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Kureshi N, Abidi SSR, Clarke DB, Zeng W, Feng C. Spatial Hotspots and Sociodemographic Profiles Associated With Traumatic Brain Injury in Nova Scotia. J Neurotrauma 2024; 41:844-861. [PMID: 38047531 DOI: 10.1089/neu.2023.0257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2023] Open
Abstract
Traumatic brain injury (TBI) is a leading cause of death and disability, primarily caused by falls and motor vehicle collisions (MVCs). Although many TBIs are preventable, there is a notable lack of studies exploring the association of geographically defined TBI hotspots with social deprivation. Geographic information systems (GIS) can be used to identify at-risk neighborhoods (hotspots) for targeted interventions. This study aims to determine the spatial distribution of TBI by major causes and to explore the sociodemographic and economic characteristics of TBI hotspots and cold spots in Nova Scotia. Patient data for TBIs from 2003 to 2019 were obtained from the Nova Scotia Trauma Registry. Residential postal codes were geocoded and assigned to dissemination areas (DA). Area-based risk factors and deprivation status (residential instability [RI], economic dependency [ED], ethnocultural composition [EC], and situational vulnerability [SV]) from the national census data were linked to DAs. Spatial autocorrelation was assessed using Moran's I, and hotspot analysis was performed using Getis-Ord Gi* statistic. Differences in risk factors between hot and cold spots were evaluated using the Mann-Whitney U test for numerical variables and the χ2 test or Fisher's exact test for categorical variables. A total of 5394 TBI patients were eligible for inclusion in the study. The distribution of hotspots for falls exhibited no significant difference between urban and rural areas (p = 0.71). Conversely, hotspots related to violence were predominantly urban (p = 0.001), whereas hotspots for MVCs were mostly rural (p < 0.001). Distinct dimensions of deprivation were associated with falls, MVCs, and violent hotspots. Fall hotspots were significantly associated with areas characterized by higher RI (p < 0.001) and greater ethnocultural diversity (p < 0.001). Conversely, the same domains exhibited an inverse relationship with MVC hotspots; areas with low RI and ethnic homogeneity displayed a higher proportion of MVC hotspots. ED and SV exhibited a strong gradient with MVC hotspots; the most deprived quintiles displayed the highest proportion of MVC hotspots compared with cold spots (ED; p = 0.002, SV; p < 0.001). Areas with the highest levels of ethnocultural diversity were found to have a significantly higher proportion of violence-related hotspots than cold spots (p = 0.005). This study offers two significant contributions to spatial epidemiology. First, it demonstrates the distribution of TBI hotspots by major injury causes using the smallest available geographical unit. Second, we disentangle the various pathways through which deprivation impacts the risk of main mechanisms of TBI. These findings provide valuable insights for public health officials to design targeted injury prevention strategies in high-risk areas.
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Affiliation(s)
- Nelofar Kureshi
- Division of Neurosurgery, Dalhousie University, Halifax, Nova Scotia, Canada
| | | | - David B Clarke
- Division of Neurosurgery, Dalhousie University, Halifax, Nova Scotia, Canada
- Brain Repair Centre, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Weiping Zeng
- Super GeoAI Technology Inc. Saskatoon, Saskatchewan, Canada
| | - Cindy Feng
- Department of Community Health and Epidemiology, Dalhousie University, Halifax, Nova Scotia, Canada
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Majouni S, Tennankore K, Abidi SSR. Predicting Urgent Dialysis at Ambulance Transport to the Emergency Department Using Machine Learning Methods. Stud Health Technol Inform 2024; 310:891-895. [PMID: 38269937 DOI: 10.3233/shti231093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Hemodialysis patients frequently require ambulance transport to the hospital for dialysis. Some patients require urgent dialysis (UD) within 24 hours of transport to hospital to avoid morbidity and mortality. UD is not available in all hospitals; therefore, predicting patients who need UD prior to hospital transport can help paramedics with destination planning. In this paper, we developed machine learning models for paramedics to predict whether a patient needs UD based on patient characteristics available at the time of ambulance transport. This paper presented a study based on ambulance data collected in Halifax, Canada. Given that relatively few patients need UD, a class imbalance problem is addressed by up-sampling methods and prediction models are developed using multiple machine learning methods. The achieved prediction scores are F1-score=0.76, sensitivity=0.76, and specificity=0.97, confirming that models can predict UD with limited patient characteristics.
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Affiliation(s)
- Sheida Majouni
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
| | - Karthik Tennankore
- Division of Nephrology, Department of Medicine, Dalhousie University, Canada
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3
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Abidi SHR, Zincir-Heywood N, Abidi SSR, Jalakam K, Abidi S, Gunaratnam L, Suri R, Cardinale H, Vinson A, Prasad B, Walsh M, Yohanna S, Worthen G, Tennankore K. Characterizing Cluster-Based Frailty Phenotypes in a Multicenter Prospective Cohort of Kidney Transplant Candidates. Stud Health Technol Inform 2024; 310:896-900. [PMID: 38269938 DOI: 10.3233/shti231094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Frailty is associated with a higher risk of death among kidney transplant candidates. Currently available frailty indices are often based on clinical impression, physical exam or an accumulation of deficits across domains of health. In this paper we investigate a clustering based approach that partitions the data based on similarities between individuals to generate phenotypes of kidney transplant candidates. We analyzed a multicenter cohort that included several features typically used to determine an individual's level of frailty. We present a clustering based phenotyping approach, where we investigated two clustering approaches-i.e. neural network based Self-Organizing Maps (SOM) with hierarchical clustering, and KAMILA (KAy-means for MIxed LArge data sets). Our clustering results partition the individuals across 3 distinct clusters. Clusters were used to generate and study feature-level phenotypes of each group.
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Affiliation(s)
| | | | | | - Kranthi Jalakam
- Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - Samina Abidi
- Dept. of Community Health & Epidemiology, Dalhousie University, Halifax, Canada
| | - Lakshman Gunaratnam
- Division of Nephrology, London Health Sciences Center, London, Ontario, Canada
| | - Rita Suri
- Faculty of Medicine, McGill University, Montreal, Quebec, Canada
| | - Héloïse Cardinale
- Division of Nephrology, Centre de Recherche du CHUM, Montreal, Quebec, Canada
| | - Amanda Vinson
- Division of Nephrology, Dept. of Medicine, Dalhousie University, Halifax, Canada
| | - Bhanu Prasad
- Division of Nephrology, Regina General Hospital, Regina, Saskatchewan, Canada
| | - Michael Walsh
- Division of Nephrology, McMaster University, Hamilton, Ontario, Canada
| | - Seychelle Yohanna
- Division of Nephrology, McMaster University, Hamilton, Ontario, Canada
| | - George Worthen
- Division of Nephrology, Dept. of Medicine, Dalhousie University, Halifax, Canada
| | - Karthik Tennankore
- Division of Nephrology, Dept. of Medicine, Dalhousie University, Halifax, Canada
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Abidi SR, Rickards T, Van Woensel W, Abidi SSR. Digital Therapeutics for COPD Patient Self-Management: Needs Analysis and Design Study. Stud Health Technol Inform 2024; 310:209-213. [PMID: 38269795 DOI: 10.3233/shti230957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
Timely management of Chronic Obstructive Pulmonary Disease (COPD) exacerbations can improve recovery and reduce the risk of hospitalization. Digital therapeutics are digital interventions, based on best evidence, designed to provide home-based, patient-centered and pervasive self-management support to patients. Digital therapeutics can be effectively used to offer personalized and explainable self-management and behaviour modification resources to patients to reduce the burden of COPD, especially the prevention of acute COPD exacerbations. The functionalities of COPD specific digital therapeutics for self-management need to be grounded in clinical evidence and behavioral theories, in keeping with the self-management needs of COPD patients and their care providers. In this paper, we report the functionalities of a COPD digital therapeutic mobile application based on a needs analysis qualitative study involving both COPD patients and physicians, and, based on the study's finding, we present a knowledge-driven digital therapeutic for COPD self-management.
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Affiliation(s)
- Samina Raza Abidi
- Dept. of Community Health and Epidemiology, Dalhousie University, Canada
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5
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Abidi SSR, Jalakam K, Abidi SHR, Tennankore K. Ensemble Clustering to Generate Phenotypes of Kidney Transplant Donors and Recipients. Stud Health Technol Inform 2024; 310:1031-1035. [PMID: 38269971 DOI: 10.3233/shti231121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2024]
Abstract
In this paper we investigate the generation of phenotypes for kidney transplant donors and recipients to assist with decision making around organ allocation. We present an ensemble clustering approach for multi-type data (numerical and categorical) using two different clustering approaches-i.e., model based and vector quantization based clustering. These clustering approaches were applied to a large, US national deceased donor kidney transplant recipient database to characterize members of each cluster (in an unsupervised fashion) and to determine whether the subsequent risk of graft failure differed for each cluster. We generated three distinct clusters of recipients, which were subsequently used to generate phenotypes. Each cluster phenotype had recipients with varying clinical features, and the risk of kidney transplant graft failure and mortality differed across clusters. Importantly, the clustering results by both approaches demonstrated a significant overlap. Utilization of two distinct clustering approaches may be a novel way to validate unsupervised clustering techniques and clustering can be used for organ allocation decision making on the basis of differential outcomes.
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Affiliation(s)
| | - Kranthi Jalakam
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
| | | | - Karthik Tennankore
- Division of Nephrology, Dept. of Medicine, Dalhousie University, Halifax, Canada
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Eastwood KW, May R, Andreou P, Abidi S, Abidi SSR, Loubani OM. Needs and expectations for artificial intelligence in emergency medicine according to Canadian physicians. BMC Health Serv Res 2023; 23:798. [PMID: 37491228 PMCID: PMC10369807 DOI: 10.1186/s12913-023-09740-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 06/22/2023] [Indexed: 07/27/2023] Open
Abstract
BACKGROUND Artificial Intelligence (AI) is recognized by emergency physicians (EPs) as an important technology that will affect clinical practice. Several AI-tools have already been developed to aid care delivery in emergency medicine (EM). However, many EM tools appear to have been developed without a cross-disciplinary needs assessment, making it difficult to understand their broader importance to general-practice. Clinician surveys about AI tools have been conducted within other medical specialties to help guide future design. This study aims to understand the needs of Canadian EPs for the apt use of AI-based tools. METHODS A national cross-sectional, two-stage, mixed-method electronic survey of Canadian EPs was conducted from January-May 2022. The survey includes demographic and physician practice-pattern data, clinicians' current use and perceptions of AI, and individual rankings of which EM work-activities most benefit from AI. RESULTS The primary outcome is a ranked list of high-priority AI-tools for EM that physicians want translated into general use within the next 10 years. When ranking specific AI examples, 'automated charting/report generation', 'clinical prediction rules' and 'monitoring vitals with early-warning detection' were the top items. When ranking by physician work-activities, 'AI-tools for documentation', 'AI-tools for computer use' and 'AI-tools for triaging patients' were the top items. For secondary outcomes, EPs indicated AI was 'likely' (43.1%) or 'extremely likely' (43.7%) to be able to complete the task of 'documentation' and indicated either 'a-great-deal' (32.8%) or 'quite-a-bit' (39.7%) of potential for AI in EM. Further, EPs were either 'strongly' (48.5%) or 'somewhat' (39.8%) interested in AI for EM. CONCLUSIONS Physician input on the design of AI is essential to ensure the uptake of this technology. Translation of AI-tools to facilitate documentation is considered a high-priority, and respondents had high confidence that AI could facilitate this task. This study will guide future directions regarding the use of AI for EM and help direct efforts to address prevailing technology-translation barriers such as access to high-quality application-specific data and developing reporting guidelines for specific AI-applications. With a prioritized list of high-need AI applications, decision-makers can develop focused strategies to address these larger obstacles.
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Affiliation(s)
- Kyle W Eastwood
- Department of Emergency Medicine, Dalhousie University, 1796 Summer Street, Halifax Infirmary, 4Th Floor Emergency Department Administration Office, Halifax, NS, B3H 2Y9, Canada.
| | - Ronald May
- Department of Emergency Medicine, Dalhousie University, 1796 Summer Street, Halifax Infirmary, 4Th Floor Emergency Department Administration Office, Halifax, NS, B3H 2Y9, Canada
| | - Pantelis Andreou
- Department of Community Health and Epidemiology, Dalhousie University, Halifax, Canada
| | - Samina Abidi
- Department of Community Health and Epidemiology, Dalhousie University, Halifax, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Osama M Loubani
- Department of Emergency Medicine, Dalhousie University, 1796 Summer Street, Halifax Infirmary, 4Th Floor Emergency Department Administration Office, Halifax, NS, B3H 2Y9, Canada
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7
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Raza Abidi SS, Naqvi A, Worthen G, Vinson A, Abidi S, Kiberd B, Skinner T, West K, Tennankore KK. Multiview Clustering to Identify Novel Kidney Donor Phenotypes for Assessing Graft Survival in Older Transplant Recipients. Kidney360 2023; 4:951-961. [PMID: 37291713 PMCID: PMC10371275 DOI: 10.34067/kid.0000000000000190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Accepted: 05/08/2023] [Indexed: 06/10/2023]
Abstract
Key Points An unsupervised machine learning clustering algorithm identified distinct deceased kidney donor phenotypes among older recipients. Recipients of certain donor phenotypes were at a relatively higher risk of all-cause graft loss even after accounting for recipient factors. The use of unsupervised clustering to support kidney allocation systems may be an important area for future study. Background Older transplant recipients are at a relatively increased risk of graft failure after transplantation, and some of this risk may relate to donor characteristics. Unsupervised clustering using machine learning may be a novel approach to identify donor phenotypes that may then be used to evaluate outcomes for older recipients. Using a cohort of older recipients, the purpose of this study was to (1 ) use unsupervised clustering to identify donor phenotypes and (2 ) determine the risk of death/graft failure for recipients of each donor phenotype. Methods We analyzed a nationally representative cohort of kidney transplant recipients aged 65 years or older captured using the Scientific Registry of Transplant Recipients between 2000 and 2017. Unsupervised clustering was used to generate phenotypes using donor characteristics inclusive of variables in the kidney donor risk index (KDRI). Cluster assignment was internally validated. Outcomes included all-cause graft failure (including mortality) and delayed graft function. Differences in the distribution of KDRI scores were also compared across the clusters. All-cause graft failure was compared for recipients of donor kidneys from each cluster using a multivariable Cox survival analysis. Results Overall, 23,558 donors were separated into five clusters. The area under the curve for internal validation of cluster assignment was 0.89. Recipients of donor kidneys from two clusters were found to be at high risk of all-cause graft failure relative to the lowest risk cluster (adjusted hazards ratio, 1.86; 95% confidence interval, 1.69 to 2.05 and 1.73; 95% confidence interval, 1.61 to 1.87). Only one of these high-risk clusters had high proportions of donors with established risk factors (i.e. , hypertension, diabetes). KDRI scores were similar for the highest and lowest risk clusters (1.40 [1.18–1.67] and 1.37 [1.15–1.65], respectively). Conclusions Unsupervised clustering can identify novel donor phenotypes comprising established donor characteristics that, in turn, may be associated with different risks of graft loss for older transplant recipients.
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Affiliation(s)
- Syed Sibte Raza Abidi
- Division of Nephrology, Department of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
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8
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Van Woensel W, Tu SW, Michalowski W, Sibte Raza Abidi S, Abidi S, Alonso JR, Bottrighi A, Carrier M, Edry R, Hochberg I, Rao M, Kingwell S, Kogan A, Marcos M, Martínez Salvador B, Michalowski M, Piovesan L, Riaño D, Terenziani P, Wilk S, Peleg M. A Community-of-Practice-based Evaluation Methodology for Knowledge Intensive Computational Methods and its Application to Multimorbidity Decision Support. J Biomed Inform 2023; 142:104395. [PMID: 37201618 DOI: 10.1016/j.jbi.2023.104395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Revised: 04/25/2023] [Accepted: 05/15/2023] [Indexed: 05/20/2023]
Abstract
OBJECTIVE The study has dual objectives. Our first objective (1) is to develop a community-of-practice-based evaluation methodology for knowledge-intensive computational methods. We target a whitebox analysis of the computational methods to gain insight on their functional features and inner workings. In more detail, we aim to answer evaluation questions on (i) support offered by computational methods for functional features within the application domain; and (ii) in-depth characterizations of the underlying computational processes, models, data and knowledge of the computational methods. Our second objective (2) involves applying the evaluation methodology to answer questions (i) and (ii) for knowledge-intensive clinical decision support (CDS) methods, which operationalize clinical knowledge as computer interpretable guidelines (CIG); we focus on multimorbidity CIG-based clinical decision support (MGCDS) methods that target multimorbidity treatment plans. MATERIALS AND METHODS Our methodology directly involves the research community of practice in (a) identifying functional features within the application domain; (b) defining exemplar case studies covering these features; and (c) solving the case studies using their developed computational methods-research groups detail their solutions and functional feature support in solution reports. Next, the study authors (d) perform a qualitative analysis of the solution reports, identifying and characterizing common themes (or dimensions) among the computational methods. This methodology is well suited to perform whitebox analysis, as it directly involves the respective developers in studying inner workings and feature support of computational methods. Moreover, the established evaluation parameters (e.g., features, case studies, themes) constitute a re-usable benchmark framework, which can be used to evaluate new computational methods as they are developed. We applied our community-of-practice-based evaluation methodology on MGCDS methods. RESULTS Six research groups submitted comprehensive solution reports for the exemplar case studies. Solutions for two of these case studies were reported by all groups. We identified four evaluation dimensions: detection of adverse interactions, management strategy representation, implementation paradigms, and human-in-the-loop support.Based on our whitebox analysis, we present answers to the evaluation questions (i) and (ii) for MGCDS methods. DISCUSSION The proposed evaluation methodology includes features of illuminative and comparison-based approaches; focusing on understanding rather than judging/scoring or identifying gaps in current methods. It involves answering evaluation questions with direct involvement of the research community of practice, who participate in setting up evaluation parameters and solving exemplar case studies. Our methodology was successfully applied to evaluate six MGCDS knowledge-intensive computational methods. We established that, while the evaluated methods provide a multifaceted set of solutions with different benefits and drawbacks, no single MGCDS method currently provides a comprehensive solution for MGCDS. CONCLUSION We posit that our evaluation methodology, applied here to gain new insights into MGCDS, can be used to assess other types of knowledge-intensive computational methods and answer other types of evaluation questions. Our case studies can be accessed at our GitHub repository (https://github.com/william-vw/MGCDS).
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Affiliation(s)
| | - Samson W Tu
- Center for BioMedical Informatics Research, Stanford University, Stanford, CA, 94305, USA
| | | | | | - Samina Abidi
- Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | | | | | | | - Ruth Edry
- Bruce Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel; Rambam Medical Center, Haifa, Israel
| | - Irit Hochberg
- Bruce Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel; Rambam Medical Center, Haifa, Israel
| | - Malvika Rao
- Telfer School of Management, University of Ottawa, Ottawa, ON, Canada
| | | | - Alexandra Kogan
- Department of Information Systems, University of Haifa, Haifa, Israel, 3498838
| | - Mar Marcos
- Universitat Jaume I, Castelló de la Plana, Spain
| | | | | | - Luca Piovesan
- DISIT, Università del Piemonte Orientale, Alessandria, Italy
| | - David Riaño
- Universitat Rovira i Virgili, Tarragona, Spain; Institut d'Investigació Sanitària Pere Virgili, Tarragona, Spain
| | | | - Szymon Wilk
- Institute of Computing Science, Poznan University of Technology, Poznan, Poland
| | - Mor Peleg
- Department of Information Systems, University of Haifa, Haifa, Israel, 3498838
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Agyapong B, Chishimba C, Wei Y, da Luz Dias R, Eboreime E, Msidi E, Abidi SSR, Mutaka-Loongo M, Mwansa J, Orji R, Zulu JM, Agyapong VIO. Improving Mental Health Literacy and Reducing Psychological Problems Among Teachers in Zambia: Protocol for Implementation and Evaluation of a Wellness4Teachers Email Messaging Program. JMIR Res Protoc 2023; 12:e44370. [PMID: 36877571 PMCID: PMC10028515 DOI: 10.2196/44370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 01/02/2023] [Accepted: 01/17/2023] [Indexed: 03/07/2023] Open
Abstract
BACKGROUND Primary, basic, secondary, and high school teachers are constantly faced with increased work stressors that can result in psychological health challenges such as burnout, anxiety, and depression, and in some cases, physical health problems. It is presently unknown what the mental health literacy levels are or the prevalence and correlates of psychological issues among teachers in Zambia. It is also unknown if an email mental messaging program (Wellness4Teachers) would effectively reduce burnout and associated psychological problems and improve mental health literacy among teachers. OBJECTIVE The primary objectives of this study are to determine if daily supportive email messages plus weekly mental health literacy information delivered via email can help improve mental health literacy and reduce the prevalence of moderate to high stress symptoms, burnout, moderate to high anxiety symptoms, moderate to high depression symptoms, and low resilience among school teachers in Zambia. The secondary objectives of this study are to evaluate the baseline prevalence and correlates of moderate to high stress, burnout, moderate to high anxiety, moderate to high depression, and low resilience among school teachers in Zambia. METHODS This is a quantitative longitudinal and cross-sessional study. Data will be collected at the baseline (the onset of the program), 6 weeks, 3 months, 6 months (the program midpoint), and 12 months (the end point) using web-based surveys. Individual teachers will subscribe by accepting an invitation to do so from the Lusaka Apex Medical University organizational account on the ResilienceNHope web-based application. Data will be analyzed using SPSS version 25 with descriptive and inferential statistics. Outcome measures will be evaluated using standardized rating scales. RESULTS The Wellness4Teachers email program is expected to improve the participating teachers' mental health literacy and well-being. It is anticipated that the prevalence of stress, burnout, anxiety, depression, and low resilience among teachers in Zambia will be similar to those reported in other jurisdictions. In addition, it is expected that demographic, socioeconomic, and organizational factors, class size, and grade teaching will be associated with burnout and other psychological disorders among teachers, as indicated in the literature. Results are expected 2 years after the program's launch. CONCLUSIONS The Wellness4Teachers email program will provide essential insight into the prevalence and correlates of psychological problems among teachers in Zambia and the program's impact on subscribers' mental health literacy and well-being. The outcome of this study will help inform policy and decision-making regarding psychological interventions for teachers in Zambia. INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID) PRR1-10.2196/44370.
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Affiliation(s)
- Belinda Agyapong
- Department of Psychiatry, University of Alberta, Edmonton, AB, Canada
| | | | - Yifeng Wei
- Department of Psychiatry, University of Alberta, Edmonton, AB, Canada
| | - Raquel da Luz Dias
- Department of Psychiatry, Faculty of Medicine, Dalhousie University, Halifax, NS, Canada
| | - Ejemai Eboreime
- Department of Psychiatry, University of Alberta, Edmonton, AB, Canada
| | | | | | | | | | - Rita Orji
- Faculty of Computer Sciences, Dalhousie University, Halifax, NS, Canada
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Liwski R, Clarke G, Cheng C, Abidi SSR, Abidi SR, Quinn JG. Validation of a flow-cytometry-based red blood cell antigen phenotyping method. Vox Sang 2023; 118:207-216. [PMID: 36633967 DOI: 10.1111/vox.13401] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 12/21/2022] [Accepted: 12/30/2022] [Indexed: 01/13/2023]
Abstract
BACKGROUND AND OBJECTIVES Current manual and automated phenotyping methods are based on visual detection of the antigen-antibody interaction. This approach has several limitations including the use of large volumes of patient and reagent red blood cells (RBCs) and antisera to produce a visually detectable reaction. We sought to determine whether the flow cytometry could be developed and validated to perform RBC phenotyping to enable a high-throughput method of phenotyping using comparatively miniscule reagent volumes via fluorescence-based detection of antibody binding. MATERIALS AND METHODS RBC phenotyping by flow cytometry was performed using monoclonal direct typing antisera (human IgM): anti-C, -E, -c, -e, -K, -Jka , -Jkb and indirect typing antisera (human IgG): anti-k, -Fya , -Fyb , -S, -s that are commercially available and currently utilized in our blood transfusion services (BTS) for agglutination-based phenotyping assays. RESULTS Seventy samples were tested using both flow-cytometry-based-phenotyping and a manual tube standard agglutination assay. For all the antigens tested, 100% concordance was achieved. The flow-cytometry-based method used minimal reagent volume (0.5-1 μl per antigen) compared with the volumes required for manual tube standard agglutination (50 μl per antigen) CONCLUSION: This study demonstrates the successful validation of flow-cytometry-based RBC phenotyping. Flow cytometry offers many benefits compared to common conventional RBC phenotyping methods including high degrees of automation, quantitative assessment with automated interpretation of results and extremely low volumes of reagents. This method could be used for high-throughput, low-cost phenotyping for both blood suppliers and hospital BTS.
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Affiliation(s)
- Robert Liwski
- Department of Pathology and Laboratory Medicine, Dalhousie University, Halifax, Nova Scotia, Canada.,Nova Scotia Health Authority, Central Zone, Halifax, Nova Scotia, Canada
| | - Gwen Clarke
- Department of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada.,Canadian Blood Services, Edmonton, Alberta, Canada
| | - Calvino Cheng
- Department of Pathology and Laboratory Medicine, Dalhousie University, Halifax, Nova Scotia, Canada.,Nova Scotia Health Authority, Central Zone, Halifax, Nova Scotia, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Samina Raza Abidi
- Department of Community Health and Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Jason George Quinn
- Department of Pathology and Laboratory Medicine, Dalhousie University, Halifax, Nova Scotia, Canada.,Nova Scotia Health Authority, Central Zone, Halifax, Nova Scotia, Canada
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11
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Van Woensel W, Taylor B, Abidi SSR. Towards an Adaptive Clinical Transcription System for In-Situ Transcribing of Patient Encounter Information. Stud Health Technol Inform 2022; 290:158-162. [PMID: 35672991 DOI: 10.3233/shti220052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Electronic patient charts are essential for follow-up and multi-disciplinary care, but either take up an exorbitant amount of time during the patient encounter using a key-stroke entry system, or suffer from poor recall when made long after the encounter. Transcribing in-situ, natural dictations by the clinician, recorded during the encounter, with minimal workflow impact, is a promising solution. However, human transcription requires significant manual resources, whereas automated transcription currently lacks the accuracy for specialized clinical language. Our ultimate goal is to automate clinical transcription, particularly for Emergency Departments, with as an end-result a structured SOAP report. Towards this goal, we present the Adaptive Clinical Transcription System (ACTS). We compare the accuracy and processing times of state-of-the-art speech recognition tools, studying the feasibility of streaming-style dynamic transcription and opportunities of incremental learning.
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Affiliation(s)
- William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Brett Taylor
- IWK Children's Hospital, Halifax, Nova Scotia, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
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12
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Barrett M, Abidi SSR, Daowd A, Abidi S. A Knowledge Graph of Mechanistic Associations Between COVID-19, Diabetes Mellitus, and Chronic Kidney Disease. Stud Health Technol Inform 2022; 290:304-308. [PMID: 35673023 DOI: 10.3233/shti220084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
We present an automated knowledge synthesis and discovery framework to analyze published literature to identify and represent underlying mechanistic associations that aggravate chronic conditions due to COVID-19. Our literature-based discovery approach integrates text mining, knowledge graphs and medical ontologies to discover hidden and previously unknown pathophysiologic relations, dispersed across multiple public literature databases, between COVID-19 and chronic disease mechanisms. We applied our approach to discover mechanistic associations between COVID-19 and chronic conditions-i.e. diabetes mellitus and chronic kidney disease-to understand the long-term impact of COVID-19 on patients with chronic diseases. We found several gene-disease associations that could help identify mechanisms driving poor outcomes for COVID-19 patients with underlying conditions.
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Affiliation(s)
- Michael Barrett
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Ali Daowd
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Samina Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
- Department of Community Health and Epidemiology, Faculty of Medicine, Halifax, Nova Scotia, Canada
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13
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Rad J, Quinn JG, Cheng C, Liwski R, Abidi S, Abidi SSR. Using Interactive Visual Analytics to Optimize Blood Products Inventory at a Blood Bank. Stud Health Technol Inform 2022; 290:572-576. [PMID: 35673081 DOI: 10.3233/shti220142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Blood products and their derivatives are perishable commodities that require an efficient inventory management to ensure both a low wastage rate and a high product availability rate. To optimize blood product inventory, Blood Transfusion Services (BTS) need to reduce wastage by avoiding outdates and improving availability of different blood products. We took a blood product lifecycle approach and used advanced visualization techniques to design and develop a highly interactive web-based dashboard to audit retrospective data and consequently, to identify and learn from procedural inefficiencies based on analysis of transactional data. We present pertinent scenarios to show how the blood transfusion staff can use the dashboard to investigate blood product lifecycles so as to probe transition sequence patterns that led to wastage as a means to discover causes of procedural inefficiencies in the BTS.
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Affiliation(s)
- Jaber Rad
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Jason G Quinn
- Department of Pathology and Laboratory Medicine, Nova Scotia Health Authority, Halifax, Canada
| | - Calvino Cheng
- Department of Pathology and Laboratory Medicine, Nova Scotia Health Authority, Halifax, Canada
| | - Robert Liwski
- Department of Pathology and Laboratory Medicine, Nova Scotia Health Authority, Halifax, Canada
| | - Samina Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
- Department of Community Health and Epidemiology, Dalhousie University, Halifax, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
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14
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Majouni S, Kim JS, Sweeney E, Keltie E, Abidi SSR. Applying Machine Learning to Arsenic Species and Metallomics Profiles of Toenails to Evaluate Associations of Environmental Arsenic with Incident Cancer Cases. Stud Health Technol Inform 2022; 294:3-7. [PMID: 35612005 DOI: 10.3233/shti220385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Chronic exposure to environmental arsenic has been linked to a number of human diseases affecting multiple organ systems, including cancer. The greatest concern for chronic exposure to arsenic is contaminated groundwater used for drinking as it is the main contributor to the amount of arsenic present in the body. An estimated 40% of households in Nova Scotia (Canada) use water from private wells, and there is a concern that exposure to arsenic may be linked to/associated with cancer. In this preliminary study, we are aiming to gain insights into the association of environmental metal's pathogenicity and carcinogenicity with prostate cancer. We use toenails as a novel biomarker for capturing long-term exposure to arsenic, and have performed toxicological analysis to generate data about differential profiles of arsenic species and the metallome (entirety of metals) for both healthy and individuals with a history cancer. We have applied feature selection and machine learning algorithms to arsenic species and metallomics profiles of toenails to investigate the complex association between environmental arsenic (as a carcinogen) and prostate cancer. We present machine learning based models to ultimately predict the association of environmental arsenic exposure in cancer cases.
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Affiliation(s)
- Sheida Majouni
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Jong Sung Kim
- Department of Community Health and Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
- Health and Environments Research Centre (HERC) Laboratory, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Ellen Sweeney
- Atlantic Partnership for Tomorrow's Health (PATH), Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Erin Keltie
- Department of Community Health and Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
- Health and Environments Research Centre (HERC) Laboratory, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
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15
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Rad J, Tennankore KK, Vinson A, Abidi SSR. Extracting Surrogate Decision Trees from Black-Box Models to Explain the Temporal Importance of Clinical Features in Predicting Kidney Graft Survival. Artif Intell Med 2022. [DOI: 10.1007/978-3-031-09342-5_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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16
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Van Woensel W, Abidi S, Tennankore K, Worthen G, Abidi SSR. Clinical Guidelines as Executable and Interactive Workflows with FHIR-Compliant Health Data Input Using GLEAN. Artif Intell Med 2022. [DOI: 10.1007/978-3-031-09342-5_43] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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17
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Van Woensel W, Abidi S, Tennankore K, Worthen G, Abidi SSR. Explainable Decision Support Using Task Network Models in Notation3: Computerizing Lipid Management Clinical Guidelines as Interactive Task Networks. Artif Intell Med 2022. [DOI: 10.1007/978-3-031-09342-5_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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18
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Young-Shand K, Roy P, Dunbar M, Abidi SSR, Wilson J. Assessing Knee Osteoarthritis Severity and Biomechanical Changes After Total Knee Arthroplasty Using Self-organizing Maps. Artif Intell Med 2022. [DOI: 10.1007/978-3-031-09342-5_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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19
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Rose-Davis B, Van Woensel W, Raza Abidi S, Stringer E, Sibte Raza Abidi S. Semantic Knowledge Modeling and Evaluation of Argument Theory to Develop Dialogue based Patient Education Systems for Chronic Disease Self-Management. Int J Med Inform 2022; 160:104693. [DOI: 10.1016/j.ijmedinf.2022.104693] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 11/29/2021] [Accepted: 01/15/2022] [Indexed: 12/01/2022]
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20
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Van Woensel W, Elnenaei M, Abidi SSR, Clarke DB, Imran SA. Staged reflexive artificial intelligence driven testing algorithms for early diagnosis of pituitary disorders. Clin Biochem 2021; 97:48-53. [PMID: 34437886 DOI: 10.1016/j.clinbiochem.2021.08.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 07/30/2021] [Accepted: 08/20/2021] [Indexed: 11/15/2022]
Abstract
BACKGROUND Sellar masses (SM) frequently present with insidious hormonal dysfunction. We previously showed that, by utilizing a combined reflex/reflecting approach involving a laboratory clinician (LC) on common endocrine test results requested by non-specialists, and subsequently adding further warranted tests, previously undiagnosed pituitary disorders can be identified. However, manually employing these strategies by an LC is not feasible for wider screening of pituitary disorders. OBJECTIVE The aim of this study was to compare the accuracy and financial impact of an Artificial Intelligence (AI) based, fully computerized reflex protocol with manual reflex/reflective intervention protocol led by an LC. METHODS We developed a proof-of-concept AI-based framework to fully computerize multi-stage reflex testing protocols for pituitary dysfunction using automated reasoning methods. We compared the efficacy of this AI-based protocol with a reflex/reflective protocol based on manually curated retrospective data in identifying pituitary dysfunction based on 12 months of laboratory testing. RESULTS The AI-based reflex protocol, as compared with the manual protocol, would have identified laboratory tests for add-on that either directly matched or included all manual add-on tests in 92% of cases, and recommended a similar specialist referral in 90% of the cases. The AI-based protocol would have issued 2.8 times the total number of manual add-on laboratory tests at an 85% lower operation cost than the manual protocol when considering marginal test costs, technical staff and specialist salary. CONCLUSION/DISCUSSION Our AI-based reflex protocol can successfully identify patients with pituitary dysfunction, with lower estimated laboratory cost. Future research will focus on enhancing the protocol's accuracy and incorporating the AI-based reflex protocol into institutional laboratory and hospital information systems for the detection of undiagnosed pituitary disorders.
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Affiliation(s)
- William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - Manal Elnenaei
- Department of Pathology and Laboratory Medicine, Nova Scotia Health Authority, Dalhousie University, Halifax, NS, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - David B Clarke
- Division of Neurosurgery, Dalhousie University, Halifax, NS Canada
| | - Syed Ali Imran
- Division of Endocrinology, Dalhousie University, Halifax, NS Canada.
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21
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Naqvi SAA, Tennankore K, Vinson A, Roy PC, Abidi SSR. Predicting Kidney Graft Survival Using Machine Learning Methods: Prediction Model Development and Feature Significance Analysis Study. J Med Internet Res 2021; 23:e26843. [PMID: 34448704 PMCID: PMC8433864 DOI: 10.2196/26843] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Revised: 03/10/2021] [Accepted: 05/06/2021] [Indexed: 11/13/2022] Open
Abstract
BACKGROUND Kidney transplantation is the optimal treatment for patients with end-stage renal disease. Short- and long-term kidney graft survival is influenced by a number of donor and recipient factors. Predicting the success of kidney transplantation is important for optimizing kidney allocation. OBJECTIVE The aim of this study was to predict the risk of kidney graft failure across three temporal cohorts (within 1 year, within 5 years, and after 5 years following a transplant) based on donor and recipient characteristics. We analyzed a large data set comprising over 50,000 kidney transplants covering an approximate 20-year period. METHODS We applied machine learning-based classification algorithms to develop prediction models for the risk of graft failure for three different temporal cohorts. Deep learning-based autoencoders were applied for data dimensionality reduction, which improved the prediction performance. The influence of features on graft survival for each cohort was studied by investigating a new nonoverlapping patient stratification approach. RESULTS Our models predicted graft survival with area under the curve scores of 82% within 1 year, 69% within 5 years, and 81% within 17 years. The feature importance analysis elucidated the varying influence of clinical features on graft survival across the three different temporal cohorts. CONCLUSIONS In this study, we applied machine learning to develop risk prediction models for graft failure that demonstrated a high level of prediction performance. Acknowledging that these models performed better than those reported in the literature for existing risk prediction tools, future studies will focus on how best to incorporate these prediction models into clinical care algorithms to optimize the long-term health of kidney recipients.
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Affiliation(s)
| | | | - Amanda Vinson
- Division of Nephrology, Dalhousie University, Halifax, NS, Canada
| | - Patrice C Roy
- Department of Computer Science, Dalhousie University, Halifax, NS, Canada
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22
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Van Woensel W, Abidi SSR, Abidi SR. Decision support for comorbid conditions via execution-time integration of clinical guidelines using transaction-based semantics and temporal planning. Artif Intell Med 2021; 118:102127. [PMID: 34412844 DOI: 10.1016/j.artmed.2021.102127] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Revised: 05/04/2021] [Accepted: 06/22/2021] [Indexed: 11/25/2022]
Abstract
In case of comorbidity, i.e., multiple medical conditions, Clinical Decision Support Systems (CDSS) should issue recommendations based on all relevant disease-related Clinical Practice Guidelines (CPG). However, treatments from multiple comorbid CPG often interact adversely (e.g., drug-drug interactions) or introduce operational inefficiencies (e.g., redundant scans). A common solution is the a-priori integration of computerized CPG, which involves integration decisions such as discarding, replacing or delaying clinical tasks (e.g., treatments) to avoid adverse interactions or inefficiencies. We argue this insufficiently deals with execution-time events: as the patient's health profile evolves, acute conditions occur, and real-time delays take place, new CPG integration decisions will often be needed, and prior ones may need to be reverted or undone. Any realistic CPG integration effort needs to further consider temporal aspects of clinical tasks-these are not only restricted by temporal constraints from CPGs (e.g., sequential relations, task durations) but also by CPG integration efforts (e.g., avoid treatment overlap). This poses a complex execution-time challenge and makes it difficult to determine an up-to-date, optimal comorbid care plan. We present a solution for dynamic integration of CPG in response to evolving health profiles and execution-time events. CPG integration policies are formulated by clinical experts for coping with comorbidity at execution-time, with clearly defined integration semantics that build on Description and Transaction Logics. A dynamic planning approach reconciles temporal constraints of CPG tasks at execution-time based on their importance, and continuously updates an optimal task schedule.
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Affiliation(s)
- William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, 6050 University Ave, Halifax, NS B3H 1W5, Canada.
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, 6050 University Ave, Halifax, NS B3H 1W5, Canada.
| | - Samina Raza Abidi
- Faculty of Medicine, Dalhousie University, 1459 Oxford Street, Halifax, NS B3H 4R2, Canada.
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23
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Naqvi SAA, Tennankore K, Vinson A, Abidi SSR. Analyzing Association Rules for Graft Failure Following Deceased and Live Donor Kidney Transplantation. Stud Health Technol Inform 2021; 281:188-192. [PMID: 34042731 DOI: 10.3233/shti210146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
This paper investigates the clinical attributes that contribute to kidney graft failure following live and deceased donor transplantation using an association rule mining approach. The generated rules are used to analyze the distinctive co-occurrence of attributes for those with or without all-cause graft failure. Analysis of a kidney transplantation dataset acquired from the Scientific Registry of Transplant Recipients that included over 95000 deceased and live donor recipients over 5-years was performed. Using an association rule mining approach, we were able to confirm established risk factors for graft loss after live and deceased donor transplantation and identify novel combinations of factors that may have implications for clinical care and risk prediction post kidney transplantation. Using lift as the metric to evaluate association rules, our results indicate that advanced recipient age (i.e. over 60 years), end stage kidney disease due to diabetes, the presence of recipient peripheral vascular disease and recipient coronary artery disease have a high likelihood of graft failure within 5 years after transplantation.
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Affiliation(s)
| | | | - Amanda Vinson
- Department of Nephrology, Dalhousie University, Halifax, NS, Canada
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24
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Rad J, Quinn JG, Cheng C, Liwski R, Abidi SR, Abidi SSR. Using Interactive Visual Analytics to Optimize in Real-Time Blood Products Inventory at a Blood Bank. Stud Health Technol Inform 2021; 281:223-227. [PMID: 34042738 DOI: 10.3233/shti210153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Blood products and their derivatives are perishable commodities that require an efficient inventory management to ensure both a low wastage rate and a high product availability rate. To optimize blood product inventory, blood transfusion services need to reduce wastage by avoiding outdates and improve availability of different blood products. We used advance visualization techniques to design and develop a highly interactive real-time web-based dashboard to monitor the blood product inventory and the on-going blood unit transactions in near-real-time based on analysis of transactional data. Blood transfusion staff use the dashboard to locate units with specific characteristics, investigate the lifecycle of the units, and efficiently transfer units between facilities to minimize outdates.
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Affiliation(s)
- Jaber Rad
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Jason G Quinn
- Department of Pathology and Laboratory Medicine, Nova Scotia Health Authority, Halifax, Canada
| | - Calvino Cheng
- Department of Pathology and Laboratory Medicine, Nova Scotia Health Authority, Halifax, Canada
| | - Robert Liwski
- Department of Pathology and Laboratory Medicine, Nova Scotia Health Authority, Halifax, Canada
| | - Samina Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
- Department of Community Health and Epidemiology, Dalhousie University, Halifax, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
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25
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Van Woensel W, Armstrong C, Rajaratnam M, Gupta V, Abidi SSR. Using Knowledge Graphs to Plausibly Infer Missing Associations in EMR Data. Stud Health Technol Inform 2021; 281:417-421. [PMID: 34042777 DOI: 10.3233/shti210192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Electronic Medical Records (EMRs) are increasingly being deployed at primary points of care and clinics for digital record keeping, increasing productivity and improving communication. In practice, however, there still exists an often incomplete picture of patient profiles, not only because of disconnected EMR systems but also due to incomplete EMR data entry - often caused by clinician time constraints and lack of data entry restrictions. To complete a patient's partial EMR data, we plausibly infer missing causal associations between medical EMR concepts, such as diagnoses and treatments, for situations that lack sufficient raw data to enable machine learning methods. We follow a knowledge-based approach, where we leverage open medical knowledge sources such as SNOMED-CT and ICD, combined with knowledge-based reasoning with explainable inferences, to infer clinical encounter information from incomplete medical records. To bootstrap this process, we apply a semantic Extract-Transform-Load process to convert an EMR database into an enriched domain-specific Knowledge Graph.
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Affiliation(s)
- William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
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26
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Van Woensel W, Elnenaei M, Imran SA, Abidi SSR. Semantic Web Framework to Computerize Staged Reflex Testing Protocols to Mitigate Underutilization of Pathology Tests for Diagnosing Pituitary Disorders. Artif Intell Med 2021. [DOI: 10.1007/978-3-030-77211-6_13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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27
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Van Woensel W, Roy PC, Abidi SSR, Abidi SR. Indoor location identification of patients for directing virtual care: An AI approach using machine learning and knowledge-based methods. Artif Intell Med 2020; 108:101931. [DOI: 10.1016/j.artmed.2020.101931] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 05/18/2020] [Accepted: 07/11/2020] [Indexed: 12/22/2022]
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28
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Van Woensel W, Abidi S, Jafarpour B, Abidi SSR. A CIG Integration Framework to Provide Decision Support for Comorbid Conditions Using Transaction-Based Semantics and Temporal Planning. Artif Intell Med 2020. [DOI: 10.1007/978-3-030-59137-3_39] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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29
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Mufti HN, Hirsch GM, Abidi SR, Abidi SSR. Exploiting Machine Learning Algorithms and Methods for the Prediction of Agitated Delirium After Cardiac Surgery: Models Development and Validation Study. JMIR Med Inform 2019; 7:e14993. [PMID: 31558433 PMCID: PMC6913743 DOI: 10.2196/14993] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 09/02/2019] [Accepted: 09/24/2019] [Indexed: 12/28/2022] Open
Abstract
Background Delirium is a temporary mental disorder that occasionally affects patients undergoing surgery, especially cardiac surgery. It is strongly associated with major adverse events, which in turn leads to increased cost and poor outcomes (eg, need for nursing home due to cognitive impairment, stroke, and death). The ability to foresee patients at risk of delirium will guide the timely initiation of multimodal preventive interventions, which will aid in reducing the burden and negative consequences associated with delirium. Several studies have focused on the prediction of delirium. However, the number of studies in cardiac surgical patients that have used machine learning methods is very limited. Objective This study aimed to explore the application of several machine learning predictive models that can pre-emptively predict delirium in patients undergoing cardiac surgery and compare their performance. Methods We investigated a number of machine learning methods to develop models that can predict delirium after cardiac surgery. A clinical dataset comprising over 5000 actual patients who underwent cardiac surgery in a single center was used to develop the models using logistic regression, artificial neural networks (ANN), support vector machines (SVM), Bayesian belief networks (BBN), naïve Bayesian, random forest, and decision trees. Results Only 507 out of 5584 patients (11.4%) developed delirium. We addressed the underlying class imbalance, using random undersampling, in the training dataset. The final prediction performance was validated on a separate test dataset. Owing to the target class imbalance, several measures were used to evaluate algorithm’s performance for the delirium class on the test dataset. Out of the selected algorithms, the SVM algorithm had the best F1 score for positive cases, kappa, and positive predictive value (40.2%, 29.3%, and 29.7%, respectively) with a P=.01, .03, .02, respectively. The ANN had the best receiver-operator area-under the curve (78.2%; P=.03). The BBN had the best precision-recall area-under the curve for detecting positive cases (30.4%; P=.03). Conclusions Although delirium is inherently complex, preventive measures to mitigate its negative effect can be applied proactively if patients at risk are prospectively identified. Our results highlight 2 important points: (1) addressing class imbalance on the training dataset will augment machine learning model’s performance in identifying patients likely to develop postoperative delirium, and (2) as the prediction of postoperative delirium is difficult because it is multifactorial and has complex pathophysiology, applying machine learning methods (complex or simple) may improve the prediction by revealing hidden patterns, which will lead to cost reduction by prevention of complications and will optimize patients’ outcomes.
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Affiliation(s)
- Hani Nabeel Mufti
- Division of Cardiac Surgery, Department of Cardiac Sciences, King Faisal Cardiac Center, King Abdulaziz Medical City, Ministry of National Guard Health Affairs - Western Region, Jeddah, Saudi Arabia.,College of Medicine-Jeddah, King Saud bin Abdulaziz University for Health, Ministry of National Guard Health Affairs, Jeddah, Saudi Arabia.,King Abdullah International Medical Research Center, Jeddah, Saudi Arabia
| | | | - Samina Raza Abidi
- Department of Community Health and Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, NS, Canada
| | - Syed Sibte Raza Abidi
- kNowledge Intensive Computing for Healthcare Enterprise Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
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30
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Rose-Davis B, Van Woensel W, Stringer E, Abidi S, Abidi SSR. Using an Artificial Intelligence-Based Argument Theory to Generate Automated Patient Education Dialogues for Families of Children with Juvenile Idiopathic Arthritis. Stud Health Technol Inform 2019; 264:1337-1341. [PMID: 31438143 DOI: 10.3233/shti190444] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Juvenile Idiopathic Arthritis (JIA) is the most common chronic rheumatic disease of childhood, with outcomes including pain, prolonged dependence on medications, and disability. Parents of children with JIA report being overwhelmed by the volume of information in the patient education materials that are available to them. This paper addresses this educational gap by applying an artificial intelligence method, based on an extended model of argument, to design and implement a dialogue system that allows users get the educational material they need, when they need it. In the developed system, the studied model of argument was leveraged as part of the system's dialogue manager. A qualitative evaluation of the system, using cognitive walkthroughs and semi-structured interviews with JIA domain experts, suggests that these methods show great promise for providing quality information to families of children with JIA when they need it.
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Affiliation(s)
- Benjamin Rose-Davis
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Elizabeth Stringer
- Division of Pediatric Rheumatology, IWK Health Centre, Halifax, Nova Scotia, Canada
| | - Samina Abidi
- Department of Epidemiology and Population Health, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
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da Luz Dias R, de Oliveira Lima M, Alves JGB, Van Woensel W, Naqvi A, Take Z, Abidi SSR. A Digital Health Platform to Deliver Tailored Early Stimulation Programs for Children with Developmental Delays. Stud Health Technol Inform 2019; 264:571-575. [PMID: 31437988 DOI: 10.3233/shti190287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Developmental delay is a deviation from the regular development of normative milestones during childhood. Early stimulation is a standardized and straightforward technique to support children with developmental delays (aged 0-3 years) in reaching basic motor skills, which are essential for the execution of everyday activities, such as playing, feeding and locomotion. In doing so, early stimulation reduces the chances of permanent motor impairment, thus allowing the child to live a more functional life. However, outcomes of this treatment depend heavily on the involvement of the family, who are required to continue the early stimulation activities at home on a daily basis. To empower and educate families to administer standardized early stimulation programs at home, we developed an electronic early stimulation program, which provides personalized guidance to parents to administer early stimulation; together with evidence-based clinical decision support to therapists in tailoring ESP to observed needs.
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Affiliation(s)
- Raquel da Luz Dias
- Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Marcela de Oliveira Lima
- Rehabilitation Centre Prof. Fernando Figueira Integral Medicine Institute, Recife, Pernambuco, Brazil
| | | | - William Van Woensel
- Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Asil Naqvi
- Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Zahra Take
- Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
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Van Woensel W, Abidi S, Abidi SSR. Proactively Guiding Patients Through ADL via Knowledge-Based and Context-Driven Activity Recognition. Stud Health Technol Inform 2019; 264:863-867. [PMID: 31438047 DOI: 10.3233/shti190346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Assisted Ambient Living (AAL) focuses on self-sufficiency, assisting disabled people to perform activities of daily living (ADL) by automating assistive actions in smart environments. Importantly, AAL provides opportunities for dynamically guiding patients with a cognitive decline through an ADL. Activity recognition is a pivotal task since it allows detecting when an ADL is started by recognizing its constituent activities. When dealing cognitive decline, activity recognition should also be able to detect when activities are performed incorrectly-e.g., performed out-of-order, at the wrong location or time, or with the wrong objects (e.g., utensils) - which is nevertheless not a common goal in activity recognition. Moreover, it should be able to cope with non-uniform ways of performing the ADL that are nevertheless correct. We present a novel knowledge-driven activity recognition approach, which employs semantic reasoning to recognize both correct and incorrect actions, based on the ADL workflow as well as associated environment context.
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Affiliation(s)
- William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Samina Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
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Daowd A, Faizan S, Abidi S, Abusharekh A, Shehzad A, Abidi SSR. Towards Personalized Lifetime Health: A Platform for Early Multimorbid Chronic Disease Risk Assessment and Mitigation. Stud Health Technol Inform 2019; 264:935-939. [PMID: 31438061 DOI: 10.3233/shti190361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Chronic diseases are the leading cause of morbidity, disability and mortality worldwide. It is well established that the majority of chronic diseases can be prevented by targeting modifiable lifestyle-related risk factors. Thus, early risk assessment and mitigation at the individual level can significantly reduce the health and economic burden of chronic diseases. Lifetime health has emerged as a potential paradigm to assist individuals to avoid harmful lifestyle-related habits to reduce the risk of chronic morbidity. In this paper, we leverage eHealth and Quantified Self technologies, novel health data visualizations, and artificial intelligence methods to develop a digital-based lifetime health platform (PRISM) to empower individuals to self-assess, self-monitor, and self-manage their risks for multiple chronic diseases and associated morbidities.
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Affiliation(s)
- Ali Daowd
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Syed Faizan
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Samina Abidi
- Department of Community Health & Epidemiology, Dalhousie University, Halifax, Canada
| | - Ashraf Abusharekh
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Aaqib Shehzad
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Canada
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Van Woensel W, Abidi S, Jafarpour B, Abidi SSR. Providing Comorbid Decision Support via the Integration of Clinical Practice Guidelines at Execution-Time by Leveraging Medical Linked Open Datasets. Stud Health Technol Inform 2019; 264:858-862. [PMID: 31438046 DOI: 10.3233/shti190345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Clinical Decision Support Systems (CDSS) utilize computerized Clinical Practice Guidelines (CPG) to deliver evidence-based care recommendations. However, when dealing with comorbidity (i.e., patients with multiple conditions), disease-specific CPG often interact in adverse ways (e.g., drug-drug, drug-disease interactions), and may involve redundant elements as well (e.g., repeated care tasks). To avoid adverse interactions and optimize care, current options involve the static, a priori integration of comorbid CPG by replacing or removing therapeutic tasks. Nevertheless, many aspects are relevant to a clinically safe and efficient integration, and these may change over time-task delays, test outcomes, and health profiles-which are not taken into account by static integrations. Moreover, in case of comorbidity, clinical practice often demands nuanced solutions, based on current health profiles. We propose an execution-time approach to safely and efficiently cope with comorbid conditions, leveraging knowledge from medical Linked Open Datasets to aid during CIG integration.
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Affiliation(s)
- William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Samina Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Borna Jafarpour
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
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Abstract
Healthcare is a living system that generates a significant volume of heterogeneous data. As healthcare systems are pivoting to value-based systems, intelligent and interactive analysis of health data is gaining significance for health system management, especially for resource optimization whilst improving care quality and health outcomes. Health data analytics is being influenced by new concepts and intelligent methods emanating from artificial intelligence and big data. In this article, we contextualize health data and health data analytics in terms of the emerging trends of artificial intelligence and big data. We examine the nature of health data using the big data criterion to understand "how big" is health data. Next, we explain the working of artificial intelligence-based data analytics methods and discuss "what insights" can be derived from a broad spectrum of health data analytics methods to improve health system management, health outcomes, knowledge discovery, and healthcare innovation.
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Affiliation(s)
- Syed Sibte Raza Abidi
- 1 NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada
| | - Samina Raza Abidi
- 2 NICHE Research Group, Department of Community Health and Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, Nova Scotia, Canada
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Jafarpour B, Raza Abidi S, Van Woensel W, Raza Abidi SS. Execution-time integration of clinical practice guidelines to provide decision support for comorbid conditions. Artif Intell Med 2019; 94:117-137. [PMID: 30871678 DOI: 10.1016/j.artmed.2019.02.003] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2017] [Revised: 11/30/2018] [Accepted: 02/17/2019] [Indexed: 01/11/2023]
Abstract
Patients with multiple medical conditions (comorbidity) pose major challenges to clinical decision support systems, since the different Clinical Practice Guidelines (CPG) often involve adverse interactions, such as drug-drug or drug-disease interactions. Moreover, opportunities often exist for optimizing care and resources across multiple CPG. These challenges have been taken up in the state of the art, with many approaches focusing on the static integration of comorbid CIG. Nevertheless, we observe that many aspects often change dynamically over time, in ways that cannot be foreseen - such as delays in care tasks, resource availability, test outcomes, and acute comorbid conditions. To ensure the clinical safety and effectiveness of integrating multiple comorbid CIG, these execution-time difficulties must be considered. Further, when dealing with comorbid conditions, we remark that clinical practitioners typically consider multiple complex solutions, depending on the patient's health profile. Hence, execution-time flexibility, based on dynamic health parameters, is needed to effectively and safely cope with comorbid conditions. In this work, we introduce a flexible, knowledge-driven and execution-time approach to comorbid CIG integration, based on an OWL ontology with clearly defined integration semantics.
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Affiliation(s)
- Borna Jafarpour
- Faculty of Computer Science, Dalhousie University, 6050 University Ave, Halifax, NS, B3H 1W5, Canada.
| | - Samina Raza Abidi
- Faculty of Medicine, Dalhousie University, 1459 Oxford Street, Halifax, NS B3H 4R2, Canada.
| | - William Van Woensel
- Faculty of Computer Science, Dalhousie University, 6050 University Ave, Halifax, NS, B3H 1W5, Canada.
| | - Syed Sibte Raza Abidi
- Faculty of Computer Science, Dalhousie University, 6050 University Ave, Halifax, NS, B3H 1W5, Canada.
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Roy PC, Van Woensel W, Wilcox A, Abidi SSR. Mobile Indoor Localization with Bluetooth Beacons in a Pediatric Emergency Department Using Clustering, Rule-Based Classification and High-Level Heuristics. Artif Intell Med 2019. [DOI: 10.1007/978-3-030-21642-9_27] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Abidi S, Vallis M, Piccinini-Vallis H, Imran SA, Abidi SSR. Diabetes-Related Behavior Change Knowledge Transfer to Primary Care Practitioners and Patients: Implementation and Evaluation of a Digital Health Platform. JMIR Med Inform 2018; 6:e25. [PMID: 29669705 PMCID: PMC5932333 DOI: 10.2196/medinform.9629] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 02/04/2018] [Accepted: 02/08/2018] [Indexed: 01/24/2023] Open
Abstract
BACKGROUND Behavioral science is now being integrated into diabetes self-management interventions. However, the challenge that presents itself is how to translate these knowledge resources during care so that primary care practitioners can use them to offer evidence-informed behavior change support and diabetes management recommendations to patients with diabetes. OBJECTIVE The aim of this study was to develop and evaluate a computerized decision support platform called "Diabetes Web-Centric Information and Support Environment" (DWISE) that assists primary care practitioners in applying standardized behavior change strategies and clinical practice guidelines-based recommendations to an individual patient and empower the patient with the skills and knowledge required to self-manage their diabetes through planned, personalized, and pervasive behavior change strategies. METHODS A health care knowledge management approach is used to implement DWISE so that it features the following functionalities: (1) assessment of primary care practitioners' readiness to administer validated behavior change interventions to patients with diabetes; (2) educational support for primary care practitioners to help them offer behavior change interventions to patients; (3) access to evidence-based material, such as the Canadian Diabetes Association's (CDA) clinical practice guidelines, to primary care practitioners; (4) development of personalized patient self-management programs to help patients with diabetes achieve healthy behaviors to meet CDA targets for managing type 2 diabetes; (5) educational support for patients to help them achieve behavior change; and (6) monitoring of the patients' progress to assess their adherence to the behavior change program and motivating them to ensure compliance with their program. DWISE offers these functionalities through an interactive Web-based interface to primary care practitioners, whereas the patient's self-management program and associated behavior interventions are delivered through a mobile patient diary via mobile phones and tablets. DWISE has been tested for its usability, functionality, usefulness, and acceptance through a series of qualitative studies. RESULTS For the primary care practitioner tool, most usability problems were associated with the navigation of the tool and the presentation, formatting, understandability, and suitability of the content. For the patient tool, most issues were related to the tool's screen layout, design features, understandability of the content, clarity of the labels used, and navigation across the tool. Facilitators and barriers to DWISE use in a shared decision-making environment have also been identified. CONCLUSIONS This work has provided a unique electronic health solution to translate complex health care knowledge in terms of easy-to-use, evidence-informed, point-of-care decision aids for primary care practitioners. Patients' feedback is now being used to make necessary modification to DWISE.
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Affiliation(s)
- Samina Abidi
- Medical Informatics Program, Department of Community Health and Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, NS, Canada
| | - Michael Vallis
- Department of Family Medicine, Faculty of Medicine, Dalhousie University, Halifax, NS, Canada
| | - Helena Piccinini-Vallis
- Department of Family Medicine, Faculty of Medicine, Dalhousie University, Halifax, NS, Canada
| | - Syed Ali Imran
- Division of Endocrinology and Metabolism, Faculty of Medicine, Dalhousie University, Halifax, NS, Canada
| | - Syed Sibte Raza Abidi
- Knowledge Intensive Computing for Healthcare Enterprises Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
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Dias RDL, Silva KCCG, Lima MRDO, Alves JGB, Abidi SSR. A Mobile Early Stimulation Program to Support Children with Developmental Delays in Brazil. Stud Health Technol Inform 2018; 247:785-789. [PMID: 29678068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Developmental delay is a deviation development from the normative milestones during the childhood and it may be caused by neurological disorders. Early stimulation is a standardized and simple technique to treat developmental delays in children (aged 0-3 years), allowing them to reach the best development possible and to mitigate neuropsychomotor sequelae. However, the outcomes of the treatment depending on the involvement of the family, to continue the activities at home on a daily basis. To empower and educate parents of children with neurodevelopmental delays to administer standardized early stimulation programs at home, we developed a mobile early stimulation program that provides timely and evidence-based clinical decision support to health professionals and a personalized guidance to parents about how to administer early stimulation to their child at home.
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Rose-Davis B, Stringer E, Abidi S, Abidi SSR. Interactive Dialogue-Based Patient Education for Juvenile Idiopathic Arthritis Using Argument Theory. Stud Health Technol Inform 2018; 247:546-550. [PMID: 29678020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Families of children with Juvenile Idiopathic Arthritis need a way to interact with Patient Education Materials (PEM) so that learning occurs at their own pace, on topics that are relevant to them. This paper proposes a novel, dialogue-based approach to address these needs. Using an extended version of Toulmin's model of argument as a theory-based classification method, we digitized paper-based PEM to render an interactive dialogue. The dialogue allows the user to explore a topic with respect to their interests and apprehensions as opposed to providing a static, generic document.
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Affiliation(s)
- Benjamin Rose-Davis
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
| | | | - Samina Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
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Daowd A, Abidi SR, Abusharekh A, Abidi SSR. A Personalized Risk Stratification Platform for Population Lifetime Healthcare. Stud Health Technol Inform 2018; 247:920-924. [PMID: 29678095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Chronic diseases are the leading cause of death worldwide. It is well understood that if modifiable risk factors are targeted, most chronic diseases can be prevented. Lifetime health is an emerging health paradigm that aims to assist individuals to achieve desired health targets, and avoid harmful lifecycle choices to mitigate the risk of chronic diseases. Early risk identification is central to lifetime health. In this paper, we present a digital health-based platform (PRISM) that leverages artificial intelligence, data visualization and mobile health technologies to empower citizens to self-assess, self-monitor and self-manage their overall risk of major chronic diseases and pursue personalized chronic disease prevention programs. PRISM offers risk assessment tools for 5 chronic conditions, 2 psychiatric disorders and 8 different cancers.
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Affiliation(s)
- Ali Daowd
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
| | - Samina Raza Abidi
- Dept. of Community Health & Epidemiology, Dalhousie University, Canada
| | - Ashraf Abusharekh
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
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Maghsoud-Lou E, Christie S, Abidi SR, Abidi SSR. Protocol-Driven Decision Support within e-Referral Systems to Streamline Patient Consultation, Triaging and Referrals from Primary Care to Specialist Clinics. J Med Syst 2017; 41:139. [PMID: 28766103 DOI: 10.1007/s10916-017-0791-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Accepted: 07/26/2017] [Indexed: 11/25/2022]
Abstract
Patient referral is a protocol where the referring primary care physician refers the patient to a specialist for further treatment. The paper-based current referral process at times lead to communication and operational issues, resulting in either an unfulfilled referral request or an unnecessary referral request. Despite the availability of standardized referral protocols they are not readily applied because they are tedious and time-consuming, thus resulting in suboptimal referral requests. We present a semantic-web based Referral Knowledge Modeling and Execution Framework to computerize referral protocols, clinical guidelines and assessment tools in order to develop a computerized e-Referral system that offers protocol-based decision support to streamline and standardize the referral process. We have developed a Spinal Problem E-Referral (SPER) system that computerizes the Spinal Condition Consultation Protocol (SCCP) mandated by the Halifax Infirmary Division of Neurosurgery (Halifax, Canada) for referrals for spine related conditions (such as back pain). The SPER system executes the ontologically modeled SCCP to determine (i) patient's triaging option as per severity assessments stipulated by SCCP; and (b) clinical recommendations as per the clinical guidelines incorporated within SCCP. In operation, the SPER system identifies the critical cases and triages them for specialist referral, whereas for non-critical cases SPER system provides clinical guideline based recommendations to help the primary care physician effectively manage the patient. The SPER system has undergone a pilot usability study and was deemed to be easy to use by physicians with potential to improve the referral process within the Division of Neurosurgery at QEII Health Science Center, Halifax, Canada.
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Affiliation(s)
- Ehsan Maghsoud-Lou
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - Sean Christie
- Division of Neurosurgery, Dalhousie University, Halifax, NS, Canada
| | - Samina Raza Abidi
- Department of Community Health and Epidemiology, Faculty of Medicine, Dalhousie University, Halifax, NS, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada.
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Stewart SA, Abidi SSR. Leveraging medical taxonomies to improve knowledge management within online communities of practice: The knowledge maps system. Comput Methods Programs Biomed 2017; 143:121-127. [PMID: 28391809 DOI: 10.1016/j.cmpb.2017.03.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Revised: 02/17/2017] [Accepted: 03/01/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND AND OBJECTIVE Online communities of practice contain a wealth of information, stored in the free text of shared communications between community members. The Knowledge Maps (KMaps) system is designed to facilitate Knowledge Translation in online communities through multi-level analyses of the shared messages of these communications. METHODS Using state-of-the-art semantic mapping technologies (Metamap) the contents of the messages shared within an online community are mapped to terms from the MeSH medical lexicon, providing a multi-level topic-specific summary of the knowledge being shared within the community. Using the inherent hierarchical structure of the lexicon important insights can be found within the community. RESULTS The KMaps system was applied to two medical mailing lists, the PPML (archives from 2009-02 to 2013-02) and SURGINET (archives from 2012-01 to 2013-04), identifying 27,924 and 50,597 medical terms respectively. KMaps identified content areas where both communities found interest, specifically around Diseases, 22% and 24% of the total terms, while also identifying field-specific areas that were more popular: SURGINET expressed an interest in Anatomy (14% vs 4%) while the PPML was more interested in Drugs (19% vs 9%). At the level of the individual KMaps identified 6 PPML users and 9 SURGINET users that had noticeably more contributions to the community than their peers, and investigated their personal areas of interest. CONCLUSION The KMaps system provides valuable insights into the structure of both communities, identifying topics of interest/shared content areas and defining content-profiles for individual community members. The system provides a valuable addition to the online KT process.
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Affiliation(s)
- Samuel Alan Stewart
- Medical Informatics, Department of Community Health and Epidemiology, Faculty of Medicine, Canada.
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science Dalhousie University, Halifax, NS, Canada
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Mohammadhassanzadeh H, Van Woensel W, Abidi SR, Abidi SSR. Semantics-based plausible reasoning to extend the knowledge coverage of medical knowledge bases for improved clinical decision support. BioData Min 2017; 10:7. [PMID: 28203277 PMCID: PMC5303296 DOI: 10.1186/s13040-017-0123-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 01/10/2017] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Capturing complete medical knowledge is challenging-often due to incomplete patient Electronic Health Records (EHR), but also because of valuable, tacit medical knowledge hidden away in physicians' experiences. To extend the coverage of incomplete medical knowledge-based systems beyond their deductive closure, and thus enhance their decision-support capabilities, we argue that innovative, multi-strategy reasoning approaches should be applied. In particular, plausible reasoning mechanisms apply patterns from human thought processes, such as generalization, similarity and interpolation, based on attributional, hierarchical, and relational knowledge. Plausible reasoning mechanisms include inductive reasoning, which generalizes the commonalities among the data to induce new rules, and analogical reasoning, which is guided by data similarities to infer new facts. By further leveraging rich, biomedical Semantic Web ontologies to represent medical knowledge, both known and tentative, we increase the accuracy and expressivity of plausible reasoning, and cope with issues such as data heterogeneity, inconsistency and interoperability. In this paper, we present a Semantic Web-based, multi-strategy reasoning approach, which integrates deductive and plausible reasoning and exploits Semantic Web technology to solve complex clinical decision support queries. RESULTS We evaluated our system using a real-world medical dataset of patients with hepatitis, from which we randomly removed different percentages of data (5%, 10%, 15%, and 20%) to reflect scenarios with increasing amounts of incomplete medical knowledge. To increase the reliability of the results, we generated 5 independent datasets for each percentage of missing values, which resulted in 20 experimental datasets (in addition to the original dataset). The results show that plausibly inferred knowledge extends the coverage of the knowledge base by, on average, 2%, 7%, 12%, and 16% for datasets with, respectively, 5%, 10%, 15%, and 20% of missing values. This expansion in the KB coverage allowed solving complex disease diagnostic queries that were previously unresolvable, without losing the correctness of the answers. However, compared to deductive reasoning, data-intensive plausible reasoning mechanisms yield a significant performance overhead. CONCLUSIONS We observed that plausible reasoning approaches, by generating tentative inferences and leveraging domain knowledge of experts, allow us to extend the coverage of medical knowledge bases, resulting in improved clinical decision support. Second, by leveraging OWL ontological knowledge, we are able to increase the expressivity and accuracy of plausible reasoning methods. Third, our approach is applicable to clinical decision support systems for a range of chronic diseases.
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Affiliation(s)
| | - William Van Woensel
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS B3H4R2 Canada
| | - Samina Raza Abidi
- Medical Informatics, Faculty of Medicine, Dalhousie University, Halifax, NS B3H4R2 Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS B3H4R2 Canada
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Roy PC, Abidi SR, Abidi SSR. Monitoring Activities Related to Medication Adherence in Ambient Assisted Living Environments. Stud Health Technol Inform 2017; 235:28-32. [PMID: 28423749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
A recent trend in healthcare is to motivate patients to self-manage their health conditions in home-based settings. Medication adherence is an important aspect in disease self-management since sub-optimal medication adherence by the patient can lead to serious healthcare costs and discomfort for the patient. In order to alleviate the limitations of self-reported medication adherence, we can use ambient assistive living (AAL) technologies in smart environments. Activity recognition services allow to retrieve self-management information related to medication adherence in a less intrusive way. By remotely monitor compliance with medication adherence, self-management program's interventions can be tailored and adapted based on the observed patient's behaviour. To address this challenge, we present an AAL framework that monitor activities related to medication adherence.
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Affiliation(s)
- Patrice C Roy
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
| | - Samina Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Canada
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Abidi S, Vallis M, Piccinini-Vallis H, Imran SA, Abidi SSR. A Digital Framework to Support Providers and Patients in Diabetes Related Behavior Modification. Stud Health Technol Inform 2017; 235:589-593. [PMID: 28423861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We present Diabetes Web-Centric Information and Support Environment (D-WISE) that features: (a) Decision support tool to assist family physicians to administer Behavior Modification (BM) strategies to patients; and (b) Patient BM application that offers BM strategies and motivational interventions to engage patients. We take a knowledge management approach, using semantic web technologies, to model the social cognition theory constructs, Canadian diabetes guidelines and BM protocols used locally, in terms of a BM ontology that drives the BM decision support to physicians and BM strategy adherence monitoring and messaging to patients. We present the qualitative analysis of D-WISE usability by both physicians and patients.
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Affiliation(s)
- Samina Abidi
- Medical Informatics, Faculty of Medicine, Dalhouise University, Canada
| | - Michael Vallis
- NSHA Behavior Change Institute, QEII Health Sciences Center, Halifax, Canada
| | | | - Syed Ali Imran
- Division of Endocrinology and Metabolism, Dalhousie University, Canada
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Rajabi E, Abidi SSR. Discovering Central Practitioners in a Medical Discussion Forum Using Semantic Web Analytics. Stud Health Technol Inform 2017; 235:486-490. [PMID: 28423840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The aim of this paper is to investigate semantic web based methods to enrich and transform a medical discussion forum in order to perform semantics-driven social network analysis. We use the centrality measures as well as semantic similarity metrics to identify the most influential practitioners within a discussion forum. The centrality results of our approach are in line with centrality measures produced by traditional SNA methods, thus validating the applicability of semantic web based methods for SNA, particularly for analyzing social networks for specialized discussion forums.
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Affiliation(s)
- Enayat Rajabi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - Syed Sibte Raza Abidi
- NICHE Research Group, Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
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Curran-Smith J, Abidi SSR, Forgeron P. Towards a collaborative learning environment for children’s pain management: leveraging an online discussion forum. Health Informatics J 2016. [DOI: 10.1177/1460458205050682] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Effective management of pediatric pain requires proactive and effective collaboration between health practitioners from a variety of health disciplines. This article investigates the merits of a collaborative learning environment to address the knowledge gaps experienced by a community of pediatric pain practitioners. We present a knowledge management solution that leverages an online discussion forum as a collaborative learning environment rooted in team members sharing experiences, offering support to solve problems, guiding members to information/knowledge resources, informing peers about clinical practice guidelines, and simply seeking advice on matters pertaining to pediatric pain management. Team interactions, via the discussion forum, will be captured and represented as a social network to provide useful insights into the dynamics of team collaboration and to identify the patterns of knowledge flow amongst the team members.
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Affiliation(s)
- Janet Curran-Smith
- Health Informatics Lab, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Syed Sibte Raza Abidi
- Health Informatics Lab, Faculty of Computer Science, Dalhousie University, Halifax, Canada
| | - Paula Forgeron
- Children’s Health Program, IWK Health Centre, Halifax, Canada
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Abidi SSR, Kershaw M, Milios E. Augmenting GEM-encoded clinical practice guidelines with relevant best evidence autonomously retrieved from MEDLINE. Health Informatics J 2016. [DOI: 10.1177/1460458205050684] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Clinical practice guidelines (CPG) are instrumental in standardizing the quality and delivery of care across different practitioners, departments and institutions. Health practitioners will use current best evidence to validate or supplement their understanding of CPG. This study investigates the potential of supplementing computerized CPG with relevant best evidence sourced from reliable medical literature repositories. A web-enabled Best-evidence Retrieval and Delivery (BiRD) system facilitates autonomous retrieval of pertinent medical literature with respect to user-specified content from a GEM-encoded CPG. A multilevel literature search strategy categorizes the search towards predefined clinical query intentions, and subsequently filters insignificant medical terms. The resultant is a highly focused medical literature search query that is objectively derived from CPG content. The technical architecture comprises existing medical language processing tools and vocabularies, together with newly developed tools to automatically generate optimum search queries, retrieve medical articles from MEDLINE, and embed the articles within XML-based CPG.
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Affiliation(s)
- Syed Sibte Raza Abidi
- Health Informatics Laboratory, Faculty of Computer Science, Dalhousie
University, Halifax, Nova Scotia B3H 1W5, Canada,
| | - Michael Kershaw
- Health Informatics Laboratory, Faculty of Computer Science, Dalhousie
University, Halifax, Canada
| | - Evangelos Milios
- Health Informatics Laboratory, Faculty of Computer Science, Dalhousie
University, Halifax, Canada
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Abidi SR, Cox J, Abusharekh A, Hashemian N, Abidi SSR. A Digital Health System to Assist Family Physicians to Safely Prescribe NOAC Medications. Stud Health Technol Inform 2016; 228:519-523. [PMID: 27577437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Atrial Fibrillation (AF) is the most common cardiac arrhythmia. Generally, the therapeutic options for managing AF include the use of anticoagulant drugs that prevent the coagulation of blood. New Oral Anticoagulants (NOACs) are not optimally prescribed to patients, despite their efficacy. In Canada, NOAC medications are not directly available to patients who belong to provincial benefits programs, rather a NOAC special authorization process establishes the eligibility of a patient to receive a NOAC and be paid by the provincial Pharmacare program. This special authorization process is tedious and paper-based which inhibits physicians to prescribe NOAC leading to suboptimal AF care to patients. In this paper, we present a computerized NOAC Authorization Decision Support System (NOAC-ADSS), accessible to physicians to help them (a) determine a patient eligibility for NOAC based on Canadian AF clinical guidelines, and (b) complete the special authorization form. We present a semantic web based system to ontologically model the NOAC eligibility criteria and execute the knowledge to determine a patient NOAC eligibility and dosage.
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Affiliation(s)
| | - Jafna Cox
- Division of Cardiology, Dalhousie University
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