish and, to a less extent, human milk. The amount of zinc absorbed in the small intestine is influenced by other nutrients: some compounds inhibit this process (dietary fiber, phytate) while others (picolinic acid, citric acid), referred to as Zn-binding ligands (ZnBL) facilitate it. Citric acid is thought to be the ligand which accounts for the high level of bioavailability of zinc in human milk. zinc absorption occurs throughout the small intestine, not only in the prossimal tract (duodenum and jejunum) but also in the distal tract (ileum). Diarrhoea is one of the clinical manifestations of zinc deficiency, thus many illnesses distinguished by chronic diarrhoea entail a bad absorption of zinc. In fact, in some cases of chronic enteropathies in infants, like coeliac disease and seldom cystic fibrosis, a deficiency of zinc has been isolated. Some of the symptoms of Crohn's disease, like retarded growth and hypogonadism, have been related to hypozinchemia which is present in this illness. Finally, it is possible that some of the dietary treatments frequently used for persistent post-enteritis diarrhoea (i.e. cow's milk exclusion, abuse and misuse of dietary fiber like carrot and carub powder, use of soy formula) can constitute a scarce supply of zinc and therefore could promote the persistency of diarrhoea itself.
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