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Huang Y, Yin L, Sallam AH, Heinen S, Li L, Beaubien K, Dill-Macky R, Dong Y, Steffenson BJ, Smith KP, Muehlbauer GJ. Genetic dissection of a pericentromeric region of barley chromosome 6H associated with Fusarium head blight resistance, grain protein content and agronomic traits. Theor Appl Genet 2021; 134:3963-3981. [PMID: 34455452 DOI: 10.1007/s00122-021-03941-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 08/18/2021] [Indexed: 06/13/2023]
Abstract
Fine mapping of barley 6H pericentromeric region identified FHB QTL with opposite effects, and high grain protein content was associated with increased FHB severity. Resistance to Fusarium head blight (FHB), kernel discoloration (KD), deoxynivalenol (DON) accumulation and grain protein content (GPC) are important traits for breeding malting barley varieties. Previous work mapped a Chevron-derived FHB QTL to the pericentromeric region of 6H, coinciding with QTL for KD resistance and GPC. The Chevron allele reduced FHB and KD, but unfavorably increased GPC. To determine whether the correlations are caused by linkage or pleiotropy, a fine mapping approach was used to dissect the QTL underlying these quality and disease traits. Two populations, referred to as Gen10 and Gen10/Lacey, derived from a recombinant near-isogenic line (rNIL) were developed. Recombinants were phenotyped for FHB, KD, DON, GPC and other agronomic traits. Three FHB, two DON and two KD QTLs were identified. One of the three FHB QTLs, one DON QTL and one KD QTL were coincident with the GPC QTL, which contains the Hv-NAM1 locus affecting grain protein accumulation. The Chevron allele at the GPC QTL increased GPC and FHB and decreased DON and KD. The other two FHB QTL and the other DON and KD QTL were identified in the regions flanking the Hv-NAM1 locus, and the Chevron alleles decreased FHB, DON and KD. Our results suggested that the QTL associated with FHB, KD, DON and GPC in the pericentromeric region of 6H was controlled by both pleiotropy and tightly linked loci. The rNILs identified in this study with low FHB severity and moderate GPC may be used for breeding malting barley cultivars.
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Affiliation(s)
- Yadong Huang
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA
| | - Lu Yin
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA
| | - Ahmad H Sallam
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA
| | - Shane Heinen
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA
| | - Lin Li
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Karen Beaubien
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA
| | - Ruth Dill-Macky
- Department of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA
| | - Yanhong Dong
- Department of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA
| | - Brian J Steffenson
- Department of Plant Pathology, University of Minnesota, St. Paul, MN, 55108, USA
| | - Kevin P Smith
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA
| | - Gary J Muehlbauer
- Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, 55108, USA.
- Department of Plant and Microbial Biology, University of Minnesota, St. Paul, MN, 55108, USA.
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Tan C, Zhou X, Zhang P, Wang Z, Wang D, Guo W, Yun F. Predicting grain protein content of field-grown winter wheat with satellite images and partial least square algorithm. PLoS One 2020; 15:e0228500. [PMID: 32160185 PMCID: PMC7065814 DOI: 10.1371/journal.pone.0228500] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2019] [Accepted: 01/16/2020] [Indexed: 01/20/2023] Open
Abstract
Remote sensing has been used as an important means of modern crop production monitoring, especially for wheat quality prediction in the middle and late growth period. In order to further improve the accuracy of estimating grain protein content (GPC) through remote sensing, this study analyzed the quantitative relationship between 14 remote sensing variables obtained from images of environment and disaster monitoring and forecasting small satellite constellation system equipped with wide-band CCD sensors (abbreviated as HJ-CCD) and field-grown winter wheat GPC. The 14 remote sensing variables were normalized difference vegetation index (NDVI), soil-adjusted vegetation index (SAVI), optimized soil-adjusted vegetation index (OSAVI), nitrogen reflectance index (NRI), green normalized difference vegetation index (GNDVI), structure intensive pigment index (SIPI), plant senescence reflectance index (PSRI), enhanced vegetation index (EVI), difference vegetation index (DVI), ratio vegetation index (RVI), Rblue (reflectance at blue band), Rgreen (reflectance at green band), Rred (reflectance at red band) and Rnir (reflectance at near infrared band). The partial least square (PLS) algorithm was used to construct and validate the multivariate remote sensing model of predicting wheat GPC. The research showed a close relationship between wheat GPC and 12 remote sensing variables other than Rblue and Rgreen of the spectral reflectance bands. Among them, except PSRI and Rblue, Rgreen and Rred, other remote sensing vegetation indexes had significant multiple correlations. The optimal principal components of PLS model used to predict wheat GPC were: NDVI, SIPI, PSRI and EVI. All these were sensitive variables to predict wheat GPC. Through modeling set and verification set evaluation, GPC prediction models' coefficients of determination (R2) were 0.84 and 0.8, respectively. The root mean square errors (RMSE) were 0.43% and 0.54%, respectively. It indicated that the PLS algorithm model predicted wheat GPC better than models for linear regression (LR) and principal components analysis (PCA) algorithms. The PLS algorithm model's prediction accuracies were above 90%. The improvement was by more than 20% than the model for LR algorithm and more than 15% higher than the model for PCA algorithm. The results could provide an effective way to improve the accuracy of remotely predicting winter wheat GPC through satellite images, and was conducive to large-area application and promotion.
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Affiliation(s)
- Changwei Tan
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou, China
- * E-mail: (C.T.); (F.Y.); (W.G.)
| | - Xinxing Zhou
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Pengpeng Zhang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Zhixiang Wang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Dunliang Wang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou, China
| | - Wenshan Guo
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops/Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou, China
- * E-mail: (C.T.); (F.Y.); (W.G.)
| | - Fei Yun
- National Tobacco Cultivation and Physiology and Biochemistry Research Centre/Key Laboratory for Tobacco Cultivation of Tobacco Industry, Henan Agricultural University, Zhengzhou, China
- * E-mail: (C.T.); (F.Y.); (W.G.)
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Asseng S, Martre P, Maiorano A, Rötter RP, O'Leary GJ, Fitzgerald GJ, Girousse C, Motzo R, Giunta F, Babar MA, Reynolds MP, Kheir AMS, Thorburn PJ, Waha K, Ruane AC, Aggarwal PK, Ahmed M, Balkovič J, Basso B, Biernath C, Bindi M, Cammarano D, Challinor AJ, De Sanctis G, Dumont B, Eyshi Rezaei E, Fereres E, Ferrise R, Garcia-Vila M, Gayler S, Gao Y, Horan H, Hoogenboom G, Izaurralde RC, Jabloun M, Jones CD, Kassie BT, Kersebaum KC, Klein C, Koehler AK, Liu B, Minoli S, Montesino San Martin M, Müller C, Naresh Kumar S, Nendel C, Olesen JE, Palosuo T, Porter JR, Priesack E, Ripoche D, Semenov MA, Stöckle C, Stratonovitch P, Streck T, Supit I, Tao F, Van der Velde M, Wallach D, Wang E, Webber H, Wolf J, Xiao L, Zhang Z, Zhao Z, Zhu Y, Ewert F. Climate change impact and adaptation for wheat protein. Glob Chang Biol 2019; 25:155-173. [PMID: 30549200 DOI: 10.1111/gcb.14481] [Citation(s) in RCA: 126] [Impact Index Per Article: 25.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 09/06/2018] [Indexed: 05/20/2023]
Abstract
Wheat grain protein concentration is an important determinant of wheat quality for human nutrition that is often overlooked in efforts to improve crop production. We tested and applied a 32-multi-model ensemble to simulate global wheat yield and quality in a changing climate. Potential benefits of elevated atmospheric CO2 concentration by 2050 on global wheat grain and protein yield are likely to be negated by impacts from rising temperature and changes in rainfall, but with considerable disparities between regions. Grain and protein yields are expected to be lower and more variable in most low-rainfall regions, with nitrogen availability limiting growth stimulus from elevated CO2 . Introducing genotypes adapted to warmer temperatures (and also considering changes in CO2 and rainfall) could boost global wheat yield by 7% and protein yield by 2%, but grain protein concentration would be reduced by -1.1 percentage points, representing a relative change of -8.6%. Climate change adaptations that benefit grain yield are not always positive for grain quality, putting additional pressure on global wheat production.
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Affiliation(s)
- Senthold Asseng
- Agricultural & Biological Engineering Department, University of Florida, Gainesville, Florida
| | - Pierre Martre
- LEPSE, Université Montpellier INRA, Montpellier SupAgro, Montpellier, France
| | - Andrea Maiorano
- LEPSE, Université Montpellier INRA, Montpellier SupAgro, Montpellier, France
| | - Reimund P Rötter
- Tropical Plant Production and Agricultural Systems Modelling (TROPAGS), University of Göttingen, Göttingen, Germany
- Centre of Biodiversity and Sustainable Land Use (CBL), University of Göttingen, Göttingen, Germany
| | - Garry J O'Leary
- Department of Economic Development Jobs, Transport and Resources, Grains Innovation Park, Agriculture Victoria Research, Horsham, Victoria, Australia
| | - Glenn J Fitzgerald
- Department of Economic Development, Jobs, Transport and Resources, Agriculture Victoria Research, Horsham, Victoria, Australia
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Creswick, Victoria, Australia
| | | | - Rosella Motzo
- Department of Agricultural Sciences, University of Sassari, Sassari, Italy
| | - Francesco Giunta
- Department of Agricultural Sciences, University of Sassari, Sassari, Italy
| | - M Ali Babar
- World Food Crops Breeding, Department of Agronomy, IFAS, University of Florida, Gainesville, Florida
| | | | - Ahmed M S Kheir
- Soils, Water and Environment Research Institute, Agricultural Research Center, Giza, Egypt
| | | | - Katharina Waha
- CSIRO Agriculture and Food, Brisbane, Queensland, Australia
| | - Alex C Ruane
- NASA Goddard Institute for Space Studies, New York, New York
| | - Pramod K Aggarwal
- CGIAR Research Program on Climate Change, Agriculture and Food Security, BISA-CIMMYT, New Delhi, India
| | - Mukhtar Ahmed
- Biological Systems Engineering, Washington State University, Pullman, Washington
- Department of Agronomy, Pir Mehr Ali Shah Arid Agriculture University, Rawalpindi, Pakistan
| | - Juraj Balkovič
- International Institute for Applied Systems Analysis, Ecosystem Services and Management Program, Laxenburg, Austria
- Department of Soil Science, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava, Slovakia
| | - Bruno Basso
- Department of Earth and Environmental Sciences, Michigan State University, East Lansing, Michigan
- W.K. Kellogg Biological Station, Michigan State University, East Lansing, Michigan
| | - Christian Biernath
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany
| | - Marco Bindi
- Department of Agri-food Production and Environmental Sciences (DISPAA), University of Florence, Florence, Italy
| | | | - Andrew J Challinor
- Institute for Climate and Atmospheric Science, School of Earth and Environment, University of Leeds, Leeds, UK
- Collaborative Research Program from CGIAR and Future Earth on Climate Change, Agriculture and Food Security (CCAFS), International Centre for Tropical Agriculture (CIAT), Cali, Colombia
| | | | - Benjamin Dumont
- Department Terra & AgroBioChem, Gembloux Agro-Bio Tech, University of Liege, Gembloux, Belgium
| | - Ehsan Eyshi Rezaei
- Institute of Crop Science and Resource Conservation INRES, University of Bonn, Bonn, Germany
- Department of Crop Sciences, University of Göttingen, Göttingen, Germany
| | | | - Roberto Ferrise
- Department of Agri-food Production and Environmental Sciences (DISPAA), University of Florence, Florence, Italy
| | | | - Sebastian Gayler
- Institute of Soil Science and Land Evaluation, University of Hohenheim, Stuttgart, Germany
| | - Yujing Gao
- Agricultural & Biological Engineering Department, University of Florida, Gainesville, Florida
| | - Heidi Horan
- CSIRO Agriculture and Food, Brisbane, Queensland, Australia
| | - Gerrit Hoogenboom
- Agricultural & Biological Engineering Department, University of Florida, Gainesville, Florida
- Institute for Sustainable Food Systems, University of Florida, Gainesville, Florida
| | - R César Izaurralde
- Department of Geographical Sciences, University of Maryland, College Park, Maryland
- Texas A&M AgriLife Research and Extension Center, Texas A&M University, Temple, Texas
| | - Mohamed Jabloun
- Department of Agroecology, Aarhus University, Tjele, Denmark
| | - Curtis D Jones
- Department of Geographical Sciences, University of Maryland, College Park, Maryland
| | - Belay T Kassie
- Agricultural & Biological Engineering Department, University of Florida, Gainesville, Florida
| | | | - Christian Klein
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany
| | - Ann-Kristin Koehler
- Institute for Climate and Atmospheric Science, School of Earth and Environment, University of Leeds, Leeds, UK
| | - Bing Liu
- Agricultural & Biological Engineering Department, University of Florida, Gainesville, Florida
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Sara Minoli
- Potsdam Institute for Climate Impact Research, Member of the Leibniz Association, Potsdam, Germany
| | | | - Christoph Müller
- Potsdam Institute for Climate Impact Research, Member of the Leibniz Association, Potsdam, Germany
| | - Soora Naresh Kumar
- Centre for Environment Science and Climate Resilient Agriculture, Indian Agricultural Research Institute, IARI PUSA, New Delhi, India
| | - Claas Nendel
- Leibniz Centre for Agricultural Landscape Research, Müncheberg, Germany
| | | | - Taru Palosuo
- Montpellier SupAgro, INRA, CIHEAM-IAMM, CIRAD, University Montpellier, Montpellier, France
| | - John R Porter
- Plant & Environment Sciences, University Copenhagen, Taastrup, Denmark
- Lincoln University, Lincoln, New Zealand
- Montpellier SupAgro, INRA, CIHEAM-IAMM, CIRAD, University Montpellier, Montpellier, France
| | - Eckart Priesack
- Institute of Biochemical Plant Pathology, Helmholtz Zentrum München-German Research Center for Environmental Health, Neuherberg, Germany
| | | | | | - Claudio Stöckle
- Biological Systems Engineering, Washington State University, Pullman, Washington
| | | | - Thilo Streck
- Institute of Soil Science and Land Evaluation, University of Hohenheim, Stuttgart, Germany
| | - Iwan Supit
- Water & Food and Water Systems & Global Change Group, Wageningen University, Wageningen, The Netherlands
| | - Fulu Tao
- Natural Resources Institute Finland (Luke), Helsinki, Finland
- Institute of Geographical Sciences and Natural Resources Research, Chinese Academy of Science, Beijing, China
| | | | | | - Enli Wang
- CSIRO Agriculture and Food, Canberra, Australian Capital Territory, Australia
| | - Heidi Webber
- Institute of Crop Science and Resource Conservation INRES, University of Bonn, Bonn, Germany
- Leibniz Centre for Agricultural Landscape Research, Müncheberg, Germany
| | - Joost Wolf
- Plant Production Systems, Wageningen University, Wageningen, The Netherlands
| | - Liujun Xiao
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Zhao Zhang
- State Key Laboratory of Earth Surface Processes and Resource Ecology, Faculty of Geographical Science, Beijing Normal University, Beijing, China
| | - Zhigan Zhao
- CSIRO Agriculture and Food, Canberra, Australian Capital Territory, Australia
- Department of Agronomy and Biotechnology, China Agricultural University, Beijing, China
| | - Yan Zhu
- National Engineering and Technology Center for Information Agriculture, Key Laboratory for Crop System Analysis and Decision Making, Ministry of Agriculture, Jiangsu Key Laboratory for Information Agriculture, Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing Agricultural University, Nanjing, China
| | - Frank Ewert
- Institute of Crop Science and Resource Conservation INRES, University of Bonn, Bonn, Germany
- Leibniz Centre for Agricultural Landscape Research, Müncheberg, Germany
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