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Link-Gelles R, Ciesla AA, Mak J, Miller JD, Silk BJ, Lambrou AS, Paden CR, Shirk P, Britton A, Smith ZR, Fleming-Dutra KE. Early Estimates of Updated 2023-2024 (Monovalent XBB.1.5) COVID-19 Vaccine Effectiveness Against Symptomatic SARS-CoV-2 Infection Attributable to Co-Circulating Omicron Variants Among Immunocompetent Adults - Increasing Community Access to Testing Program, United States, September 2023-January 2024. MMWR Morb Mortal Wkly Rep 2024; 73:77-83. [PMID: 38300853 PMCID: PMC10843065 DOI: 10.15585/mmwr.mm7304a2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2024]
Abstract
On September 12, 2023, CDC's Advisory Committee on Immunization Practices recommended updated 2023-2024 (updated) COVID-19 vaccination with a monovalent XBB.1.5-derived vaccine for all persons aged ≥6 months to prevent COVID-19, including severe disease. During fall 2023, XBB lineages co-circulated with JN.1, an Omicron BA.2.86 lineage that emerged in September 2023. These variants have amino acid substitutions that might increase escape from neutralizing antibodies. XBB lineages predominated through December 2023, when JN.1 became predominant in the United States. Reduction or failure of spike gene (S-gene) amplification (i.e., S-gene target failure [SGTF]) in real-time reverse transcription-polymerase chain reaction testing is a time-dependent, proxy indicator of JN.1 infection. Data from the Increasing Community Access to Testing SARS-CoV-2 pharmacy testing program were analyzed to estimate updated COVID-19 vaccine effectiveness (VE) (i.e., receipt versus no receipt of updated vaccination) against symptomatic SARS-CoV-2 infection, including by SGTF result. Among 9,222 total eligible tests, overall VE among adults aged ≥18 years was 54% (95% CI = 46%-60%) at a median of 52 days after vaccination. Among 2,199 tests performed at a laboratory with SGTF testing, VE 60-119 days after vaccination was 49% (95% CI = 19%-68%) among tests exhibiting SGTF and 60% (95% CI = 35%-75%) among tests without SGTF. Updated COVID-19 vaccines provide protection against symptomatic infection, including against currently circulating lineages. CDC will continue monitoring VE, including for expected waning and against severe disease. All persons aged ≥6 months should receive an updated COVID-19 vaccine dose.
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Maneja RH, Miller JD, Flint JB, Alcaria JFA, Basali AU, Flandez AVB, Gopalan J, Duraisamy T, Abrogueña JBR, Bawazier AA, Das PB, Manokaran S, Asiri YY, Qasem A, Asfahani K, Qurban MAB. Extreme conditions reduce hatching success of green turtles (Chelonia mydas L.) at Karan Island, the major nesting site in the Arabian Gulf. Mar Pollut Bull 2023; 190:114801. [PMID: 36965265 DOI: 10.1016/j.marpolbul.2023.114801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 02/27/2023] [Accepted: 03/01/2023] [Indexed: 06/18/2023]
Abstract
Survival in the early life stages is a major factor determining the growth and stability of wildlife populations. For sea turtles, nest location must provide favorable conditions to support embryonic development. Hatching success and incubation environment of green turtle eggs were examined in July 2019 at Karan Island, a major nesting site for the species in the Arabian Gulf. Mean hatching success averaged at 38.8 % (range = 2.5-75.0 %, n = 14). Eggs that suffered early embryonic death (EED) and late embryonic death (LED) represented 19.8 % (range: 3.3-64.2 %) and 41.4 % (range: 4.8-92.6 %) of the clutch on average, respectively. Nest sand was either coarse (0.5-1 mm: mean 44.8 %, range = 30.4-56.9 % by dry weight, n = 14) or medium (0.25-0.5 mm: mean 33.6 %, range = 12.0-45.5 % by dry weight, n = 14). Mean sand moisture (4.0 %, range = 3.2-4.9 %, n = 14) was at the lower margin for successful development. Hatching success was significantly higher in clutches with sand salinity <1500 EC.uS/cm (n = 5) than those above 2500 EC.uS/cm (n = 5). Mean clutch temperatures at 1200 h increased by an average of 5.4 °C during the 50-d post-oviposition from 31.2 °C to 36.6 °C. Embryos experienced lethally high temperatures in addition to impacts of other environmental factors (salinity, moisture, sand grain size), which was related to reduced hatching success. Conservation initiatives must consider the synergistic influence of the above parameters in formulating strategies to improve the overall resilience of the green turtle population in the Arabian Gulf to anthropogenic and climate change-related stressors.
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Affiliation(s)
- R H Maneja
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia.
| | - J D Miller
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - J B Flint
- One Welfare and Sustainability Center, Department of Veterinary Preventive Medicine, College of Veterinary Medicine, The Ohio State University, Columbus 43210, OH, USA
| | - J F A Alcaria
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - A U Basali
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - A V B Flandez
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - J Gopalan
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - T Duraisamy
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - J B R Abrogueña
- Environmental Protection and Control Department, Royal Commission for Jubail and Yanbu, Jazan City for Primary and Downstream Industries, Saudi Arabia
| | - A A Bawazier
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - P B Das
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - S Manokaran
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - Y Y Asiri
- Center for Environment and Marine Studies, Research Institute, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia
| | - A Qasem
- Environmental Protection Department, Saudi Aramco, Dhahran, Saudi Arabia
| | - K Asfahani
- Environmental Protection Department, Saudi Aramco, Dhahran, Saudi Arabia
| | - M A B Qurban
- National Center for Wildlife, Riyadh, Saudi Arabia
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Fleming-Dutra KE, Ciesla AA, Roper LE, Smith ZR, Miller JD, Accorsi EK, Verani JR, Shang N, Derado G, Wiegand RE, Pilishvili T, Britton A, Link-Gelles R. Preliminary Estimates of Effectiveness of Monovalent mRNA Vaccines in Preventing Symptomatic SARS-CoV-2 Infection Among Children Aged 3-5 Years - Increasing Community Access to Testing Program, United States, July 2022-February 2023. MMWR Morb Mortal Wkly Rep 2023; 72:177-182. [PMID: 36795625 PMCID: PMC9949847 DOI: 10.15585/mmwr.mm7207a3] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Abstract
On June 18, 2022, the Advisory Committee on Immunization Practices (ACIP) issued interim recommendations for use of the 2-dose monovalent Moderna COVID-19 vaccine as a primary series for children aged 6 months-5 years* and the 3-dose monovalent Pfizer-BioNTech COVID-19 vaccine as a primary series for children aged 6 months-4 years,† based on safety, immunobridging, and limited efficacy data from clinical trials (1-3). Monovalent mRNA vaccine effectiveness (VE) against symptomatic SARS-CoV-2 infection was evaluated using the Increasing Community Access to Testing (ICATT) program, which provides SARS-CoV-2 testing to persons aged ≥3 years at pharmacy and community-based testing sites nationwide§ (4,5). Among children aged 3-5 years with one or more COVID-19-like illness symptoms¶ for whom a nucleic acid amplification test (NAAT) was performed during August 1, 2022-February 5, 2023, VE of 2 monovalent Moderna doses (complete primary series) against symptomatic infection was 60% (95% CI = 49% to 68%) 2 weeks-2 months after receipt of the second dose and 36% (95% CI = 15% to 52%) 3-4 months after receipt of the second dose. Among symptomatic children aged 3-4 years with NAATs performed during September 19, 2022-February 5, 2023, VE of 3 monovalent Pfizer-BioNTech doses (complete primary series) against symptomatic infection was 31% (95% CI = 7% to 49%) 2 weeks-4 months after receipt of the third dose; statistical power was not sufficient to estimate VE stratified by time since receipt of the third dose. Complete monovalent Moderna and Pfizer-BioNTech primary series vaccination provides protection for children aged 3-5 and 3-4 years, respectively, against symptomatic infection for at least the first 4 months after vaccination. CDC expanded recommendations for use of updated bivalent vaccines to children aged ≥6 months on December 9, 2022 (6), which might provide increased protection against currently circulating SARS-CoV-2 variants (7,8). Children should stay up to date with recommended COVID-19 vaccines, including completing the primary series; those who are eligible should receive a bivalent vaccine dose.
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Link-Gelles R, Ciesla AA, Roper LE, Scobie HM, Ali AR, Miller JD, Wiegand RE, Accorsi EK, Verani JR, Shang N, Derado G, Britton A, Smith ZR, Fleming-Dutra KE. Early Estimates of Bivalent mRNA Booster Dose Vaccine Effectiveness in Preventing Symptomatic SARS-CoV-2 Infection Attributable to Omicron BA.5- and XBB/XBB.1.5-Related Sublineages Among Immunocompetent Adults - Increasing Community Access to Testing Program, United States, December 2022-January 2023. MMWR Morb Mortal Wkly Rep 2023; 72:119-124. [PMID: 36730051 PMCID: PMC9927070 DOI: 10.15585/mmwr.mm7205e1] [Citation(s) in RCA: 68] [Impact Index Per Article: 68.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The SARS-CoV-2 Omicron sublineage XBB was first detected in the United States in August 2022.* XBB together with a sublineage, XBB.1.5, accounted for >50% of sequenced lineages in the Northeast by December 31, 2022, and 52% of sequenced lineages nationwide as of January 21, 2023. COVID-19 vaccine effectiveness (VE) can vary by SARS-CoV-2 variant; reduced VE has been observed against some variants, although this is dependent on the health outcome of interest. The goal of the U.S. COVID-19 vaccination program is to prevent severe disease, including hospitalization and death (1); however, VE against symptomatic infection can provide useful insight into vaccine protection against emerging variants in advance of VE estimates against more severe disease. Data from the Increasing Community Access to Testing (ICATT) national pharmacy program for SARS-CoV-2 testing were analyzed to estimate VE of updated (bivalent) mRNA COVID-19 vaccines against symptomatic infection caused by BA.5-related and XBB/XBB.1.5-related sublineages among immunocompetent adults during December 1, 2022–January 13, 2023. Reduction or failure of spike gene (S-gene) amplification (SGTF) in real-time reverse transcription–polymerase chain reaction (RT-PCR) was used as a proxy indicator of infection with likely BA.5-related sublineages and S-gene target presence (SGTP) of infection with likely XBB/XBB.1.5-related sublineages (2). Among 29,175 nucleic acid amplification tests (NAATs) with SGTF or SGTP results available from adults who had previously received 2–4 monovalent COVID-19 vaccine doses, the relative VE of a bivalent booster dose given 2–3 months earlier compared with no bivalent booster in persons aged 18–49 years was 52% against symptomatic BA.5 infection and 48% against symptomatic XBB/XBB.1.5 infection. As new SARS-CoV-2 variants emerge, continued vaccine effectiveness monitoring is important. Bivalent vaccines appear to provide additional protection against symptomatic BA.5-related sublineage and XBB/XBB.1.5-related sublineage infections in persons who had previously received 2, 3, or 4 monovalent vaccine doses. All persons should stay up to date with recommended COVID-19 vaccines, including receiving a bivalent booster dose when they are eligible.
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Turbyfill C, Thomas I, Agravat N, Prasher JM, Nett RJ, Stevens M, Ricaldi JN, Dunams TM, Brickhouse-Frazier L, Carter MD, Gebru Y, King A, May CS, Miller JD, Oguh C, Pullman A, Roman K, Rose C, Scherr R, Sidibe T, Soelaeman R, Weinstein J, Wilson T, Tran CH. The Impact of Community-Based Testing Sites and Gift Incentives on COVID-19 Testing Uptake in Maryland, April 29 - May 9, 2021. Am J Health Promot 2023; 37:228-232. [PMID: 36007095 PMCID: PMC9412132 DOI: 10.1177/08901171221119796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
PURPOSE Information on incentives for COVID-19 testing is needed to understand effective practices that encourage testing uptake. We describe characteristics of those who received an incentive after performing a rapid antigen test. DESIGN Cross-sectional descriptive analysis of survey data. SETTING During April 29-May 9, 2021, COVID-19 rapid antigen testing was offered in 2 Maryland cities. SAMPLE Convenience sample of 553 adults (≥18 years) who tested and received an incentive; 93% consented to survey. MEASURES Survey questions assessed reasons for testing, testing history, barriers, and demographics. ANALYSIS Robust Poisson regressions were used to determine characteristic differences based on testing history and between participants who would re-test in the future without an incentive vs participants who would not. RESULTS The most common reasons for testing were the desire to be tested (n = 280; 54%) and convenience of location (n = 146; 28%). Those motivated by an incentive to test (n = 110; 21%) were 5.83 times as likely to state they would not test again without an incentive, compared to those with other reasons for testing (95% CI: 2.67-12.72, P < .001). CRITICAL LIMITATIONS No comparative study group. CONCLUSION Results indicate internal motivation and convenience were prominent factors supporting testing uptake. Incentives may increase community testing participation, particularly among people who have never tested. Keywords COVID-19, pandemic, incentives, health behavior, community testing.
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Affiliation(s)
- Caitlin Turbyfill
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA,Oak Ridge Associated Universities, ORISE Fellowship, Oak Ridge, TN,
USA
| | - Isabel Thomas
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA,Oak Ridge Associated Universities, ORISE Fellowship, Oak Ridge, TN,
USA
| | - Namita Agravat
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA,Namita Agravat, MPH, CDC ELC Project
Officer, 1600 Clifton Rd., Atlanta, DGA, 30333, USA.
| | - Joanna M Prasher
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Randall J Nett
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Melody Stevens
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | | | - Tambra M Dunams
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | | | | | - Yonathan Gebru
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Ashley King
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Coral S May
- eTrueNorth with Health and Human
Services (HHS), Washington, DC, USA
| | | | - Chigo Oguh
- Maryland Department of Health
(MDH), Baltimore, ML, USA
| | - Amanda Pullman
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Kaylin Roman
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Charles Rose
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Robert Scherr
- eTrueNorth with Health and Human
Services (HHS), Washington, DC, USA
| | | | - Rieza Soelaeman
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | | | - Todd Wilson
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
| | - Cuc H Tran
- Centers for Disease Control and
Prevention (CDC), Atlanta, GA, USA
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6
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Link-Gelles R, Ciesla AA, Fleming-Dutra KE, Smith ZR, Britton A, Wiegand RE, Miller JD, Accorsi EK, Schrag SJ, Verani JR, Shang N, Derado G, Pilishvili T. Effectiveness of Bivalent mRNA Vaccines in Preventing Symptomatic SARS-CoV-2 Infection - Increasing Community Access to Testing Program, United States, September-November 2022. MMWR Morb Mortal Wkly Rep 2022; 71:1526-1530. [PMID: 36454688 PMCID: PMC9721148 DOI: 10.15585/mmwr.mm7148e1] [Citation(s) in RCA: 105] [Impact Index Per Article: 52.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
On September 1, 2022, bivalent COVID-19 mRNA vaccines, composed of components from the SARS-CoV-2 ancestral and Omicron BA.4/BA.5 strains, were recommended by the Advisory Committee on Immunization Practices (ACIP) to address reduced effectiveness of COVID-19 monovalent vaccines during SARS-CoV-2 Omicron variant predominance (1). Initial recommendations included persons aged ≥12 years (Pfizer-BioNTech) and ≥18 years (Moderna) who had completed at least a primary series of any Food and Drug Administration-authorized or -approved monovalent vaccine ≥2 months earlier (1). On October 12, 2022, the recommendation was expanded to include children aged 5-11 years. At the time of recommendation, immunogenicity data were available from clinical trials of bivalent vaccines composed of ancestral and Omicron BA.1 strains; however, no clinical efficacy data were available. In this study, effectiveness of the bivalent (Omicron BA.4/BA.5-containing) booster formulation against symptomatic SARS-CoV-2 infection was examined using data from the Increasing Community Access to Testing (ICATT) national SARS-CoV-2 testing program.* During September 14-November 11, 2022, a total of 360,626 nucleic acid amplification tests (NAATs) performed at 9,995 retail pharmacies for adults aged ≥18 years, who reported symptoms consistent with COVID-19 at the time of testing and no immunocompromising conditions, were included in the analysis. Relative vaccine effectiveness (rVE) of a bivalent booster dose compared with that of ≥2 monovalent vaccine doses among persons for whom 2-3 months and ≥8 months had elapsed since last monovalent dose was 30% and 56% among persons aged 18-49 years, 31% and 48% among persons aged 50-64 years, and 28% and 43% among persons aged ≥65 years, respectively. Bivalent mRNA booster doses provide additional protection against symptomatic SARS-CoV-2 in immunocompetent persons who previously received monovalent vaccine only, with relative benefits increasing with time since receipt of the most recent monovalent vaccine dose. Staying up to date with COVID-19 vaccination, including getting a bivalent booster dose when eligible, is critical to maximizing protection against COVID-19 (1).
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Al Ameri HM, Al Harthi S, Al Kiyumi A, Al Sariri TS, Al-Zaidan ASY, Antonopoulou M, Broderick AC, Chatting M, Das HS, Hesni MA, Mancini A, Miller JD, Mobaraki A, Rezaie-Atagholipour M, Pilcher NJ, Rees AF, Rodríguez-Zárate CJ, Smyth DM, Tanabe LK, Yaghmour F, Yusuf AA, Godley BJ. CORRIGENDUM: Biology and conservation of marine turtles in the northwestern Indian Ocean: a review. ENDANGER SPECIES RES 2022. [DOI: 10.3354/esr01183_c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Affiliation(s)
- HM Al Ameri
- Centre for Ecology and Conservation, College of Life and Environmental Sciences, Penryn Campus, University of Exeter, Cornwall TR10 9FE, UK
- Marine Assessment and Conservation Section, Terrestrial and Marine Biodiversity Sector, Environment Agency-Abu Dhabi, PO Box 45553, Abu Dhabi, United Arab Emirates
| | - S Al Harthi
- Environment Society of Oman, PO Box 3955, Ruwi PC112, Muscat, Sultanate of Oman
| | - A Al Kiyumi
- PO Box 106 PC134, Jawharat Al Shatie, Muscat, Sultanate of Oman
| | - TS Al Sariri
- Environment Authority, PO Box 323, Muscat, Sultanate of Oman
| | - ASY Al-Zaidan
- Department of Biological Sciences, Faculty of Science, Kuwait University, Safat 13060, Kuwait
| | - M Antonopoulou
- Emirates Nature-WWF, PO Box 73323, Abu Dhabi, United Arab Emirates
| | - AC Broderick
- Centre for Ecology and Conservation, College of Life and Environmental Sciences, Penryn Campus, University of Exeter, Cornwall TR10 9FE, UK
| | - M Chatting
- Environmental Science Centre, Qatar University, PO Box 2713, Doha, Qatar
| | - HS Das
- Marine Assessment and Conservation Section, Terrestrial and Marine Biodiversity Sector, Environment Agency-Abu Dhabi, PO Box 45553, Abu Dhabi, United Arab Emirates
| | - MA Hesni
- Zoological Museum of Department of Biology, Faculty of Sciences, Shahid Bahonar University of Kerman, Kerman, Iran
| | - A Mancini
- Grupo Tortuguero de las Californias AC, Calle Seis 141, 23098 La Paz, Baja California Sur, Mexico
| | - JD Miller
- Biological Research and Education Consultants, Missoula, Montana 59801, USA
| | - A Mobaraki
- Department of Environmental Sciences, Faculty of Natural Resources and Environment, Science and Research Branch, Islamic Azad University, Hesarak Boulevard, Tehran, Iran
| | - M Rezaie-Atagholipour
- Qeshm Environmental Conservation Institute (QECI), Qeshm Island, Hormozgan Province, Iran
| | - NJ Pilcher
- Marine Research Foundation, 88450 Kota Kinabalu, Sabah, Malaysia
| | - AF Rees
- Centre for Ecology and Conservation, College of Life and Environmental Sciences, Penryn Campus, University of Exeter, Cornwall TR10 9FE, UK
| | - CJ Rodríguez-Zárate
- Sharjah Desert Park, Scientific Research Department, Environment and Protected Areas Authority, Sharjah, United Arab Emirates
| | - DM Smyth
- School of Ocean Science, Marine Centre Wales, Bangor University, Bangor LL59 5AB, UK
| | - LK Tanabe
- Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia
| | - F Yaghmour
- Scientific Research Department, Hefaiyah Mountain Conservation Centre, Environment and Protected Areas Authority, Kalba, Sharjah, United Arab Emirates
| | - AA Yusuf
- Ministry of Fisheries and Marine Resources, Wardhiigley, Mogadishu, Somalia
| | - BJ Godley
- Centre for Ecology and Conservation, College of Life and Environmental Sciences, Penryn Campus, University of Exeter, Cornwall TR10 9FE, UK
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Al Ameri HM, Al Harthi S, Al Kiyumi A, Al Sariri TS, Al-Zaidan ASY, Antonopoulou M, Broderick AC, Chatting M, Das HS, Hesni MA, Mancini A, Miller JD, Mobaraki A, Rezaie-Atagholipour M, Pilcher NJ, Rees AF, Rodriguez-Zarate CJ, Smyth DM, Tanabe LK, Yaghmour F, Yusuf AA, Godley BJ. Biology and conservation of marine turtles in the North-Western Indian Ocean: a review. ENDANGER SPECIES RES 2022. [DOI: 10.3354/esr01183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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9
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Miller MF, Shi M, Motsinger-Reif A, Weinberg CR, Miller JD, Nichols E. Community-Based Testing Sites for SARS-CoV-2 - United States, March 2020-November 2021. MMWR Morb Mortal Wkly Rep 2021; 70:1706-1711. [PMID: 34882655 PMCID: PMC8659188 DOI: 10.15585/mmwr.mm7049a3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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10
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Bastard P, Michailidis E, Hoffmann HH, Chbihi M, Le Voyer T, Rosain J, Philippot Q, Seeleuthner Y, Gervais A, Materna M, de Oliveira PMN, Maia MDLS, Dinis Ano Bom AP, Azamor T, Araújo da Conceição D, Goudouris E, Homma A, Slesak G, Schäfer J, Pulendran B, Miller JD, Huits R, Yang R, Rosen LB, Bizien L, Lorenzo L, Chrabieh M, Erazo LV, Rozenberg F, Jeljeli MM, Béziat V, Holland SM, Cobat A, Notarangelo LD, Su HC, Ahmed R, Puel A, Zhang SY, Abel L, Seligman SJ, Zhang Q, MacDonald MR, Jouanguy E, Rice CM, Casanova JL. Auto-antibodies to type I IFNs can underlie adverse reactions to yellow fever live attenuated vaccine. J Exp Med 2021; 218:211761. [PMID: 33544838 PMCID: PMC7871457 DOI: 10.1084/jem.20202486] [Citation(s) in RCA: 111] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 12/21/2020] [Accepted: 01/19/2021] [Indexed: 12/21/2022] Open
Abstract
Yellow fever virus (YFV) live attenuated vaccine can, in rare cases, cause life-threatening disease, typically in patients with no previous history of severe viral illness. Autosomal recessive (AR) complete IFNAR1 deficiency was reported in one 12-yr-old patient. Here, we studied seven other previously healthy patients aged 13 to 80 yr with unexplained life-threatening YFV vaccine–associated disease. One 13-yr-old patient had AR complete IFNAR2 deficiency. Three other patients vaccinated at the ages of 47, 57, and 64 yr had high titers of circulating auto-Abs against at least 14 of the 17 individual type I IFNs. These antibodies were recently shown to underlie at least 10% of cases of life-threatening COVID-19 pneumonia. The auto-Abs were neutralizing in vitro, blocking the protective effect of IFN-α2 against YFV vaccine strains. AR IFNAR1 or IFNAR2 deficiency and neutralizing auto-Abs against type I IFNs thus accounted for more than half the cases of life-threatening YFV vaccine-associated disease studied here. Previously healthy subjects could be tested for both predispositions before anti-YFV vaccination.
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Affiliation(s)
- Paul Bastard
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | | | | | - Marwa Chbihi
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Tom Le Voyer
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Jérémie Rosain
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Quentin Philippot
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Yoann Seeleuthner
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France
| | - Adrian Gervais
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Marie Materna
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | | | | | - Ana Paula Dinis Ano Bom
- Laboratory of Immunological Techniques, Bio-Manguinhos, Fiocruz, Ministry of Health, Rio de Janeiro, Brazil
| | - Tamiris Azamor
- Laboratory of Immunological Techniques, Bio-Manguinhos, Fiocruz, Ministry of Health, Rio de Janeiro, Brazil
| | | | | | - Akira Homma
- Bio-Manguinhos, Fiocruz, Ministry of Health, Rio de Janeiro, Brazil
| | - Günther Slesak
- Tropical Medicine Department, Tropenklinik Paul-Lechler-Krankenhaus, Tübingen, Germany
| | - Johannes Schäfer
- Tropical Medicine Department, Tropenklinik Paul-Lechler-Krankenhaus, Tübingen, Germany
| | - Bali Pulendran
- Emory Vaccine Center and the Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA.,Institute for Immunity, Transplantation and Infection, Department of Pathology, Department of Microbiology and Immunology, Stanford University, Stanford, CA
| | - Joseph D Miller
- Emory Vaccine Center and the Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA.,Centers for Disease Control and Prevention, National Center for Emerging and Zoonotic Infectious Diseases, Division of Scientific Resources, Atlanta, GA
| | - Ralph Huits
- Department of Clinical Sciences, Institute of Tropical Medicine, Antwerp, Belgium
| | - Rui Yang
- St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Lindsey B Rosen
- Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD
| | - Lucy Bizien
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Lazaro Lorenzo
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Maya Chrabieh
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France
| | - Lucia V Erazo
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France
| | - Flore Rozenberg
- Laboratory of Virology, University of Paris, Cochin Hospital, Assistance Publique-Hôpitaux de Paris, Paris, France
| | - Mohamed Maxime Jeljeli
- Laboratory of Immunology, University of Paris, Cochin Hospital, Assistance Publique-Hôpitaux de Paris, Paris, France
| | - Vivien Béziat
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Steven M Holland
- Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD
| | - Aurélie Cobat
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Luigi D Notarangelo
- Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD
| | - Helen C Su
- Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD
| | - Rafi Ahmed
- Emory Vaccine Center and the Department of Microbiology and Immunology, Emory University School of Medicine, Atlanta, GA
| | - Anne Puel
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Shen-Ying Zhang
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Laurent Abel
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Stephen J Seligman
- St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY.,New York Medical College, Valhalla, NY
| | - Qian Zhang
- St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Margaret R MacDonald
- Laboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY
| | - Emmanuelle Jouanguy
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY
| | - Charles M Rice
- Laboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY
| | - Jean-Laurent Casanova
- Laboratory of Human Genetics of Infectious Diseases, Necker Branch, Institut National de la Santé et de la Recherche Médicale U1163, Necker Hospital for Sick Children, Paris, France.,University of Paris, Imagine Institute, Paris, France.,St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY.,Howard Hughes Medical Institute, New York, NY
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11
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Miller JD, Tröger JW, Engel SR, Seeger T, Leipertz A, Meyer TR. CH and NO planar laser-induced fluorescence and Rayleigh-scattering in turbulent flames using a multimode optical parametric oscillator. Appl Opt 2021; 60:98-108. [PMID: 33362084 DOI: 10.1364/ao.406237] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Accepted: 11/26/2020] [Indexed: 06/12/2023]
Abstract
An optical parametric oscillator (OPO) is developed and characterized for the simultaneous generation of ultraviolet (UV) and near-UV nanosecond laser pulses for the single-shot Rayleigh scattering and planar laser-induced-fluorescence (PLIF) imaging of methylidyne (CH) and nitric oxide (NO) in turbulent flames. The OPO is pumped by a multichannel, 8-pulse Nd:YAG laser cluster that produces up to 225 mJ/pulse at 355 nm with pulse spacing of 100 µs. The pulsed OPO has a conversion efficiency of 9.6% to the signal wavelength of ∼430nm when pumped by the multimode laser. Second harmonic conversion of the signal, with 3.8% efficiency, is used for the electronic excitation of the A-X (1,0) band of NO at ∼215nm, while the residual signal at 430 nm is used for direct excitation of the A-X (0,0) band of the CH radical and elastic Rayleigh scattering. The section of the OPO signal wavelength for simultaneous CH and NO PLIF imaging is performed with consideration of the pulse energy, interference from the reactant and product species, and the fluorescence signal intensity. The excitation wavelengths of 430.7 nm and 215.35 nm are studied in a laminar, premixed CH4-H2-NH3-air flame. Single-shot CH and NO PLIF and Rayleigh scatter imaging is demonstrated in a turbulent CH4-H2-NH3 diffusion flame using a high-speed intensified CMOS camera. Analysis of the complementary Rayleigh scattering and CH and NO PLIF enables identification and quantification of the high-temperature flame layers, the combustion product zones, and the fuel-jet core. Considerations for extension to simultaneous, 10-kHz-rate acquisition are discussed.
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12
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Miller JD, Slipchenko MN, Felver J, Roy S. Generation of high-energy, Gaussian laser pulses with tunable duration from 100 picoseconds to 1 millisecond. Opt Express 2020; 28:37811-37826. [PMID: 33379609 DOI: 10.1364/oe.409546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 10/30/2020] [Indexed: 06/12/2023]
Abstract
In this work, a variable-pulse-oscillator is developed and coupled with a burst-mode amplifier for generation of high-energy laser pulses with width of 100 ps to 1 ms and near-Gaussian temporal pulse shape. Pulse energy as high as 600 mJ is demonstrated at 1064 nm, with a super-Gaussian spatial profile and beam quality as good as 1.6 times the diffraction limit. A time-dependent pulse amplification model is developed and is in general agreement with experimentally measured values of output pulse energy and temporal pulse shape of the amplified pulses. Key performance parameters (pulse energy, temporal pulse shape, and spatial beam profile and quality) are analyzed as a function of pulse width across seven orders of magnitude. Additionally, the model is used to elucidate deviations between the simulated and experimental data, showing that the relationship between pulse width and output pulse energy is dominated by the variable-pulse-width oscillator performance, not the burst-mode amplifier.
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13
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Wallace BP, Stacy BA, Cuevas E, Holyoake C, Lara PH, Marcondes ACJ, Miller JD, Nijkamp H, Pilcher NJ, Robinson I, Rutherford N, Shigenaka G. Oil spills and sea turtles: documented effects and considerations for response and assessment efforts. ENDANGER SPECIES RES 2020. [DOI: 10.3354/esr01009] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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14
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Sydenham EW, Shephard GS, Thiel PG, Stockenström S, Snijman PW, Van Schalkwyk DJ, Castegnaro M, Kamimura H, Lauren DR, Miller JD, Nawaz S, Pascale M, Pittet A, Savard ME, Schillack VR, Scudamore K, Sizoo EA, Smith WA, Stack ME, Ueno Y, Viljoen CC, Visconti A, van der Westhuizen L. Liquid Chromatographic Determination of Fumonisins B1, B2, and B3 in Corn: AOAC–IUPAC Collaborative Study. J AOAC Int 2020. [DOI: 10.1093/jaoac/79.3.688] [Citation(s) in RCA: 96] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Abstract
A liquid chromatographic (LC) method for simultaneous determination of fumonisins B1 (FB1), B2 (FB2), and B3 (FB3) in corn was subjected to a collaborative study involving 12 participants from 10 countries, in which the accuracy and reproducibility characteristics of the method were established. Mean analyte recoveries from corn ranged from 81.1 to 84.2% for FB1 (at a spiking range of 500 to 8000 ng/g), from 75.9 to 81.9% for FB2 (at a spiking range of 200 to 3200 ng/g), and from 75.8 to 86.8% for FB3 (at a spiking range of 100 to 1600 ng/g). The valid data were statistically evaluated after exclusion of outliers. Relative standard deviations for within-laboratory repeatability ranged from 5.8 to 13.2% for FB1, from 7.2 to 17.5% for FB2, and from 8.0 to 17.2% for FB3. Relative standard deviations for between-laboratory reproducibility varied from 13.9 to 22.2% for FB1, from 15.8 to 26.7% for FB2, and from 19.5 to 24.9% for FB3. HORRAT ratios, calculated for the individual toxin analogues, ranged from 0.75 to 1.73. The LC method for determination of fumonisins B1, B2, and B3 in corn (at concentrations of 800–12800 ng total fumonisins/g) has been adopted by AOAC INTERNATIONAL.
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Affiliation(s)
- Eric W Sydenham
- Medical Research Council, Programme on Mycotoxins and Experimental Carcinogenesis, PO Box 19070, Tygerberg 7505, South Africa
| | - Gordon S Shephard
- Medical Research Council, Programme on Mycotoxins and Experimental Carcinogenesis, PO Box 19070, Tygerberg 7505, South Africa
| | - Pieter G Thiel
- Medical Research Council, Programme on Mycotoxins and Experimental Carcinogenesis, PO Box 19070, Tygerberg 7505, South Africa
| | - Sonja Stockenström
- Medical Research Council, Programme on Mycotoxins and Experimental Carcinogenesis, PO Box 19070, Tygerberg 7505, South Africa
| | - Petra W Snijman
- Medical Research Council, Programme on Mycotoxins and Experimental Carcinogenesis, PO Box 19070, Tygerberg 7505, South Africa
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15
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Gungoren C, Ozdemir O, Wang X, Ozkan SG, Miller JD. Effect of ultrasound on bubble-particle interaction in quartz-amine flotation system. Ultrason Sonochem 2019; 52:446-454. [PMID: 30595489 DOI: 10.1016/j.ultsonch.2018.12.023] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 12/12/2018] [Accepted: 12/13/2018] [Indexed: 05/22/2023]
Abstract
In this study, the effect of ultrasound (US) on the quartz-amine flotation system was investigated in detail by considering various surface chemistry techniques. The effect of ultrasound on particle size, shape factor, and surface roughness were characterized by using Brunauer-Emmett-Teller (BET) surface area measurements and scanning electron microscopy (SEM) analyses. The contact angle and bubble-particle attachment time, as well as adsorption density measurements was carried out to evaluate the effect of ultrasound on quartz surface wetting ability. In addition, atomic force microscopy (AFM) analyses were conducted, and finally micro-flotation studies were performed. As a result, it was found that the micro-flotation recovery at 2 × 10-5 M dodecyl amine hydrochloride (DAH) concentration increased from 45.45% to 63.64% with 30 W ultrasonic application at conditioning step. However, the micro-flotation recovery decreased to 37.50% when the ultrasonic power increased to 150 W. The results showed some effect of ultrasound on particle size, particle shape, and surface roughness in some extent. The increase in the contact angle and the decrease in the bubble-particle attachment time were observed. A slightly high adsorption density was measured. All these show a positive effect of ultrasound on quartz flotation with amine as a collector.
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Affiliation(s)
- C Gungoren
- Istanbul University-Cerrahpasa Engineering Faculty Mining Engineering Department, 34320, Avcilar, Istanbul, Turkey
| | - O Ozdemir
- Istanbul University-Cerrahpasa Engineering Faculty Mining Engineering Department, 34320, Avcilar, Istanbul, Turkey
| | - X Wang
- Department of Metallurgical Engineering, College of Mines and Earth Sciences, University of Utah, Salt Lake City, UT 84112, USA
| | - S G Ozkan
- Istanbul University-Cerrahpasa Engineering Faculty Mining Engineering Department, 34320, Avcilar, Istanbul, Turkey.
| | - J D Miller
- Department of Metallurgical Engineering, College of Mines and Earth Sciences, University of Utah, Salt Lake City, UT 84112, USA
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Usategui-Martín A, Liria-Loza A, Miller JD, Medina-Suárez M, Jiménez-Bordón S, Pérez-Mellado V, Montero D. Effects of incubation temperature on hatchling performance and phenotype in loggerhead sea turtle Caretta caretta. ENDANGER SPECIES RES 2019. [DOI: 10.3354/esr00935] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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17
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Wildermann NE, Gredzens C, Avens L, Barrios-Garrido HA, Bell I, Blumenthal J, Bolten AB, Braun McNeill J, Casale P, Di Domenico M, Domit C, Epperly SP, Godfrey MH, Godley BJ, González-Carman V, Hamann M, Hart KM, Ishihara T, Mansfield KL, Metz TL, Miller JD, Pilcher NJ, Read MA, Sasso C, Seminoff JA, Seney EE, Willard AS, Tomás J, Vélez-Rubio GM, Ware M, Williams JL, Wyneken J, Fuentes MMPB. Informing research priorities for immature sea turtles through expert elicitation. ENDANGER SPECIES RES 2018. [DOI: 10.3354/esr00916] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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18
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Hammack SD, Carter CD, Skiba AW, Fugger CA, Felver JJ, Miller JD, Gord JR, Lee T. 20 kHz CH 2O and OH PLIF with stereo PIV. Opt Lett 2018; 43:1115-1118. [PMID: 29489807 DOI: 10.1364/ol.43.001115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Accepted: 01/31/2018] [Indexed: 06/08/2023]
Abstract
Planar laser-induced fluorescence (PLIF) of hydroxyl (OH) and formaldehyde (CH2O) radicals was performed alongside stereo particle image velocimetry (PIV) at a 20 kHz repetition rate in a highly turbulent Bunsen flame. A dual-pulse burst-mode laser generated envelopes of 532 nm pulse pairs for PIV as well as a pair of 355 nm pulses, the first of which was used for CH2O PLIF. A diode-pumped solid-state Nd:YAG/dye laser system produced the excitation beam for the OH PLIF. The combined diagnostics produced simultaneous, temporally resolved two-dimensional fields of OH and CH2O and two-dimensional, three-component velocity fields, facilitating the observation of the interaction of fluid dynamics with flame fronts and preheat layers. The high-fidelity data acquired surpass the previous state of the art and demonstrate dual-pulse burst-mode laser technology with the ability to provide pulse pairs at both 532 and 355 nm with sufficient energy for scattering and fluorescence measurement at 20 kHz.
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19
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Jiang N, Hsu PS, Mance JG, Wu Y, Gragston M, Zhang Z, Miller JD, Gord JR, Roy S. High-speed 2D Raman imaging at elevated pressures. Opt Lett 2017; 42:3678-3681. [PMID: 28914931 DOI: 10.1364/ol.42.003678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Accepted: 08/27/2017] [Indexed: 06/07/2023]
Abstract
Two-dimensional (2D) Raman scattering at 10 kHz in non-reacting flow mixtures is demonstrated by employing a burst-mode laser with a long-duration pulse of about 70 ns and pulse energy of about 750 mJ at 532 nm. To avoid optical breakdown, the pulse width of the laser was varied in the range of 10-1000 ns. The effects of pulse shape, pulse energy, and harmonic conversion on 2D measurements are also studied. The applications of high-speed, single-shot, 2D imaging of CH4 and H2 jets in N2 at elevated pressures are demonstrated. In addition, the scalar dissipation rate of CH4 in N2 at 20 bar is determined, and multi-dimensional, multi-species, high-speed imaging of flows at elevated pressures is demonstrated.
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20
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Hsu PS, Lauriola D, Jiang N, Miller JD, Gord JR, Roy S. Fiber-coupled, UV-SWIR hyperspectral imaging sensor for combustion diagnostics. Appl Opt 2017; 56:6029-6034. [PMID: 29047927 DOI: 10.1364/ao.56.006029] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Accepted: 06/29/2017] [Indexed: 06/07/2023]
Abstract
A fiber-coupled, hyperspectral imaging sensor (HSIS) ranging from ultraviolet (UV) to short-wavelength-infrared (SWIR) wavelengths is developed for remote detection of planar [two-dimensional (2D)], spectrally resolved flame emission. The key component of the sensor is a dimension-reduction 2D-to-1D (one-dimensional) fiber-optic array that contains 1024 fibers and features high-UV optical transmission (>30% transmission at 310-340 nm, >90% at 340-2000 nm), wide operational wavelengths (300-2400 nm), and a compact and robust design (full length <5 cm). The flame-emission signals are transmitted to the remote HSIS through a 3-m-long, UV-grade, imaging fiber bundle that consists of 30,000 single-mode fibers. The design of the 2D-to-1D fiber array, the fiber-characterization process, and the sensor development are discussed in detail. 2D spectrally resolved measurements of CH*, OH*, and C2* distribution are made in premixed laminar flames. Improved chemiluminescence-based fuel/air ratio measurements using spectrally resolved detection are demonstrated. The results of the current study indicate that implementation of fiber-coupled HSIS is feasible in practical gas-turbine-engine test facilities with limited optical access.
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21
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Li ZN, Trost JF, Weber KM, LeMasters EH, Nasreen S, Esfandiari J, Gunasekera AH, McCausland M, Sturm-Ramirez K, Wrammert J, Gregory S, Veguilla V, Stevens J, Miller JD, Katz JM, Levine MZ. Novel multiplex assay platforms to detect influenza A hemagglutinin subtype-specific antibody responses for high-throughput and in-field applications. Influenza Other Respir Viruses 2017; 11:289-297. [PMID: 28207986 PMCID: PMC5410722 DOI: 10.1111/irv.12449] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/10/2017] [Indexed: 01/16/2023] Open
Abstract
Background Detections of influenza A subtype‐specific antibody responses are often complicated by the presence of cross‐reactive antibodies. We developed two novel multiplex platforms for antibody detection. The multiplexed magnetic fluorescence microsphere immunoassay (MAGPIX) is a high‐throughput laboratory‐based assay. Chembio Dual Path Platform (DPP) is a portable and rapid test that could be used in the field. Methods Twelve recombinant globular head domain hemagglutinin (GH HA1) antigens from A(H1N1)pdm09 (pH1N1), A(H2N2), A(H3N2), A(H5N1), A(H7N9), A(H9N2), A(H13N9), B/Victoria lineage, B/Yamagata lineage viruses, and protein A control were used. Human sera from U.S. residents either vaccinated (with H5N1 or pH1N1) or infected with pH1N1 influenza viruses and sera from live bird market workers in Bangladesh (BDPW) were evaluated. GH HA1 antigens and serum adsorption using full ectodomain recombinant hemagglutinins from A(pH1N1) and A(H3N2) were introduced into the platforms to reduce cross‐reactivity. Results Serum adsorption reduced cross‐reactivity to novel subtype HAs. Compared to traditional hemagglutination inhibition or microneutralization assays, when serum adsorption and the highest fold rise in signals were used to determine positivity, the correct subtype‐specific responses were identified in 86%‐100% of U.S. residents exposed to influenza antigens through vaccination or infection (N=49). For detection of H5N1‐specific antibodies in sera collected from BDPW, H5 sensitivity was 100% (six of six) for MAGPIX, 83% (five of six) for DPP, H5 specificity was 100% (15/15), and cross‐reactivity against other subtype was 0% (zero of six) for both platforms. Conclusion MAGPIX and DPP platforms can be utilized for high‐throughput and in‐field detection of novel influenza virus infections.
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Affiliation(s)
- Zhu-Nan Li
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Jessica F Trost
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.,Department of Microbiology and Immunology, Emory University, Atlanta, GA, USA
| | | | - Elizabeth H LeMasters
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Sharifa Nasreen
- Centre for Communicable Diseases, The International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | | | | | - Megan McCausland
- Department of Microbiology and Immunology, Emory University, Atlanta, GA, USA
| | - Katharine Sturm-Ramirez
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.,Centre for Communicable Diseases, The International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh
| | - Jens Wrammert
- Department of Microbiology and Immunology, Emory University, Atlanta, GA, USA
| | | | - Vic Veguilla
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - James Stevens
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Joseph D Miller
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Jacqueline M Katz
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Min Z Levine
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
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Li ZN, Weber KM, Limmer RA, Horne BJ, Stevens J, Schwerzmann J, Wrammert J, McCausland M, Phipps AJ, Hancock K, Jernigan DB, Levine M, Katz JM, Miller JD. Evaluation of multiplex assay platforms for detection of influenza hemagglutinin subtype specific antibody responses. J Virol Methods 2017; 243:61-67. [PMID: 28108183 DOI: 10.1016/j.jviromet.2017.01.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Revised: 01/11/2017] [Accepted: 01/12/2017] [Indexed: 11/26/2022]
Abstract
Influenza hemagglutination inhibition (HI) and virus microneutralization assays (MN) are widely used for seroprevalence studies. However, these assays have limited field portability and are difficult to fully automate for high throughput laboratory testing. To address these issues, three multiplex influenza subtype-specific antibody detection assays were developed using recombinant hemagglutinin antigens in combination with Chembio, Luminex®, and ForteBio® platforms. Assay sensitivity, specificity, and subtype cross-reactivity were evaluated using a panel of well characterized human sera. Compared to the traditional HI, assay sensitivity ranged from 87% to 92% and assay specificity in sera collected from unexposed persons ranged from 65% to 100% across the platforms. High assay specificity (86-100%) for A(H5N1) rHA was achieved for sera from exposed or unexposed to hetorosubtype influenza HAs. In contrast, assay specificity for A(H1N1)pdm09 rHA using sera collected from A/Vietnam/1204/2004 (H5N1) vaccinees in 2008 was low (22-30%) in all platforms. Although cross-reactivity against rHA subtype proteins was observed in each assay platform, the correct subtype specific responses were identified 78%-94% of the time when paired samples were available for analysis. These results show that high throughput and portable multiplex assays that incorporate rHA can be used to identify influenza subtype specific infections.
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Affiliation(s)
- Zhu-Nan Li
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329-4027 USA.
| | | | | | - Bobbi J Horne
- Battelle Memorial Institute, Columbus, OH 43201, USA
| | - James Stevens
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329-4027 USA
| | | | - Jens Wrammert
- Emory Vaccine Center, Emory University, Atlanta, GA 30322, USA
| | | | | | - Kathy Hancock
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329-4027 USA
| | - Daniel B Jernigan
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329-4027 USA
| | - Min Levine
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329-4027 USA
| | - Jacqueline M Katz
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329-4027 USA.
| | - Joseph D Miller
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30329-4027 USA
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Wu Y, Gragston M, Zhang Z, Miller JD. Spatially localized, see-through-wall temperature measurements in a flow reactor using radar REMPI. Opt Lett 2017; 42:53-56. [PMID: 28059176 DOI: 10.1364/ol.42.000053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
See-through-wall coherent microwave scattering from resonance-enhanced multiphoton ionization (REMPI) for rotational temperature measurements of molecular oxygen has been developed and demonstrated in a flow reactor at atmospheric pressure. Through limited, single-ended optical access, a laser beam was focused to generate local ionization of molecular oxygen in a heated quartz flow reactor enclosed by ceramic heating elements. Coherent microwaves were transmitted, and the subsequent scattering off the laser-induced plasma was received, through the optically opaque ceramic heater walls and used to acquire rotational spectra of molecular oxygen and to determine temperature. Both axial and radial air-temperature profiles were obtained in the flow reactor with an accuracy of ±20 K(±5%). The experimental results show good agreement with a steady-state computational heat transfer model. This technique shows great potential for non-invasive, high-fidelity measurement of spatially localized temperature and radical species concentration in combustion kinetic experiments and confined combustors constructed of advanced ceramic materials in which limited or non-existing optical access hinders usage of conventional optical diagnostic techniques to quantify thermal non-uniformity.
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Martin JR, Bonafede MM, Nelson JK, Booth AJ, Miller JD. Treatment Patterns Among Women with Newly Diagnosed Abnormal Uterine Bleeding. J Minim Invasive Gynecol 2016. [DOI: 10.1016/j.jmig.2016.08.235] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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25
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Miller JD, Slipchenko MN, Mance JG, Roy S, Gord JR. 1-kHz two-dimensional coherent anti-Stokes Raman scattering (2D-CARS) for gas-phase thermometry. Opt Express 2016; 24:24971-24979. [PMID: 27828437 DOI: 10.1364/oe.24.024971] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Two-dimensional gas-phase coherent anti-Stokes Raman scattering (2D-CARS) thermometry is demonstrated at 1 kHz in a heated jet. A hybrid femtosecond/picosecond CARS configuration is used in a two-beam phase-matching arrangement with a 100-femtosecond pump/Stokes pulse and a 107-picosecond probe pulse. The femtosecond pulse is generated using a mode-locked oscillator and regenerative amplifier that is synchronized to a separate picosecond oscillator and burst-mode amplifier. The CARS signal is spectrally dispersed in a custom imaging spectrometer and detected using a high-speed camera with image intensifier. 1-kHz, single-shot planar measurements at room temperature exhibit error of 2.6% and shot-to-shot variations of 2.6%. The spatial variation in measured temperature is 9.4%. 2D-CARS temperature measurements are demonstrated in a heated O2 jet to capture the spatiotemporal evolution of the temperature field.
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26
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Cuellar-Barboza AB, Frye MA, Grothe K, Prieto ML, Schneekloth TD, Loukianova LL, Hall-Flavin DK, Clark MM, Karpyak VM, Miller JD, Abulseoud OA. Change in consumption patterns for treatment-seeking patients with alcohol use disorder post-bariatric surgery. J Psychosom Res 2015; 78:199-204. [PMID: 25258356 DOI: 10.1016/j.jpsychores.2014.06.019] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Revised: 06/25/2014] [Accepted: 06/27/2014] [Indexed: 02/07/2023]
Abstract
OBJECTIVE The aim of this study is to describe the clinical phenotype of alcohol use disorder (AUD) treatment-seeking patients with Roux-en-Y Gastric Bypass Surgery (RYGB) history; and to compare it to AUD obese non-RYGB controls. METHODS Retrospective study of electronic medical records for all patients 30-60years treated at the Mayo Clinic Addiction Treatment Program, between June, 2004 and July, 2012. Comparisons were performed with consumption patterns pre-RYGB and at time of treatment; excluding patients with AUD treatments pre-RYGB. RESULTS Forty-one out of 823 patients had a RYGB history (4.9%); 122 controls were selected. Compared to controls, the RYGB group had significantly more females [n=29 (70.7%) vs. n=35 (28.7%) p<0.0001]; and met AUD criteria at a significantly earlier age (19.1±0.4 vs. 25.0±1years old, p=0.002). On average, RYGB patients reported resuming alcohol consumption 1.4±0.2years post-surgery, meeting criteria for AUD at 3.1±0.5years and seeking treatment at 5.4±0.3years postoperatively. Pre-surgical drinks per day were significantly fewer compared to post-surgical consumption [2.5±0.4 vs. 8.1±1.3, p=0.009]. Prior to admission, RYGB patients reported fewer drinking days per week vs. controls (4.7±0.3 vs. 5.5±1.8days, p=0.02). Neither RYGB, gender, age nor BMI was associated with differential drinking patterns. CONCLUSION The results of this study suggest that some patients develop progressive AUD several years following RYGB. This observation has important clinical implications, calling for AUD-preventive measures following RYGB. Further large-scale longitudinal studies are needed to clarify the association between RYGB and AUD onset.
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Affiliation(s)
- Alfredo B Cuellar-Barboza
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States; Department of Psychiatry, Universidad Autonoma de Nuevo Leon, Monterrey, Mexico
| | - Mark A Frye
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States
| | - Karen Grothe
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States
| | - Miguel L Prieto
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States; Facultad de Medicina, Departamento de Psiquiatría, Universidad de los Andes, Santiago, Chile
| | - Terry D Schneekloth
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States
| | - Larissa L Loukianova
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States
| | - Daniel K Hall-Flavin
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States
| | - Matthew M Clark
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States
| | - Victor M Karpyak
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States
| | - Joseph D Miller
- Department of Pharmacology, The American University of the Caribbean School of Medicine, United States
| | - Osama A Abulseoud
- Department of Psychiatry and Psychology, Mayo Clinic, Rochester, MN, United States.
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Le D, Miller JD, Ganusov VV. Mathematical modeling provides kinetic details of the human immune response to vaccination. Front Cell Infect Microbiol 2015; 4:177. [PMID: 25621280 PMCID: PMC4288384 DOI: 10.3389/fcimb.2014.00177] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Accepted: 12/04/2014] [Indexed: 02/01/2023] Open
Abstract
With major advances in experimental techniques to track antigen-specific immune responses many basic questions on the kinetics of virus-specific immunity in humans remain unanswered. To gain insights into kinetics of T and B cell responses in human volunteers we combined mathematical models and experimental data from recent studies employing vaccines against yellow fever and smallpox. Yellow fever virus-specific CD8 T cell population expanded slowly with the average doubling time of 2 days peaking 2.5 weeks post immunization. Interestingly, we found that the peak of the yellow fever-specific CD8 T cell response was determined by the rate of T cell proliferation and not by the precursor frequency of antigen-specific cells as has been suggested in several studies in mice. We also found that while the frequency of virus-specific T cells increased slowly, the slow increase could still accurately explain clearance of yellow fever virus in the blood. Our additional mathematical model described well the kinetics of virus-specific antibody-secreting cell and antibody response to vaccinia virus in vaccinated individuals suggesting that most of antibodies in 3 months post immunization were derived from the population of circulating antibody-secreting cells. Taken together, our analysis provided novel insights into mechanisms by which live vaccines induce immunity to viral infections and highlighted challenges of applying methods of mathematical modeling to the current, state-of-the-art yet limited immunological data.
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Affiliation(s)
- Dustin Le
- Department of Microbiology, University of TennesseeKnoxville, TN, USA
| | - Joseph D. Miller
- Hope Clinic of the Emory Vaccine Center, Emory University School of MedicineAtlanta, GA, USA
| | - Vitaly V. Ganusov
- Department of Microbiology, University of TennesseeKnoxville, TN, USA
- Department of Mathematics, University of TennesseeKnoxville, TN, USA
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28
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Althouse BM, Scarpino SV, Meyers LA, Ayers JW, Bargsten M, Baumbach J, Brownstein JS, Castro L, Clapham H, Cummings DAT, Del Valle S, Eubank S, Fairchild G, Finelli L, Generous N, George D, Harper DR, Hébert-Dufresne L, Johansson MA, Konty K, Lipsitch M, Milinovich G, Miller JD, Nsoesie EO, Olson DR, Paul M, Polgreen PM, Priedhorsky R, Read JM, Rodríguez-Barraquer I, Smith DJ, Stefansen C, Swerdlow DL, Thompson D, Vespignani A, Wesolowski A. Enhancing disease surveillance with novel data streams: challenges and opportunities. EPJ Data Sci 2015; 4:17. [PMID: 27990325 PMCID: PMC5156315 DOI: 10.1140/epjds/s13688-015-0054-0] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
Novel data streams (NDS), such as web search data or social media updates, hold promise for enhancing the capabilities of public health surveillance. In this paper, we outline a conceptual framework for integrating NDS into current public health surveillance. Our approach focuses on two key questions: What are the opportunities for using NDS and what are the minimal tests of validity and utility that must be applied when using NDS? Identifying these opportunities will necessitate the involvement of public health authorities and an appreciation of the diversity of objectives and scales across agencies at different levels (local, state, national, international). We present the case that clearly articulating surveillance objectives and systematically evaluating NDS and comparing the performance of NDS to existing surveillance data and alternative NDS data is critical and has not sufficiently been addressed in many applications of NDS currently in the literature.
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Affiliation(s)
| | | | - Lauren Ancel Meyers
- Santa Fe Institute, Santa Fe, NM USA
- The University of Texas at Austin, Austin, TX USA
| | | | | | | | - John S Brownstein
- Children’s Hospital Informatics Program, Boston Children’s Hospital, Boston, MA USA
- Department of Pediatrics, Harvard Medical School, Boston, MA USA
- Department of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal, QC Canada
| | - Lauren Castro
- Defense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, NM USA
| | - Hannah Clapham
- Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD USA
| | - Derek AT Cummings
- Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD USA
| | - Sara Del Valle
- Defense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, NM USA
| | - Stephen Eubank
- Virginia BioInformatics Institute and Department of Population Health Sciences, Virginia Tech, Blacksburg, VA USA
| | - Geoffrey Fairchild
- Defense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, NM USA
| | - Lyn Finelli
- Influenza Division, Centers for Disease Control and Prevention, Atlanta, GA USA
| | - Nicholas Generous
- Defense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, NM USA
| | - Dylan George
- Biomedical Advanced Research and Development Authority (BARDA), Assistant Secretary for Preparedness and Response (ASPR), Department of Health and Human Services, Washington, DC USA
| | - David R Harper
- Chatham House, 10 St James’s Square, London, SW1Y 4LE UK
| | | | - Michael A Johansson
- Division of Vector-Borne Diseases, NCEZID, Centers for Disease Control and Prevention, San Juan, PR USA
| | - Kevin Konty
- Division of Epidemiology, New York City Department of Health and Mental Hygiene, New York, NY USA
| | - Marc Lipsitch
- Communicable Disease Dynamics, Harvard School of Public Health, Boston, MA USA
| | - Gabriel Milinovich
- School of Population Health, The University of Queensland, Brisbane, QLD Australia
| | - Joseph D Miller
- Division of Vector-Borne Diseases, NCEZID, Centers for Disease Control and Prevention, Atlanta, GA USA
| | - Elaine O Nsoesie
- Children’s Hospital Informatics Program, Boston Children’s Hospital, Boston, MA USA
- Department of Pediatrics, Harvard Medical School, Boston, MA USA
| | - Donald R Olson
- Division of Epidemiology, New York City Department of Health and Mental Hygiene, New York, NY USA
| | - Michael Paul
- Department of Computer Science, Johns Hopkins University, Baltimore, MD USA
| | | | - Reid Priedhorsky
- Defense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, NM USA
| | - Jonathan M Read
- Department of Epidemiology and Population Health, Institute of Infection and Global Health, University of Liverpool, Liverpool, CH64 7TE UK
- Health Protection Research Unit in Emerging and Zoonotic Infections, NIHR, Liverpool, L69 7BE UK
| | | | - Derek J Smith
- Department of Zoology, University of Cambridge, Cambridge, CB2 3EJ UK
| | | | - David L Swerdlow
- National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA USA
| | | | - Alessandro Vespignani
- Laboratory for the Modeling of Biological and Socio-technical Systems, Northeastern University, Boston, MA USA
| | - Amy Wesolowski
- Communicable Disease Dynamics, Harvard School of Public Health, Boston, MA USA
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29
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Dedic CE, Miller JD, Meyer TR. Dual-pump vibrational/rotational femtosecond/picosecond coherent anti-Stokes Raman scattering temperature and species measurements. Opt Lett 2014; 39:6608-6611. [PMID: 25490633 DOI: 10.1364/ol.39.006608] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A method for simultaneous ro-vibrational and pure-rotational hybrid femtosecond/picosecond coherent anti-Stokes Raman scattering (fs/ps CARS) is presented for multi-species detection and improved temperature sensitivity from room temperature to flame conditions. N₂/CH₄ vibrational and N₂/O₂/H₂ rotational Raman coherences are excited simultaneously using fs pump pulses at 660 and 798 nm, respectively, and a common fs Stokes pulse at 798 nm. A fourth narrowband 798 nm ps pulse probes all coherence states at a time delay that minimizes nonresonant background and the effects of collisions. The transition strength is concentration dependent, while the distribution among observed transitions is related to temperature through the Boltzmann distribution. The broadband excitation pulses and multiplexed signal are demonstrated for accurate thermometry from 298 to 2400 K and concentration measurements of four key combustion species.
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Roy S, Miller JD, Slipchenko MN, Hsu PS, Mance JG, Meyer TR, Gord JR. 100-ps-pulse-duration, 100-J burst-mode laser for kHz-MHz flow diagnostics. Opt Lett 2014; 39:6462-6465. [PMID: 25490494 DOI: 10.1364/ol.39.006462] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A high-speed, master-oscillator power-amplifier burst-mode laser with ∼100 ps pulse duration is demonstrated with output energy up to 110 J per burst at 1064 nm and second-harmonic conversion efficiency up to 67% in a KD*P crystal. The output energy is distributed across 100 to 10,000 sequential laser pulses, with 10 kHz to 1 MHz repetition rate, respectively, over 10 ms burst duration. The performance of the 100 ps burst-mode laser is evaluated and been found to compare favorably with that of a similar design that employs a conventional ∼8 ns pulse duration. The nearly transform-limited spectral bandwidth of 0.15 cm(-1) at 532 nm is ideal for a wide range of linear and nonlinear spectroscopic techniques, and the 100 picosecond pulse duration is optimal for fiber-coupled spectroscopic measurements in harsh reacting-flow environments.
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31
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Basinski C, Lukes A, Miller JD, Lenhart G, Bonafede M, Troeger K. Treatment Complication and Reintervention Rates Following Endometrial Ablation with the NovaSure® System Versus Other Global Endometrial Ablation Modalities. J Minim Invasive Gynecol 2014. [DOI: 10.1016/j.jmig.2014.08.221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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32
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Pakdaman S, Wilcox RE, Miller JD. Theories and treatment of drug dependency: a neurochemical perspective. Curr Mol Pharmacol 2014; 7:52-66. [PMID: 25324047 DOI: 10.2174/1874467207666141017150625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2014] [Revised: 10/03/2014] [Accepted: 10/14/2014] [Indexed: 11/22/2022]
Abstract
Treatment of chemical dependence ("addiction") requires an understanding of its effects on the brain. To guide research in the area of chemical dependence, several foundational theories have been developed. These include the incentive salience, receptor down-regulation, opponent process, and psychomotor stimulant theories. These have been important both in summarizing and in guiding investigations. However, the extant theories do not provide a single unified framework nor have they yielded all of the guidance necessary for effective chemical dependence treatment. The present paper summarizes and then integrates these theories and suggests some implications for the treatment followed by this integration.
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Affiliation(s)
| | | | - Joseph D Miller
- Department of Pharmacology, American University of the Caribbean School of Medicine, #1 University Drive at Jordan Road, Cupecoy, St. Maarten (formerly Netherlands Antilles), USA.
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Desroches TC, McMullin DR, Miller JD. Extrolites of Wallemia sebi, a very common fungus in the built environment. Indoor Air 2014; 24:533-542. [PMID: 24471934 DOI: 10.1111/ina.12100] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2013] [Accepted: 01/21/2014] [Indexed: 06/03/2023]
Abstract
Wallemia sebi has been primarily known as a spoilage fungus of dried, salted fish and other foods that are salty or sweet. However, this fungus is also very common in house dust. The health effects of chronic exposure to mold and dampness are known to be associated with both allergens and various inflammatory compounds, including the secondary metabolites of building associated fungi and their allergens. IgE sensitization to W. sebi has been long reported from housing and occupational exposures. However, its allergens have not been described previously. Strains from food have been reported to produce a number of compounds with modest toxicity. Strains from the built environment in Canada produced a number of metabolites including the known compound walleminone and a new compound 1-benzylhexahydroimidazo [1,5-α] pyridine-3,5-dione which we call wallimidione. Based on an in silico analysis, wallimidione is likely the most toxic of the metabolites reported to date from W. sebi. We found that the primary human antigen of W. sebi is a 47 kDa excreted cellulase present in high concentrations in W. sebi arthrospores. This species is a basidiomycete and, unsurprisingly, the antigen was not found in extracts of other fungi common in the built environment, all ascomycetes.
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Affiliation(s)
- T C Desroches
- Ottawa Carleton Institute of Chemistry, Carleton University, Ottawa, ON, Canada
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34
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Li ZN, Carney PJ, Lin SC, Li J, Chang JC, Veguilla V, Stevens J, Miller JD, Levine M, Katz JM, Hancock K. Improved specificity and reduced subtype cross-reactivity for antibody detection by ELISA using globular head domain recombinant hemagglutinin. J Virol Methods 2014; 209:121-5. [PMID: 25239367 DOI: 10.1016/j.jviromet.2014.09.006] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2014] [Revised: 08/28/2014] [Accepted: 09/09/2014] [Indexed: 10/24/2022]
Abstract
The relative performance of ELISA using globular head domain (GH) and ectodomain hemagglutinins (HAs) as antigens to detect influenza A virus IgG antibody responses was assessed. Assay sensitivity and subtype cross-reactivity were evaluated using sera collected from recipients of monovalent H5N1 vaccine and A(H1N1)pdm09 virus-infected persons. Assay specificity was determined using collections of sera from either individuals unexposed to either H5N1 or A(H1N1)pdm09 viruses or exposed to H5N1 or A(H1N1)pdm09 viruses through vaccination or infection, respectively. ELISA using GH HA showed a similar degree of sensitivity, significantly higher specificity, and significantly lower subtype cross-reactivity compared to ELISA using ectodomain HA.
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Affiliation(s)
- Zhu-Nan Li
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.
| | - Paul J Carney
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Seh-Ching Lin
- Scientific Resources Division, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Ji Li
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Jessie C Chang
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Vic Veguilla
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - James Stevens
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Joseph D Miller
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Min Levine
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Jacqueline M Katz
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
| | - Kathy Hancock
- Influenza Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
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35
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Slipchenko MN, Miller JD, Roy S, Meyer TR, Mance JG, Gord JR. 100 kHz, 100 ms, 400 J burst-mode laser with dual-wavelength diode-pumped amplifiers. Opt Lett 2014; 39:4735-4738. [PMID: 25121861 DOI: 10.1364/ol.39.004735] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The burst duration of an all-diode-pumped burst-mode laser is extended to 100 ms and 100 kHz (10,000 pulses) by utilizing dual-wavelength diode pumping. Total energies of 225 J at 10 kHz and 400 J at 100 kHz are achieved during the 100 ms burst period at 1064 nm. This represents an order-of-magnitude increase in the number of pulses compared with prior work, while maintaining similar or higher pulse energies. Amplitude tailoring of each pulse is used to flatten the burst profile, reducing the standard deviation in pulse energy over the 100 ms burst from 3.7% to 2.1% with a burst-to-burst standard deviation of 0.8%.
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36
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Michael JB, Venkateswaran P, Miller JD, Slipchenko MN, Gord JR, Roy S, Meyer TR. 100 kHz thousand-frame burst-mode planar imaging in turbulent flames. Opt Lett 2014; 39:739-742. [PMID: 24562194 DOI: 10.1364/ol.39.000739] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
High-repetition-rate, burst-mode lasers can achieve higher energies per pulse compared with continuously pulsed systems, but the relatively few number of laser pulses in each burst has limited the temporal dynamic range of measurements in unsteady flames. A fivefold increase in the range of timescales that can be resolved by burst-mode laser-based imaging systems is reported in this work by extending a hybrid diode- and flashlamp-pumped Nd:YAG-based amplifier system to nearly 1000 pulses at 100 kHz during a 10 ms burst. This enables an unprecedented burst-mode temporal dynamic range to capture turbulent fluctuations from 0.1 to 50 kHz in flames of practical interest. High pulse intensity enables efficient conversion to the ultraviolet for planar laser-induced fluorescence imaging of nascent formaldehyde and other potential flame radicals.
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Stauffer HU, Miller JD, Slipchenko MN, Meyer TR, Prince BD, Roy S, Gord JR. Time- and frequency-dependent model of time-resolved coherent anti-Stokes Raman scattering (CARS) with a picosecond-duration probe pulse. J Chem Phys 2014; 140:024316. [DOI: 10.1063/1.4860475] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
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Rand TG, Robbins C, Rajaraman D, Sun M, Miller JD. Induction of Dectin-1 and asthma-associated signal transduction pathways in RAW 264.7 cells by a triple-helical (1, 3)-β-D glucan, curdlan. Arch Toxicol 2013; 87:1841-50. [PMID: 23543010 DOI: 10.1007/s00204-013-1042-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2013] [Accepted: 03/08/2013] [Indexed: 11/25/2022]
Abstract
People living in damp buildings are typically exposed to spore and mycelial fragments of the fungi that grow on damp building materials. There is experimental evidence that this exposure to triple-helical (1, 3)-β-D glucan and low molecular weight toxins may be associated with non-atopic asthma observed in damp and moldy buildings. However, the mechanisms underlying this response are only partially resolved. Using the pure (1, 3)-β-D glucan, curdlan, and the murine macrophage cell line, RAW 264.7, there were two objectives of this study. The first was to determine whether signal transduction pathways activating asthma-associated cell signaling pathways were stimulated using mouse transduction Pathway Finder(®) arrays and quantitative real-time (QRT) PCR. The second objective was to evaluate the dose and temporal responses associated with transcriptional changes in asthma-associated cytokines, the signal transduction receptor gene Dectin-1, and various transcription factor genes related to the induction of asthma using customized RT-PCR-based arrays. Compared to controls, the 10(-7) M curdlan treatment induced significant changes in gene transcription predominately in the NFkB, TGF-β, p53, JAK/STAT, P13/AKT, phospholipase C, and stress signaling pathways. The 10(-8) M curdlan treatment mainly induced NFkB and TGF-β pathways. Compared to controls, curdlan exposures also induced significant dose- and time-dependent changes in the gene translations. We found that that curdlan as a non-allergenic potentiator modulates a network of transduction signaling pathways not only associated with TH-1, TH-2, and TH-3 cell responses including asthma potentiation, but a variety of other cell responses in RAW 264.7 cells. These results help provide mechanistic basis for some of the phenotypic changes associated with asthma that have been observed in in vitro, in vivo, and human studies and open up a hypothesis-building process that could explain the rise of non-atopic asthma associated with fungi.
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Affiliation(s)
- Thomas G Rand
- Department of Biology, Saint Mary's University, 923 Robie St, Halifax, NS, B3H 3C3, Canada,
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Slipchenko MN, Moody CE, Miller JD, Roy S, Gord JR, Meyer TR. Micro-Optical Initiation of Nanoenergetic Materials Using a Temporally Tailored Variable-Pulse-Width Laser. J Nanotechnol Eng Med 2013. [DOI: 10.1115/1.4007887] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Nanoenergetic materials can provide a significant enhancement in the rate of energy release as compared with microscale materials. The energy-release rate is strongly dependent not only on the primary particle size but also on the level of agglomeration, which is of particular interest for the inclusion of nanoenergetics in practical systems where agglomeration is desired or difficult to avoid. Unlike studies of nanoparticles or nanometer-size aggregates, which can be conducted with ultrafast or nanosecond lasers assuming uniform heating, microscale aggregates of nanoparticles are more sensitive to the thermophysical time scale of the heating process. To allow control over the rate of energy deposition during laser initiation studies, a custom, temporally tailored, continuously variable-pulse-width (VPW) laser was employed for radiative heating of nanoenergetic materials. The laser consisted of a continuous-wave master oscillator, which could be sliced into desired pulses, and a chain of amplifiers to reach high peak power. The slicer allowed control over the time profile of the pulses via the combination of an arbitrary waveform generator and acousto-optic modulator (AOM). The effects of utilizing flat-top or ramped laser pulses with durations from 100 ns to 150 μs and energies up to 20 mJ at 1064 nm were investigated, along with a broad range of heating rates for single particles or nanoparticle aggregates up to 100-μm diameter. In combination with an optical microscope, laser heating of aggregates consisting of 70-nm diameter Al nanoparticles in a Teflon matrix showed significant dependence on the heating profile due to the sensitivity of nanoenergetic materials to heating rate. The ability to control the temporal pulse-intensity profile leads to greater control over the effects of ablative heating and the resulting shockwave propagation. Hence, flexible laser-pulse profiles allow the investigation of energetic properties for a wide size range of metal/metal-oxide nanoparticles, aggregates, and composites.
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Affiliation(s)
- Mikhail N. Slipchenko
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN 47907; Spectral Energies, LLC, Dayton, OH 45431
| | | | - Joseph D. Miller
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011
| | - Sukesh Roy
- Spectral Energies, LLC, Dayton, OH 45431
| | - James R. Gord
- Air Force Research Laboratory, Wright-Patterson Air Force Base, OH 45433
| | - Terrence R. Meyer
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011 e-mail:
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Slipchenko MN, Miller JD, Roy S, Gord JR, Meyer TR. All-diode-pumped quasi-continuous burst-mode laser for extended high-speed planar imaging. Opt Express 2013; 21:681-689. [PMID: 23388961 DOI: 10.1364/oe.21.000681] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
An all-diode-pumped, multistage Nd:YAG amplifier is investigated as a means of extending the duration of high-power, burst-mode laser pulse sequences to an unprecedented 30 ms or more. The laser generates 120 mJ per pulse at 1064.3 nm with a repetition rate of 10 kHz, which is sufficient for a wide range of planar laser diagnostics based on fluorescence, Raman scattering, and Rayleigh scattering, among others. The utility of the technique is evaluated for image sequences of formaldehyde fluorescence in a lifted methane-air diffusion flame. The advantages and limitations of diode pumping are discussed, along with long-pulse diode-bar performance characteristics to guide future designs.
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Pang RD, Holschneider DP, Miller JD. Circadian rhythmicity in serotonin transporter knockout mice. Life Sci 2012; 91:365-368. [PMID: 22884802 DOI: 10.1016/j.lfs.2012.07.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2012] [Revised: 06/25/2012] [Accepted: 07/16/2012] [Indexed: 10/28/2022]
Abstract
AIMS Serotonin transporter knockout (5-HTT KO) mice exhibit elevated basal extracellular serotonin, increased depressive-like behaviors and increased rapid eye movement sleep. Because abnormalities of circadian rhythms are associated with mood disorders, we tested the hypothesis that 5-HTT KO mice would have altered circadian rhythmicity. MAIN METHODS Homecage locomotor activity was recorded in wild-type (WT) and KO mice under a standard 12:12 light-dark cycle. After 4weeks of recording, mice received a one-hour light pulse at circadian time (CT) 14 and then were kept under constant darkness for 3weeks. KEY FINDINGS There were no significant differences in amplitude, period, acrophase or total home cage locomotor activity between WT and KO mice during the 12:12 light-dark cycle or during constant darkness. The mean phase delay to a CT 14 light pulse was significantly attenuated in KO compared to WT mice. SIGNIFICANCE Acute increases in serotonin have been reported to attenuate photic phase shifts. The current study demonstrates that this effect is maintained in the face of a lifelong absence of 5-HTT.
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Affiliation(s)
- Raina D Pang
- Graduate Program in Neuroscience, University of Southern California, United States.
| | - Daniel P Holschneider
- Graduate Program in Neuroscience, University of Southern California, United States; Department of Psychiatry and Behavioral Science, University of Southern California, United States; Department of Neurology, University of Southern California, United States; Department of Biomedical Engineering, University of Southern California, United States; Department of Cell and Neurobiology, University of Southern California, United States
| | - Joseph D Miller
- Department of Cell and Neurobiology, University of Southern California, United States
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Abstract
Fully mature enamel is about 98% mineral by weight. While mineral crystals appear very early during its formative phase, the newly secreted enamel is a soft gel-like matrix containing several enamel matrix proteins of which the most abundant is amelogenin (Amelx). Histological analysis of mineralized dental enamel reveals markings called cross-striations associated with daily increments of enamel formation, as evidenced by injections of labeling dyes at known time intervals. The daily incremental growth of enamel has led to the hypothesis that the circadian clock might be involved in the regulation of enamel development. To identify daily rhythms of clock genes and Amelx, we subjected murine ameloblast cells to serum synchronization to analyze the expression of the circadian transcription factors Per2 and Bmal1 by real-time PCR. Results indicate that these key genetic regulators of the circadian clock are expressed in synchronized murine ameloblast cell cultures and that their expression profile follows a circadian pattern with acrophase and bathyphase for both gene transcripts in antiphase. Immunohistological analysis confirms the protein expression of Bmal and Cry in enamel cells. Amelx expression in 2-day postnatal mouse molars dissected every 4 hours for a duration of 48 hours oscillated with an approximately 24-hour period, with a significant approximately 2-fold decrease in expression during the dark period compared to the light period. The expression of genes involved in bicarbonate production (Car2) and transport (Slc4a4), as well as in enamel matrix endocytosis (Lamp1), was greater during the dark period, indicating that ameloblasts express these proteins when Amelx expression is at the nadir. The human and mouse Amelx genes each contain a single nonconserved E-box element within 10 kb upstream of their respective transcription start sites. We also found that within 2 kb of the transcription start site of the human NFYA gene, which encodes a positive regulator of amelogenin, there is an E-box element that is conserved in rodents and other mammals. Moreover, we found that Nfya expression in serum-synchronized murine ameloblasts oscillated with a strong 24-hour rhythm. Taken together, our data support the hypothesis that the circadian clock temporally regulates enamel development.
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Affiliation(s)
- Rodrigo S Lacruz
- Center for Craniofacial Molecular Biology, Ostrow School of Dentistry, University of Southern California, Los Angeles, CA 90033, USA.
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Abulseoud OA, Miller JD, Wu J, Choi DS, Holschneider DP. Ceftriaxone upregulates the glutamate transporter in medial prefrontal cortex and blocks reinstatement of methamphetamine seeking in a condition place preference paradigm. Brain Res 2012; 1456:14-21. [PMID: 22521042 PMCID: PMC3922613 DOI: 10.1016/j.brainres.2012.03.045] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2011] [Revised: 02/27/2012] [Accepted: 03/20/2012] [Indexed: 01/20/2023]
Abstract
Glutamate signaling plays an essential role in drug-seeking behavior. Using reinstatement of conditioned place preference (CPP), we determined whether ceftriaxone, a β-lactam antibiotic known to increase the expression and activity of the glutamate transporter (EAAT₂) on glial cells, blocks methamphetamine-triggered reinstatement of CPP. Rats acquired methamphetamine CPP following 7 consecutive days of conditioning, during which each animal received pairings of alternating morning methamphetamine (2.5 mg/kg, IP) and afternoon saline (IP). Animals showing CPP were successfully extinguished with repeated twice daily saline administration over a 7-day period. Ceftriaxone (200 mg/kg, IP) was administered (vs. saline) once a day for 7 days during the extinction period. Upon successful extinction, animals received a single dose of methamphetamine (2.5 mg/kg, IP) for reinstatement and were tested for CPP one day later. Using real time PCR, EAAT₂ mRNA levels in the nucleus accumbens (NAc) and medial prefrontal cortex (mPFC) were quantified in response to ceftriaxone. Ceftriaxone blocked methamphetamine-triggered reinstatement of CPP and significantly increased EAAT₂ mRNA levels in the mPFC, with a trend towards significance in the NAc. In conclusion, Ceftriaxone modulated the expression of the glutamate transporter in a critical region of the cortico-striatal addiction circuitry and attenuated drug-seeking behavior in rats. Further research is needed to test the efficacy of compounds targeting the EAAT₂ in human methamphetamine-dependent users.
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Affiliation(s)
- Osama A Abulseoud
- Department of Psychiatry and Behavioral Science, University of Southern California, Los Angeles, CA, USA.
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Isaac-Renton JL, Chang Y, Prystajecky N, Petric M, Mak A, Abbott B, Paris B, Decker KC, Pittenger L, Guercio S, Stott J, Miller JD. Use of Lean response to improve pandemic influenza surge in public health laboratories. Emerg Infect Dis 2012; 18:57-62. [PMID: 22257385 PMCID: PMC3310080 DOI: 10.3201/eid1801.101485] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
These tools enabled laboratory response to the 10-fold increase in testing demands. A novel influenza A (H1N1) virus detected in April 2009 rapidly spread around the world. North American provincial and state laboratories have well-defined roles and responsibilities, including providing accurate, timely test results for patients and information for regional public health and other decision makers. We used the multidisciplinary response and rapid implementation of process changes based on Lean methods at the provincial public health laboratory in British Columbia, Canada, to improve laboratory surge capacity in the 2009 influenza pandemic. Observed and computer simulating evaluation results from rapid processes changes showed that use of Lean tools successfully expanded surge capacity, which enabled response to the 10-fold increase in testing demands.
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Affiliation(s)
- Judith L Isaac-Renton
- Public Health Microbiology and Reference Laboratory, Provincial Health Services Authority, 655 West 12th Ave, Vancouver, BC V5Z 4R4, Canada.
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Miller JD, Engel SR, Tröger JW, Meyer TR, Seeger T, Leipertz A. Characterization of a CH planar laser-induced fluorescence imaging system using a kHz-rate multimode-pumped optical parametric oscillator. Appl Opt 2012; 51:2589-2600. [PMID: 22614478 DOI: 10.1364/ao.51.002589] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2011] [Accepted: 02/06/2012] [Indexed: 06/01/2023]
Abstract
The performance characteristics of a new CH planar laser-induced fluorescence (PLIF) imaging system composed of a kHz-rate multimode-pumped optical parametric oscillator (OPO) and high-speed intensified CMOS camera are investigated in laminar and turbulent CH4-H2-air flames. A multi-channel Nd:YAG cluster that produces up to 225 mJ at 355 nm with multiple-pulse spacing of 100 μs (corresponding to 10 kHz) is used to pump an OPO to produce up to 6 mJ at 431 nm for direct excitation of the A-X (0, 0) band of the CH radical. Single-shot signal-to-noise ratios of 82:1 and 7.5:1 are recorded in laminar premixed flames relative to noise in the background and within the flame layer, respectively. The spatial resolution and image quality are sufficient to accurately measure the CH layer thickness of ~0.4 mm while imaging the detailed evolution of turbulent flame structures over a 20 mm span. Background interferences due to polycyclic-aromatic hydrocarbons and Rayleigh scattering are minimized and, along with signal linearity, allow semi-quantitative analysis of CH signals on a shot-to-shot basis. The effects of design features, such as cavity finesse and passive injection seeding, on conversion efficiency, stability, and linewidth of the OPO output are also discussed.
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Affiliation(s)
- Joseph D Miller
- Department of Mechanical Engineering, Iowa State University, Ames, Iowa 50011, USA
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Slipchenko MN, Miller JD, Roy S, Gord JR, Danczyk SA, Meyer TR. Quasi-continuous burst-mode laser for high-speed planar imaging. Opt Lett 2012; 37:1346-1348. [PMID: 22513681 DOI: 10.1364/ol.37.001346] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The pulse-burst duration of a compact burst-mode Nd:YAG laser is extended by one order of magnitude compared to previous flashlamp-pumped designs by incorporating a fiber oscillator and diode-pumped solid-state amplifiers. The laser has a linewidth of <2 GHz at 1064.3 nm with 150 mJ per individual pulse at 10 kHz. The performance of the system is evaluated by using the third-harmonic output at 354.8 nm for high-speed planar laser-induced fluorescence of formaldehyde in a lifted methane-air diffusion flame. A total of 100 and 200 sequential images of unsteady fluid-flame interactions are acquired at repetition rates of 10 kHz and 20 kHz, respectively.
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Stauffer HU, Miller JD, Roy S, Gord JR, Meyer TR. Communication: Hybrid femtosecond/picosecond rotational coherent anti-Stokes Raman scattering thermometry using a narrowband time-asymmetric probe pulse. J Chem Phys 2012; 136:111101. [DOI: 10.1063/1.3693669] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Hans U. Stauffer
- Spectral Energies, LLC, 5100 Springfield St., Suite 301, Dayton, Ohio 45431, USA
| | - Joseph D. Miller
- Department of Mechanical Engineering, Iowa State University, Ames, Iowa 50011, USA
| | - Sukesh Roy
- Spectral Energies, LLC, 5100 Springfield St., Suite 301, Dayton, Ohio 45431, USA
| | - James R. Gord
- Air Force Research Laboratory, Propulsion Directorate, Wright-Patterson AFB, Ohio 45433, USA
| | - Terrence R. Meyer
- Department of Mechanical Engineering, Iowa State University, Ames, Iowa 50011, USA
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Miller JD, Dedic CE, Roy S, Gord JR, Meyer TR. Interference-free gas-phase thermometry at elevated pressure using hybrid femtosecond/picosecond rotational coherent anti-Stokes Raman scattering. Opt Express 2012; 20:5003-5010. [PMID: 22418304 DOI: 10.1364/oe.20.005003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Rotational-level-dependent dephasing rates and nonresonant background can lead to significant uncertainties in coherent anti-Stokes Raman scattering (CARS) thermometry under high-pressure, low-temperature conditions if the gas composition is unknown. Hybrid femtosecond/picosecond rotational CARS is employed to minimize or eliminate the influence of collisions and nonresonant background for accurate, frequency-domain thermometry at elevated pressure. The ability to ignore these interferences and achieve thermometric errors of <5% is demonstrated for N2 and O2 at pressures up to 15 atm. Beyond 15 atm, the effects of collisions cannot be ignored but can be minimized using a short probe delay (~6.5 ps) after Raman excitation, thereby improving thermometric accuracy with a time- and frequency-resolved theoretical model.
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Affiliation(s)
- Joseph D Miller
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA
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Basile LA, Ellefson D, Gluzman-Poltorak Z, Junes-Gill K, Mar V, Mendonca S, Miller JD, Tom J, Trinh A, Gallaher TK. HemaMax™, a recombinant human interleukin-12, is a potent mitigator of acute radiation injury in mice and non-human primates. PLoS One 2012; 7:e30434. [PMID: 22383962 PMCID: PMC3286478 DOI: 10.1371/journal.pone.0030434] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2011] [Accepted: 12/18/2011] [Indexed: 01/10/2023] Open
Abstract
HemaMax, a recombinant human interleukin-12 (IL-12), is under development to address an unmet medical need for effective treatments against acute radiation syndrome due to radiological terrorism or accident when administered at least 24 hours after radiation exposure. This study investigated pharmacokinetics, pharmacodynamics, and efficacy of m-HemaMax (recombinant murine IL-12), and HemaMax to increase survival after total body irradiation (TBI) in mice and rhesus monkeys, respectively, with no supportive care. In mice, m-HemaMax at an optimal 20 ng/mouse dose significantly increased percent survival and survival time when administered 24 hours after TBI between 8–9 Gy (p<0.05 Pearson's chi-square test). This survival benefit was accompanied by increases in plasma interferon-γ (IFN-γ) and erythropoietin levels, recovery of femoral bone hematopoiesis characterized with the presence of IL-12 receptor β2 subunit–expressing myeloid progenitors, megakaryocytes, and osteoblasts. Mitigation of jejunal radiation damage was also examined. At allometrically equivalent doses, HemaMax showed similar pharmacokinetics in rhesus monkeys compared to m-HemaMax in mice, but more robustly increased plasma IFN-γ levels. HemaMax also increased plasma erythropoietin, IL-15, IL-18, and neopterin levels. At non-human primate doses pharmacologically equivalent to murine doses, HemaMax (100 ng/Kg and 250 ng/Kg) administered at 24 hours after TBI (6.7 Gy/LD50/30) significantly increased percent survival of HemaMax groups compared to vehicle (p<0.05 Pearson's chi-square test). This survival benefit was accompanied by a significantly higher leukocyte (neutrophils and lymphocytes), thrombocyte, and reticulocyte counts during nadir (days 12–14) and significantly less weight loss at day 12 compared to vehicle. These findings indicate successful interspecies dose conversion and provide proof of concept that HemaMax increases survival in irradiated rhesus monkeys by promoting hematopoiesis and recovery of immune functions and possibly gastrointestinal functions, likely through a network of interactions involving dendritic cells, osteoblasts, and soluble factors such as IL-12, IFN-γ, and cytoprotectant erythropoietin.
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Affiliation(s)
- Lena A Basile
- Neumedicines, Inc, Pasadena, California, United States of America.
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Miller JD, Skinner CN, Safford HD, Knapp EE, Ramirez CM. Trends and causes of severity, size, and number of fires in northwestern California, USA. Ecol Appl 2012; 22:184-203. [PMID: 22471083 DOI: 10.1890/10-2108.1] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Research in the last several years has indicated that fire size and frequency are on the rise in western U.S. forests. Although fire size and frequency are important, they do not necessarily scale with ecosystem effects of fire, as different ecosystems have different ecological and evolutionary relationships with fire. Our study assessed trends and patterns in fire size and frequency from 1910 to 2008 (all fires > 40 ha), and the percentage of high-severity in fires from 1987 to 2008 (all fires > 400 ha) on the four national forests of northwestern California. During 1910-2008, mean and maximum fire size and total annual area burned increased, but we found no temporal trend in the percentage of high-severity fire during 1987-2008. The time series of severity data was strongly influenced by four years with region-wide lightning events that burned huge areas at primarily low-moderate severity. Regional fire rotation reached a high of 974 years in 1984 and fell to 95 years by 2008. The percentage of high-severity fire in conifer-dominated forests was generally higher in areas dominated by smaller-diameter trees than in areas with larger-diameter trees. For Douglas-fir forests, the percentage of high-severity fire did not differ significantly between areas that re-burned and areas that only burned once (10% vs. 9%) when re-burned within 30 years. Percentage of high-severity fire decreased to 5% when intervals between first and second fires were > 30 years. In contrast, in both mixed-conifer and fir/high-elevation conifer forests, the percentage of high-severity fire was less when re-burned within 30 years compared to first-time burned (12% vs. 16% for mixed conifer; 11% vs. 19% for fir/high-elevation conifer). Additionally, the percentage of high-severity fire did not differ whether the re-burn interval was less than or greater than 30 years. Years with larger fires and greatest area burned were produced by region-wide lightning events, and characterized by less winter and spring precipitation than years dominated by smaller human-ignited fires. Overall percentage of high-severity fire was generally less in years characterized by these region-wide lightning events. Our results suggest that, under certain conditions, wildfires could be more extensively used to achieve ecological and management objectives in northwestern California.
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Affiliation(s)
- J D Miller
- USDA Forest Service, Pacific Southwest Region, Fire and Aviation Management, 3237 Peacekeeper Way, Suite 101, McClellan, California 95652, USA.
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