Reproducible brain-wide association studies require thousands of individuals

Magnetic resonance imaging (MRI) has transformed our understanding of the human brain through well-replicated mapping of abilities to specific structures (for example, lesion studies) and functions1-3 (for example, task functional MRI (fMRI)). Mental health research and care have yet to realize similar advances from MRI. A primary challenge has been replicating associations between inter-individual differences in brain structure or function and complex cognitive or mental health phenotypes (brain-wide association studies (BWAS)). Such BWAS have typically relied on sample sizes appropriate for classical brain mapping4 (the median neuroimaging study sample size is about 25), but potentially too small for capturing reproducible brain-behavioural phenotype associations5,6. Here we used three of the largest neuroimaging datasets currently available-with a total sample size of around 50,000 individuals-to quantify BWAS effect sizes and reproducibility as a function of sample size. BWAS associations were smaller than previously thought, resulting in statistically underpowered studies, inflated effect sizes and replication failures at typical sample sizes. As sample sizes grew into the thousands, replication rates began to improve and effect size inflation decreased. More robust BWAS effects were detected for functional MRI (versus structural), cognitive tests (versus mental health questionnaires) and multivariate methods (versus univariate). Smaller than expected brain-phenotype associations and variability across population subsamples can explain widespread BWAS replication failures. In contrast to non-BWAS approaches with larger effects (for example, lesions, interventions and within-person), BWAS reproducibility requires samples with thousands of individuals.

Variability of the egg hatch assay to survey benzimidazole resistance in nematodes of small ruminants under field conditions

The egg hatch assay (EHA) is one of the main in vitro methods for detection of benzimidazole resistance in nematode parasites of small ruminants. However, although the EHA has been standardised at the laboratory level, the diagnostic performance of this method has not been fully characterised for field screenings. In the present work, monthly variation of benzimidazole resistance estimated by EHA was surveyed over two years in three sheep flocks and in one goat and an additional sheep flock sharing the same pastures. Resistance was measured by calculating both the effective dose of thiabendazole (TBZ) that inhibited hatching of ≥50% of parasite eggs (ED₅₀) and the proportion (Pdd) of eggs hatching at a discriminating dose of 0.1 μg/ml TBZ. Pdd exhibited higher variability than ED₅₀, in agreement with the higher sensitivity of Pdd to changes in resistance levels. Both resistance parameters, however, were highly correlated, and their variation was similarly related to the same factors. Resistance levels differed among sheep flocks, and the resistance level of the goat flock was higher than that measured for the sheep flock sharing the same pasture. Moreover, monthly variation of resistance in goats did not mirror that recorded in sheep. Resistance levels varied seasonally, with the highest values recorded in the spring, and they were inversely related to the number of days that samples were stored under anaerobic conditions. In addition, they were directly associated with the relative abundance of Teladorsagia spp. but inversely related to the relative abundance of Haemonchus spp. After controlling for the effects of these identified factors for variation, inter-monthly sampling variation due to unknown factors was the main source of variability, accounting for more than 60-70% of variance for both resistance parameters and yielding absolute estimation errors higher than 0.06 for ED₅₀ or 0.2 for Pdd when resistance was estimated from a single sampling. Optimum sample size, estimated from variance components, suggested that at least 4-5 samplings would be needed to halve this absolute error, whereas additional samplings would slightly increase precision but at the cost of substantially increasing sampling effort. More research is needed to identify the main factors involved in this inter-sampling variation to standardise the implementation of EHA under field conditions.

Dynamics of infestation of cattle and pasture by gastrointestinal nematodes in an Atlantic temperate environment

The objective of the present study was to determine the dynamics of infestation of cattle and pasture by gastrointestinal nematodes in a mild humid environment in northwestern Spain. For this, infestation of pasture by free-living stages (L3), dynamics of faecal egg output, blood pepsinogen levels and worm burden in slaughtered animals were quantified. The results showed a high degree of annual variability, which was dependent on weather conditions. The seasons were clearly defined in the study area, with mild humid winters and relatively dry summers registered throughout the years of the study. Infestation of pasture by larvae varied from year to year, peaking during August in the first year, between August and December in the second year, and during October in the third year. The annual variation was mainly due to weather conditions, particularly the amount of rain in summer. The patterns of faecal egg output were similar in the first and third grazing seasons, with maximum levels observed in May/June; however, in the second year, the peak was reached in October. Blood pepsinogen levels increased from pasture turnout (March/April) until the end of the grazing season (November/December), reaching maximum values from August/September onwards. The nematode parasite species identified at necropsy were Ostertagia osteragi, O. lyrata, Cooperia oncophora, C. macmasteri, C. punctata and Trichuris ovis, with O. ostertagi and C. oncophora predominating. In faecal cultures, the following genera were also identified: Haemonchus, Trichostrongylus, Nematodirus, Bunostomum, Oesophagostomum and Strongyloides. There was a significant correlation (r=0.97, P<0.01) between worm burden (Ostertagia spp.) and pasture infestation (Ostertagia L3) 3 weeks prior to slaughter of the calves, and also between blood pepsinogen levels and pasture infestation by Ostertagia L3 (r=0.33, P<0.02). Correlations between worm burden and faecal egg output and between blood pepsinogen level and faecal egg output were not significant. The results obtained in the present study confirm that there is annual variability in the time-course of nematodosis in cattle, and demonstrate the importance of weather, particularly summer rainfall, in an Atlantic temperate environment.

Efficiency of Duddingtonia flagrans against Trichostrongyle infections of sheep on mountain pastures

The control of sheep nematode parasites in extensive mountain/transhumant management systems using the nematophagous fungus Duddingtonia flagrans was assessed in this study. Two groups of Churra Tensina ewes were allowed to graze for 8 weeks in autumn on two separate paddocks of infected pasture near their winter sheds in the valley. At lambing, ewes and their twin lambs were turned out into the same paddocks for the following 12 weeks. One group of ewes received a daily dose of 5 x 10(5) chlamydospores of Duddingtonia flagrans/kg live weight per day both in autumn and in spring, while the other group was used as a non-treated control. Daily dosing of grazing ewes with the fungus D. flagrans had a clear effect on reducing autumn pasture contamination. This had a subsequent effect on the over-wintering larvae population that was confirmed by a 20% lower worm burden of tracer lambs kept in early spring on the paddock previously grazed by fungus treated ewes. In spring, pasture contamination was also significantly reduced in the paddock grazed by fungi-treated ewes and their lambs showed a 61% lower worm burden and a better performance than the control lambs. Results herein show that fungal spores fed to sheep at critical times with regard to the epidemiology of parasite infection, can have a significant effect on the infective larvae present on pasture, which could further improve lambs performance. This novel approach to parasite control would be of interest amongst both organic and conventional sheep farmers operating in mountain regions.

Effect of nutritional status and fat reserves on the periparturient immune response to Haemonchus contortus infection in sheep

A study was made of the effect of body fat stored by ewes in early pregnancy on the subsequent immune response to gastrointestinal parasites around parturition. Pregnant ewes were given access to a lucerne pelleted diet either ad libitum (H) or at approximately 0.70 of their maintenance requirements (L) from the 42nd day of pregnancy in order to achieve a clearly differentiated level of body reserves by the 90th day of pregnancy. Then, all animals were put on the same plane of nutrition till 3 weeks after parturition. All ewes in both groups received 7,000 infective larvae of Haemonchus contortus per week for 7 weeks prior to lambing. The dietary treatments led to large differences between both groups of ewes in back-fat thickness that had a high correlation with mean plasma concentrations of leptin. In spite of the fact that animals were on the same plane of nutrition at infection time, host resistance, as measured by faecal egg counts, was significantly affected by the nutritional treatment established during early pregnancy. This effect produced noticeable differences in worm size and in worm burden at lambing. The response was accompanied by a marked increase in circulating eosinophils in better-fed ewes than in those maintained on a restricted diet in early pregnancy. Serum pepsinogen concentration, however, was inversely affected by the nutritional treatment till lambing, showing a maximum difference as early as 2 weeks after infection. The results support the view that higher levels of nutrition during early pregnancy enhance the expression of immunity against gastrointestinal parasites around parturition. Furthermore, the differences in the immune response appeared associated with serum leptin levels suggesting that leptin may be a key link between nutritional status and the protective immune reactivity against GI nematode infection.

STR data for 11 autosomal STR markers from Costa Rica, Central America

Allele frequencies for 11 STR autosomal loci (F13A01, F13B, FESFPS, LPL, CSF1PO, TH01, TPOX, VWA, D16S539, D7S820 and D13S317) were obtained from a sample of 200 unrelated individuals from Costa Rica, Central America.

Seasonal changes of gastrointestinal nematode burden in sheep under an intensive grazing system

A study was conducted of the monthly fluctuations of worm burdens and arrested development of gastrointestinal (GI) nematodes in sheep from a commercial farm of the Ebro valley (Spain). Twenty-four previously helminth-free female lambs (permanent lambs) grazed together with a flock of 500 resident ewes for 12 months following a three lambing/2-year reproductive management system. Two helminth-free lambs (tracer lambs) were added to the flock each month and allowed to graze for 4 weeks. Measurements were made of the population of infective larvae on the pasture, and of levels of serum pepsinogen and faecal worm eggs in ewes and lambs. Additionally, post-mortem worm counts from two tracer and two permanent lambs were used to establish the level of infection at monthly intervals. Three generations of parasites were identified in the experiment. The generation derived from eggs deposited the previous autumn gave rise to the first infection of the animals in January and May. This infection had low consequences for the animals, but it signified the initiation of infection and the resumption of the annual cycle of pasture contamination. The second generation, appearing between June and July, was the year's most important source of infection and gave rise to an outbreak of parasitism in permanent lambs. This was indicated by an increase in levels of serum pepsinogen, the appearance of diarrhoea, and an important decrease in lamb growth rates. The third wave of infection, occurring in October and November, there was less impact than the previous one with respect to the level of infection, but it was the origin of the future over-wintering population. Teladorsagia circumcincta was the predominant species, followed by Haemonchus contortus and Trichostrongylus colubriformis. The highest numbers of worm recovered from both the tracer and permanent lambs were observed in July, with average numbers of 7900 and 19,200, respectively. The inhibition phenomenon was more evident in permanent than in tracer lambs, and mainly affected H. contortus as evidenced by populations exhibiting arrested larvae values of over 70% in January and February. Results obtained in this study confirm the epidemiological importance of the over-wintering L(3) generation as the initial source of the animal's infection and the origin of the annual resumption of pasture contamination cycles.

Effect of level of feed intake on the development of gastrointestinal parasitism in growing lambs

A study was conducted to examine the role of nutrition in the development of gastrointestinal (GI) parasitism, performance and pathophysiology of parasitism in female lambs. Forty-four months old ewe lambs received for 6 weeks 0, 1500 or 7000 L(3) larvae of Teladorsagia circumcincta in two doses per week. The animals were given access to a pelleted diet to meet energy requirements for gaining weight close to their potential (H) or approximately 50% of it (L). The level of protein in the diet was 20-30% above requirements for both planes of nutrition. Measurements of body weight, serum pepsinogen concentration and faecal egg counts were taken at weekly intervals. All animals were slaughtered 2 weeks after the last larval dosing for estimation of worm count, carcass composition and reproductive tract development. Voluntary intake of infected animals decreased by approximately 10%. Both nutrition and infection influenced lamb performance and carcass composition. However, no direct effects on reproductive tract parameters due to the presence of infection were observed. The level of L(3) infection showed a significant effect not only on faecal egg counts and on worm burden, as it could be expected, but also on the proportion of females to males, which increased significantly with the level of infection. While the plane of nutrition did not show a significant effect on faecal egg counts or on worm burden, surprisingly, both female worm size and their fecundity decreased significantly with the level of nutrition. This response was accompanied by a significant increase in the concentration of circulating eosinophils suggesting that the immune response of lambs consuming high levels of energy was enhanced compared to that of lambs kept on a restricted diet. Results herein show that in young female lambs fed on adequate levels of protein, an improvement in energy supply does not only improve carcass characteristics but clearly enhances the development of resistance to GI nematodes infection. This may have decisive management implications for the control of parasitic infections in sustainable production systems.

Dynamics of pasture contamination by gastrointestinal nematodes of cattle under extensive management systems: proposal for strategic control

An epidemiological study of gastrointestinal nematode parasitism in beef cattle in mountainous areas of Spain was performed. The dynamics of contamination with gastrointestinal nematode larvae of Pyrenean pastures was studied over four years at five areas at different altitudes (900 m to 2100 m), grazed by animals according to traditional systems of beef cattle in mountainous areas. Grass samples were taken every two weeks and larval differentiation was performed. Worm egg counts of grazing animals were assessed in cows, heifers and calves. A consistent seasonal pattern of infective larvae on pasture through the study was observed. In hay meadows, located below 1000 m, infective larvae were found from the end of October until June of the following year. At higher altitudes (1200-2100 m), a bimodal pattern of pasture larvae contamination was observed with increases in late spring (March-June) and in late autumn (September-November). Ostertagia spp., Cooperia spp., Trichostrongylus spp., Oesophagostomum spp., and Nematodirus spp. were found, with Ostertagia spp. being the most frequently found, followed by Cooperia spp. The highest increase of larval contamination in autumn coincided with the grazing of animals in hay meadows. This elevated autumn larval population had a very important epidemiological role because these larvae remained as overwintered larvae until the following grazing season, starting the cycle of contamination of the animals.

Basque Country autochthonous population data on 7 short tandem repeat loci

Blood samples from 202-208 unrelated Basque Country autochthonous individuals were amplified, typed and their allele frequencies were determined. Results demonstrate the assumption of independence within and between the loci analyzed. Therefore, a Basque population database can be used in identity testing to estimate the frequency of a multiple PCR-based locus DNA profile.

Monthly fluctuations of worm burdens and hypobiosis of gastrointestinal nematodes of calves in extensive management systems in the Pyrenees (Spain)

Monthly fluctuations of worm burdens and arrested development of gastrointestinal nematodes in cattle from a mountainous region of Spain were studied. Fourteen previously helminth-naive calves grazed together with a herd of 120 cattle from May to November following the traditional extensive grazing system used in mountainous regions of Spain (permanent calves). Each month, throughout the grazing season, two helminth-naive calves (tracer calves) were added to the herd and allowed to graze for 4 weeks. Every 2 weeks, throughout the grazing period, faecal and blood samples from the permanent calves, and pasture grass samples for larval recovery were collected. Every 4 weeks, throughout the grazing period, two tracer and two permanent calves were removed from the herd and housed on concrete for 2 weeks before being slaughtered. The nematode parasite species identified from the animals were: Ostertagia ostertagi, O. lyrata, Teladorsagia circumcincta, Trichostrongylus axei, Cooperia oncophora, Trichostrongylus longispicularis, Capillaria bovis, Nematodirus helvetianus, Oesophagostomum radiatum, Chabertia ovina and Trichuris spp. O. ostertagi was the predominant species, followed by C. oncophora and T. axei. The highest numbers of worms recovered from the tracer calves were observed in May, June, September and November with average worm burdens of 4050, 3775, 2775 and 2825, respectively. These dates corresponded with 2 months of spring grazing in areas below 1000 m (May-June), the last month of grazing in areas higher than 1000 m (September), and the last month of autumn grazing in areas below 1000 m (November), respectively. The highest total worm burden (8000 worms per animal) was observed in the permanent calves in June after 2 months of grazing below 1000 m. The average total worm burden in the permanent calves during the study was 5825 worms per animal. As in other cool temperate regions of the Northern hemisphere, the highest percentage of larval inhibition was observed in autumn, with maximum levels of 63.4% for Ostertagia spp. and 89.3% for Cooperia oncophora. Similar inhibition levels were observed in parasites from both tracer and permanent calves, indicating that previous exposure was not the primary cause of larval inhibition.

Comparative susceptibility of Pyrenean and Brown Swiss calves to gastrointestinal nematodes in subclinical naturally acquired infections

The susceptibility of two common breeds of cattle in the Pyrenees, Brown Swiss and Pyrenean breed, to parasitism by gastrointestinal nematodes was studied. Twenty-two female calves (13 Brown Swiss and 9 Pyrenean), 3 months old with a mean weight of 112.8 +/- 18.33 and 103.3 +/- 17.11 kg respectively at the start of the study, were used. The calves began their first grazing season grazing with 200 cattle following the traditional grazing system for mountainous areas: Stabling during winter (December-April), grazing on harvesting meadows at an elevation of 900 m in the spring (May-June) and autumn (October-November), and grazing areas between 1200-2100 m during the summer (July-September). Faeces, blood samples and calves growth rate were taken at 2-week intervals throughout the grazing season. Faecal egg counts of gastrointestinal nematodes, level of serum pepsinogen, total serum protein and blood parameters were measured. The worm egg counts and Cooperia sp. counts were significantly smaller in the calves of Pyrenean breed than in Brown Swiss throughout the experiment. Numbers of eggs of the other genera of parasites found were smaller in the calves of Pyrenean breed than in calves of Brown Swiss breed, but no statistical differences were found. Blood was compared during two periods: the prepatent and patent periods. During the first period, no differences were found between the breeds for any parameter studied. However, during the patent period, Pyrenean animals had significantly greater numbers of erythrocytes, haemoglobin values and packed cell volume (PCV) values, and smaller numbers of eosinophils than animals of the Brown Swiss breed. No differences were found in the level of serum pepsinogen, total serum protein and live weight gains between the two breeds.

Efficacy of moxidectin against gastrointestinal nematode infections in sheep

The efficacy of moxidectin against gastrointestinal nematode infections was studied in 30 Fleischschaf x Rasa Aragonesa male lambs aged 3 months at the beginning of the experiment. The lambs were distributed in three groups of 10 animals each and experimentally infected with a mixture of an equal number of infective (L3) larvae from each of the following species: Haemonchus contortus (2000), Ostertagia circumcincta (2000), Trichostrongylus colubriformis (2000) and Trichostrongylus vitrinus (2000). Two groups of lambs were drenched with 0.2 mg moxidectin per kg body weight at 6 (Group B) and 21 (Group C) days post challenge while the third group of animals (Group A) remained untreated. The efficacy of the treatment based on worm counts 4 weeks post infection was of 100% against 4th stage larvae of all species and 100%, 99.98%, 100% and 100% against adults of H. contortus, O. circumcincta, T. colubriformis and T. vitrinus, respectively. Significant differences were found in daily weight gain between treated (Group B+C, 157.9 g day-1) and untreated lambs (Group A, 116 g day-1). No differences in feeding behaviour or health condition between treated and untreated lambs were observed.

Development and distribution of bovine trichostrongyle infective larvae on a pasture irrigated by flooding or by spraying

To compare the ecological effects of irrigation of a pasture, by flooding or by spraying, on the gastro-intestinal parasites of calves, two contiguous plots, one flooded and the other sprayed, were grazed for 10 days by naturally infected animals. Faeces, grass and soil under pats were sampled for 17-20 weeks for larval counts. The experiment was performed once in the spring and once in the summer. In the spring the maximal development rates in sprayed and flooded plots were 7.8 and 12.6 stage 3 larvae (L3)/100 eggs, respectively, for Cooperia and 3.5 and 3.2 L3/100 eggs, respectively for Ostertagia. During the summer, development rates were less than 1%. The main differences were found in the vertical distribution of the larvae: spraying favoured migration on grass and flooding favoured migration in soil, this finding being similar for both genera. The spatial distribution, studied by dividing each plot into 18 subplots, was a little more regular on grass in the sprayed plot. We conclude that the infection risk for calves is lower in flooded pasture than in sprayed pasture.

Grazing management strategies for the control of parasitic diseases in intensive sheep production systems

The effect of forward (F) and lateral (L) creep grazing, as two possible management alternatives of intensive production systems, on the gastro-intestinal nematode epidemiology of ewes and lambs was studied. Two groups of Romanov x Rasa Aragonesa ewes rearing twins and maintained on an autumn-contaminated pasture at a mean stocking density of 35 ewes ha-1, were used. Measurements were made of the population of infective larvae on the pasture, level of serum pepsinogen, worm eggs in faeces of ewes and lambs, and lambs' growth rate. In addition, post-mortem worm counts from 'indicator' lambs were used to establish the level of infection at each rotational grazing cycle. Two different waves of nematode infection were identified. In both treatments, the over-wintering larvae were responsible for the first outbreak of parasitism which was particularly important for lambs on Treatment F. The second wave of infection apparently came up with several overlapped L3 generations and had different effects on the animals of each group. While early pasture contamination was suffered by the lambs of Treatment F, lambs on Treatment L were not seriously affected until the end of the third grazing cycle (end of May). The different grazing behaviour of lambs in both treatments appeared to be related to the outbreak of parasitism in lambs. The general pattern of liveweight gains was similar for both groups of animals. However, during the first 90 days on pasture lamb growth rate under Treatment L (193 g day-1) was significantly higher than that under Treatment F (164 g day-1). The serum pepsinogen values, worm burdens and liveweight gains indicate that under intensive systems where lateral creep grazing is allowed for lambs, the level of parasite infection is maintained within acceptable limits for the first 90 days on pasture with lambs' growth rate close to their potential. However, the parasitic consequences of grazing under a forward creeping system indicate that anthelmintic drenchings should be used at lambing and at 3-week intervals thereafter during the first 42 days on pasture, after which the risk of contamination from the over-wintering population is over.

An epidemiological study of parasitic gastroenteritis in sheep under an intensive grazing system

Romanov X Rasa Aragonesa ewes rearing twins and kept on pasture at a mean stocking density of 35 ewes ha-1 were used to study the epidemiology of parasitic gastro-enteritis under an intensive grazing system on irrigated land in the northeast of Spain. Measurements were made of the population of infective larvae on the pasture, level of serum pepsinogen, faecal worm eggs in ewes and lambs, and lamb growth rates. In addition, postmortem worm counts from "indicator" lambs were used to establish the level of infection at each rotational grazing cycle. Two generations of parasites were identified in the experiment. One of them, derived from the eggs deposited the previous autumn, gave rise to the first infection of the animals in March and April. This was responsible for the first outbreak of parasitism in the lambs. This was indicated by an increase in serum pepsinogen levels, the appearance of diarrhoea and a significant decrease in lamb growth rates. Ostertagia spp., Nematodirus spp. and Trichostrongylus spp. were present. The second generation, which appeared during May, was derived from the eggs of the previous generation and gave rise to an outbreak of parasitism in the lambs at the beginning of May and the middle of June. Haemonchus spp. and Chabertia ovina were present. Under the conditions of this experiment, the overwintering larvae have an important epidemiological significance as the gastro-intestinal nematodes are one of the main limiting factors for developing intensive sheep production systems.