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Ulsenheimer BC, Tonin AA, von Laer AE, Dos Santos HF, Sangioni LA, Fighera R, Dos Santos MY, Brayer DI, de Avila Botton S. Leptospira borgptersenii and Leptospira interrogans identified in wild mammals in Rio Grande do Sul, Brazil. Braz J Microbiol 2024:10.1007/s42770-024-01348-4. [PMID: 38691328 DOI: 10.1007/s42770-024-01348-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 04/15/2024] [Indexed: 05/03/2024] Open
Abstract
Leptospira spp. are bacteria responsible for leptospirosis, a zoonotic disease with considerable impacts on the economy, animal health, and public health. This disease has a global distribution and is particularly prevalent in Brazil. Both rural and urban environments are habitats for Leptospira spp., which are primarily transmitted through contact with the urine of infected animals. Consequently, domestic and wild species can harbor these prokaryotes and serve as infection sources for other hosts. In the context of wild animals, there is a dearth of molecular studies elucidating the roles of various animal and bacterial species in the epidemiology of leptospirosis. Therefore, this study aimed to evaluate the presence of Leptospira spp. DNA in different species of free-living and captive wild animals and to assess the phylogenetic relationships of the identified microorganisms in Rio Grande do Sul, Brazil. The samples were evaluated for the presence of the gene lipL32 by polymerase chain reaction (PCR) and sequencing of the amplified fragment after which phylogenetic analyzes were carried out. DNA from Leptospira spp. was extracted from kidney tissue from wild animals (Mammalia class). Pathogenic Leptospira spp. DNA was detected in 9.6% (11/114) of the samples, originating from nine species of wild animals, including the white-eared opossum (Didelphis albiventris), skunk (Conepatus chinga), geoffroy's cat (Leopardus geoffroyi), margay (Leopardus wiedii), pampas fox (Lycalopex gymnocercus), capybara (Hydrochoerus hydrochaeris), common marmoset (Callithrix jacchus), neotropical river otter (Lontra longicaudis), and european hare (Lepus europaeus). Phylogenetic analysis revealed the presence of Leptospira borgpetersenii and Leptospira interrogans in these animals. This research is the first study contributing to the epidemiology of leptospirosis by identifying L. borgpetersenii and L. interrogans in free-living and captive wild animals in Rio Grande do Sul, Brazil, potentially acting as bacterial reservoirs. Additionally, our findings can inform sanitary measures for controlling and preventing the disease, thereby safeguarding public health.
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Affiliation(s)
- Bruna Carolina Ulsenheimer
- Departamento de Medicina Veterinária Preventiva (DMVP), Programa de Pós-graduação em Medicina Veterinária (PPGMV), Universidade Federal de Santa Maria (UFSM), Centro de Ciências Rurais (CCR), Santa Maria, Rio Grande do Sul, CEP 97105-900, Brasil
- Departamento de Microbiologia e Parasitologia (DMIP), Laboratório de Diagnóstico e Pesquisa em Leptospirose (LabLepto), Universidade Federal de Santa Maria (UFSM), Centro de Ciências da Saúde (CCS), Santa Maria, CEP 97105-900, Brasil
| | - Alexandre Alberto Tonin
- Departamento de Microbiologia e Parasitologia (DMIP), Laboratório de Diagnóstico e Pesquisa em Leptospirose (LabLepto), Universidade Federal de Santa Maria (UFSM), Centro de Ciências da Saúde (CCS), Santa Maria, CEP 97105-900, Brasil
- Instituto Federal de Educação, Ciência e Tecnologia do Amazonas (IFAM), Campus Manaus, Manaus, Amazonas, CEP 69083-000, Brasil
| | - Ana Eucares von Laer
- Departamento de Microbiologia e Parasitologia (DMIP), Laboratório de Diagnóstico e Pesquisa em Leptospirose (LabLepto), Universidade Federal de Santa Maria (UFSM), Centro de Ciências da Saúde (CCS), Santa Maria, CEP 97105-900, Brasil
| | - Helton Fernandes Dos Santos
- Departamento de Medicina Veterinária Preventiva (DMVP), Programa de Pós-graduação em Medicina Veterinária (PPGMV), Universidade Federal de Santa Maria (UFSM), Centro de Ciências Rurais (CCR), Santa Maria, Rio Grande do Sul, CEP 97105-900, Brasil
| | - Luís Antônio Sangioni
- Departamento de Medicina Veterinária Preventiva (DMVP), Programa de Pós-graduação em Medicina Veterinária (PPGMV), Universidade Federal de Santa Maria (UFSM), Centro de Ciências Rurais (CCR), Santa Maria, Rio Grande do Sul, CEP 97105-900, Brasil
| | - Rafael Fighera
- Departamento de Patologia. Laboratório de Patologia Veterinária, Universidade Federal de Santa Maria (UFSM), Centro de Ciências da Saúde (CCS), Santa Maria, Rio Grande do Sul, CEP 97105-900, Brasil
| | - Matheus Yuri Dos Santos
- Departamento de Patologia. Laboratório de Patologia Veterinária, Universidade Federal de Santa Maria (UFSM), Centro de Ciências da Saúde (CCS), Santa Maria, Rio Grande do Sul, CEP 97105-900, Brasil
| | - Daniela Isabel Brayer
- Instituto de Biologia (IB), Departamento de Microbiologia e Parasitologia (DMIP), Universidade Federal de Pelotas (UFPel), Capão do Leão, Rio Grande do Sul, CEP 96010-900, Brasil
| | - Sônia de Avila Botton
- Departamento de Medicina Veterinária Preventiva (DMVP), Programa de Pós-graduação em Medicina Veterinária (PPGMV), Universidade Federal de Santa Maria (UFSM), Centro de Ciências Rurais (CCR), Santa Maria, Rio Grande do Sul, CEP 97105-900, Brasil.
- Departamento de Microbiologia e Parasitologia (DMIP), Laboratório de Diagnóstico e Pesquisa em Leptospirose (LabLepto), Universidade Federal de Santa Maria (UFSM), Centro de Ciências da Saúde (CCS), Santa Maria, CEP 97105-900, Brasil.
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Hydeskov HB, Arnemo JM, Lloyd Mills C, Gentle LK, Uzal A. A Global Systematic Review of Lead (Pb) Exposure and its Health Effects in Wild Mammals. J Wildl Dis 2024; 60:285-297. [PMID: 38345465 DOI: 10.7589/jwd-d-23-00055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 10/25/2023] [Indexed: 04/06/2024]
Abstract
Lead (Pb) is a toxic nonessential metal, known mainly for causing poisoning of humans and wild birds. However, little is known about Pb exposure and its associated health effects in wild mammals. We conducted a global systematic literature review to identify peer-reviewed studies published on Pb exposure in wild mammalian species and the health effects they identified. In total, 183 studies, conducted in 35 countries and published over 62 yr (1961-2022), were included in the review. Only 6% (11/183) of the studies were conducted in developing countries. Although 153 mammalian species were studied, most studies focused on species that are easy to access (i.e., hunted species and small mammals that are easy to trap). Therefore, carnivores and scavengers were less frequently studied than herbivores and omnivores. Despite all studies reporting Pb concentrations, only 45 (25%) studies investigated health effects and, of these 45 studies, only 28 (62%) found any health effect in 57 species. All health effects were negative and ranged from subclinical effects to fatality. Methodologies of Pb sampling and quantification and reporting of results varied widely across the studies, making both Pb concentrations and health effects difficult to compare and evaluate. Thus, there is a need for more research on Pb exposure and its health effects on wild mammals, especially as carnivores and scavengers could be used as sentinels for ecosystem health.
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Affiliation(s)
- Helle B Hydeskov
- School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst Campus, Brackenhurst Lane, Southwell, NG25 0QF, UK
| | - Jon M Arnemo
- Department of Forestry and Wildlife Management, Faculty of Applied Ecology, Agricultural Sciences and Biotechnology, Inland Norway University of Applied Sciences, Campus Evenstad, Anne Evenstads Vei 80, 2480 Koppang, Norway
- Department of Wildlife, Fish, and Environmental Studies, Faculty of Forest Sciences, Swedish University of Agricultural Sciences, Skogsmarksgränd, 90736 Umeå, Sweden
| | - Chris Lloyd Mills
- School of Science and Technology, Nottingham Trent University, Clifton Campus, Clifton Lane, Nottingham, NG11 8NS, UK
| | - Louise K Gentle
- School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst Campus, Brackenhurst Lane, Southwell, NG25 0QF, UK
| | - Antonio Uzal
- School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst Campus, Brackenhurst Lane, Southwell, NG25 0QF, UK
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Andrade-Sánchez J, Mellink E, Riojas-López ME, Tremor S, Vanderplank SE. Site occupation and range expansion by the endangered, Mexican microendemic San Quintín Kangaroo Rat ( Dipodomys gravipes). J Mammal 2024; 105:168-174. [PMID: 38405057 PMCID: PMC10894624 DOI: 10.1093/jmammal/gyad113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 12/11/2023] [Indexed: 02/27/2024] Open
Abstract
The San Quintin Kangaroo Rat, a rodent species microendemic to the San Quintin-El Rosario region in Baja California that was considered potentially extinct in the wild, was recently rediscovered. This stimulated subsequent searches by us throughout its known distribution range and on sites that seemed suitable beyond its limits. We captured the species at 19 out of 42 localities surveyed, of which 6 are beyond its historically known distribution range, expanding the latter by ~60 km. Most sites occupied by the species occur on abandoned farmland in early ecological successional stages. Our data support that in the highly transformed agricultural landscape into which the region was converted in the 20th century, the species was able to survive undetected and colonize/recolonize sites once habitat became adequate after agricultural abandonment. This exhibits that the species is highly resilient and persisted as a metapopulation. Further research and conservation actions must be framed within context of the region's agricultural development.
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Affiliation(s)
- Jorge Andrade-Sánchez
- Departamento de Biología de la Conservación, Centro de Investigación Científica y de Educación Superior de Ensenada, Carretera Ensenada-Tijuana #3918, 22860 Ensenada, B.C., México
| | - Eric Mellink
- Departamento de Biología de la Conservación, Centro de Investigación Científica y de Educación Superior de Ensenada, Carretera Ensenada-Tijuana #3918, 22860 Ensenada, B.C., México
| | - Mónica E Riojas-López
- Departamento de Biología de la Conservación, Centro de Investigación Científica y de Educación Superior de Ensenada, Carretera Ensenada-Tijuana #3918, 22860 Ensenada, B.C., México
- Departamento de Ecología, Centro Universitario de Ciencias Biológicas y Agropecuarias, Universidad de Guadalajara, Ramón Padilla Sánchez #2100, Zapopan, Jalisco, México
| | - Scott Tremor
- San Diego Natural and History Museum, P.O. Box 121390, San Diego, CA 92112, United States
| | - Sula E Vanderplank
- Eco-Alianza de Loreto AC, 3419 Via Lido, Ste. 402, Newport Beach, CA 92663, United States
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Ramírez-Chaves HE, Morales-Martínez DM, Martínez-Medina D, Ossa-López PA, Rivera-Páez FA. Revising the diversity within the Dwarf Dog-faced Bat, Molossopstemminckii (Chiroptera, Molossidae), with the revalidation of the endangered Molossopsgriseiventer. Zookeys 2023; 1180:237-256. [PMID: 38312325 PMCID: PMC10838178 DOI: 10.3897/zookeys.1180.109091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Accepted: 09/06/2023] [Indexed: 02/06/2024] Open
Abstract
The genus Molossops includes two monotypic species of insectivore bats distributed in South America: Molossopsneglectus and Molossopstemminckii. Both can be differentiated, based on sizes, M.temminckii being smaller (forearm less than 33 mm). Despite being monotypic, at least two additional subspecies have been described for M.temminckii, of which M.temminckiigriseiventer from the inter-Andean Valley of the Magdalena River in Colombia might represent a valid taxon. To test the taxonomic status of M.t.griseiventer, we reviewed specimens of M.temminckii from cis- and trans-Andean localities in Colombia. We used Cytochrome-b and Cytochrome Oxidase I comparisons to test the phylogenetic position of cis- and trans-Andean samples and compared qualitative morphology, morphometric and bioacoustics. Our results show that M.t.griseiventer is differentiated from cis-Andean specimens, providing further evidence of its validity at the species level. Furthermore, M.temminckii (sensu stricto) is also distributed in Colombia, but both M.griseiventer and M.temminckii are allopatric, with the Andes acting as a barrier. The specific identity of the specimens from the Caribbean Region of Colombia needs a new evaluation, but our results clearly show that the diversity of Molossops is underestimated.
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Affiliation(s)
- Héctor E. Ramírez-Chaves
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia
| | - Darwin M. Morales-Martínez
- Centro de Museos, Museo de Historia Natural, Universidad de Caldas, Calle 65 No 26-10, Manizales, Caldas, Colombia
| | - Daniela Martínez-Medina
- Museum of Natural Science and Department of Biological Sciences, Louisiana State University, 119 Foster Hall 70803, Baton Rouge, Louisiana, USA
| | - Paula A. Ossa-López
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia
| | - Fredy A. Rivera-Páez
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Claustro de San Agustín Villa de Leyva, Colombia
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Bogdanov A, Tambovtseva V, Matveevsky S, Bakloushinskaya I. Speciation on the Roof of the World: Parallel Fast Evolution of Cryptic Mole Vole Species in the Pamir-Alay-Tien Shan Region. Life (Basel) 2023; 13:1751. [PMID: 37629608 PMCID: PMC10455883 DOI: 10.3390/life13081751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 08/03/2023] [Accepted: 08/14/2023] [Indexed: 08/27/2023] Open
Abstract
Speciation is not always accompanied by morphological changes; numerous cryptic closely related species were revealed using genetic methods. In natural populations of Ellobius tancrei (2n = 54-30) and E. alaicus (2n = 52-48) of the Pamir-Alay and Tien Shan, the chromosomal variability due to Robertsonian translocations has been revealed. Here, by comprehensive genetic analysis (karyological analyses as well as sequencing of mitochondrial genes, cytb and COI, and nuclear genes, XIST and IRBP) of E. alaicus and E. tancrei samples from the Inner Tien Shan, the Alay Valley, and the Pamir-Alay, we demonstrated fast and independent diversification of these species. We described an incompletely consistent polymorphism of the mitochondrial and nuclear markers, which arose presumably because of habitat fragmentation in the highlands, rapid karyotype changes, and hybridization of different intraspecific varieties and species. The most intriguing results are a low level of genetic distances calculated from mitochondrial and nuclear genes between some phylogenetic lines of E. tancrei and E. alaicus, as well significant species-specific chromosome variability in both species. The chromosomal rearrangements are what most clearly define species specificity and provide further diversification. The "mosaicism" and inconsistency in polymorphism patterns are evidence of rapid speciation in these mammals.
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Affiliation(s)
- Aleksey Bogdanov
- Koltzov Institute of Developmental Biology, Russian Academy of Sciences, 119334 Moscow, Russia;
| | - Valentina Tambovtseva
- Koltzov Institute of Developmental Biology, Russian Academy of Sciences, 119334 Moscow, Russia;
| | - Sergey Matveevsky
- Vavilov Institute of General Genetics, Russian Academy of Sciences, 119991 Moscow, Russia;
| | - Irina Bakloushinskaya
- Koltzov Institute of Developmental Biology, Russian Academy of Sciences, 119334 Moscow, Russia;
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Romanowski J, Dudek-Godeau D, Lesiński G. The Diversity of Small Mammals along a Large River Valley Revealed from Pellets of Tawny Owl Strix aluco. Biology (Basel) 2023; 12:1118. [PMID: 37627002 PMCID: PMC10451993 DOI: 10.3390/biology12081118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 08/08/2023] [Accepted: 08/08/2023] [Indexed: 08/27/2023]
Abstract
The Vistula River is one of the largest European semi-natural rivers of high ecological value that functions as an ecological corridor. To assess the structure of small mammal communities along the Vistula River, an analysis of the diet of an opportunistic predator, the tawny owl Strix aluco, was used. A total of 6355 individuals of 19 species were found, including 5 soricomorph species, 12 rodents, 1 carnivore, and 1 bat species. Tawny owls most frequently caught Apodemus agrarius, Clethrionomys glareolus, Apodemus flavicollis, and Microtus arvalis. Rodents dominated small mammal communities (90%), followed by soricomorphs (8%), and the share of Chiroptera was significant (2%). Using Ward's method in cluster analysis, three clusters of sites with similar mammal communities were identified. The cluster that included 17 study sites with the dominance of agriculture habitats was inhabited by diverse mammal communities with a high number of species. In the cluster composed of three suburban forest sites, mammal communities had the lowest diversity, although the high species richness and the highest shares of the forest species (A. flavicollis, C. glareolus, and Nyctalus noctula). Mammal communities in the cluster were composed of three urban sites were dominated by A. agrarius and M. arvalis. The study indicates the high species richness of small mammals in floodplains of the Vistula River and the adjacent areas in central Poland. The floodplain offers suitable habitats for species associated with forests, water bodies, agricultural land, and developed areas. The data collected confirms earlier model predictions about the presence of well-connected local populations of forest mammals along the Vistula River.
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Affiliation(s)
- Jerzy Romanowski
- Institute of Biological Sciences, Cardinal Stefan Wyszyński University, Wóycickiego 1/3, 01-938 Warsaw, Poland;
| | - Dorota Dudek-Godeau
- Institute of Biological Sciences, Cardinal Stefan Wyszyński University, Wóycickiego 1/3, 01-938 Warsaw, Poland;
| | - Grzegorz Lesiński
- Institute of Animal Science, Warsaw University of Life Sciences—SGGW, Ciszewskiego 8, 02-787 Warsaw, Poland;
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Ossa-López PA, Mancilla-Agrono LY, Micolta LFB, Ramírez-Chaves HE, Agudelo JDC, Muñoz-Leal S, Labruna MB, Lloyd V, Rivera-Páez FA. Morphological and molecular confirmation of Ornithodoros hasei (Schulze, 1935) (Acari: Argasidae) in Colombia. Ticks Tick Borne Dis 2023; 14:102142. [PMID: 36791538 DOI: 10.1016/j.ttbdis.2023.102142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 01/23/2023] [Accepted: 01/28/2023] [Indexed: 02/16/2023]
Abstract
A large number of tick species are proven vectors for the transmission of bacteria, protozoa, and viruses. Soft ticks (Acari: Argasidae) in South America have been found to be the most frequent carriers of borreliae of the relapsing fever group (RFG); however, there are several information gaps specially on the taxonomy and distribution of some tick species. Here, we used light microscopy, scanning electron microscopy, and PCR amplification of a fragment of the mitochondrial 16S rRNA gene to evaluate 174 larvae of Ornithodoros (Argasidae) collected from three bat species (Eptesicus orinocensis, Molossus rufus and Noctilio albiventris) in the Orinoquia Region of Colombia. The morphological and molecular results confirmed that all the analyzed larvae corresponded to Ornithodoros hasei. Comparisons of mitochondrial 16S rDNA sequences showed low genetic divergence (0% - 0.3%) between larvae of the Department of Arauca in the Orinoquia Region and higher genetic divergence (3.4 - 4.7%) in sequences from other American countries. Our work represents the most recent collection of this species in Colombia and provides a molecular evaluation for the first time. Moreover, a new association of O. hasei with bats such as E. orinocensis is documented. Considering the wide distribution of O. hasei in the American Continent, and its putative role as vector for Borrelia, integrative studies that involve morphological, morphometric, molecular data and experimental crosses are needed to determine if the higher genetic distances are associated with cryptic speciation, as detected in other tick complexes, or represent genetic divergences among geographically different populations of O. hasei.
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Affiliation(s)
- Paula A Ossa-López
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia; Doctorado en Ciencias, Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia
| | - Lorys Y Mancilla-Agrono
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia
| | - Lizeth Fernanda Banguero Micolta
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia
| | - Héctor E Ramírez-Chaves
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia; Centro de Museos, Museo de Historia Natural, Universidad de Caldas, Calle 65 No 26-10, Manizales, Caldas 170004, Colombia
| | - Juan David Carvajal Agudelo
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia
| | - Sebastián Muñoz-Leal
- Departamento de Ciencia Animal, Facultad de Ciencias Veterinarias, Universidad de Concepción, Av. Vicente Méndez 595, Casilla 537, Chillán, Ñuble, Chile
| | - Marcelo B Labruna
- Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo-USP, Av. Prof. Orlando Marques de Paiva, 87, Cidade Universitária, São Paulo, SP CEP 05508-000, Brazil
| | - Vett Lloyd
- Department of Biology, Mount Allison University, 35B York St. Sackville, New Brunswick E4L 1G7, Canada
| | - Fredy A Rivera-Páez
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, Manizales, Caldas 170004, Colombia.
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Benoit J, Dollman KN, Smith RMH, Manger PR. At the root of the mammalian mind: The sensory organs, brain and behavior of pre-mammalian synapsids. Prog Brain Res 2023; 275:25-72. [PMID: 36841570 DOI: 10.1016/bs.pbr.2022.10.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
All modern mammals are descendants of the paraphyletic non-mammaliaform Synapsida, colloquially referred to as the "mammal-like reptiles." It has long been assumed that these mammalian ancestors were essentially reptile-like in their morphology, biology, and behavior, i.e., they had a small brain, displayed simple behavior, and their sensory organs were unrefined compared to those of modern mammals. Recent works have, however, revealed that neurological, sensory, and behavioral traits previously considered typically mammalian, such as whiskers, enhanced olfaction, nocturnality, parental care, and complex social interactions evolved before the origin of Mammaliaformes, among the early-diverging "mammal-like reptiles." In contrast, an enlarged brain did not evolve immediately after the origin of mammaliaforms. As such, in terms of paleoneurology, the last "mammal-like reptiles" were not significantly different from the earliest mammaliaforms. The abundant data and literature published in the last 10 years no longer supports the "three pulses" scenario of synapsid brain evolution proposed by Rowe and colleagues in 2011, but supports the new "outside-in" model of Rodrigues and colleagues proposed in 2018, instead. As Mesozoic reptiles were becoming the dominant taxa within terrestrial ecosystems, synapsids gradually adapted to smaller body sizes and nocturnality. This resulted in a sensory revolution in synapsids as olfaction, audition, and somatosensation compensated for the loss of visual cues. This altered sensory input is aligned with changes in the brain, the most significant of which was an increase in relative brain size.
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McAllister CT, Hnida JA. A NEW EIMERIAN (APICOMPLEXA: EIMERIIDAE) FROM EASTERN MOLE, SCALOPUS AQUATICUS ( MAMMALIA: EULIPOTYPHLA: TALPIDAE), IN CENTRAL ARKANSAS, WITH ADDITIONAL INFORMATION ON CYCLOSPORA YATESI MCALLISTER, MOTRIUK-SMITH, AND KERR. J Parasitol 2023; 109:21-26. [PMID: 36808923 DOI: 10.1645/22-62] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023] Open
Abstract
The eastern mole, Scalopus aquaticus (L.), is a common inhabitant of loamy soils in Canada, the eastern United States, and Mexico. Seven coccidian parasites have been previously reported from S. aquaticus, including 3 cyclosporans and 4 eimerians from hosts taken in Arkansas and Texas. A single S. aquaticus, collected in February 2022 in central Arkansas, was found to be passing oocysts of 2 coccidians, a new species of Eimeria, and Cyclospora yatesiMcAllister, Motriuk-Smith, and Kerr, 2018. Oocysts of Eimeria brotheri n. sp. are ellipsoidal (sometimes ovoidal) with a smooth bilayered wall, measure 14.0 × 9.9 μm, and have a length/width (L/W) ratio of 1.5; both micropyle and oocyst residua are absent, but a single polar granule is present. Sporocysts are ellipsoidal and measure 8.1 × 4.6 μm, L/W 1.8; a flattened to knoblike Stieda body as well as a rounded sub-Stieda body are present. The sporocyst residuum is composed of an irregular mass of large granules. Additional metrical and morphological information is provided on oocysts of C. yatesi. This study demonstrates that although several coccidians were previously documented from this host, additional S. aquaticus should be examined for coccidians from Arkansas as well as other parts of its range.
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Affiliation(s)
- Chris T McAllister
- Science and Mathematics Division, Eastern Oklahoma State College, Idabel, Oklahoma 74745
| | - John A Hnida
- Department of Microbiology and Immunology, Midwestern University, Glendale, Arizona 85308
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10
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Butti M, Pacca L, Santos P, Alonso AC, Buss G, Ludwig G, Jerusalinsky L, Martins AB. Habitat loss estimation for assessing terrestrial mammalian species extinction risk: an open data framework. PeerJ 2022; 10:e14289. [PMID: 36530404 PMCID: PMC9753759 DOI: 10.7717/peerj.14289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 10/02/2022] [Indexed: 12/14/2022] Open
Abstract
Terrestrial mammals face a severe crisis of habitat loss worldwide. Therefore, assessing information on habitat loss throughout different time periods is crucial for assessing species' conservation statuses based on the IUCN Red List system. To support the national extinction risk assessment in Brazil (2016-2022), we developed a script that uses the MapBiomas Project 6.0 data source of land cover and land use (annual maps at 30 m scale) within the Google Earth Engine (GEE) platform to calculate habitat loss. We defined suitable habitats from the MapBiomas Project land cover classification for 190 mammalian taxa, according to each species range map and ecological characteristics. We considered a period of three generation lengths to assess habitat loss in accordance with the Red List assessment criteria. We used the script to estimate changes in available habitat throughout the analyzed period within the species' known ranges. The results indicated that habitat loss occurred within 94.3% of the analyzed taxa range, with the Carnivora order suffering the greatest habitat loss, followed by the Cingulata order. These analyses may be decisive for applying criteria, defining categories during the assessment of at least 17 species (9%), enriching discussions, and raising new questions for several other species. We considered the outcome of estimating habitat loss for various taxa when applying criterion A, which refers to population reduction, thus supporting more accurate inferences about past population declines.
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Affiliation(s)
- Mariella Butti
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros/CENAP, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Atibaia, São Paulo, Brazil
| | - Luciana Pacca
- Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros/CPB, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Cabedelo, Paraiba, Brazil
| | - Paloma Santos
- Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros/CPB, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Cabedelo, Paraiba, Brazil,Instituto Nacional da Mata Atlântica/INMA, Santa Teresa, Espírito Santo, Brazil,Instituto de Pesquisa e Conservação de Tamanduás no Brasil, Ilhéus, Bahia, Brazil
| | - André C. Alonso
- Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros/CPB, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Cabedelo, Paraiba, Brazil
| | - Gerson Buss
- Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros/CPB, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Cabedelo, Paraiba, Brazil
| | - Gabriela Ludwig
- Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros/CPB, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Cabedelo, Paraiba, Brazil
| | - Leandro Jerusalinsky
- Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros/CPB, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Cabedelo, Paraiba, Brazil
| | - Amely B. Martins
- Centro Nacional de Pesquisa e Conservação de Primatas Brasileiros/CPB, Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio, Cabedelo, Paraiba, Brazil
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11
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Harano T, Asahara M. The anteriorization of tooth position underlies the atavism of tooth morphology: Insights into the morphogenesis of mammalian molars. Evolution 2022; 76:2986-3000. [PMID: 36200621 DOI: 10.1111/evo.14637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 08/29/2022] [Accepted: 09/15/2022] [Indexed: 01/22/2023]
Abstract
The evolution and development of complex molars as a key innovation in mammals have long been of interest yet remain poorly understood. With reference to century-old theories and modern findings, we focused on the teeth of pinnipeds (Carnivora) and cetaceans (Cetartiodactyla), which are morphologically simple compared with those of other mammals, and thus can be considered a reversal toward the ancestral state of nonmammalian synapsids. By reconstructing the evolutionary history of tooth complexity for the phylogenies of Carnivora and Cetartiodactyla, we established that a secondary evolution of simple teeth from more complex molars has occurred independently multiple times. Our phylogenetic comparative analyses showed that a simplification in tooth morphology was correlated with a more anterior dentition position relative to the component bones of the upper jaw in both Carnivora and Cetartiodactyla. These results suggest that the anterior shift of tooth position relative to the morphogenetic fields present in the jaw contributed to the evolutionary simplification in molar morphology. Our findings provide insights into the developmental basis of complex mammalian dentition.
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Affiliation(s)
- Tomohiro Harano
- Division of Liberal Arts and Sciences, Aichi Gakuin University, Nisshin, 470-0195, Japan
| | - Masakazu Asahara
- Division of Liberal Arts and Sciences, Aichi Gakuin University, Nisshin, 470-0195, Japan
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12
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Tanaka Y. Rostrum morphology and feeding strategy of the baleen whale indicate that right whales and pygmy right whales became skimmers independently. R Soc Open Sci 2022; 9:221353. [PMID: 36425522 PMCID: PMC9682309 DOI: 10.1098/rsos.221353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 11/02/2022] [Indexed: 06/16/2023]
Abstract
Baleen whales have lost their functional teeth and begun to use their baleen plates to feed on small prey. Modern baleen whales exhibit different types of feeding strategies, such as lunging, skimming and so on. The evolution of feeding strategy in the Chaeomysticeti is an important step in considering niche partitioning and diversification, feeding efficiency and gigantism, and evolution and extinction. This study analyses the rostrum morphology to test the hypothesis that specific rostral morphologies facilitate special feeding strategies, using modern species and their observed feeding strategies. By this means, the convergence of rostral morphology can be recognized in the closest groups in the morphospace. As a result, the two linages (Balaenidae and Caperea marginata) are recognized to have convergent rostral morphology. In addition, an early member of the Chaeomysticeti, Yamatocetus canaliculatus, and most fossil species are plotted in or close to the cluster of lunge feeders. The original feeding strategy of the Chaeomysticeti could be more similar to lunge feeding than to skim feeding. Fossil relatives of the two linages showing transitional conditions indicate that they shifted to skim feeding independently. The evolution of the feeding strategy of the Chaeomysticeti is possibly more complex than that was thought.
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Affiliation(s)
- Yoshihiro Tanaka
- Osaka Museum of Natural History, Nagai Park 1-23, Higashi-Sumiyoshi-ku, Osaka 546-0034, Japan
- Hokkaido University Museum, Kita 10, Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
- Numata Fossil Museum, 2-7-49, Minami 1, Numata town, Hokkaido 078-2225, Japan
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13
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Busi A, Ospina-Pérez EM, Rodríguez-Hurtado C, Mejía-Fontecha IY, Ossa-López PA, Rivera-Páez FA, Ramírez-Chaves HE. Infestation, histology, and molecular confirmation of Sarcoptes scabiei in an Andean porcupine ( Coendou quichua) from the Central Andes of Colombia. Int J Parasitol Parasites Wildl 2022; 18:266-272. [PMID: 35814637 PMCID: PMC9260439 DOI: 10.1016/j.ijppaw.2022.06.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Revised: 06/29/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
Sarcoptic mange is a highly contagious, worldwide disease that affects the skin of mammals, including humans. It is caused by the mite Sarcoptes scabiei, however, the information available in wild mammal populations in the world, and particularly in Colombia is limited. Here, we document a new case of sarcoptic mange in an Andean porcupine (Coendou quichua) from the Andean region of Colombia. We morphologically and molecularly confirmed the mite as S. scabiei and documented the histopathology associated with scabies, and show the different stages of the life cycle of S. scabiei from the Andean porcupine skin samples. Our review of reports of additional cases of scabies in wild mammal species in South America showed 15 species, mostly carnivores, artiodactyls, and rodents. Considering the limited information in Colombia, it is urgent to evaluate the risk of this condition on mammals which would contribute to the epidemiological knowledge and the potential implications of sarcoptic mange in the ecology and conservation of wild mammals in the country.
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Affiliation(s)
- Ana Busi
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, 170004, Manizales, Caldas, Colombia
- Doctorado en Ciencias Agrarias, Facultad de Ciencias Agropecuarias, Universidad de Caldas, Manizales, Caldas, Colombia
- Universidad de Caldas, Calle 65 No. 26-10, 170004, Manizales, Caldas, Colombia
| | - Erika Mayerly Ospina-Pérez
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, 170004, Manizales, Caldas, Colombia
- Doctorado en Ciencias – Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Manizales, Caldas, Colombia
| | - Caterine Rodríguez-Hurtado
- Professional Universitaria, Parque Nacional Natural Selva de Florencia, Parques Nacionales Naturales de Colombia, Corregimiento de Florencia, Samaná, Caldas, Colombia
| | - Ingrith Y. Mejía-Fontecha
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, 170004, Manizales, Caldas, Colombia
- Centro de Museos, Museo de Historia Natural, Universidad de Caldas, Calle 58 No. 21-50, 170004, Manizales, Caldas, Colombia
| | - Paula A. Ossa-López
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, 170004, Manizales, Caldas, Colombia
- Doctorado en Ciencias – Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Manizales, Caldas, Colombia
| | - Fredy A. Rivera-Páez
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, 170004, Manizales, Caldas, Colombia
| | - Héctor E. Ramírez-Chaves
- Grupo de Investigación en Genética, Biodiversidad y Manejo de Ecosistemas (GEBIOME), Departamento de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Universidad de Caldas, Calle 65 No. 26-10, 170004, Manizales, Caldas, Colombia
- Centro de Museos, Museo de Historia Natural, Universidad de Caldas, Calle 58 No. 21-50, 170004, Manizales, Caldas, Colombia
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de Ferran V, Figueiró HV, de Jesus Trindade F, Smith O, Sinding MHS, Trinca CS, Lazzari GZ, Veron G, Vianna JA, Barbanera F, Kliver S, Serdyukova N, Bulyonkova T, Ryder OA, Gilbert MTP, Koepfli KP, Eizirik E. Phylogenomics of the world's otters. Curr Biol 2022; 32:3650-3658.e4. [PMID: 35779528 DOI: 10.1016/j.cub.2022.06.036] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 04/18/2022] [Accepted: 06/13/2022] [Indexed: 10/17/2022]
Abstract
Comparative whole-genome analyses hold great power to illuminate commonalities and differences in the evolution of related species that share similar ecologies. The mustelid subfamily Lutrinae includes 13 currently recognized extant species of otters,1-5 a semiaquatic group whose evolutionary history is incompletely understood. We assembled a dataset comprising 24 genomes from all living otter species, 14 of which were newly sequenced. We used this dataset to infer phylogenetic relationships and divergence times, to characterize patterns of genome-wide genealogical discordance, and to investigate demographic history and current genomic diversity. We found that genera Lutra, Aonyx, Amblonyx, and Lutrogale form a coherent clade that should be synonymized under Lutra, simplifying the taxonomic structure of the subfamily. The poorly known tropical African Aonyx congicus and the more widespread Aonyx capensis were found to be reciprocally monophyletic (having diverged 440,000 years ago), supporting the validity of the former as a distinct species. We observed variable changes in effective population sizes over time among otters within and among continents, although several species showed similar trends of expansions and declines during the last 100,000 years. This has led to different levels of genomic diversity assessed by overall heterozygosity, genome-wide SNV density, and run of homozygosity burden. Interestingly, there were cases in which diversity metrics were consistent with the current threat status (mostly based on census size), highlighting the potential of genomic data for conservation assessment. Overall, our results shed light on otter evolutionary history and provide a framework for further in-depth comparative genomic studies targeting this group.
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Affiliation(s)
- Vera de Ferran
- School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681, prédio 12C, sala 134, Porto Alegre, Rio Grande do Sul 90619-900, Brazil
| | - Henrique Vieira Figueiró
- Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, 3001 Connecticut Avenue NW, Washington, DC 20008, USA
| | - Fernanda de Jesus Trindade
- School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681, prédio 12C, sala 134, Porto Alegre, Rio Grande do Sul 90619-900, Brazil
| | - Oliver Smith
- Center for Evolutionary Hologenomics, The GLOBE Institute - University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1353, Denmark
| | - Mikkel-Holger S Sinding
- Center for Evolutionary Hologenomics, The GLOBE Institute - University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1353, Denmark
| | - Cristine S Trinca
- School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681, prédio 12C, sala 134, Porto Alegre, Rio Grande do Sul 90619-900, Brazil
| | - Gabriele Zenato Lazzari
- School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681, prédio 12C, sala 134, Porto Alegre, Rio Grande do Sul 90619-900, Brazil
| | - Géraldine Veron
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, CP 51, 75231 Paris Cedex 5, France
| | - Juliana A Vianna
- Millennium Institute Center for Genome Regulation (CRG), Millennium Institute Biodiversity of Antarctic and Subantarctic Ecosystems (BASE), Departamento de Ecosistemas y Medio Ambiente, Facultad de Agronomía e Ingeniería Forestal, Pontificia Universidad Católica de Chile, Av. Vicuna Mackenna 4860, Santiago 782-0436, Chile
| | - Filippo Barbanera
- Department of Biology, University of Pisa, Via A. Volta 4, 56126 Pisa, Italy
| | - Sergei Kliver
- Institute of Molecular and Cellular Biology SB RAS, 8/2 Acad. Lavrentiev Ave, 630090 Novosibirsk, Russia
| | - Natalia Serdyukova
- Institute of Molecular and Cellular Biology SB RAS, 8/2 Acad. Lavrentiev Ave, 630090 Novosibirsk, Russia
| | - Tatiana Bulyonkova
- A. P. Ershov Institute of Informatics Systems SB RAS, 6 Acad. Lavrentiev Ave, 630090 Novosibirsk, Russia
| | - Oliver A Ryder
- San Diego Zoo Institute for Conservation Research, Escondido, CA 92027, USA; Department of Evolution, Behavior, and Ecology, Division of Biology, University of California, San Diego, La Jolla, CA 92093, USA
| | - M Thomas P Gilbert
- Center for Evolutionary Hologenomics, The GLOBE Institute - University of Copenhagen, Øster Farimagsgade 5A, Copenhagen 1353, Denmark; University Museum, NTNU, Trondheim, Norway
| | - Klaus-Peter Koepfli
- Smithsonian Conservation Biology Institute, Center for Species Survival, National Zoological Park, 3001 Connecticut Avenue NW, Washington, DC 20008, USA; Smithsonian-Mason School of Conservation, George Mason University, Front Royal, VA 22630, USA.
| | - Eduardo Eizirik
- School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681, prédio 12C, sala 134, Porto Alegre, Rio Grande do Sul 90619-900, Brazil; Instituto Pró-Carnívoros, Av. Horácio Netto, 1030 - Parque Edmundo Zanoni, Atibaia, São Paulo 12945-010, Brazil.
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15
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Marsh CJ, Sica YV, Burgin CJ, Dorman WA, Anderson RC, del Toro Mijares I, Vigneron JG, Barve V, Dombrowik VL, Duong M, Guralnick R, Hart JA, Maypole JK, McCall K, Ranipeta A, Schuerkmann A, Torselli MA, Lacher T, Mittermeier RA, Rylands AB, Sechrest W, Wilson DE, Abba AM, Aguirre LF, Arroyo‐Cabrales J, Astúa D, Baker AM, Braulik G, Braun JK, Brito J, Busher PE, Burneo SF, Camacho MA, Cavallini P, de Almeida Chiquito E, Cook JA, Cserkész T, Csorba G, Cuéllar Soto E, da Cunha Tavares V, Davenport TRB, Deméré T, Denys C, Dickman CR, Eldridge MDB, Fernandez‐Duque E, Francis CM, Frankham G, Franklin WL, Freitas T, Friend JA, Gadsby EL, Garbino GST, Gaubert P, Giannini N, Giarla T, Gilchrist JS, Gongora J, Goodman SM, Gursky‐Doyen S, Hackländer K, Hafner MS, Hawkins M, Helgen KM, Heritage S, Hinckley A, Hintsche S, Holden M, Holekamp KE, Honeycutt RL, Huffman BA, Humle T, Hutterer R, Ibáñez Ulargui C, Jackson SM, Janecka J, Janecka M, Jenkins P, Juškaitis R, Juste J, Kays R, Kilpatrick CW, Kingston T, Koprowski JL, Kryštufek B, Lavery T, Lee TE, Leite YLR, Novaes RLM, Lim BK, Lissovsky A, López‐Antoñanzas R, López‐Baucells A, MacLeod CD, Maisels FG, Mares MA, Marsh H, Mattioli S, Meijaard E, Monadjem A, Morton FB, Musser G, Nadler T, Norris RW, Ojeda A, Ordóñez‐Garza N, Pardiñas UFJ, Patterson BD, Pavan A, Pennay M, Pereira C, Prado J, Queiroz HL, Richardson M, Riley EP, Rossiter SJ, Rubenstein DI, Ruelas D, Salazar‐Bravo J, Schai‐Braun S, Schank CJ, Schwitzer C, Sheeran LK, Shekelle M, Shenbrot G, Soisook P, Solari S, Southgate R, Superina M, Taber AB, Talebi M, Taylor P, Vu Dinh T, Ting N, Tirira DG, Tsang S, Turvey ST, Valdez R, Van Cakenberghe V, Veron G, Wallis J, Wells R, Whittaker D, Williamson EA, Wittemyer G, Woinarski J, Zinner D, Upham NS, Jetz W. Expert range maps of global mammal distributions harmonised to three taxonomic authorities. J Biogeogr 2022; 49:979-992. [PMID: 35506011 PMCID: PMC9060555 DOI: 10.1111/jbi.14330] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Revised: 01/05/2022] [Accepted: 01/13/2022] [Indexed: 06/01/2023]
Abstract
AIM Comprehensive, global information on species' occurrences is an essential biodiversity variable and central to a range of applications in ecology, evolution, biogeography and conservation. Expert range maps often represent a species' only available distributional information and play an increasing role in conservation assessments and macroecology. We provide global range maps for the native ranges of all extant mammal species harmonised to the taxonomy of the Mammal Diversity Database (MDD) mobilised from two sources, the Handbook of the Mammals of the World (HMW) and the Illustrated Checklist of the Mammals of the World (CMW). LOCATION Global. TAXON All extant mammal species. METHODS Range maps were digitally interpreted, georeferenced, error-checked and subsequently taxonomically aligned between the HMW (6253 species), the CMW (6431 species) and the MDD taxonomies (6362 species). RESULTS Range maps can be evaluated and visualised in an online map browser at Map of Life (mol.org) and accessed for individual or batch download for non-commercial use. MAIN CONCLUSION Expert maps of species' global distributions are limited in their spatial detail and temporal specificity, but form a useful basis for broad-scale characterizations and model-based integration with other data. We provide georeferenced range maps for the native ranges of all extant mammal species as shapefiles, with species-level metadata and source information packaged together in geodatabase format. Across the three taxonomic sources our maps entail, there are 1784 taxonomic name differences compared to the maps currently available on the IUCN Red List website. The expert maps provided here are harmonised to the MDD taxonomic authority and linked to a community of online tools that will enable transparent future updates and version control.
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Affiliation(s)
- Charles J. Marsh
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Yanina V. Sica
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Connor J. Burgin
- Department of BiologyUniversity of New MexicoAlbuquerqueNew MexicoUSA
| | - Wendy A. Dorman
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Robert C. Anderson
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Isabel del Toro Mijares
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Jessica G. Vigneron
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Vijay Barve
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFloridaUSA
| | - Victoria L. Dombrowik
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Michelle Duong
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Robert Guralnick
- Florida Museum of Natural HistoryUniversity of FloridaGainesvilleFloridaUSA
| | - Julie A. Hart
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
- New York Natural Heritage ProgramState University of New York College of Environmental Science and ForestryAlbanyNew YorkUSA
| | - J. Krish Maypole
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Kira McCall
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Ajay Ranipeta
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Anna Schuerkmann
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Michael A. Torselli
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
| | - Thomas Lacher
- Department of Ecology and Conservation BiologyTexas A&M UniversityCollege StationTexasUSA
- Re:wildAustinTexasUSA
| | | | | | | | - Don E. Wilson
- National Museum of Natural HistorySmithsonian InstitutionWashingtonDistrict of ColumbiaUSA
| | - Agustín M. Abba
- Centro de Estudios Parasitológicos y de Vectores (CEPAVE‐UNLP‐CONICET)La Plata, Buenos AiresArgentina
| | - Luis F. Aguirre
- Centro de Biodiversidad y GenéticaUniversidad Mayor de San SimónCochabambaBolivia
| | | | - Diego Astúa
- Departamento de ZoologiaUniversidade Federal de PernambucoRecifePernambucoBrazil
| | - Andrew M. Baker
- School of Biology and Environmental Science, Faculty of ScienceQueensland University of TechnologyBrisbaneQueenslandAustralia
- Biodiversity and Geosciences ProgramQueensland MuseumBrisbaneQueenslandAustralia
| | - Gill Braulik
- School of BiologyUniversity of St. AndrewsSt. Andrews, FifeUK
| | | | - Jorge Brito
- Instituto Nacional de Biodiversidad (INABIO)QuitoEcuador
| | - Peter E. Busher
- College of General StudiesBoston UniversityBostonMassachusettsUSA
| | - Santiago F. Burneo
- Sección Mastozoología, Museo de Zoología, Facultad de Ciencias Exactas y NaturalesPontificia Universidad Católica del EcuadorQuitoEcuador
| | - M. Alejandra Camacho
- Sección Mastozoología, Museo de Zoología, Facultad de Ciencias Exactas y NaturalesPontificia Universidad Católica del EcuadorQuitoEcuador
| | | | | | - Joseph A. Cook
- Museum of Southwestern Biology and Department of BiologyUniversity of New MexicoAlbuquerqueNew MexicoUSA
| | - Tamás Cserkész
- Department of ZoologyHungarian Natural History MuseumBudapestHungary
| | - Gábor Csorba
- Department of ZoologyHungarian Natural History MuseumBudapestHungary
| | | | - Valeria da Cunha Tavares
- Vale Technological InstituteBelémParáBrazil
- Laboratório de Mamíferos, Departamento de Sistemática e Ecologia, CCEN/DSEUniversidade Federal da ParaíbaJoão PessoaPBBrazil
| | - Tim R. B. Davenport
- Species Conservation & Science (Africa)Wildlife Conservation Society (WCS)ArushaTanzania
| | | | - Christiane Denys
- Institut de Systématique, Evolution, Biodiversité (ISYEB)Muséum national d'Histoire naturelle (CNRS)ParisFrance
| | - Christopher R. Dickman
- Desert Ecology Research Group, School of Life and Environmental SciencesThe University of SydneySydneyNew South WalesAustralia
| | - Mark D. B. Eldridge
- Australian Museum Research InstituteAustralian MuseumSydneyNew South WalesAustralia
| | - Eduardo Fernandez‐Duque
- Department of Anthropology and School of the EnvironmentYale UniversityNew HavenConnecticutUSA
| | - Charles M. Francis
- Canadian Wildlife ServiceEnvironment and Climate Change CanadaOttawaOntarioCanada
| | - Greta Frankham
- Australian Museum Research InstituteAustralian MuseumSydneyNew South WalesAustralia
| | - William L. Franklin
- Deparment of Natural Resource Ecology and EnvironmentIowa State UniversityAmesIowaUSA
| | - Thales Freitas
- Departamento de GenéticaUniversidade Federal do Rio Grande do SulPorto AlegreRio Grande do SulBrazil
| | - J. Anthony Friend
- Department of BiodiversityConservation and AttractionsAlbanyWestern AustraliaAustralia
| | | | | | - Philippe Gaubert
- Laboratoire Évolution & Diversité BiologiqueUniversité Toulouse III Paul SabatierToulouseFrance
| | - Norberto Giannini
- Unidad Ejecutora LilloCONICET ‐ Fundación Miguel LilloSan Miguel de Tucumán, TucumánArgentina
| | - Thomas Giarla
- Department of BiologySiena CollegeLoudonvilleNew YorkUSA
| | | | - Jaime Gongora
- Sydney School of Veterinary Science, Faculty of ScienceThe University of SydneySydneyNew South WalesAustralia
| | - Steven M. Goodman
- Negaunee Integrative Research Center, Field Museum of Natural HistoryChicagoIllinoisUSA
| | | | - Klaus Hackländer
- Institute of Wildlife Biology and Game ManagementUniversity of Natural Resources and Life SciencesWienAustria
| | - Mark S. Hafner
- Museum of Natural ScienceLouisiana State UniversityBaton RougeLouisianaUSA
| | - Melissa Hawkins
- National Museum of Natural HistorySmithsonian InstitutionWashingtonDistrict of ColumbiaUSA
| | - Kristofer M. Helgen
- Australian Museum Research InstituteAustralian MuseumSydneyNew South WalesAustralia
| | - Steven Heritage
- Duke Lemur Center, Museum of Natural HistoryDuke UniversityDurhamNorth CarolinaUSA
| | | | | | - Mary Holden
- Department of MammalogyAmerican Museum of Natural HistoryNew YorkNew YorkUSA
| | - Kay E. Holekamp
- Department of Integrative BiologyMichigan State UniversityEast LansingMichiganUSA
| | | | | | - Tatyana Humle
- Durrell Institute of Conservation and EcologySchool of Anthropology and Conservation, University of KentCanterburyUK
| | | | | | | | - Jan Janecka
- Department of Biological SciencesDuquesne UniversityPittsburghPennsylvaniaUSA
| | - Mary Janecka
- Department of Biological SciencesUniversity of PittsburghPittsburghPennsylvaniaUSA
| | - Paula Jenkins
- Mammal Group, Vertebrates DivisionDepartment of Life Sciences, The Natural History MuseumLondonUK
| | | | | | - Roland Kays
- North Carolina Museum of Natural SciencesRaleighNorth CarolinaUSA
| | | | - Tigga Kingston
- Department of Biological SciencesTexas Tech UniversityLubbockTexasUSA
| | | | | | - Tyrone Lavery
- Fenner School of Environment and SocietyThe Australian National UniversityActonAustralian Capital TerritoryAustralia
| | - Thomas E. Lee
- Department of BiologyAbilene Christian UniversityAbileneTexasUSA
| | - Yuri L. R. Leite
- Departamento de Ciências BiológicasUniversidade Federal do Espírito SantoVitóriaEspiríto SantoBrazil
| | | | - Burton K. Lim
- Department of Natural HistoryRoyal Ontario MuseumTorontoOntarioCanada
| | | | - Raquel López‐Antoñanzas
- Institut des Sciences de l'Évolution de Montpellier (ISE‐M, UMR 5554, UM/CNRS/IRD/EPHE)MontpellierFrance
| | | | | | - Fiona G. Maisels
- Wildlife Conservation SocietyGlobal Conservation ProgramNew YorkNew YorkUSA
- Faculty of Natural SciencesUniversity of StirlingStirlingUK
| | | | - Helene Marsh
- Division of Tropical Environments and SocietiesCentre for Tropical Water and Aquatic Ecosystem Research, James Cook UniversityTownsvilleQueenslandAustralia
| | - Stefano Mattioli
- Research Unit of Behavioural Ecology, Ethology and Wildlife Management, Department of Life SciencesUniversity of SienaSienaItaly
| | - Erik Meijaard
- Borneo FuturesBandar Seri BegawanBABrunei Darussalam
| | - Ara Monadjem
- Department of Biological SciencesUniversity of EswatiniKwaluseniEswatini
- Department of Zoology & Entomology, Mammal Research InstituteUniversity of PretoriaPretoriaSouth Africa
| | | | - Grace Musser
- Jackson School of GeosciencesUniversity of Texas at AustinAustinTexasUSA
| | - Tilo Nadler
- Cuc Phuong CommuneNho Quan DistrictNinh BInh, ProvinceVietnam
| | - Ryan W. Norris
- Evolution, Ecology and Organismal BiologyThe Ohio State UniversityLimaOhioUSA
| | - Agustina Ojeda
- Instituto Argentino de Zonas Áridas (IADIZA)‐CCT Mendoza‐CONICETMendozaArgentina
| | | | | | - Bruce D. Patterson
- Negaunee Integrative Research Center, Field Museum of Natural HistoryChicagoIllinoisUSA
| | - Ana Pavan
- Universidade de São PauloSão PauloBrazil
| | - Michael Pennay
- NSW National Parks and Wildlife ServiceQueanbeyanNew South WalesAustralia
| | | | | | - Helder L. Queiroz
- Instituto de Desenvolvimento Sustentável Mamirauá – IDSMTeféAmazonasBrazil
| | | | - Erin P. Riley
- Department of AnthropologySan Diego State UniversitySan DiegoCaliforniaUSA
| | - Stephen J. Rossiter
- School of Biological and Chemical SciencesQueen Mary University of LondonLondonUK
| | - Daniel I. Rubenstein
- Department of Ecology and Evolutionary BiologyPrinceton UniversityPrincetonNew JerseyUSA
| | - Dennisse Ruelas
- Museo de Historia NaturalUniversidad Nacional Mayor de San Marcos, LimaLimaPeru
- Institut des Sciences de l'Evolution (ISEM, UMR 5554 CNRS‐IRD‐UM)Université de MontpellierMontpellier Cedex 5France
| | | | - Stéphanie Schai‐Braun
- Institute of Wildlife Biology and Game ManagementUniversity of Natural Resources and Life SciencesViennaAustria
| | - Cody J. Schank
- Re:wildAustinTexasUSA
- Department of Geography and the EnvironmentThe University of Texas at AustinAustinTexasUSA
| | | | - Lori K. Sheeran
- Department of Anthropology and Museum StudiesCentral Washington UniversityEllensburgWAUSA
| | - Myron Shekelle
- Department of AnthropologyWestern Washington UniversityBellinghamWAUSA
| | - Georgy Shenbrot
- Mitrani Department of Desert EcologyJacob Blaustein Institutes for Desert ResearchBen‐Gurion University of the NegevMidreshet Ben‐GurionIsrael
| | - Pipat Soisook
- Princess Maha Chakri Sirindhorn Natural History MuseumPrince of Songkhla UniversityHatyai, SongkhlaThailand
| | - Sergio Solari
- Instituto de BiologíaUniversidad de AntioquiaMedellínColombia
| | | | - Mariella Superina
- IMBECU, CCT CONICET Mendoza – UNCuyoParque Gral. San MartínMendozaArgentina
| | - Andrew B. Taber
- Forestry DivisionFood and Agriculture Organization of the United NationsRomeItaly
| | - Maurício Talebi
- Laboratório de Ecologia e Conservação da NaturezaDeptartamento de Ciências AmbientaisUniversidade Federal de São Paulo (UNIFESP) ‐ Campus Diadema, DiademaSão PauloBrazil
| | | | - Thong Vu Dinh
- Institute of Ecology and Biological ResourcesVietnam Academy of Science and TechnologyHanoiVietnam
| | - Nelson Ting
- Department of AnthropologyUniversity of OregonEugeneOregonUSA
| | | | - Susan Tsang
- Department of MammalogyAmerican Museum of Natural HistoryNew YorkNew YorkUSA
| | | | - Raul Valdez
- Department of Fish, Wildlife, and Conservation EcologyNew Mexico State UniversityLas CrucesNew MexicoUSA
| | - Victor Van Cakenberghe
- Laboratory for Functional Morphology, Biology DepartmentUniversity of Antwerp, Campus Drie EikenAntwerpen (Wilrijk)Belgium
| | - Geraldine Veron
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRSSorbonne Université, EPHE, Université des AntillesParisFrance
| | | | - Rod Wells
- Biological Sciences, College of Science and EngineeringFlinders UniversityAdelaideSouth AustraliaAustralia
| | - Danielle Whittaker
- BEACON Center for the Study of Evolution in ActionMichigan State UniversityEast LansingMichiganUSA
| | | | - George Wittemyer
- Department of Fish, Wildlife and Conservation BiologyColorado State UniversityFort CollinsColoradoUSA
| | - John Woinarski
- Research Institute for the Environment and LivelihoodsCharles Darwin UniversityCasuarinaNorthern TerritoryAustralia
| | - Dietmar Zinner
- German Primate Center (DPZ)Leibniz Institute for Primate ResearchGöttingenGermany
| | - Nathan S. Upham
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
- School of Life SciencesArizona State UniversityTempeArizonaUSA
| | - Walter Jetz
- Department of Ecology and Evolutionary BiologyYale UniversityNew HavenConnecticutUSA
- Center for Biodiversity and Global ChangeYale UniversityNew HavenConnecticutUSA
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Krause DW, Hoffmann S, Lyson TR, Dougan LG, Petermann H, Tecza A, Chester SGB, Miller IM. New Skull Material of Taeniolabis taoensis (Multituberculata, Taeniolabididae) from the Early Paleocene (Danian) of the Denver Basin, Colorado. J MAMM EVOL 2021; 28:1083-1143. [PMID: 34924738 PMCID: PMC8667543 DOI: 10.1007/s10914-021-09584-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/27/2021] [Indexed: 11/26/2022]
Abstract
Taeniolabis taoensis is an iconic multituberculate mammal of early Paleocene (Puercan 3) age from the Western Interior of North America. Here we report the discovery of significant new skull material (one nearly complete cranium, two partial crania, one nearly complete dentary) of T. taoensis in phosphatic concretions from the Corral Bluffs study area, Denver Formation (Danian portion), Denver Basin, Colorado. The new skull material provides the first record of the species from the Denver Basin, where the lowest in situ specimen occurs in river channel deposits ~730,000 years after the Cretaceous-Paleogene boundary, roughly coincident with the first appearance of legumes in the basin. The new material, in combination with several previously described and undescribed specimens from the Nacimiento Formation of the San Juan Basin, New Mexico, is the subject of detailed anatomical study, aided by micro-computed tomography. Our analyses reveal many previously unknown aspects of skull anatomy. Several regions (e.g., anterior portions of premaxilla, orbit, cranial roof, occiput) preserved in the Corral Bluffs specimens allow considerable revision of previous reconstructions of the external cranial morphology of T. taoensis. Similarly, anatomical details of the ascending process of the dentary are altered in light of the new material. Although details of internal cranial anatomy (e.g., nasal and endocranial cavities) are difficult to discern in the available specimens, we provide, based on UCMP 98083 and DMNH.EPV 95284, the best evidence to date for inner ear structure in a taeniolabidoid multituberculate. The cochlear canal of T. taoensis is elongate and gently curved and the vestibule is enlarged, although to a lesser degree than in Lambdopsalis.
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Affiliation(s)
- David W. Krause
- Department of Earth Sciences, Denver Museum of Nature & Science, 2001 Colorado Boulevard, Denver, CO 80205 USA
- Department of Anatomical Sciences, Stony Brook University, Stony Brook, NY 11794-8081 USA
| | - Simone Hoffmann
- Department of Anatomy, College of Osteopathic Medicine, New York Institute of Technology, Old Westbury, NY 11568 USA
| | - Tyler R. Lyson
- Department of Earth Sciences, Denver Museum of Nature & Science, 2001 Colorado Boulevard, Denver, CO 80205 USA
| | - Lindsay G. Dougan
- Department of Earth Sciences, Denver Museum of Nature & Science, 2001 Colorado Boulevard, Denver, CO 80205 USA
| | - Holger Petermann
- Department of Earth Sciences, Denver Museum of Nature & Science, 2001 Colorado Boulevard, Denver, CO 80205 USA
| | - Adrienne Tecza
- Department of Earth Sciences, Denver Museum of Nature & Science, 2001 Colorado Boulevard, Denver, CO 80205 USA
| | - Stephen G. B. Chester
- Department of Anthropology, Brooklyn College, City University of New York, 2900 Bedford Avenue, Brooklyn, NY 11210 USA
- Department of Anthropology, The Graduate Center, City University of New York, 365 Fifth Avenue, New York, NY 10016 USA
- New York Consortium in Evolutionary Primatology, 200 Central Park West, New York, NY 10024 USA
| | - Ian M. Miller
- Department of Earth Sciences, Denver Museum of Nature & Science, 2001 Colorado Boulevard, Denver, CO 80205 USA
- National Geographic Society, 1145 17th Street NW, Washington, DC 20036 USA
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17
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Upham NS, Esselstyn JA, Jetz W. Molecules and fossils tell distinct yet complementary stories of mammal diversification. Curr Biol 2021; 31:4195-4206.e3. [PMID: 34329589 DOI: 10.1016/j.cub.2021.07.012] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 05/05/2021] [Accepted: 07/07/2021] [Indexed: 11/25/2022]
Abstract
Reconstructing the tempo at which biodiversity arose is a fundamental goal of evolutionary biologists, yet the relative merits of evolutionary-rate estimates are debated based on whether they are derived from the fossil record or time-calibrated phylogenies (timetrees) of living species. Extinct lineages unsampled in timetrees are known to "pull" speciation rates downward, but the temporal scale at which this bias matters is unclear. To investigate this problem, we compare mammalian diversification-rate signatures in a credible set of molecular timetrees (n = 5,911 species, ∼70% from DNA) to those in fossil genus durations (n = 5,320). We use fossil extinction rates to correct or "push" the timetree-based (pulled) speciation-rate estimates, finding a surge of speciation during the Paleocene (∼66-56 million years ago, Ma) between the Cretaceous-Paleogene (K-Pg) boundary and the Paleocene-Eocene Thermal Maximum (PETM). However, about two-thirds of the K-Pg-to-PETM originating taxa did not leave modern descendants, indicating that this rate signature is likely undetectable from extant lineages alone. For groups without substantial fossil records, thankfully all is not lost. Pushed and pulled speciation rates converge starting ∼10 Ma and are equal at the present day when recent evolutionary processes can be estimated without bias using species-specific "tip" rates of speciation. Clade-wide moments of tip rates also enable enriched inference, as the skewness of tip rates is shown to approximate a clade's extent of past diversification-rate shifts. Molecular timetrees need fossil-correction to address deep-time questions, but they are sufficient for shallower time questions where extinctions are fewer.
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Affiliation(s)
- Nathan S Upham
- Department of Ecology & Evolutionary Biology, Yale University, New Haven, CT 06511, USA; Center for Biodiversity and Global Change, Yale University, New Haven, CT 06511, USA; School of Life Sciences, Arizona State University, Tempe, AZ 85287, USA.
| | - Jacob A Esselstyn
- Department of Biological Sciences and Museum of Natural Science, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Walter Jetz
- Department of Ecology & Evolutionary Biology, Yale University, New Haven, CT 06511, USA; Center for Biodiversity and Global Change, Yale University, New Haven, CT 06511, USA.
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18
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Abstract
Mammals kill both conspecific infants and adults. Whereas infanticide has been profusely studied, the killing of non-infants (adulticide) has seldom attracted the attention of researchers. Mammals kill conspecific adults by at least four, non-exclusive reasons: during intrasexual aggression for mating opportunities, to defend valuable resources, to protect their progeny and to prey upon conspecifics. In this study, we test which reason is most likely to explain male and female adulticide in mammals. For this, we recorded the presence of adulticide, the ecological and behavioural traits, and the phylogenetic relationship for more than 1000 species. Adulticide has been recorded in over 350 species from the most important Mammalian clades. Male adulticide was phylogenetically correlated with the presence of size dimorphism and intrasexually selected weapons. Female adulticide was phylogenetically associated with the occurrence of infanticide. These results indicate that the evolutionary pathways underlying the evolution of adulticide differ between sexes in mammals. Whereas males commit adulticide to increase breeding opportunities and to compete with other males for mating, females commit adulticide mainly to defend offspring from infanticidal conspecifics.
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Affiliation(s)
- José María Gómez
- Dpto de Ecología Funcional y Evolutiva, Estación Experimental de Zonas Áridas (EEZA-CSIC), Carretera de Sacramento s/n, La Cañada de San Urbano, 0-4120 Almería, Spain
| | - Miguel Verdú
- Centro de Investigaciones sobre Desertificación (CSIC-UV-GV), Ctra Moncada-Náquera km 4.5, 46113 Moncada (Valencia), Spain
| | - Adela González-Megías
- Dpto de Zoología, Facultad de Ciencias, Universidad de Granada, Avda Fuentenueva s/n, 18071 Granada, Spain
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Coatham SJ, Sellers WI, Püschel TA. Convex hull estimation of mammalian body segment parameters. R Soc Open Sci 2021; 8:210836. [PMID: 34234959 PMCID: PMC8242930 DOI: 10.1098/rsos.210836] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 06/14/2021] [Indexed: 05/12/2023]
Abstract
Obtaining accurate values for body segment parameters (BSPs) is fundamental in many biomechanical studies, particularly for gait analysis. Convex hulling, where the smallest-possible convex object that surrounds a set of points is calculated, has been suggested as an effective and time-efficient method to estimate these parameters in extinct animals, where soft tissues are rarely preserved. We investigated the effectiveness of convex hull BSP estimation in a range of extant mammals, to inform the potential future usage of this technique with extinct taxa. Computed tomography scans of both the skeleton and skin of every species investigated were virtually segmented. BSPs (the mass, position of the centre of mass and inertial tensors of each segment) were calculated from the resultant soft tissue segments, while the bone segments were used as the basis for convex hull reconstructions. We performed phylogenetic generalized least squares and ordinary least squares regressions to compare the BSPs calculated from soft tissue segments with those estimated using convex hulls, finding consistent predictive relationships for each body segment. The resultant regression equations can, therefore, be used with confidence in future volumetric reconstruction and biomechanical analyses of mammals, in both extinct and extant species where such data may not be available.
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Affiliation(s)
- Samuel J. Coatham
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK
| | - William I. Sellers
- Faculty of Life Sciences, University of Manchester, Michael Smith Building, Oxford Road, Manchester M13 9PT, UK
| | - Thomas A. Püschel
- School of Biological Sciences, University of Reading, Reading RG6 6BX, UK
- Institute of Cognitive and Evolutionary Anthropology, University of Oxford, 64 Banbury Road, Oxford OX2 6PN, UK
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20
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Lungmus JK, Angielczyk KD. Phylogeny, function and ecology in the deep evolutionary history of the mammalian forelimb. Proc Biol Sci 2021; 288:20210494. [PMID: 33878918 PMCID: PMC8059613 DOI: 10.1098/rspb.2021.0494] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Accepted: 03/29/2021] [Indexed: 11/12/2022] Open
Abstract
Mammals are the only living members of the larger clade Synapsida, which has a fossil record spanning 320 Ma. Despite the fact that much of the ecological diversity of mammals has been considered in the light of limb morphology, the ecological comparability of mammals to their fossil forerunners has not been critically assessed. Because of the wide use of limb morphology in testing ecomorphological hypothesis about extinct tetrapods, we sought: (i) to estimate when in synapsid history, modern mammals become analogues for predicting fossil ecologies; (ii) to document examples of ecomorphological convergence; and (iii) to compare the functional solutions of distinct synapsid radiations. We quantitatively compared the forelimb shapes of the multiple fossil synapsid radiations to a broad sample of extant Mammalia representing a variety of divergent locomotor ecologies. Our results indicate that each synapsid radiation explored different areas of morphospace and arrived at functional solutions that reflected their distinctive ancestral morphologies. This work counters the narrative of non-mammalian synapsid forelimb evolution as a linear progression towards more mammalian morphologies. Instead, a disparate array of early-evolving shapes subsequently contracted towards more mammal-like forms.
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Affiliation(s)
- Jacqueline K. Lungmus
- Department of Organismal Biology and Anatomy, University of Chicago, 1027 East 57th Street, Chicago, IL 60637, USA
- Negaunee Integrative Research Center, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605-2496, USA
| | - Kenneth D. Angielczyk
- Negaunee Integrative Research Center, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605-2496, USA
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21
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Bhattacharyya T, Sowdhamini R. Genome-wide survey of tyrosine phosphatases in thirty mammalian genomes. Cell Signal 2021; 84:110009. [PMID: 33848580 DOI: 10.1016/j.cellsig.2021.110009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 04/08/2021] [Accepted: 04/09/2021] [Indexed: 11/25/2022]
Abstract
The age of genomics has given us a wealth of information and the tools to study whole genomes. This, in turn, has facilitated genome-wide studies among organisms that were relatively less studied in the pre-genomic era or are non-model organisms. This paves the way to the discovery of interesting evolutionary patterns, which are brought to light by genome-wide surveys of protein superfamilies. Phosphorylation is a post-translational modification that is utilised across all clades of life, and acts as an important signalling switch, regulating several cellular processes. Tyrosine phosphatases, which are found predominantly in eukaryotes, act on phosphorylated tyrosine residues and sometimes on other substrates. Extending on our previous effort to look for tyrosine phosphatases in the human genome, we have looked for sequences of the cysteine-based tyrosine phosphatase superfamily in thirty mammalian genomes from all across Mammalia and validated the sequences with the presence of the signature catalytic motif. Domain architecture annotation, followed by in-depth analysis, revealed interesting taxon-specific patterns such as subtle differences between the protein families in marsupials and early mammals versus placental mammals. Finally, we discuss an interesting case of loss of the tyrosine phosphatase domain from a gene product in the course of eutherian evolution.
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Affiliation(s)
- Teerna Bhattacharyya
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bellary Road, Bangalore, Karnataka, 560 065, India
| | - Ramanathan Sowdhamini
- National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bellary Road, Bangalore, Karnataka, 560 065, India.
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22
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Meiri S, Murali G, Zimin A, Shak L, Itescu Y, Caetano G, Roll U. Different solutions lead to similar life history traits across the great divides of the amniote tree of life. ACTA ACUST UNITED AC 2021; 28:3. [PMID: 33557958 PMCID: PMC7869468 DOI: 10.1186/s40709-021-00134-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 01/15/2021] [Indexed: 02/07/2023]
Abstract
Amniote vertebrates share a suite of extra-embryonic membranes that distinguish them from anamniotes. Other than that, however, their reproductive characteristics could not be more different. They differ in basic ectothermic vs endothermic physiology, in that two clades evolved powered flight, and one clade evolved a protective shell. In terms of reproductive strategies, some produce eggs and others give birth to live young, at various degrees of development. Crucially, endotherms provide lengthy parental care, including thermal and food provisioning—whereas ectotherms seldom do. These differences could be expected to manifest themselves in major differences between clades in quantitative reproductive traits. We review the reproductive characteristics, and the distributions of brood sizes, breeding frequencies, offspring sizes and their derivatives (yearly fecundity and biomass production rates) of the four major amniote clades (mammals, birds, turtles and squamates), and several major subclades (birds: Palaeognathae, Galloanserae, Neoaves; mammals: Metatheria and Eutheria). While there are differences between these clades in some of these traits, they generally show similar ranges, distribution shapes and central tendencies across birds, placental mammals and squamates. Marsupials and turtles, however, differ in having smaller offspring, a strategy which subsequently influences other traits.
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Affiliation(s)
- Shai Meiri
- School of Zoology, Tel Aviv University, 6997801, Tel Aviv, Israel. .,The Steinhardt Museum of Natural History, Tel Aviv University, 6997801, Tel Aviv, Israel.
| | - Gopal Murali
- Mitrani Department of Desert Ecology, The Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Anna Zimin
- School of Zoology, Tel Aviv University, 6997801, Tel Aviv, Israel
| | - Lior Shak
- School of Zoology, Tel Aviv University, 6997801, Tel Aviv, Israel
| | - Yuval Itescu
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), 12587, Berlin, Germany.,Institute of Biology, Freie Universität Berlin, 14195, Berlin, Germany
| | - Gabriel Caetano
- Mitrani Department of Desert Ecology, The Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Midreshet Ben Gurion, Israel
| | - Uri Roll
- Mitrani Department of Desert Ecology, The Jacob Blaustein Institutes for Desert Research, Ben Gurion University of the Negev, Midreshet Ben Gurion, Israel
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23
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Ortíz-Giraldo M, Tobón-Escobar WD, Velásquez-Guarín D, Usma-Marín MF, Ossa-López PA, Ramírez-Chaves HE, Carvajal-Agudelo JD, Rivera-Páez FA. Ticks (Acari: Ixodoidea) associated with mammals in Colombia: a historical review, molecular species confirmation, and establishment of new relationships. Parasitol Res 2021; 120:383-94. [PMID: 33447885 DOI: 10.1007/s00436-020-06989-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Accepted: 11/24/2020] [Indexed: 12/19/2022]
Abstract
Ticks are considered the second most important vectors of pathogens worldwide, after mosquitoes. This study provides a systematic review of vector-host relationships between ticks and mammals (domestic and wild) and consolidates information from studies conducted in Colombia between 1911 and 2020. Using the PRISMA method, 71 scientific articles containing records for 51 tick species (Argasidae and Ixodidae) associated with mammals are reported. The existing information on tick-mammal associations in Colombia is scarce, fragmented, or very old. Moreover, 213 specimens were assessed based on morphological and molecular analyses, which allowed confirming eight tick species associated with mammals: Amblyomma calcaratum, Amblyomma dissimile, Amblyomma mixtum, Amblyomma nodosum, Amblyomma ovale, Amblyomma varium, Ixodes luciae, and Ixodes tropicalis. Several tick species are molecularly confirmed for Colombia and nine new relationships between ticks and mammals are reported. This research compiles and confirms important records of tick-mammal associations in Colombia.
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Lopatin AV, Maschenko EN, Vislobokova IA, Serdyuk NV, Dac LX. Pleistocene Mammals from the Lang Trang Cave (Vietnam): New Data. Dokl Biol Sci 2021; 496:1-4. [PMID: 33635480 DOI: 10.1134/s0012496621010099] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 08/01/2020] [Accepted: 08/03/2020] [Indexed: 11/23/2022]
Abstract
The following mammal assemblage was identified among the materials collected in 2020 from the Pleistocene of the Lang Trang cave (northern Vietnam): the primates Pongo sp., Trachypithecus sp., Macaca cf. nemestrina (Linnaeus, 1766), and Macaca sp.; the carnivorans Arctonyx collaris rostratus Matthew et Granger, 1923 and Panthera sp.; the chiropteran Ia io Thomas, 1902; the rodent Hystrix kiangsenensis Wang, 1931; the proboscidean Elephas sp.; the perissodactyls Tapirus indicus (Desmarest, 1819) and Dicerorhinus sumatrensis (Fischer, 1814); the artiodactyls Sus scrofa Linnaeus, 1758, S. barbatus Müller, 1838, Tragulus kanchil (Raffles, 1821), Hydropotes inermis Swinhoe, 1870, Muntiacus muntjak (Zimmermann, 1780), Axis porcinus (Zimmermann, 1780), Rusa unicolor (Kerr, 1792), and Capricornis sumatraensis (Bechstein, 1799). I. io, S. barbatus, T. kanchil, H. inermis, and A. porcinus were detected in the Lang Trang fauna for the first time. The mammal assemblage is dominated by inhabitants of tropical forests (from lowlands to mountains), subtropical forms are also present.
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Affiliation(s)
- A V Lopatin
- Borissiak Paleontological Institute, Russian Academy of Sciences, 117647, Moscow, Russia.
| | - E N Maschenko
- Borissiak Paleontological Institute, Russian Academy of Sciences, 117647, Moscow, Russia.,Joint Russian-Vietnamese Tropical Scientific and Technological Center, Hanoi, Vietnam
| | - I A Vislobokova
- Borissiak Paleontological Institute, Russian Academy of Sciences, 117647, Moscow, Russia
| | - N V Serdyuk
- Borissiak Paleontological Institute, Russian Academy of Sciences, 117647, Moscow, Russia.,Joint Russian-Vietnamese Tropical Scientific and Technological Center, Hanoi, Vietnam
| | - Le Xuan Dac
- Institute of Tropical Ecology, Joint Russian-Vietnamese Tropical Scientific and Technological Center, Hanoi, Vietnam
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Ocampo D, Borja-Acosta KG, Lozano-Flórez J, Cifuentes-Acevedo S, Arbeláez-Cortés E, Bayly NJ, Caguazango Á, Coral-Jaramillo B, Cueva D, Forero F, Gómez JP, Gómez C, Loaiza-Muñoz MA, Londoño GA, Losada-Prado S, Pérez-Peña S, Ramírez-Chaves HE, Rodríguez-Posada ME, Sanabria-Mejía J, Sánchez-Martínez M, Serrano-Cardozo VH, Sierra-Buitrago MS, Soto-Patiño J, Acevedo-Charry O. Body mass data set for 1,317 bird and 270 mammal species from Colombia. Ecology 2020; 102:e03273. [PMID: 33368188 DOI: 10.1002/ecy.3273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 10/05/2020] [Accepted: 10/30/2020] [Indexed: 11/09/2022]
Abstract
Body mass is one of the most important phenotypic attributes in animal ecology and life history. This trait is widely used in the fields of ecology and macroevolution, since it influences physiology, morphological functions, and a myriad of ecological and social interactions. In this data set, our aim was to gather a comprehensive bird and mammal body mass data set from northern South America. We report body mass, discriminated by sex, for 42,022 individual birds and 7,441 mammals representing 1,317 bird species (69% of Colombia's avifauna) and 270 mammal species (51% of Colombian mammals) from the Neotropics. The data were sourced from vouchers collected between 1942 and 2020 and from individuals captured and released at banding stations over the last two decades for birds (2000-2020) and the last decade for mammals (2010-2020), by 10 research groups and institutions in Colombia. This data set fills gaps identified in other similar databases, as it focuses on northern South America, a highly diverse Neotropical region often underrepresented in morphological data sets. We provide wide taxonomic coverage for studies interested in information both at regional and local scales. There are no copyright restrictions; the present data paper should be appropriately cited when data are used for publication. The authors would appreciate learning about research projects, teaching exercises, and other uses given to this data set and are open to contribute in further collaborations using these data.
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Affiliation(s)
- David Ocampo
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia
| | - Kevin G Borja-Acosta
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia
| | - Julián Lozano-Flórez
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia
| | - Sebastián Cifuentes-Acevedo
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia.,Colección de Teriológica, Universidad de Antioquia, Cl. 67 ##53-108, Medellín, Antioquia, Colombia
| | - Enrique Arbeláez-Cortés
- Colección de Ornitología, Grupo de Estudios en Biodiversidad, Escuela de Biología, Universidad Industrial de Santander, Cl. 9 #Cra 27, Bucaramanga, Santander, Colombia
| | - Nicholas J Bayly
- SELVA: Investigación para la Conservación en el Neotrópico, Dg. 42a #20 - 37, Bogotá, D.C., Colombia
| | - Ángela Caguazango
- SELVA: Investigación para la Conservación en el Neotrópico, Dg. 42a #20 - 37, Bogotá, D.C., Colombia
| | - Brayan Coral-Jaramillo
- Jardín Botánico Tabanok and Grupo de Observadores de Aves del Valle de Sibundoy, Calle 16 # 19-24, Sibundoy, Putumayo, Colombia
| | - Diego Cueva
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia
| | - Fernando Forero
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia.,Reserva Natural Los Yátaros, Gachantiva, Boyacá, Colombia
| | - Juan P Gómez
- Departamento de Química y Biología, Universidad del Norte, Km 5 Vía Puerto Colombia, Barranquilla, Atlántico, Colombia
| | - Camila Gómez
- SELVA: Investigación para la Conservación en el Neotrópico, Dg. 42a #20 - 37, Bogotá, D.C., Colombia.,Cornell Lab of Ornithology, 159 Sapsucker Woods Rd, Ithaca, New York, USA
| | - Mario A Loaiza-Muñoz
- Departamento de Ciencias Biológicas, Universidad ICESI, Cl. 18 #122-135, Cali, Valle del Cauca, Colombia
| | - Gustavo A Londoño
- Departamento de Ciencias Biológicas, Universidad ICESI, Cl. 18 #122-135, Cali, Valle del Cauca, Colombia
| | - Sergio Losada-Prado
- Grupo de Investigación en Zoología, Facultad de Ciencias, Universidad del Tolima, Cl. 42 # 1b-1, Ibagué, Tolima, Colombia
| | - Sebastián Pérez-Peña
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia
| | - Héctor E Ramírez-Chaves
- Departamento de Ciencias Biológicas and Centro de Museos, Museo de Historia Natural, Universidad de Caldas, Calle 65 # 26-10, Manizales, Caldas, Colombia
| | - Miguel E Rodríguez-Posada
- Fundación Reserva Natural La Palmita, Centro de Investigación, Grupo de investigaciones territoriales para el uso y conservación de la biodiversidad, Cra. 4 ## 58-59, Bogotá, D. C., Colombia
| | - Jeyson Sanabria-Mejía
- SELVA: Investigación para la Conservación en el Neotrópico, Dg. 42a #20 - 37, Bogotá, D.C., Colombia
| | - Manuel Sánchez-Martínez
- Departamento de Ciencias Biológicas, Universidad ICESI, Cl. 18 #122-135, Cali, Valle del Cauca, Colombia
| | - Víctor Hugo Serrano-Cardozo
- Colección de Mastozoología y Laboratorio de Ecología, Grupo de Estudios en Biodiversidad, Universidad Industrial de Santander, Bucaramanga, Santander, Colombia
| | - M Socorro Sierra-Buitrago
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia
| | - Juliana Soto-Patiño
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia
| | - Orlando Acevedo-Charry
- Colecciones Biológicas, Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Carrera 8 No. 15-08, Villa de Leyva, Boyacá, Colombia.,Asociación Colombiana de Ornitología, Bogotá, D.C., Colombia
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González-Suárez M, Gonzalez-Voyer A, von Hardenberg A, Santini L. The role of brain size on mammalian population densities. J Anim Ecol 2020; 90:653-661. [PMID: 33354764 DOI: 10.1111/1365-2656.13397] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 11/05/2020] [Indexed: 12/01/2022]
Abstract
The local abundance or population density of different organisms often varies widely. Understanding what determines this variation is an important, but not yet fully resolved question in ecology. Differences in population density are partly driven by variation in body size and diet among organisms. Here we propose that the size of an organism' brain could be an additional, overlooked, driver of mammalian population densities. We explore two possible contrasting mechanisms by which brain size, measured by its mass, could affect population density. First, because of the energetic demands of larger brains and their influence on life history, we predict mammals with larger relative brain masses would occur at lower population densities. Alternatively, larger brains are generally associated with a greater ability to exploit new resources, which would provide a competitive advantage leading to higher population densities among large-brained mammals. We tested these predictions using phylogenetic path analysis, modelling hypothesized direct and indirect relationships between diet, body mass, brain mass and population density for 656 non-volant terrestrial mammalian species. We analysed all data together and separately for marsupials and the four taxonomic orders with most species in the dataset (Carnivora, Cetartiodactyla, Primates, Rodentia). For all species combined, a single model was supported showing lower population density associated with larger brains, larger bodies and more specialized diets. The negative effect of brain mass was also supported for separate analyses in Primates and Carnivora. In other groups (Rodentia, Cetartiodactyla and marsupials) the relationship was less clear: supported models included a direct link from brain mass to population density but 95% confidence intervals of the path coefficients overlapped zero. Results support our hypothesis that brain mass can explain variation in species' average population density, with large-brained species having greater area requirements, although the relationship may vary across taxonomic groups. Future research is needed to clarify whether the role of brain mass on population density varies as a function of environmental (e.g. environmental stability) and biotic conditions (e.g. level of competition).
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Affiliation(s)
- Manuela González-Suárez
- Ecology and Evolutionary Biology, School of Biological Sciences, University of Reading, Reading, UK
| | - Alejandro Gonzalez-Voyer
- Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, México, México
| | - Achaz von Hardenberg
- Conservation Biology Research Group, Department of Biological Sciences, University of Chester, Chester, UK
| | - Luca Santini
- Department of Environmental Science, Institute for Wetland and Water Research, Faculty of Science, Radboud University, Nijmegen, The Netherlands.,National Research Council, Institute of Research on Terrestrial Ecosystems (CNR-IRET), Monterotondo (Rome), Italy
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Abstract
The diversity of mammalian coat colors, and their potential adaptive significance, have long fascinated scientists as well as the general public. The recent decades have seen substantial improvement in our understanding of their genetic bases and evolutionary relevance, revealing novel insights into the complex interplay of forces that influence these phenotypes. At the same time, many aspects remain poorly known, hampering a comprehensive understanding of these phenomena. Here we review the current state of this field and indicate topics that should be the focus of additional research. We devote particular attention to two aspects of mammalian pigmentation, melanism and pattern formation, highlighting recent advances and outstanding challenges, and proposing novel syntheses of available information. For both specific areas, and for pigmentation in general, we attempt to lay out recommendations for establishing novel model systems and integrated research programs that target the genetics and evolution of these phenotypes throughout the Mammalia.
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Affiliation(s)
- Eduardo Eizirik
- Laboratory of Genomics and Molecular Biology, School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Porto Alegre, Rio Grande do Sul 90619-900, Brazil;
| | - Fernanda J Trindade
- Laboratory of Genomics and Molecular Biology, School of Health and Life Sciences, Pontifical Catholic University of Rio Grande do Sul (PUCRS), Porto Alegre, Rio Grande do Sul 90619-900, Brazil;
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Souza RBBD, Bonfim VMG, Rios VP, Klein W. Allometric relations of respiratory variables in Amniota: Effects of phylogeny, form, and function. Comp Biochem Physiol A Mol Integr Physiol 2020; 252:110845. [PMID: 33197562 DOI: 10.1016/j.cbpa.2020.110845] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2020] [Revised: 11/06/2020] [Accepted: 11/10/2020] [Indexed: 10/23/2022]
Abstract
Biological variables are frequently described by analyzing scaling relationships of the variable against body mass (MB). Respiratory variables are no exception and allometric relations for oxygen consumption, pulmonary ventilation, tidal volume, breathing frequency, and lung volume have been described in the literature. While the allometric relations of respiratory variables given for mammals and birds are very consistent among different studies, scaling relationships for non-avian reptiles have only been scarcely described and show considerable variation between studies. Since no comprehensive study of allometric relations of respiratory variables has been carried out comparing the different groups of non-avian reptiles, we analyzed morphological and physiological variables of the respiratory system of crocodilians, chelonians, lizards, snakes, birds, and mammals, regarding the allometric relations of each variable from a phylogenetic perspective as well as related to lung morphology. Our results indicated that few respiratory variables possess significant phylogenetic signals and that tidal volume, breathing frequency (except mammals), and air convection requirement were independent of phylogeny. Contrary to the literature, lung volume of amniotes scaled isometrically to MB, with the exception of lizards (MB0.78). Air convection requirement scaled isometrically in mammals and birds, but was more variable among non-avian reptiles, from a taxonomic perspective and in regard to different lung structures. In conclusion, respiratory variables among non-avian reptiles scaled more variably than previously expected, both according to phylogeny and to lung type, warranting future studies to explore structure-function relations of the reptilian respiratory system, especially regarding snakes and crocodilians, since these groups had very few data available for analysis.
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Affiliation(s)
- Ray Brasil Bueno de Souza
- Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto 14040-901, São Paulo, Brazil
| | - Vanessa Maria Gomes Bonfim
- Programa de Pós-graduação em Biologia Comparada, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto 14040-901, São Paulo, Brazil
| | - Vitor Passos Rios
- Programa de Pós-graduação em Biologia Comparada, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto 14040-901, São Paulo, Brazil; Universidade do Estado de Minas Gerais, Passos 37900-106, Minas Gerais, Brazil
| | - Wilfried Klein
- Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto 14040-901, São Paulo, Brazil.
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29
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Abstract
Mammalian pluripotent stem cells (PSCs) have distinct molecular and biological characteristics among species, but to date we lack a comprehensive understanding of regulatory network evolution in mammals. Here, we carried out a comparative genetic analysis of 134 genes constituting the pluripotency gene regulatory network across 48 mammalian species covering all the major taxonomic groups. We report that mammalian genes in the pluripotency regulatory network show a remarkably high degree of evolutionary stasis, suggesting the conservation of fundamental biological process of mammalian PSCs across species. Nevertheless, despite the overall conservation of the regulatory network, we discovered rapid evolution of the downstream targets of the core regulatory elements and specific amino acid residues that have undergone positive selection. Our data indicate development of lineage-specific pluripotency regulating networks that may explain observed variations in some characteristics of mammalian PSCs. We further revealed that positively selected genes could be associated with species' unique adaptive characteristics that were not dedicated to regulation of PSCs. These results provide important insight into the evolution of the pluripotency gene regulatory network underlying variations in characteristics of mammalian PSCs.
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Affiliation(s)
| | - Ken-ichiro Kamei
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Japan
| | - Miho Inoue-Murayama
- Wildlife Research Center, Kyoto University, Japan
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Japan
- Wildlife Genome Collaborative Research Group, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan
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30
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Abstract
The nutrient arteries, located in the long bone diaphysis, are the major blood supply to long bones, especially during the early phases of growth and ossification. Their intersection with the central axis of the medullary area corresponds to the ossification center, and their opening on the outer bone surface to the nutrient foramen. Nutrient arteries/foramen have essentially been analyzed in humans, and only to a much lesser extent in a few mammals. Some studies have taken measurements of the nutrient foramen; others have investigated the shape and orientation of the nutrient canals, although only partially. No studies have analyzed the nutrient canal in three dimensions inside the bone and the relationships between nutrient foramen, nutrient canal, growth, and physiology require further investigation. The current study proposes to investigate in three dimensions the shape of the nutrient canal in stylopod bones of various mammals. Qualitative and quantitative parameters are defined to discuss the diversity in, for example, morphology, orientation, and diameter encountered, resorting to two different datasets to maximize differences within mammals and then analyze variation within morphologically and phylogenetically closer taxa. This study highlights a strong intraspecific variation for various parameters, with limited biological signal, but also shows trends. It notably provides evidence that canals are generally more numerous and relatively thinner in less elongated bones. Moreover, it shows that the growth center is located distally in the humerus and proximally in the femur, and that the canals are essentially oriented towards the faster growing end, so that the nutrient foramen does not indicate the location of the growth center. This result seems general in mammals but cannot be generalized outside of Mammalia. Further analyses of the features of nutrient arteries in reptiles are required to make comparisons with the trends observed in mammals.
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Affiliation(s)
- Alexandra Houssaye
- Département Adaptations du Vivant, UMR 7179 CNRS/Muséum national d'Histoire naturelle, Paris, France
| | - Jocerand Prévoteau
- Département Adaptations du Vivant, UMR 7179 CNRS/Muséum national d'Histoire naturelle, Paris, France
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31
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Luchetti A, Lomiento M, Mantovani B. Riding the Wave: The SINE-Specific V Highly-Conserved Domain Spread into Mammalian Genomes Exploiting the Replication Burst of the MER6 DNA Transposon. Int J Mol Sci 2019; 20:ijms20225607. [PMID: 31717545 PMCID: PMC6887750 DOI: 10.3390/ijms20225607] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 11/05/2019] [Accepted: 11/06/2019] [Indexed: 02/06/2023] Open
Abstract
Transposable elements are widely distributed within genomes where they may significantly impact their evolution and cell functions. Short interspersed elements (SINEs) are non-autonomous, fast-evolving elements, but some of them carry a highly conserved domain (HCD), whose sequence remained substantially unchanged throughout the metazoan evolution. SINEs carrying the HCD called V are absent in amniote genomes, but V-like sequences were found within the miniature inverted-repeat transposable element (MITE) MER6 in Homo sapiens. In the present work, the genomic distribution and evolution of MER6 are investigated, in order to reconstruct the origin of human V domain and to envisage its possible functional role. The analysis of 85 tetrapod genomes revealed that MER6 and its variant MER6A are found in primates, while only the MER6A variant was found in bats and eulipotyphlans. These MITEs appeared no longer active, in line with literature data on mammalian DNA transposons. Moreover, they appeared to have originated from a Mariner element found in turtles and from a V-SINE from bony fishes. MER6 insertions were found within genes and conserved in mRNAs: in line with previous hypothesis on functional role of HCDs, the MER6 V domain may be important for cell function also in mammals.
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Affiliation(s)
- Andrea Luchetti
- Department of Biological, Geological and Environmental Sciences, University of Bologna, 40126 Bologna, Italy;
- Correspondence: ; Tel.: +39-051-209-4165
| | - Mariana Lomiento
- Sant’Orsola Malpighi Hospital, University of Bologna, 40138 Bologna Italy;
| | - Barbara Mantovani
- Department of Biological, Geological and Environmental Sciences, University of Bologna, 40126 Bologna, Italy;
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Malungo IB, Gravett N, Bhagwandin A, Davimes JG, Manger PR. A Preliminary Description of the Sleep-Related Neural Systems in the Brain of the Blue Wildebeest, Connochaetes taurinus. Anat Rec (Hoboken) 2019; 303:1977-1997. [PMID: 31513360 DOI: 10.1002/ar.24265] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 06/12/2019] [Accepted: 07/16/2019] [Indexed: 12/18/2022]
Abstract
The current study provides a detailed qualitative description of the organization of the cholinergic, catecholaminergic, serotonergic, orexinergic, and GABAergic sleep-related systems in the brain of the blue wildebeest (Connocheates taurinus), along with a quantitative analysis of the pontine cholinergic and noradrenergic neurons, and the hypothalamic orexinergic neurons. The aim of this study was to compare the nuclear organization of these systems to other mammalian species and specifically that reported for other Cetartiodactyla. In the brain of the blue wildebeest, from the basal forebrain to the pons, the nuclear organization of the cholinergic, catecholaminergic, serotonergic, and orexinergic systems, for the most part, showed a corresponding nuclear organization to that reported in other mammals and more specifically the Cetartiodactyla. Furthermore, the description and distribution of the GABAergic system, which was examined through immunostaining for the calcium binding proteins calbindin, calretinin, and parvalbumin, was also similar to that seen in other mammals. These findings indicate that sleep in the blue wildebeest is likely to show typically mammalian features in terms of the global brain activity of the generally recognized sleep states of mammals, but Cetartiodactyl-specific features of the orexinergic system may act to lower overall daily total sleep time in relation to similar sized non-Cetartiodactyl mammals. Anat Rec, 2019. © 2019 American Association for Anatomy Anat Rec, 303:1977-1997, 2020. © 2019 American Association for Anatomy.
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Affiliation(s)
- Illke B Malungo
- School of Anatomical Sciences, Faulty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Nadine Gravett
- School of Anatomical Sciences, Faulty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Adhil Bhagwandin
- School of Anatomical Sciences, Faulty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Joshua G Davimes
- School of Anatomical Sciences, Faulty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Paul R Manger
- School of Anatomical Sciences, Faulty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
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33
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Gebert F, Njovu HK, Treydte AC, Steffan-Dewenter I, Peters MK. Primary productivity and habitat protection predict elevational species richness and community biomass of large mammals on Mt. Kilimanjaro. J Anim Ecol 2019; 88:1860-1872. [PMID: 31410849 DOI: 10.1111/1365-2656.13074] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Accepted: 06/15/2019] [Indexed: 11/27/2022]
Abstract
Despite their diversity and their large functional and cultural importance, the patterns and predictors of large mammal diversity along elevational gradients on tropical mountains remain poorly understood. Today, large mammals are threatened by human disturbances such as habitat destruction and hunting and may increasingly depend on the conservation of protected areas. Here, we use field data on the diversity of large mammals along a 3.6 km elevational gradient on Mt. Kilimanjaro to evaluate the importance of climate, net primary productivity and human impact for the distribution, species richness and community biomass of wild mammals. Mammal species richness was explored with camera traps on 66 study plots along an elevational gradient from 870 to 4,550 m a.s.l.. We applied path analysis and variance partitioning analysis to unravel the direct and indirect effects of temperature, precipitation, primary productivity, land use, land area, the protection of habitats and the occurrence of domestic mammals on the diversity of wild mammals. Both species richness and community biomass of wild mammals showed a unimodal distribution with elevation, peaking in the montane zone of Mt. Kilimanjaro. However, the peak shifted significantly to lower elevations when only protected habitats were considered. Wild mammal diversity increased with net primary productivity, protection of habitats and temperature. Our study underscores the importance of energy resources for the establishment of diversity gradients in large mammals. While temperature has been revealed as a direct predictor of diversity in most ectothermic taxa, in endothermic organisms temperature has stronger indirect effects, via a modulation of net primary productivity. Moreover, our study reveals how patterns of diversity on tropical mountains are influenced by human impact, pointing to the pivotal role of protected areas for the long-term conservation of mountain biodiversity.
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Affiliation(s)
- Friederike Gebert
- Department of Animal Ecology and Tropical Biology, Biocenter, University of Würzburg, Würzburg, Germany
| | - Henry K Njovu
- Department of Animal Ecology and Tropical Biology, Biocenter, University of Würzburg, Würzburg, Germany.,College of African Wildlife Management, Moshi, Tanzania
| | - Anna C Treydte
- Biodiversity and Ecosystem Management, Nelson-Mandela African Institution of Science and Technology, Arusha, Tanzania
| | - Ingolf Steffan-Dewenter
- Department of Animal Ecology and Tropical Biology, Biocenter, University of Würzburg, Würzburg, Germany
| | - Marcell K Peters
- Department of Animal Ecology and Tropical Biology, Biocenter, University of Würzburg, Würzburg, Germany
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Lorente M. What are the most accurate categories for mammal tarsus arrangement? A review with attention to South American Notoungulata and Litopterna. J Anat 2019; 235:1024-1035. [PMID: 31373392 DOI: 10.1111/joa.13065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/28/2019] [Indexed: 11/28/2022] Open
Abstract
The arrangement of the tarsus has been used to differentiate afrotherian and laurasiatherian ungulates for more than a century, and it is often present in morphological matrices that include appendicular features. Traditionally, it has two states: (i) an alternating tarsus, where proximal elements are interlocked with central and distal elements positioned like the bricks of a wall; and (ii) a serial tarsus, where elements are not interlocked. Over the years, these states became synonymous with the presence or absence of an astragalocuboid contact. Within the South American order Notoungulata, a third disposition was recognized: the reversed alternating tarsus, associated with a calcaneonavicular contact. This state was considered to be a synapomorphy of 'advanced' Toxodontia families (Notohippidae, Leontiniidae and Toxodontidae), but a further inspection of its distribution shows that it occurs throughout Mammalia. Additionally, it overlaps the serial tarsus condition as originally defined, and it probably has no functional or phylogenetic significance. Calcaneonavicular and astragalocuboid contacts are non-exclusive, and their presence within a species, genus or family is not constant. Serial and alternating imply movements of the articulations of the mid-tarsus in the transverse axis, while reverse alternating refers to a small calcaneonavicular contact that sometimes occurs in a serial condition or to a significant displacement of the tarsal articulations in a different (proximodistal) axis. The proximodistal arrangement of the joints could be functionally significant. Two new states are observed and defined: (i) 'flipped serial', present in Macropodidae, in which the calcaneocuboid articulation is medially displaced and significantly larger than the astragalonavicular contact, but the relationships between proximal and central elements are one to one; and (ii) 'distal cuboid', an extreme proximodistal displacement of the astragalonavicular joint. Serial and alternating, as originally defined (i.e. without any reference to which bone contacts which), seem to be the best states for classifying tarsal arrangement though as the disposition of distal or central bones in relationship to proximal bones.
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Affiliation(s)
- Malena Lorente
- Consejo Nacional de Investigaciones Científicas y Técnicas, División Paleontología Vertebrados, Museo de La Plata, La Plata, Buenos Aires, Argentina
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Asher RJ, Smith MR, Rankin A, Emry RJ. Congruence, fossils and the evolutionary tree of rodents and lagomorphs. R Soc Open Sci 2019; 6:190387. [PMID: 31417738 PMCID: PMC6689570 DOI: 10.1098/rsos.190387] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Accepted: 06/19/2019] [Indexed: 05/10/2023]
Abstract
Given an evolutionary process, we expect distinct categories of heritable data, sampled in ever larger amounts, to converge on a single tree of historical relationships. We tested this assertion by undertaking phylogenetic analyses of a new morphology-DNA dataset for mammals, focusing on Glires and including the oldest known skeletons of geomyoid and Ischyromys rodents. Our results support geomyoids in the mouse-related clade (Myomorpha) and a ricochetal locomotor pattern for the common ancestor of geomyoid rodents. They also support Ischyromys in the squirrel-related clade (Sciuromorpha) and the evolution of sciurids and Aplodontia from extinct, 'protrogomorph'-grade rodents. Moreover, ever larger samples of characters from our dataset increased congruence with an independent, well-corroborated tree. Addition of morphology from fossils increased congruence to a greater extent than addition of morphology from extant taxa, consistent with fossils' temporal proximity to the common ancestors of living species, reflecting the historical, phylogenetic signal present in our data, particularly in morphological characters from fossils. Our results support the widely held but poorly tested intuition that fossils resemble the common ancestors shared by living species, and that fossilizable hard tissues (i.e. bones and teeth) help to reconstruct the evolutionary tree of life.
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Affiliation(s)
- Robert J. Asher
- Department of Zoology, University of Cambridge, Cambridge, UK
| | - Martin R. Smith
- Department of Earth Sciences, University of Durham, Durham, UK
| | - Aime Rankin
- Department of Zoology, University of Cambridge, Cambridge, UK
| | - Robert J. Emry
- Department of Paleobiology, Smithsonian Institution, Washington, DC, USA
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Grattarola F, Botto G, da Rosa I, Gobel N, González EM, González J, Hernández D, Laufer G, Maneyro R, Martínez-Lanfranco JA, Naya DE, Rodales AL, Ziegler L, Pincheira-Donoso D. Biodiversidata: An Open-Access Biodiversity Database for Uruguay. Biodivers Data J 2019; 7:e36226. [PMID: 31274982 PMCID: PMC6597616 DOI: 10.3897/bdj.7.e36226] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 06/14/2019] [Indexed: 11/12/2022] Open
Abstract
Background The continental and marine territories of Uruguay are characterised by a rich convergence of multiple biogeographic ecoregions of the Neotropics, making this country a peculiar biodiversity spot. However, despite the biological significance of Uruguay for the South American subcontinent, the distribution of biodiversity patterns in this country remain poorly understood, given the severe gaps in available records of geographic species distributions. Currently, national biodiversity datasets are not openly available and, thus, a dominant proportion of the primary biodiversity data produced by researchers and institutions across Uruguay remains highly dispersed and difficult to access for the wider scientific and environmental community. In this paper, we aim to fill this gap by developing the first comprehensive, open-access database of biodiversity records for Uruguay (Biodiversidata), which is the result of a large-scale collaboration involving experts working across the entire range of taxonomic diversity found in the country. New information As part of the first phase of Biodiversidata, we here present a comprehensive database of tetrapod occurrence records native from Uruguay, with the latest taxonomic updates. The database provides primary biodiversity data on extant Amphibia, Reptilia, Aves and Mammalia species recorded within the country. The total number of records collated is 69,380, spanning 673 species and it is available at the Zenodo repository: https://doi.org/10.5281/zenodo.2650169. This is the largest and most geographically and taxonomically comprehensive database of Uruguayan tetrapod species available to date and it represents the first open repository for the country.
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Affiliation(s)
- Florencia Grattarola
- School of Life Sciences, University of Lincoln, Brayford Campus, Lincoln, United Kingdom School of Life Sciences, University of Lincoln, Brayford Campus Lincoln United Kingdom
| | - Germán Botto
- Department of Micriobiology and Immunology, Montana State Universitiy, Bozeman, United States of America Department of Micriobiology and Immunology, Montana State Universitiy Bozeman United States of America.,Departamento de Métodos Cuantitativos, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay Departamento de Métodos Cuantitativos, Facultad de Medicina, Universidad de la República Montevideo Uruguay.,Programa para la Conservación de los Murciélagos de Uruguay, Museo Nacional de Historia Natural, Montevideo, Uruguay Programa para la Conservación de los Murciélagos de Uruguay, Museo Nacional de Historia Natural Montevideo Uruguay
| | - Inés da Rosa
- Laboratorio de Sistemática e Historia Natural de Vertebrados, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay Laboratorio de Sistemática e Historia Natural de Vertebrados, Facultad de Ciencias, Universidad de la República Montevideo Uruguay
| | - Noelia Gobel
- Área Biodiversidad y Conservación, Museo Nacional de Historia Natural, Montevideo, Uruguay Área Biodiversidad y Conservación, Museo Nacional de Historia Natural Montevideo Uruguay
| | - Enrique M González
- Museo Nacional de Historia Natural, Montevideo, Uruguay Museo Nacional de Historia Natural Montevideo Uruguay
| | - Javier González
- Museo Nacional de Historia Natural, Montevideo, Uruguay Museo Nacional de Historia Natural Montevideo Uruguay
| | - Daniel Hernández
- NGO JULANA (Jugando en la Naturaleza), Montevideo, Uruguay NGO JULANA (Jugando en la Naturaleza) Montevideo Uruguay
| | - Gabriel Laufer
- Área Biodiversidad y Conservación, Museo Nacional de Historia Natural, Montevideo, Uruguay Área Biodiversidad y Conservación, Museo Nacional de Historia Natural Montevideo Uruguay
| | - Raúl Maneyro
- Laboratorio de Sistemática e Historia Natural de Vertebrados, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay Laboratorio de Sistemática e Historia Natural de Vertebrados, Facultad de Ciencias, Universidad de la República Montevideo Uruguay
| | - Juan A Martínez-Lanfranco
- Museo Nacional de Historia Natural, Montevideo, Uruguay Museo Nacional de Historia Natural Montevideo Uruguay.,Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, Mississippi, United States of America Department of Wildlife, Fisheries and Aquaculture, Mississippi State University Mississippi United States of America
| | - Daniel E Naya
- Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República Montevideo Uruguay
| | - Ana L Rodales
- Programa para la Conservación de los Murciélagos de Uruguay, Museo Nacional de Historia Natural, Montevideo, Uruguay Programa para la Conservación de los Murciélagos de Uruguay, Museo Nacional de Historia Natural Montevideo Uruguay
| | - Lucía Ziegler
- Centro Universitario Regional del Este (CURE), Universidad de la República, Maldonado, Uruguay Centro Universitario Regional del Este (CURE), Universidad de la República Maldonado Uruguay
| | - Daniel Pincheira-Donoso
- MacroBiodiversity Lab, School of Science and Technology, Department of Biosciences, Trent University, Nottingham, United Kingdom MacroBiodiversity Lab, School of Science and Technology, Department of Biosciences, Trent University Nottingham United Kingdom
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Abstract
Mammals and their closest fossil relatives use their shoulders and forelimbs for many functions, which is reflected by the great range of mammalian forelimb shapes. We found that forelimb shape diversity in the early mammalian lineage (Synapsida) began to increase about 270 million years ago, with the emergence of a group called Therapsida, and is accompanied by new forelimb functions. The functional diversification of therapsid forelimbs was curtailed by the Permo-Triassic mass extinction, but eventually continued as more mammal-like therapsids evolved new ecologies. Our analyses characterize the deep time origin of a quintessential part of the mammalian body plan: evolutionarily labile forelimbs that can be deployed in a wide range of functional and ecological roles. Mammals and their closest fossil relatives are unique among tetrapods in expressing a high degree of pectoral girdle and forelimb functional diversity associated with fully pelagic, cursorial, subterranean, volant, and other lifestyles. However, the earliest members of the mammalian stem lineage, the “pelycosaur”-grade synapsids, present a far more limited range of morphologies and inferred functions. The more crownward nonmammaliaform therapsids display novel forelimb morphologies that have been linked to expanded functional diversity, suggesting that the roots of this quintessentially mammalian phenotype can be traced to the pelycosaur–therapsid transition in the Permian period. We quantified morphological disparity of the humerus in pelycosaur-grade synapsids and therapsids using geometric morphometrics. We found that disparity begins to increase concurrently with the emergence of Therapsida, and that it continues to rise until the Permo-Triassic mass extinction. Further, therapsid exploration of new regions of morphospace is correlated with the evolution of novel ecomorphologies, some of which are characterized by changes to overall limb morphology. This evolutionary pattern confirms that nonmammaliaform therapsid forelimbs underwent ecomorphological diversification throughout the Permian, with functional elaboration initially being more strongly expressed in the proximal end of the humerus than the distal end. The role of the forelimbs in the functional diversification of therapsids foreshadows the deployment of forelimb morphofunctional diversity in the evolutionary radiation of mammals.
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Arbour VM, Zanno LE. Tail Weaponry in Ankylosaurs and Glyptodonts: An Example of a Rare but Strongly Convergent Phenotype. Anat Rec (Hoboken) 2019; 303:988-998. [PMID: 30835954 DOI: 10.1002/ar.24093] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 10/24/2018] [Accepted: 11/05/2018] [Indexed: 01/08/2023]
Abstract
The unusual clubbed tails of glyptodonts among mammals and ankylosaurines among dinosaurs most likely functioned as weapons of intraspecific combat or interspecific defense and are characterized by stiffening of the distal tail and, in some taxa, expansion of the distal tail tip. Although similarities in tail weaponry have been noted as a potential example of convergent evolution, this hypothesis has not been tested quantitatively, particularly with metrics that can distinguish convergence from long-term stasis, assess the relative strength of convergence, and identify potential constraints in the appearance of traits during the stepwise, independent evolution of these structures. Using recently developed metrics of convergence within a phylomorphospace framework, we document that convergence accounts for over 80% of the morphological evolution in traits associated with tail weaponry in ankylosaurs and glyptodonts. In addition, we find that ankylosaurs and glyptodonts shared an independently derived, yet constrained progression of traits correlated with the presence of a tail club, including stiffening of the distal tail as a precedent to expansion of the tail tip in both clades. Despite differences in the anatomical construction of the tail club linked to lineage-specific historical contingency, these lineages experienced pronounced, quantifiable convergent evolution, supporting hypotheses of functional constraints and shared selective pressures on the evolution of these distinctive weapons. Anat Rec, 303:988-998, 2020. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Victoria M Arbour
- Department of Knowledge, Royal BC Museum, Victoria, British Columbia, Canada
| | - Lindsay E Zanno
- Department of Paleontology, North Carolina Museum of Natural Sciences, Raleigh, North Carolina.,Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina
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van den Hurk P, Kerkkamp HMI. Phylogenetic origins for severe acetaminophen toxicity in snake species compared to other vertebrate taxa. Comp Biochem Physiol C Toxicol Pharmacol 2019; 215:18-24. [PMID: 30268769 DOI: 10.1016/j.cbpc.2018.09.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Accepted: 09/06/2018] [Indexed: 11/24/2022]
Abstract
While it has been known for a while that some snake species are extremely sensitive to acetaminophen, the underlying mechanism for this toxicity has not been reported. To investigate if essential detoxification enzymes are missing in snake species that are responsible for biotransformation of acetaminophen in other vertebrate species, livers were collected from a variety of snake species, together with samples from alligator, snapping turtle, cat, rat, and cattle. Subcellular fractions were analyzed for enzymatic activities of phenol-type sulfotransferase and UDP‑glucuronosyltransferase, total glutathione S‑transferase, and N‑acetyltransferase. The results showed that none of the snake species, together with the cat samples, had any phenol-type glucuronidation activity, and that this activity was much lower in alligator and turtle samples than in the mammalian species. Combined with the lack of N‑acetyltransferase activity in snakes and cats, this would explain the accumulation of the aminophenol metabolite, which induces methemoglobinemia and subsequent suffocation of snakes and cats after acetaminophen exposure. While previous investigations have concluded that in cats the gene for the phenol-type glucuronosyltransferase isoform has turned into a pseudogene because of several point mutations, evaluation of genomic information for snake species revealed that they have only 2 genes that may code for glucuronosyltransferase isoforms. Similarity of these genes with mammalian genes is <50%, and suggests that the expressed enzymes may act on other types of substrates than aromatic amines. This indicates that the extreme sensitivity for acetaminophen in snakes is based on a different phylogenetic origin than the sensitivity observed in cats.
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Affiliation(s)
- Peter van den Hurk
- Department of Biological Sciences, Clemson University, Clemson, SC 20624, USA.
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Hüppi E, Sánchez-Villagra MR, Tzika AC, Werneburg I. Ontogeny and phylogeny of the mammalian chondrocranium: the cupula nasi anterior and associated structures of the anterior head region. Zoological Lett 2018; 4:29. [PMID: 30505462 PMCID: PMC6260904 DOI: 10.1186/s40851-018-0112-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Accepted: 10/26/2018] [Indexed: 05/28/2023]
Abstract
BACKGROUND The study of chondrocrania has a long tradition with a focus on single specimens and stages. It revealed great interspecific diversity and a notion of intraspecific variation. As an embryonic structure, the chondrocranium is subject to major changes in ontogeny with resorption and ossification of different cartilaginous structures. The cupula nasi anterior is the anteriormost portion of the cartilaginous nasal capsule and is expected to mirror much of the animal's life history and lifestyle. Its diversity in mammals is reflected in the external nasal anatomy of newborns. Marsupials and placentals show marked differences, likely related to breathing and suckling behavior. RESULTS We examined histological sections of five marsupial and three placentals species and traced the development of the cupula nasi anterior and the anterior nasal capsule. We found ontogenetic variation for nearly 50% of the 43 characters defined herein. By comparing to the literature and considering ontogenetic variation, we performed an analysis of character evolution in 70 mammalian species and reconstructed the nasal anatomy of the therian ancestor. CONCLUSIONS At birth, marsupials have a complete but simple cupula nasi anterior, whereas placentals display a more diverse morphology due to reductions and variations of chondrocranial elements. The more compact nasal capsule in marsupials is related to a long and strong fixation to the mother's teat after birth. Within marsupials and placentals, several derived characters distinguish major taxa, probably related to developmental and functional constraints. The reconstructed ancestral anatomy of the cupula nasi anterior supports the hypothesis that the therian ancestor was placental-like and that the marsupial lifestyle is more derived.
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Affiliation(s)
- Evelyn Hüppi
- Paläontologisches Institut und Museum der Universität Zürich, Karl-Schmid-Strasse 4, 8006 Zürich, Switzerland
| | - Marcelo R. Sánchez-Villagra
- Paläontologisches Institut und Museum der Universität Zürich, Karl-Schmid-Strasse 4, 8006 Zürich, Switzerland
| | - Athanasia C. Tzika
- Laboratory of Artificial & Natural Evolution (LANE), Department of Genetics & Evolution, University of Geneva, Quai E. Ansermet 30, 1205 Genève, Switzerland
| | - Ingmar Werneburg
- Senckenberg Center for Human Evolution and Palaeoenvironment (HEP) at Eberhard Karls Universität, Sigwartstraße 10, 72076 Tübingen, Germany
- Fachbereich Geowissenschaften der Eberhard-Karls-Universität Tübingen, Hölderlinstraße 12, 72074 Tübingen, Germany
- Museum für Naturkunde, Leibniz-Institut für Evolutions- & Biodiversitätsforschung an der Humboldt-Universität zu Berlin, Invalidenstraße 43, 10115 Berlin, Germany
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Dewaele L, Lambert O, Louwye S. A late surviving Pliocene seal from high latitudes of the North Atlantic realm: the latest monachine seal on the southern margin of the North Sea. PeerJ 2018; 6:e5734. [PMID: 30324020 PMCID: PMC6183512 DOI: 10.7717/peerj.5734] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Accepted: 09/05/2018] [Indexed: 11/30/2022] Open
Abstract
Background The family of true seals, the Phocidae, is subdivided into two subfamilies: the southern Monachinae, and the northern Phocinae, following the subfamilies’ current distribution: extant Monachinae are largely restricted to the (sub-)Antarctic and the eastern Pacific, with historical distributions of the monk seals of the genus Monachus in the Caribbean, the Mediterranean and around Hawaii; and Phocinae to the northern temperate and Arctic zones. However, the fossil record shows that Monachinae were common in the North Atlantic realm during the late Miocene and early Pliocene. Until now, only one late Pliocene record is known from the Mediterranean, Pliophoca etrusca from Tuscany, Italy, but none from farther north in the North Atlantic. Methods We present the description of one partial phocid humerus collected in the early 20th century from the Antwerp area (Belgium), with an assessment of its stratigraphic origin using data from the literature. Results The studied humerus was recovered during construction works at the former Lefèvre dock in the Antwerp harbour (currently part of the America dock). Combining the information associated to the specimen with data from the literature and from local boreholes, the upper Pliocene Lillo Formation is ascertained as the lithological unit from which the specimen originates. Morphologically, among other features the shape of the deltopectoral crest and the poor development of the supinator crest indicates a monachine attribution for this specimen. The development of the deltopectoral crest is closer to the condition in extant Monachinae than in extinct Monachinae. Discussion The presented specimen most likely represents a monachine seal and a literature study clearly shows that it came from the latest early to late Pliocene Lillo Formation. This would be the first known monachine specimen from the latest early to late Pliocene of the North Sea, and more broadly from the northern part of the North Atlantic realm. This humerus differs from the humerus of P. etrusca and suggests a higher diversity of Monachinae in the latest early to late Pliocene than previously assumed.
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Affiliation(s)
- Leonard Dewaele
- Earth and History of Life, Royal Belgian Institute of Natural Sciences, Brussels, Belgium.,Department of Geology, Ghent University, Ghent, Belgium
| | - Olivier Lambert
- Earth and History of Life, Royal Belgian Institute of Natural Sciences, Brussels, Belgium
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Casanovas-Vilar I, Garcia-Porta J, Fortuny J, Sanisidro Ó, Prieto J, Querejeta M, Llácer S, Robles JM, Bernardini F, Alba DM. Oldest skeleton of a fossil flying squirrel casts new light on the phylogeny of the group. eLife 2018; 7:39270. [PMID: 30296996 PMCID: PMC6177260 DOI: 10.7554/elife.39270] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Accepted: 09/10/2018] [Indexed: 11/29/2022] Open
Abstract
Flying squirrels are the only group of gliding mammals with a remarkable diversity and wide geographical range. However, their evolutionary story is not well known. Thus far, identification of extinct flying squirrels has been exclusively based on dental features, which, contrary to certain postcranial characters, are not unique to them. Therefore, fossils attributed to this clade may indeed belong to other squirrel groups. Here we report the oldest fossil skeleton of a flying squirrel (11.6 Ma) that displays the gliding-related diagnostic features shared by extant forms and allows for a recalibration of the divergence time between tree and flying squirrels. Our phylogenetic analyses combining morphological and molecular data generally support older dates than previous molecular estimates (~23 Ma), being congruent with the inclusion of some of the earliest fossils (~36 Ma) into this clade. They also show that flying squirrels experienced little morphological change for almost 12 million years. Mammals can walk, hop, swim and fly; a few, like marsupial sugar gliders or colugos, can even glide. With 52 species scattered across the Northern hemisphere, flying squirrels are by far the most successful group that adopted this way of going airborne. To drift from tree to tree, these small animals pack their own ‘parachute’: a membrane draping between their lower limbs and the long cartilage rods that extend from their wrists. Tiny specialized wrist bones, which are unique to flying squirrels, help to support the cartilaginous extensions. The origin of flying squirrels is a point of contention: while most genetic studies point towards the group splitting from tree squirrels about 23 million years ago, the oldest remains – mostly cheek teeth – suggest the animals were already soaring through forests 36 million years ago. However, recent studies show that the dental features used to distinguish between gliding and non-gliding squirrels may actually be shared by the two groups. In 2002, the digging of a dump site in Barcelona unearthed a peculiar skeleton: first a tail and two thigh bones, big enough that the researchers thought it could be the fossil of a small primate. In fact, and much to the disappointment of paleoprimatologists, further excavating revealed that it was a rodent. As the specimen – nearly an entire skeleton – was being prepared, paleontologists insisted that all the ‘dirt’ attached to the bones had to be carefully screen-washed. From the mud emerged the minuscule specialized wrist bones: the primate-turned-rodent was in fact Miopetaurista neogrivensis, an extinct flying squirrel. Here, Casanovas-Vilar et al. describe the 11.6 million years old fossil, the oldest ever found. The wrist bones reveal that the animal belongs to the group of flying squirrels that have large sizes. Evolutionary analyses that combined molecular and paleontological data demonstrated that flying squirrels evolved from tree squirrels as far back as 31 to 25 million years ago, and possibly even earlier. In addition, the results show that Miopetaurista is closely related to Petaurista, a modern group of giant flying squirrels. In fact, their skeletons are so similar that the large species that currently inhabit the tropical and subtropical forests of Asia could be considered living fossils. Molecular and paleontological data are often at odds, but this fossil shows that they can be reconciled and combined to retrace history. Discovering older fossils, or even transitional forms, could help to retrace how flying squirrels took a leap from the rest of their evolutionary tree.
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Affiliation(s)
- Isaac Casanovas-Vilar
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Joan Garcia-Porta
- Centre de Recerca Ecològica i Aplicacions Forestals, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Josep Fortuny
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain.,Centre de Recherches sur les Paléoenvironnements et la Paléobiodiversité, Muséum national d'Histoire naturelle, Paris, France
| | - Óscar Sanisidro
- Biodiversity Institute, University of Kansas, Lawrence, United States
| | - Jérôme Prieto
- Department für Geo- und Umweltwissenschaften, Paläontologie, Ludwig-Maximilians-Universität München, Munich, Germany.,Bayerische Staatssammlung für Paläontologie und Geologie, Munich, Germany
| | | | - Sergio Llácer
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Josep M Robles
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain
| | - Federico Bernardini
- Centro Fermi, Museo Storico della Fisica e Centro Studi e Ricerche Enrico Fermi, Roma, Italy.,Multidisciplinary Laboratory, The 'Abdus Salam' International Centre for Theoretical Physics, Trieste, Italy
| | - David M Alba
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Barcelona, Spain
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Pires MM, Rankin BD, Silvestro D, Quental TB. Diversification dynamics of mammalian clades during the K-Pg mass extinction. Biol Lett 2018; 14:rsbl.2018.0458. [PMID: 30258031 DOI: 10.1098/rsbl.2018.0458] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2018] [Accepted: 09/05/2018] [Indexed: 11/12/2022] Open
Abstract
The Cretaceous/Palaeogene (K-Pg) episode is an iconic mass extinction, in which the diversity of numerous clades abruptly declined. However, the responses of individual clades to mass extinctions may be more idiosyncratic than previously understood. Here, we examine the diversification dynamics of the three major mammalian clades in North America across the K-Pg. Our results show that these clades responded in dramatically contrasting ways to the K-Pg event. Metatherians underwent a sudden rise in extinction rates shortly after the K-Pg, whereas declining origination rates first halted diversification and later drove the loss of diversity in multituberculates. Eutherians experienced high taxonomic turnover near the boundary, with peaks in both origination and extinction rates. These findings indicate that the effects of geological episodes on diversity are context dependent and that mass extinctions can affect the diversification of clades by independently altering the extinction regime, the origination regime or both.
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Affiliation(s)
- Mathias M Pires
- Departamento de Biologia Animal, Universidade Estadual de Campinas, Campinas 13083-862, Brazil .,Departamento de Ecologia, Universidade de São Paulo, São Paulo 05508-900, Brazil
| | - Brian D Rankin
- University of California Museum of Paleontology (UCMP), University of California, Berkeley, CA, USA
| | - Daniele Silvestro
- Department of Biological and Environmental Sciences, University of Gothenburg and Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
| | - Tiago B Quental
- Departamento de Ecologia, Universidade de São Paulo, São Paulo 05508-900, Brazil
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Csiki-Sava Z, Vremir M, Meng J, Brusatte SL, Norell MA. Dome-headed, small-brained island mammal from the Late Cretaceous of Romania. Proc Natl Acad Sci U S A 2018; 115:4857-62. [PMID: 29686084 DOI: 10.1073/pnas.1801143115] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The island effect is a well-known evolutionary phenomenon, in which island-dwelling species isolated in a resource-limited environment often modify their size, anatomy, and behaviors compared with mainland relatives. This has been well documented in modern and Cenozoic mammals, but it remains unclear whether older, more primitive Mesozoic mammals responded in similar ways to island habitats. We describe a reasonably complete and well-preserved skeleton of a kogaionid, an enigmatic radiation of Cretaceous island-dwelling multituberculate mammals previously represented by fragmentary fossils. This skeleton, from the latest Cretaceous of Romania, belongs to a previously unreported genus and species that possesses several aberrant features, including an autapomorphically domed skull and one of the smallest brains relative to body size of any advanced mammaliaform, which nonetheless retains enlarged olfactory bulbs and paraflocculi for sensory processing. Drawing on parallels with more recent island mammals, we interpret these unusual neurosensory features as related to the island effect. This indicates that the ability to adapt to insular environments developed early in mammalian history, before the advent of therian mammals, and mammals with insular-related modifications were key components of well-known dwarfed dinosaur faunas. Furthermore, the specimen suggests that brain size reduction, in association with heightened sensory acuity but without marked body size change, is a novel expression of the island effect in mammals.
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Guevara L, Gerstner BE, Kass JM, Anderson RP. Toward ecologically realistic predictions of species distributions: A cross-time example from tropical montane cloud forests. Glob Chang Biol 2018; 24:1511-1522. [PMID: 29156083 DOI: 10.1111/gcb.13992] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2017] [Accepted: 10/06/2017] [Indexed: 05/25/2023]
Abstract
There is an urgent need for more ecologically realistic models for better predicting the effects of climate change on species' potential geographic distributions. Here we build ecological niche models using MAXENT and test whether selecting predictor variables based on biological knowledge and selecting ecologically realistic response curves can improve cross-time distributional predictions. We also evaluate how the method chosen for extrapolation into nonanalog conditions affects the prediction. We do so by estimating the potential distribution of a montane shrew (Mammalia, Soricidae, Cryptotis mexicanus) at present and the Last Glacial Maximum (LGM). Because it is tightly associated with cloud forests (with climatically determined upper and lower limits) whose distributional shifts are well characterized, this species provides clear expectations of plausible vs. implausible results. Response curves for the MAXENT model made using variables selected via biological justification were ecologically more realistic compared with those of the model made using many potential predictors. This strategy also led to much more plausible geographic predictions for upper and lower elevational limits of the species both for the present and during the LGM. By inspecting the modeled response curves, we also determined the most appropriate way to extrapolate into nonanalog environments, a previously overlooked factor in studies involving model transfer. This study provides intuitive context for recommendations that should promote more realistic ecological niche models for transfer across space and time.
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Affiliation(s)
- Lázaro Guevara
- Department of Biology, City College of New York, City University of New York, New York, NY, USA
- Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México, Mexico City, Mexico
| | - Beth E Gerstner
- Department of Biology, City College of New York, City University of New York, New York, NY, USA
- Department of Fisheries & Wildlife, Michigan State University, East Lansing, MI, USA
| | - Jamie M Kass
- Department of Biology, City College of New York, City University of New York, New York, NY, USA
- Program in Biology, Graduate Center, City University of New York, New York, NY, USA
| | - Robert P Anderson
- Department of Biology, City College of New York, City University of New York, New York, NY, USA
- Program in Biology, Graduate Center, City University of New York, New York, NY, USA
- Division of Vertebrate Zoology (Mammalogy), American Museum of Natural History, New York, NY, USA
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Peredo CM, Pyenson ND. Salishicetus meadi, a new aetiocetid from the late Oligocene of Washington State and implications for feeding transitions in early mysticete evolution. R Soc Open Sci 2018; 5:172336. [PMID: 29765681 PMCID: PMC5936946 DOI: 10.1098/rsos.172336] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 03/14/2018] [Indexed: 06/08/2023]
Abstract
Living baleen whales, or Mysticeti, lack teeth and instead feed using keratinous baleen plates to sieve prey-laden water. This feeding strategy is profoundly different from that of their toothed ancestors, which processed prey using the differentiated dentition characteristic of mammals. The fossil record of mysticetes reveals stem members that include extinct taxa with dentition, illuminating the morphological states that preceded the loss of teeth and the subsequent origin of baleen. The relationships among stem mysticetes, including putative clades such as Mammalodontidae and Aetiocetidae, remain debatable. Aetiocetids are among the more species-rich clade of stem mysticetes, and known only from fossil localities along the North Pacific coastline. Here, we report a new aetiocetid, Salishicetus meadi gen. et sp. nov, from the late Oligocene of Washington State, USA. Salishicetus preserves a near-complete lower dentition with extensive occlusal wear, indicating that it processed prey using shearing cheek teeth in the same way as its stem cetacean ancestors. Using a matrix with all known species of aetiocetids, we recover a monophyletic Aetiocetidae, crownward of a basal clade of Mammalodontidae. The description of Salishicetus resolves phylogenetic relationships among aetiocetids, which provides a basis for reconstructing ancestral feeding morphology along the stem leading to crown Mysticeti.
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Affiliation(s)
- Carlos Mauricio Peredo
- Department of Environmental Science and Policy, George Mason University, Fairfax VA, USA
- Department of Paleobiology, National Museum of Natural History, Washington DC, USA
| | - Nicholas D. Pyenson
- Department of Paleobiology, National Museum of Natural History, Washington DC, USA
- Departments of Mammalogy and Paleontology, Burke Museum of Natural History and Culture, Seattle WA, USA
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Abstract
Four extant lineages of mammals have invaded and diversified in the water: Sirenia, Cetacea, Pinnipedia, and Lutrinae. Most of these aquatic clades are larger bodied, on average, than their closest land-dwelling relatives, but the extent to which potential ecological, biomechanical, and physiological controls contributed to this pattern remains untested quantitatively. Here, we use previously published data on the body masses of 3,859 living and 2,999 fossil mammal species to examine the evolutionary trajectories of body size in aquatic mammals through both comparative phylogenetic analysis and examination of the fossil record. Both methods indicate that the evolution of an aquatic lifestyle is driving three of the four extant aquatic mammal clades toward a size attractor at ∼500 kg. The existence of this body size attractor and the relatively rapid selection toward, and limited deviation from, this attractor rule out most hypothesized drivers of size increase. These three independent body size increases and a shared aquatic optimum size are consistent with control by differences in the scaling of energetic intake and cost functions with body size between the terrestrial and aquatic realms. Under this energetic model, thermoregulatory costs constrain minimum size, whereas limitations on feeding efficiency constrain maximum size. The optimum size occurs at an intermediate value where thermoregulatory costs are low but feeding efficiency remains high. Rather than being released from size pressures, water-dwelling mammals are driven and confined to larger body sizes by the strict energetic demands of the aquatic medium.
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Percequillo AR, Dalapicolla J, Abreu-Júnior EF, Roth PRO, Ferraz KM, Chiquito EA. How many species of mammals are there in Brazil? New records of rare rodents (Rodentia: Cricetidae: Sigmodontinae) from Amazonia raise the current known diversity. PeerJ 2017; 5:e4071. [PMID: 29259840 PMCID: PMC5733914 DOI: 10.7717/peerj.4071] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Accepted: 10/30/2017] [Indexed: 11/20/2022] Open
Abstract
BACKGROUND Since 1996, when Vivo questioned how many species of mammals occur in Brazil, there has been a huge effort to assess this biodiversity. In this contribution, we present new records for rare species of the sigmodontine rodent genera Rhagomys and Neusticomys previously unknown to Brazilian Amazon. We provided detailed information on the morphologic variation to allow the proper identification of these species. We also furnished updated information on their collection, aiming to establish hypothesis of their geographic distribution, based on SDM's, aiming to hypothesize potential occurrence areas for these species. METHODS Rodent specimens were sampled in separate inventories in two sites of Rondônia State (Hydroelectric Dam Jirau and Parque Nacional de Pacaás Novos) and one site in Pará State (Pacajá), Brazil, and were compared to specimens from museum collections to apply appropriate names. The SDM were conducted using two algorithms for rare species, MaxEnt and randomForest (RF), and were based on seven localities for Rhagomys, and 10 for Neusticomys. RESULTS All specimens were collected with pitfall traps. One specimen of genus Rhagomys was trapped in the Hydroelectric Dam Jirau. We identified this specimen as R. longilingua, and the SDM species indicates suitable areas for its occurrence at high elevations near on the Andes and lowlands of Amazon Basin to the South of the Rio Amazonas. Two specimens of Neusticomys were recorded, and we identified the specimen from Pacaás Novos as N. peruviensis, with SDM suggesting main areas of occurrence on Western Amazon. We applied the name N. ferreirai to the specimen from Pacajá, with SDM recovering suitable areas in Eastern Amazon. DISCUSSION We reinforced the importance of pitfall traps on the study of Neotropical rodents. We described morphologic variation within and among all species that do not invalidate their specific status, but in the near future a re-evaluation will be mandatory. The new records extended the species distribution considerably. SDM was successful to predict their distributions, as the two algorithms presented important differences in range size recovered by the models that can be explained by differences in the thresholds used for the construction of the models. Most suitable areas coincide with the areas facing most of the deforestation in Amazon. We added two rare species of sigmodontine rodents to the list of Brazilian Mammals, which now comprises 722 species (or 775 valid nominal taxa). Although more information is available than in 1996, it is essential that mammal experts maintain inventory and revisionary programs to update and revise this information. This is even more important, as changes in Brazilian environmental legislation are being discussed, suggesting reduced need for environmental impact reports prior to beginning commercial enterprises, resulting in the loss of information about native biodiversity in the affected areas.
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Affiliation(s)
- Alexandre R. Percequillo
- Departamento de Ciências Biológicas, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
- Department of Life Sciences, The Natural History Museum, London, United Kingdon
| | - Jeronymo Dalapicolla
- Departamento de Ciências Biológicas, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
- Department of Ecology and Evolutionary Biology, Museum of Zoology, University of Michigan, Ann Arbor, MI, United States of America
| | - Edson F. Abreu-Júnior
- Departamento de Ciências Biológicas, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
| | - Paulo Ricardo O. Roth
- Departamento de Ciências Biológicas, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
| | - Katia M.P.M.B. Ferraz
- Departamento de Ciências Florestais, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
| | - Elisandra A. Chiquito
- Departamento de Ciências Biológicas, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, São Paulo, Brazil
- Departamento de Ciências Biológicas, Centro de Ciências Humanas e Naturais, Universidade Federal do Espírito Santo, Vitória, Espírito Santo, Brazil
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Abstract
Morphological integration predicts that correlated characters will coevolve; thus, each distinct suite of correlated characters might be expected to evolve according to a separate clock or 'pacemaker'. Characters in a large morphological dataset for mammals were found to be evolving according to seven separate clocks, each distinct from the molecular clock. Total-evidence tip-dating using these multiple clocks inflated divergence time estimates, but potentially improved topological inference. In particular, single-clock analyses placed several meridiungulates and condylarths in a heterodox position as stem placentals, but multi-clock analyses retrieved a more plausible and orthodox position within crown placentals. Several shortcomings (including uneven character sampling) currently impact upon the accuracy of total-evidence dating, but this study suggests that when sufficiently large and appropriately constructed phenotypic datasets become more commonplace, multi-clock approaches are feasible and can affect both divergence dates and phylogenetic relationships.
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Affiliation(s)
- Michael S Y Lee
- Earth Sciences Section, South Australian Museum, North Terrace, Adelaide, South Australia 5000, Australia School of Biological Sciences, Flinders University, GPO Box 2100, Adelaide, South Australia 5001, Australia
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Holland PWH, Marlétaz F, Maeso I, Dunwell TL, Paps J. New genes from old: asymmetric divergence of gene duplicates and the evolution of development. Philos Trans R Soc Lond B Biol Sci 2017; 372:rstb.2015.0480. [PMID: 27994121 DOI: 10.1098/rstb.2015.0480] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/22/2016] [Indexed: 01/10/2023] Open
Abstract
Gene duplications and gene losses have been frequent events in the evolution of animal genomes, with the balance between these two dynamic processes contributing to major differences in gene number between species. After gene duplication, it is common for both daughter genes to accumulate sequence change at approximately equal rates. In some cases, however, the accumulation of sequence change is highly uneven with one copy radically diverging from its paralogue. Such 'asymmetric evolution' seems commoner after tandem gene duplication than after whole-genome duplication, and can generate substantially novel genes. We describe examples of asymmetric evolution in duplicated homeobox genes of moths, molluscs and mammals, in each case generating new homeobox genes that were recruited to novel developmental roles. The prevalence of asymmetric divergence of gene duplicates has been underappreciated, in part, because the origin of highly divergent genes can be difficult to resolve using standard phylogenetic methods.This article is part of the themed issue 'Evo-devo in the genomics era, and the origins of morphological diversity'.
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Affiliation(s)
- Peter W H Holland
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Ferdinand Marlétaz
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.,Molecular Genetics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan
| | - Ignacio Maeso
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.,Centro Andaluz de Biología del Desarrollo, Consejo Superior de Investigaciones Científicas/Universidad Pablo de Olavide, 41013 Sevilla, Spain
| | - Thomas L Dunwell
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Jordi Paps
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.,School of Biological Sciences, University of Essex, Colchester, Essex, UK
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