1
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Güney G, Cedden D, Hänniger S, Hegedus DD, Heckel DG, Toprak U. Peritrophins are involved in the defense against Bacillus thuringiensis and nucleopolyhedrovirus formulations in Spodoptera littoralis (Lepidoptera: Noctuidae). Insect Biochem Mol Biol 2024; 166:104073. [PMID: 38215915 DOI: 10.1016/j.ibmb.2024.104073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 01/07/2024] [Accepted: 01/08/2024] [Indexed: 01/14/2024]
Abstract
The peritrophic matrix (or peritrophic membrane, PM) is present in most insects where it acts as a barrier to mechanical insults and pathogens, as well as a facilitator of digestive processes. The PM is formed by the binding of structural PM proteins, referred to as peritrophins, to chitin fibrils and spans the entire midgut in lepidopterans. To investigate the role of peritrophins in a highly polyphagous lepidopteran pest, namely the cotton leafworm (Spodoptera littoralis), we generated Insect Intestinal Mucin (IIM-) and non-mucin Peritrophin (PER-) mutant strains via CRISPR/Cas9 mutagenesis. Both strains exhibited deformed PMs and retarded developmental rates. Bioassays conducted with Bacillus thuringiensis (Bt) and nucleopolyhedrovirus (SpliNPV) formulations showed that both the IIM- and PER- mutant larvae were more susceptible to these bioinsecticides compared to the wild-type (WT) larvae with intact PM. Interestingly, the provision of chitin-binding agent Calcofluor (CF) in the diet lowered the toxicity of Bt formulations in both WT and IIM- larvae and the protective effect of CF was significantly lower in PER- larvae. This suggested that the interaction of CF with PER is responsible for Bt resistance mediated by CF. In contrast, the provision of CF caused increased susceptibility to SpliNPV in both mutants and WT larvae. The study showed the importance of peritrophins in the defense against pathogens in S. littoralis and revealed novel insights into CF-mediated resistance to Cry toxin.
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Affiliation(s)
- Gözde Güney
- Agricultural Entomology, Department of Crop Sciences, University of Göttingen, Göttingen, Germany; Max Planck Institute for Chemical Ecology, Department of Entomology, Jena, Germany; Ankara University, Molecular Entomology Lab., Dept. of Plant Protection, Faculty of Agriculture, Ankara, Turkey
| | - Doga Cedden
- Department of Evolutionary Developmental Genetics, Johann-Friedrich-Blumenbach Institute, GZMB, University of Göttingen, Göttingen, Germany; Ankara University, Molecular Entomology Lab., Dept. of Plant Protection, Faculty of Agriculture, Ankara, Turkey
| | - Sabine Hänniger
- Max Planck Institute for Chemical Ecology, Department of Entomology, Jena, Germany
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada; University of Saskatchewan, Department of Food and Bioproduct Sciences, College of Agriculture and Bioresources, Saskatoon, SK, Canada
| | - David G Heckel
- Max Planck Institute for Chemical Ecology, Department of Entomology, Jena, Germany.
| | - Umut Toprak
- Ankara University, Molecular Entomology Lab., Dept. of Plant Protection, Faculty of Agriculture, Ankara, Turkey.
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2
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Mori BA, Coutu C, Erlandson MA, Hegedus DD. Characterization of the swede midge, Contarinia nasturtii, first instar larval salivary gland transcriptome. Curr Res Insect Sci 2023; 4:100064. [PMID: 37575317 PMCID: PMC10415697 DOI: 10.1016/j.cris.2023.100064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 06/09/2023] [Accepted: 07/11/2023] [Indexed: 08/15/2023]
Abstract
Proteins in saliva of gall-forming insect larvae govern insect-host plant interactions. Contarinia nasturtii, the swede midge, is a pest of brassicaceous vegetables (cabbage, cauliflower, broccoli) and canola. We examined the salivary gland (SG) transcriptome of first instar larvae reared on Brassica napus and catalogued genes encoding secreted proteins that may contribute to the initial stages of larval establishment, the synthesis of plant growth hormones, extra-oral digestion and evasion of host defenses. A significant portion of the secreted proteins with unknown functions were unique to C. nasturtii and were often members of larger gene families organized in genomic clusters with conservation patterns suggesting that they are undergoing selection.
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Affiliation(s)
- Boyd A. Mori
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB T6G 2P5, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, SK S7N 0×2, Canada
| | - Martin A. Erlandson
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, SK S7N 0×2, Canada
| | - Dwayne D. Hegedus
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, SK S7N 0×2, Canada
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3
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Perera SP, McIntosh T, Coutu C, Tyler RT, Hegedus DD, Wanasundara JPD. Profiling and characterization of
Camelina sativa
(
L
.)
Crantz
meal proteins. J AM OIL CHEM SOC 2022. [DOI: 10.1002/aocs.12634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Suneru P. Perera
- Agriculture and Agri‐Food Canada Saskatoon Research and Development Centre Saskatoon Canada
- Department of Food and Bioproduct Sciences University of Saskatchewan Saskatoon Canada
| | - Tara McIntosh
- Agriculture and Agri‐Food Canada Saskatoon Research and Development Centre Saskatoon Canada
| | - Cathy Coutu
- Agriculture and Agri‐Food Canada Saskatoon Research and Development Centre Saskatoon Canada
| | - Robert T. Tyler
- Department of Food and Bioproduct Sciences University of Saskatchewan Saskatoon Canada
| | - Dwayne D. Hegedus
- Agriculture and Agri‐Food Canada Saskatoon Research and Development Centre Saskatoon Canada
- Department of Food and Bioproduct Sciences University of Saskatchewan Saskatoon Canada
| | - Janitha P. D. Wanasundara
- Agriculture and Agri‐Food Canada Saskatoon Research and Development Centre Saskatoon Canada
- Department of Food and Bioproduct Sciences University of Saskatchewan Saskatoon Canada
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4
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Buchwaldt L, Garg H, Puri KD, Durkin J, Adam J, Harrington M, Liabeuf D, Davies A, Hegedus DD, Sharpe AG, Gali KK. Sources of genomic diversity in the self-fertile plant pathogen, Sclerotinia sclerotiorum, and consequences for resistance breeding. PLoS One 2022; 17:e0262891. [PMID: 35130285 PMCID: PMC8820597 DOI: 10.1371/journal.pone.0262891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Accepted: 01/09/2022] [Indexed: 11/18/2022] Open
Abstract
The ascomycete, Sclerotinia sclerotiorum, has a broad host range and causes yield loss in dicotyledonous crops world wide. Genomic diversity was determined in a population of 127 isolates obtained from individual canola (Brassica napus) fields in western Canada. Genotyping with 39 simple sequence repeat (SSR) markers revealed each isolate was a unique haplotype. Analysis of molecular variance showed 97% was due to isolate and 3% due to geographical location. Testing of mycelium compatibility among 133 isolates identified clones of mutually compatible isolates with 86–95% similar SSR haplotype, whereas incompatible isolates were highly diverse. In the Province of Manitoba, 61% of isolates were compatible forming clones and stings of pairwise compatible isolates not described before. In contrast, only 35% of isolates were compatible in Alberta without forming clones and strings, while 39% were compatible in Saskatchewan with a single clone, but no strings. These difference can be explained by wetter growing seasons and more susceptible crop species in Manitoba favouring frequent mycelium interaction and more life cycles over time, which might also explain similar differences observed in other geographical areas and host crops. Analysis of linkage disequilibrium rejected random recombination, consistent with a self-fertile fungus, restricted outcrossing due to mycelium incompatibility, and only a single annual opportunity for genomic recombination during meiosis in the ascospore stage between non-sister chromatids in the rare event nuclei from different isolates come together. More probable sources of genomic diversity is slippage during DNA replication and point mutation affecting single nucleotides that accumulate and likely increase mycelium incompatibility in a population over time. A phylogenetic tree based on SSR haplotype grouped isolates into 17 sub-populations. Aggressiveness was tested by inoculating one isolate from each sub-population onto B. napus lines with quantitative resistance. Analysis of variance was significant for isolate, line, and isolate by line interaction. These isolates represent the genomic and pathogenic diversity in western Canada, and are suitable for resistance screening in canola breeding programs.
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Affiliation(s)
- Lone Buchwaldt
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
- * E-mail:
| | - Harsh Garg
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Krishna D. Puri
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Jonathan Durkin
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Jennifer Adam
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Myrtle Harrington
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Debora Liabeuf
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Alan Davies
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Dwayne D. Hegedus
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, Saskatoon, Canada
| | - Andrew G. Sharpe
- Global Institute for Food Security, University of Saskatchewan, Saskatoon, Canada
| | - Krishna Kishore Gali
- Department of Plant Sciences, Crop Development Centre, University of Saskatchewan, Saskatoon, Canada
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5
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Doğan C, Güney G, Güzel KK, Can A, Hegedus DD, Toprak U. What You Eat Matters: Nutrient Inputs Alter the Metabolism and Neuropeptide Expression in Egyptian Cotton Leaf Worm, Spodoptera littoralis (Lepidoptera: Noctuidae). Front Physiol 2021; 12:773688. [PMID: 34803746 PMCID: PMC8600137 DOI: 10.3389/fphys.2021.773688] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Accepted: 10/05/2021] [Indexed: 12/13/2022] Open
Abstract
Lipids and carbohydrates are the two primary energy sources for both animals and insects. Energy homeostasis is under strict control by the neuroendocrine system, and disruption of energy homeostasis leads to the development of various disorders, such as obesity, diabetes, fatty liver syndrome, and cardiac dysfunction. One critical factor in this respect is feeding habits and diet composition. Insects are good models to study the physiological and biochemical background of the effect of diet on energy homeostasis and related disorders; however, most studies are based on a single model species, Drosophila melanogaster. In the current study, we examined the effects of four different diets, high fat (HFD), high sugar (HSD), calcium-rich (CRD), and a plant-based (PBD) on energy homeostasis in younger (third instar) and older (fifth instar) larvae of the Egyptian cotton leafworm, Spodoptera littoralis (Lepidoptera: Noctuidae) in comparison to a regular artificial bean diet. Both HSD and HFD led to weight gain, while CRD had the opposite effect and PBD had no effect in fifth instar larvae and pupae. The pattern was the same for HSD and CRD in third instar larvae while a reduction in weight was detected with HFD and PBD. Larval development was shortest with the HSD, while HFD, CRD, and PBD led to retardation compared to the control. Triglyceride (TG) levels were higher with HFD, HSD, and PBD, with larger lipid droplet sizes, while CRD led to a reduction of TG levels and lipid droplet size. Trehalose levels were highest with HSD, while CRD led to a reduction at third instar larvae, and HFD and PBD had no effect. Fifth instar larvae had similar levels of trehalose with all diets. There was no difference in the expression of the genes encoding neuropeptides SpoliAKH and SpoliILP1-2 with different diets in third instar larvae, while all three genes were expressed primarily with HSD, and SpolisNPF was primarily expressed with HFD in fifth instar larvae. In summary, different diet treatments alter the development of insects, and energy and metabolic pathways through the regulation of peptide hormones.
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Affiliation(s)
- Cansu Doğan
- Molecular Entomology Laboratory, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
| | - Gözde Güney
- Molecular Entomology Laboratory, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
| | - Kardelen K Güzel
- Molecular Entomology Laboratory, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
| | - Alp Can
- Laboratory for Stem Cells and Reproductive Cell Biology, Department of Histology and Embryology, School of Medicine, Ankara University, Ankara, Turkey
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada.,Department of Food and Bioproduct Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, SK, Canada
| | - Umut Toprak
- Molecular Entomology Laboratory, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
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6
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Huang A, Coutu C, Harrington M, Rozwadowski K, Hegedus DD. Engineering a feedback inhibition-insensitive plant dihydrodipicolinate synthase to increase lysine content in Camelina sativa seeds. Transgenic Res 2021; 31:131-148. [PMID: 34802109 PMCID: PMC8821502 DOI: 10.1007/s11248-021-00291-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Accepted: 11/11/2021] [Indexed: 11/28/2022]
Abstract
Camelina sativa (camelina) is emerging as an alternative oilseed crop due to its short growing cycle, low input requirements, adaptability to less favorable growing environments and a seed oil profile suitable for biofuel and industrial applications. Camelina meal and oil are also registered for use in animal and fish feeds; however, like meals derived from most cereals and oilseeds, it is deficient in certain essential amino acids, such as lysine. In higher plants, the reaction catalyzed by dihydrodipicolinate synthase (DHDPS) is the first committed step in the biosynthesis of lysine and is subject to regulation by lysine through feedback inhibition. Here, we report enhancement of lysine content in C. sativa seed via expression of a feedback inhibition-insensitive form of DHDPS from Corynebacterium glutamicums (CgDHDPS). Two genes encoding C. sativa DHDPS were identified and the endogenous enzyme is partially insensitive to lysine inhibition. Site-directed mutagenesis was used to examine the impact of alterations, alone and in combination, present in lysine-desensitized DHDPS isoforms from Arabidopsis thaliana DHDPS (W53R), Nicotiana tabacum (N80I) and Zea mays (E84K) on C. sativa DHDPS lysine sensitivity. When introduced alone, each of the alterations decreased sensitivity to lysine; however, enzyme specific activity was also affected. There was evidence of molecular or structural interplay between residues within the C. sativa DHDPS allosteric site as coupling of the W53R mutation with the N80V mutation decreased lysine sensitivity of the latter, but not to the level with the W53R mutation alone. Furthermore, the activity and lysine sensitivity of the triple mutant (W53R/N80V/E84T) was similar to the W53R mutation alone or the C. glutamicum DHDPS. The most active and most lysine-insensitive C. sativa DHDPS variant (W53R) was not inhibited by free lysine up to 1 mM, comparable to the C. glutamicums enzyme. Seed lysine content increased 13.6 -22.6% in CgDHDPS transgenic lines and 7.6–13.2% in the mCsDHDPS lines. The high lysine-accumulating lines from this work may be used to produce superior quality animal feed with improved essential amino acid profile.
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Affiliation(s)
- Alex Huang
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Myrtle Harrington
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Kevin Rozwadowski
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada. .,Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
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7
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Güney G, Cedden D, Hänniger S, Heckel DG, Coutu C, Hegedus DD, Mutlu DA, Suludere Z, Sezen K, Güney E, Toprak U. Silencing of an ABC transporter, but not a cadherin, decreases the susceptibility of Colorado potato beetle larvae to Bacillus thuringiensis ssp. tenebrionis Cry3Aa toxin. Arch Insect Biochem Physiol 2021; 108:e21834. [PMID: 34288075 DOI: 10.1002/arch.21834] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Revised: 06/24/2021] [Accepted: 07/02/2021] [Indexed: 06/13/2023]
Abstract
The Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae), is a major pest of potato plants worldwide and is notorious for its ability to develop resistance to insecticides. Cry3 toxins synthesized by Bacillus thuringiensis ssp. tenebrionis have been used successfully to manage this pest. Resistance to Cry toxins is a concerning problem for many insect pests; therefore, it is important to determine the mechanisms by which insects acquire resistance to these toxins. Cadherin-like and ABC transporter proteins have been implicated in the mode of action of Cry toxins as mutations in these genes render lepidopterans resistant to them; however, clear consensus does not exist on whether these proteins also play a role in Cry3 toxin activity and/or development of resistance in coleopterans. In the current study, we identified the L. decemlineata orthologues of the cadherin (LdCAD) and the ABCB transporter (LdABCB1) that have been implicated in the mode of action of Cry toxins in other coleopterans. Suppression of LdABCB1 via RNA interference reduced toxin-related larval mortality, whereas partial silencing of LdCAD did not. Our results suggest that the ABCB is involved in the mode of action of Cry3Aa toxins; however, no evidence was found to support the role of cadherin as a receptor of Cry3Aa in L. decemlineata.
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Affiliation(s)
- Gözde Güney
- Molecular Entomology Lab, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
- Max Planck Institute for Chemical Ecology, Jena, Germany
- Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada
| | - Doğa Cedden
- Molecular Entomology Lab, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
| | | | - David G Heckel
- Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada
| | | | | | - Kazım Sezen
- Department of Biology, Karadeniz Technical University, Trabzon, Turkey
| | - Ebru Güney
- Department of Biology, Karadeniz Technical University, Trabzon, Turkey
| | - Umut Toprak
- Molecular Entomology Lab, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
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8
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Gasmi L, Sieminska E, Okuno S, Ohta R, Coutu C, Vatanparast M, Harris S, Baldwin D, Hegedus DD, Theilmann DA, Kida A, Kawabata M, Sagawa S, Takatsuka J, Tateishi K, Watanabe K, Inoue MN, Kunimi Y, Kim Y, Erlandson MA, Herrero S, Nakai M. Horizontally transmitted parasitoid killing factor shapes insect defense to parasitoids. Science 2021; 373:535-541. [PMID: 34326235 DOI: 10.1126/science.abb6396] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 12/19/2020] [Accepted: 06/17/2021] [Indexed: 01/02/2023]
Abstract
Interkingdom competition occurs between hymenopteran parasitoids and insect viruses sharing the same insect hosts. It has been assumed that parasitoid larvae die with the death of the infected host or as result of competition for host resources. Here we describe a gene family, parasitoid killing factor (pkf), that encodes proteins toxic to parasitoids of the Microgastrinae group and determines parasitism success. Pkfs are found in several entomopathogenic DNA virus families and in some lepidopteran genomes. We provide evidence of equivalent and specific toxicity against endoparasites for PKFs found in entomopoxvirus, ascovirus, baculovirus, and Lepidoptera through a mechanism that elicits apoptosis in the cells of susceptible parasitoids. This highlights the evolutionary arms race between parasitoids, viruses, and their insect hosts.
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Affiliation(s)
- Laila Gasmi
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.,Department of Genetics and Institute of Biotechnology and Biomedicine (BIOTECMED), Universitat de València, Burjassot, 46100 Valencia, Spain
| | - Edyta Sieminska
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK S7N 5E2, Canada
| | - Shohei Okuno
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.,Arysta Life Science Corporation, Tsukuba, Ibaraki 305-0832, Japan
| | - Rie Ohta
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, 107 Science Place, Saskatoon, SK S7N 0X2, Canada
| | | | - Stephanie Harris
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, 107 Science Place, Saskatoon, SK S7N 0X2, Canada
| | - Doug Baldwin
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, 107 Science Place, Saskatoon, SK S7N 0X2, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, 107 Science Place, Saskatoon, SK S7N 0X2, Canada
| | - David A Theilmann
- Agriculture and Agri-Food Canada, Summerland Research and Development Centre, 4200 Highway #97 South, Summerland, BC V0H 1Z0, Canada
| | - Aki Kida
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.,Kumiai Chemical Industry Co., Ltd., Taitou, Tokyo 110-8782, Japan
| | - Mio Kawabata
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan
| | - Shiori Sagawa
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan
| | - Jun Takatsuka
- Forestry and Forest Products Research Institute, Forest Research and Management Organization, Matsunosato, Tsukuba, Ibaraki 305-8687, Japan
| | - Ken Tateishi
- National Agriculture and Food Research Organization, Kannondai 3-1-1, Tsukuba, Ibaraki 305-8517, Japan
| | - Kazuyo Watanabe
- National Agriculture and Food Research Organization, Kannondai 3-1-1, Tsukuba, Ibaraki 305-8517, Japan
| | - Maki N Inoue
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan
| | - Yasuhisa Kunimi
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan
| | - Yonggyun Kim
- Department of Plant Medicals, Andong National University, Andong 36729, Korea
| | - Martin A Erlandson
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK S7N 5E2, Canada. .,Agriculture and Agri-Food Canada, Saskatoon Research and Development Centre, 107 Science Place, Saskatoon, SK S7N 0X2, Canada
| | - Salvador Herrero
- Department of Genetics and Institute of Biotechnology and Biomedicine (BIOTECMED), Universitat de València, Burjassot, 46100 Valencia, Spain.
| | - Madoka Nakai
- Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan.
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9
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Doğan C, Hänniger S, Heckel DG, Coutu C, Hegedus DD, Crubaugh L, Groves RL, Mutlu DA, Suludere Z, Bayram Ş, Toprak U. Characterization of calcium signaling proteins from the fat body of the Colorado Potato Beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae): Implications for diapause and lipid metabolism. Insect Biochem Mol Biol 2021; 133:103549. [PMID: 33610660 DOI: 10.1016/j.ibmb.2021.103549] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 01/26/2021] [Accepted: 01/31/2021] [Indexed: 05/25/2023]
Abstract
Calcium (Ca2+) regulates many cellular and physiological processes from development to reproduction. Ca2+ is also an important factor in the metabolism of lipids, the primary energy source used during insect starvation and diapause. Ca2+ signaling proteins bind to Ca2+ and maintain intracellular Ca2+ levels. However, knowledge about Ca2+ signaling proteins is mostly restricted to the model Drosophila melanogaster and the response of Ca2+ signaling genes to starvation or diapause is not known. In this study, we identified three Ca2+ signaling proteins; the primary Ca2+ binding protein Calmodulin (LdCaM), phosphatase Calcineurin B (LdCaNB), and the senescence marker protein Regucalcin (LdRgN), from the fat body of the Colorado Potato Beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). This insect is a major pest of potato worldwide and overwinters under hibernation diapause as adults while utilizing lipids as the primary energy source. Putative EF-hand domains involved in Ca2+ binding were present in LdCaM, LdCaNB, but absent in LdRgN. LdCaM and LdCaNB were expressed in multiple tissues, while LdRgN was primarily expressed in the fat body. LdCaM was constitutively-expressed throughout larval development and at the adult stage. LdCaNB was primarily expressed in feeding larvae, and LdRgN in both feeding larvae and adults at comparable levels; however, both genes were down-regulated by molting. A response to starvation was observed only for LdRgN. Transcript abundance analysis in the entire body in relation to diapause revealed differential regulation with a general suppression during diapause, and higher mRNA levels in favor of females at post-diapause for LdCaM, and in favor of males at non-diapause for LdCaNB. Fat body-specific transcript abundance was not different between non-diapause and post-diapause for LdCaNB, but both LdCaM and LdRgN were down-regulated in males and both sexes, respectively by post-diapause. Silencing LdCaNB or LdRgN in larvae led to decreased fat content, indicating their involvement in lipid accumulation, while RNAi of LdCaM led to lethality.
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Affiliation(s)
- Cansu Doğan
- Ankara University, Molecular Entomology Lab., Dept. of Plant Protection, Faculty of Agriculture, Ankara, Turkey; Max Planck Institute for Chemical Ecology, Dept. of Entomology, Jena, Germany; Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada; Dept. of Entomology, University of Wisconsin-Madison, Madison, WI, USA
| | - Sabine Hänniger
- Max Planck Institute for Chemical Ecology, Dept. of Entomology, Jena, Germany
| | - David G Heckel
- Max Planck Institute for Chemical Ecology, Dept. of Entomology, Jena, Germany
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada
| | - Linda Crubaugh
- Dept. of Entomology, University of Wisconsin-Madison, Madison, WI, USA
| | - Russell L Groves
- Dept. of Entomology, University of Wisconsin-Madison, Madison, WI, USA
| | | | - Zekiye Suludere
- Gazi University, Faculty of Sciences, Department of Biology, Ankara, Turkey
| | - Şerife Bayram
- Ankara University, Molecular Entomology Lab., Dept. of Plant Protection, Faculty of Agriculture, Ankara, Turkey
| | - Umut Toprak
- Ankara University, Molecular Entomology Lab., Dept. of Plant Protection, Faculty of Agriculture, Ankara, Turkey.
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10
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Güney G, Toprak U, Hegedus DD, Bayram Ş, Coutu C, Bekkaoui D, Baldwin D, Heckel DG, Hänniger S, Cedden D, Mutlu DA, Suludere Z. A look into Colorado potato beetle lipid metabolism through the lens of lipid storage droplet proteins. Insect Biochem Mol Biol 2021; 133:103473. [PMID: 33010403 DOI: 10.1016/j.ibmb.2020.103473] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 09/01/2020] [Accepted: 09/17/2020] [Indexed: 06/11/2023]
Abstract
The Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae) inflicts serious damage to potato plants by feeding ravenously on their leaves. Adult L.decemlineata have a photoperiod-induced dormancy response, also known as diapause, which allows them to survive severe winter conditions by digging into soil. Most insects that undergo diapause accumulate abundant lipid reserves prior to diapause and utilize most of them during the diapause. This process is likely to be governed by the interplay of lipid storage droplet proteins (LSDs), also known as perilipins, with the help of other proteins. Here, genes encoding L. decemlineata LSD1 and LSD2 were identified. Both were expressed primarily in the fat body with LdLSD1 and LdLSD2 being primarily expressed in adult and larval stages, respectively. LdLSD1 was up-regulated in starving larvae, while LdLSD2 was primarily expressed in feeding larvae. The expression pattern of LdLSD1 in adults during feeding, diapause and post-diapause contrasted to the total body fat levels, while the expression pattern of LdLSD2 was positively correlated with total body fat levels. RNA interference (RNAi) of LdLSD2 in larvae suggested a core role for LSD2 in the protection/assembly of storage lipids as this treatment reduced overall lipid droplet volume. These data shed light on the functions of these proteins in L. decemlineata and their roles in both diapause and during starvation.
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Affiliation(s)
- Gözde Güney
- Ankara University, Molecular Entomology Lab. Faculty of Agriculture, Department of Plant Protection Diskapi Ankara, Turkey; Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada; Max Planck Institute for Chemical Ecology, Department of Entomology, Jena, Germany
| | - Umut Toprak
- Ankara University, Molecular Entomology Lab. Faculty of Agriculture, Department of Plant Protection Diskapi Ankara, Turkey.
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada
| | - Şerife Bayram
- Ankara University, Molecular Entomology Lab. Faculty of Agriculture, Department of Plant Protection Diskapi Ankara, Turkey
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada
| | - Diana Bekkaoui
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada
| | - Doug Baldwin
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK, Canada
| | - David G Heckel
- Max Planck Institute for Chemical Ecology, Department of Entomology, Jena, Germany
| | - Sabine Hänniger
- Max Planck Institute for Chemical Ecology, Department of Entomology, Jena, Germany
| | - Doğa Cedden
- Ankara University, Molecular Entomology Lab. Faculty of Agriculture, Department of Plant Protection Diskapi Ankara, Turkey
| | | | - Zekiye Suludere
- Gazi University, Faculty of Sciences, Department of Biology, Ankara, Turkey
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11
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Mori BA, Coutu C, Chen YH, Campbell EO, Dupuis JR, Erlandson MA, Hegedus DD. De Novo Whole-Genome Assembly of the Swede Midge (Contarinia nasturtii), a Specialist of Brassicaceae, Using Linked-Read Sequencing. Genome Biol Evol 2021; 13:evab036. [PMID: 33662122 PMCID: PMC8011032 DOI: 10.1093/gbe/evab036] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/21/2021] [Indexed: 12/24/2022] Open
Abstract
The swede midge, Contarinia nasturtii, is a cecidomyiid fly that feeds specifically on plants within the Brassicaceae. Plants in this family employ a glucosinolate-myrosinase defense system, which can be highly toxic to nonspecialist feeders. Feeding by C. nasturtii larvae induces gall formation, which can cause substantial yield losses thus making it a significant agricultural pest. A lack of genomic resources, in particular a reference genome, has limited deciphering the mechanisms underlying glucosinolate tolerance in C. nasturtii, which is of particular importance for managing this species. Here, we present an annotated, scaffolded reference genome of C. nasturtii using linked-read sequencing from a single individual and explore systems involved in glucosinolate detoxification. The C. nasturtii genome is similar in size and annotation completeness to that of the Hessian fly, Mayetiola destructor, but has greater contiguity. Several genes encoding enzymes involved in glucosinolate detoxification in other insect pests, including myrosinases, sulfatases, and glutathione S-transferases, were found, suggesting that C. nasturtii has developed similar strategies for feeding on Brassicaceae. The C. nasturtii genome will, therefore, be integral to continued research on plant-insect interactions in this system and contribute to effective pest management strategies.
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Affiliation(s)
- Boyd A Mori
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada
| | - Cathy Coutu
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada
| | - Yolanda H Chen
- Department of Plant and Soil Sciences, University of Vermont, Burlington, Vermont, USA
| | - Erin O Campbell
- Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, Alberta, Canada
| | - Julian R Dupuis
- Department of Entomology, University of Kentucky, Lexington, Kentucky, USA
| | - Martin A Erlandson
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada
| | - Dwayne D Hegedus
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada
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12
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Heydarian Z, Gruber M, Coutu C, Glick BR, Hegedus DD. Gene expression patterns in shoots of Camelina sativa with enhanced salinity tolerance provided by plant growth promoting bacteria producing 1-aminocyclopropane-1-carboxylate deaminase or expression of the corresponding acdS gene. Sci Rep 2021; 11:4260. [PMID: 33608579 PMCID: PMC7895925 DOI: 10.1038/s41598-021-83629-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 02/02/2021] [Indexed: 11/28/2022] Open
Abstract
Growth of plants in soil inoculated with plant growth promoting bacteria (PGPB) producing 1-aminocyclopropane-1-carboxylate (ACC) deaminase or expression of the corresponding acdS gene in transgenic lines reduces the decline in shoot length, shoot weight and photosynthetic capacity triggered by salt stress in Camelina sativa. Reducing the levels of ethylene attenuated the salt stress response as inferred from decreases in the expression of genes involved in development, senescence, chlorosis and leaf abscission that are highly induced by salt to levels that may otherwise have a negative effect on plant growth and productivity. Growing plants in soil treated with Pseudomonas migulae 8R6 negatively affected ethylene signaling, auxin and JA biosynthesis and signalling, but had a positive effect on the regulation of genes involved in GA signaling. In plants expressing acdS, the expression of the genes involved in auxin signalling was positively affected, while the expression of genes involved in cytokinin degradation and ethylene biosynthesis were negatively affected. Moreover, fine-tuning of ABA signaling appears to result from the application of ACC deaminase in response to salt treatment. Moderate expression of acdS under the control of the root specific rolD promoter or growing plants in soil treated with P. migulae 8R6 were more effective in reducing the expression of the genes involved in ethylene production and/or signaling than expression of acdS under the more active Cauliflower Mosaic Virus 35S promoter.
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Affiliation(s)
- Zohreh Heydarian
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada.,Department of Biotechnology, School of Agriculture, University of Shiraz, Bajgah, Shiraz, Fars, Iran
| | - Margaret Gruber
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Bernard R Glick
- Department of Biology, University of Waterloo, Waterloo, ON, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada. .,Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
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13
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Doğan C, Hänniger S, Heckel DG, Coutu C, Hegedus DD, Crubaugh L, Groves RL, Bayram Ş, Toprak U. Two calcium-binding chaperones from the fat body of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae) involved in diapause. Arch Insect Biochem Physiol 2021; 106:e21755. [PMID: 33118236 DOI: 10.1002/arch.21755] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 10/13/2020] [Accepted: 10/19/2020] [Indexed: 06/11/2023]
Abstract
Molecular chaperones are crucial for the correct folding of newly synthesized polypeptides, in particular, under stress conditions. Various studies have revealed the involvement of molecular chaperones, such as heat shock proteins, in diapause maintenance and starvation; however, the role of other chaperones in diapause and starvation relatively is unknown. In the current study, we identified two lectin-type chaperones with calcium affinity, a calreticulin (LdCrT) and a calnexin (LdCnX), that were present in the fat body of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae) during diapause. Both proteins possessed an N-globular domain, a P-arm domain, and a highly charged C-terminal domain, while an additional transmembrane domain was present in LdCnX. Phylogenetic analysis revealed distinction at the order level. Both genes were expressed in multiple tissues in larval and adult stages, and constitutively throughout development, though a starvation response was detected only for LdCrT. In females, diapause-related expression analysis in the whole body revealed an upregulation of both genes by post-diapause, but a downregulation by diapause only for LdCrT. By contrast, males revealed no alteration in their diapause-related expression pattern in the entire body for both genes. Fat body-specific expression analysis of both genes in relation to diapause revealed the same expression pattern with no alteration in females and downregulation in males by post-diapause. This study suggests that calcium-binding chaperones play similar and possibly gender-specific roles during diapause.
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Affiliation(s)
- Cansu Doğan
- Molecular Entomology Lab, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
- Department of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, Saskatchewan, Canada
- Department of Entomology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Sabine Hänniger
- Department of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - David G Heckel
- Department of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, Saskatchewan, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, Saskatchewan, Canada
| | - Linda Crubaugh
- Department of Entomology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Russell L Groves
- Department of Entomology, University of Wisconsin-Madison, Madison, Wisconsin, USA
| | - Şerife Bayram
- Molecular Entomology Lab, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
| | - Umut Toprak
- Molecular Entomology Lab, Department of Plant Protection, Faculty of Agriculture, Ankara University, Ankara, Turkey
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14
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Withana-Gamage TS, Hegedus DD, McIntosh TC, Coutu C, Qiu X, Wanasundara JPD. Subunit composition affects formation and stabilization of o/w emulsions by 11S seed storage protein cruciferin. Food Res Int 2020; 137:109387. [PMID: 33233089 DOI: 10.1016/j.foodres.2020.109387] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2019] [Revised: 05/29/2020] [Accepted: 06/02/2020] [Indexed: 10/24/2022]
Abstract
The 11S globulin cruciferin is the major storage protein in Brassicaceae/Cruciferae seeds and exists as a hexamer in its natural configuration. Arabidopsis thaliana cruciferin is composed of CRUA, CRUB and CRUC subunits. Wild type (WT) cruciferin and cruciferins composed only of identical CRUA, CRUB and CRUC subunits were examined for their ability to form and stabilize oil-in-water (o/w) emulsions. All proteins (0.9% at pH 7.4 and 2.0), except CRUC, formed stable canola oil or triolein emulsions with a dispersed phase volume fraction of 22-23%. A fine emulsion was formed by CRUB at pH 7.4 with droplet sizes of 6.8 and 8.6 μm for canola oil and triolein, respectively. The presence of 0.5 M NaCl reduced the level of adsorbed protein and protein load at the interface at pH 7.4, and resulted in emulsions that were less stable. Emulsions of CRUA and CRUB (pH 7.4, zero ionic strength, canola oil or triolein) had higher stability than emulsions with WT cruciferin up to 15 days after formation. CRUC formed a stable emulsion only at pH 2.0. The low solubility, low surface hydrophobicity and compact structure of the CRUC protein may contribute to its inferior emulsifying properties at neutral pH; however, acidic pH-induced dissociation of the hexameric assembly improved these properties. The abundance and exposure of hydrophobic residues in the hypervariable regions, extended loop regions, and solvent exposed surfaces of cruciferin are critical factors affecting o/w interface stabilization.
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Affiliation(s)
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK S7N 0X2, Canada; Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada
| | - Tara C McIntosh
- Agriculture and Agri-Food Canada, Saskatoon, SK S7N 0X2, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon, SK S7N 0X2, Canada
| | - Xiao Qiu
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada
| | - Janitha P D Wanasundara
- Agriculture and Agri-Food Canada, Saskatoon, SK S7N 0X2, Canada; Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada.
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15
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Seifbarghi S, Borhan MH, Wei Y, Ma L, Coutu C, Bekkaoui D, Hegedus DD. Receptor-Like Kinases BAK1 and SOBIR1 Are Required for Necrotizing Activity of a Novel Group of Sclerotinia sclerotiorum Necrosis-Inducing Effectors. Front Plant Sci 2020; 11:1021. [PMID: 32754179 PMCID: PMC7367142 DOI: 10.3389/fpls.2020.01021] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 06/22/2020] [Indexed: 05/03/2023]
Abstract
Sclerotinia sclerotiorum is a characteristic necrotrophic plant pathogen and is dependent on the induction of host cell death for nutrient acquisition. To identify necrosis-inducing effectors, the genome of S. sclerotiorum was scanned for genes encoding small, secreted, cysteine-rich proteins. These potential effectors were tested for their ability to induce necrosis in Nicotiana benthamiana via Agrobacterium-mediated expression and for cellular localization in host cells. Six novel proteins were discovered, of which all but one required a signal peptide for export to the apoplast for necrotizing activity. Virus-induced gene silencing revealed that the five necrosis-inducing effectors with a requirement for secretion also required the plant co-receptor-like kinases Brassinosteroid Insensitive 1-Associated Receptor Kinase 1 (BAK1) and Suppressor of BAK1-Interacting Receptor-like Kinase 1 (SOBIR1) for the induction of necrosis. S. sclerotiorum necrosis-inducing effector 2 (SsNE2) represented a new class of necrosis-inducing proteins as orthologs were identified in several other phytopathogenic fungi that were also capable of inducing necrosis. Substitution of conserved cysteine residues with alanine reduced, but did not abolish, the necrotizing activity of SsNE2 and full-length protein was required for function as peptides spanning the entire protein were unable to induce necrosis. These results illustrate the importance of necrosis-inducing effectors for S. sclerotiorum virulence and the role of host extracellular receptor(s) in effector-triggered susceptibility to this pathogen.
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Affiliation(s)
- Shirin Seifbarghi
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
| | | | - Yangdou Wei
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
| | - Lisong Ma
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | | | - Dwayne D. Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada
- *Correspondence: Dwayne D. Hegedus,
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16
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Hegedus DD, Toprak U, Erlandson M. Peritrophic matrix formation. J Insect Physiol 2019; 117:103898. [PMID: 31211963 DOI: 10.1016/j.jinsphys.2019.103898] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 06/10/2019] [Accepted: 06/10/2019] [Indexed: 06/09/2023]
Affiliation(s)
- Dwayne D Hegedus
- Molecular Genetics Section, Agriculture and Agri-Food Canada, Saskatoon, SK, Canada; Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
| | - Umut Toprak
- Molecular Genetics Section, Agriculture and Agri-Food Canada, Saskatoon, SK, Canada; Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada; Molecular Entomology Laboratory, College of Agriculture, Ankara University, Ankara, Turkey
| | - Martin Erlandson
- Molecular Genetics Section, Agriculture and Agri-Food Canada, Saskatoon, SK, Canada; Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
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17
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Erlandson MA, Toprak U, Hegedus DD. Role of the peritrophic matrix in insect-pathogen interactions. J Insect Physiol 2019; 117:103894. [PMID: 31175854 DOI: 10.1016/j.jinsphys.2019.103894] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 05/27/2019] [Accepted: 06/05/2019] [Indexed: 05/12/2023]
Abstract
The peritrophic matrix (PM) is an acellular chitin and glycoprotein layer that lines the invertebrate midgut. The PM has long been considered a physical as well as a biochemical barrier, protecting the midgut epithelium from abrasive food particles, digestive enzymes and pathogens infectious per os. This short review will focus on the latter function, as a barrier to pathogens infectious per os. We focus on the evidence confirming the role of the PM as protective barrier against pathogenic microorganisms of insects, mainly bacteria and viruses, as well as the evolution of a variety of mechanisms used by pathogens to overcome the PM barrier.
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Affiliation(s)
- Martin A Erlandson
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada; Department of Biology, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
| | - Umut Toprak
- Molecular Entomology Laboratory, Faculty of Agriculture, Ankara University, Ankara, Turkey
| | - Dwayne D Hegedus
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan, Canada; Department of Food and Bioproduct Science, University of Saskatchewan, Saskatoon, Saskatchewan, Canada
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18
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Lyzenga WJ, Harrington M, Bekkaoui D, Wigness M, Hegedus DD, Rozwadowski KL. CRISPR/Cas9 editing of three CRUCIFERIN C homoeologues alters the seed protein profile in Camelina sativa. BMC Plant Biol 2019; 19:292. [PMID: 31272394 PMCID: PMC6611024 DOI: 10.1186/s12870-019-1873-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 06/05/2019] [Indexed: 05/03/2023]
Abstract
BACKGROUND The oilseed Camelina sativa is grown for a range of applications, including for biofuel, biolubricants, and as a source of omega-3 fatty acids for the aquaculture feed industry. The seed meal co-product is used as a source of protein for animal feed; however, the low value of the meal hinders profitability and more widespread application of camelina. The nutritional quality of the seed meal is largely determined by the abundance of specific seed storage proteins and their amino acid composition. Manipulation of seed storage proteins has been shown to be an effective means for either adjustment of nutritional content of seeds or for enhancing accumulation of high-value recombinant proteins in seeds. RESULTS CRISPR/Cas9 gene editing technology was used to generate deletions in the first exon of the three homoeologous genes encoding the seed storage protein CRUCIFERIN C (CsCRUC), creating an identical premature stop-codon in each and resulting in a CsCRUC knockout line. The mutant alleles were detected by applying a droplet digital PCR drop-off assay. The quantitative nature of this technique is particularly valuable when applied to polyploid species because it can accurately determine the number of mutated alleles in a gene family. Loss of CRUC protein did not alter total seed protein content; however, the abundance of other cruciferin isoforms and other seed storage proteins was altered. Consequently, seed amino acid content was significantly changed with an increase in the proportion of alanine, cysteine and proline, and decrease of isoleucine, tyrosine and valine. CsCRUC knockout seeds did not have changed total oil content, but the fatty acid profile was significantly altered with increased relative abundance of all saturated fatty acids. CONCLUSIONS This study demonstrates the plasticity of the camelina seed proteome and establishes a CRUC-devoid line, providing a framework for modifying camelina seed protein composition. The results also illustrate a possible link between the composition of the seed proteome and fatty acid profile.
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Affiliation(s)
- Wendy J. Lyzenga
- Present address: Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK S7N 4J8 Canada
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2 Canada
| | - Myrtle Harrington
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2 Canada
| | - Diana Bekkaoui
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2 Canada
| | - Merek Wigness
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2 Canada
| | - Dwayne D. Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2 Canada
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A8 Canada
| | - Kevin L. Rozwadowski
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2 Canada
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19
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Erlandson MA, Mori BA, Coutu C, Holowachuk J, Olfert OO, Gariepy TD, Hegedus DD. Examining population structure of a bertha armyworm, Mamestra configurata (Lepidoptera: Noctuidae), outbreak in western North America: Implications for gene flow and dispersal. PLoS One 2019; 14:e0218993. [PMID: 31247053 PMCID: PMC6597092 DOI: 10.1371/journal.pone.0218993] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 06/13/2019] [Indexed: 12/01/2022] Open
Abstract
The bertha armyworm (BAW), Mamestra configurata, is a significant pest of canola (Brassica napus L. and B. rapa L.) in western North America that undergoes cyclical outbreaks every 6–8 years. During peak outbreaks millions of dollars are spent on insecticidal control and, even with control efforts, subsequent damage can result in losses worth millions of dollars. Despite the importance of this pest insect, information is lacking on the dispersal ability of BAW and the genetic variation of populations from across its geographic range which may underlie potential differences in their susceptibility to insecticides or pathogens. Here, we examined the genetic diversity of BAW populations during an outbreak across its geographic range in western North America. First, mitochondrial cytochrome oxidase 1 (CO1) barcode sequences were used to confirm species identification of insects captured in a network of pheromone traps across the range, followed by haplotype analyses. We then sequenced the BAW genome and used double-digest restriction site associated DNA sequencing, mapped to the genome, to identify 1000s of single nucleotide polymorphisms (SNP) markers. CO1 haplotype analysis identified 9 haplotypes distributed across 28 sample locations and three laboratory-reared colonies. Analysis of genotypic data from both the CO1 and SNP markers revealed little population structure across BAW’s vast range. The CO1 haplotype pattern showed a star-like phylogeny which is often associated with species whose population abundance and range has recently expanded and combined with pheromone trap data, indicates the outbreak may have originated from a single focal point in central Saskatchewan. The relatively recent introduction of canola and rapid expansion of the canola growing region across western North America, combined with the cyclical outbreaks of BAW caused by precipitous population crashes, has likely selected for a genetically homogenous BAW population adapted to this crop.
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Affiliation(s)
- Martin A. Erlandson
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK CANADA
- * E-mail: (MAE); (DDH)
| | - Boyd A. Mori
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK CANADA
| | - Cathy Coutu
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK CANADA
| | - Jennifer Holowachuk
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK CANADA
| | - Owen O. Olfert
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK CANADA
| | - Tara D. Gariepy
- London Research and Development Centre, Agriculture and Agri-Food Canada, London, ON CANADA
| | - Dwayne D. Hegedus
- Saskatoon Research and Development Centre, Agriculture and Agri-Food Canada, Saskatoon, SK CANADA
- * E-mail: (MAE); (DDH)
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Javed MA, Coutu C, Theilmann DA, Erlandson MA, Hegedus DD. Proteomics analysis of Trichoplusia ni midgut epithelial cell brush border membrane vesicles. Insect Sci 2019; 26:424-440. [PMID: 29064633 PMCID: PMC7379565 DOI: 10.1111/1744-7917.12547] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/13/2017] [Revised: 09/11/2017] [Accepted: 09/29/2017] [Indexed: 06/07/2023]
Abstract
The insect midgut epithelium is composed of columnar, goblet, and regenerative cells. Columnar epithelial cells are the most abundant and have membrane protrusions that form the brush border membrane (BBM) on their apical side. These increase surface area available for the transport of nutrients, but also provide opportunities for interaction with xenobiotics such as pathogens, toxins and host plant allelochemicals. Recent improvements in proteomic and bioinformatics tools provided an opportunity to determine the proteome of the T. ni BBM in unprecedented detail. This study reports the identification of proteins from BBM vesicles (BBMVs) using single dimension polyacrylamide gel electrophoresis coupled with multi-dimensional protein identification technology. More than 3000 proteins were associated with the BBMV, of which 697 were predicted to possess either a signal peptide, at least one transmembrane domain or a GPI-anchor signal. Of these, bioinformatics analysis and manual curation predicted that 185 may be associated with the BBMV or epithelial cell plasma membrane. These are discussed with respect to their predicted functions, namely digestion, nutrient uptake, cell signaling, development, cell-cell interactions, and other functions. We believe this to be the most detailed proteomic analysis of the lepidopteran midgut epithelium membrane to date, which will provide information to better understand the biochemical, physiological and pathological processes taking place in the larval midgut.
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Affiliation(s)
- Muhammad Afzal Javed
- Saskatoon Research and Development CentreAgriculture and Agri‐Food CanadaSaskatoonSaskatchewanCanada
| | - Cathy Coutu
- Saskatoon Research and Development CentreAgriculture and Agri‐Food CanadaSaskatoonSaskatchewanCanada
| | - David A. Theilmann
- Summerland Research and Development CentreAgriculture and Agri‐Food CanadaSummerlandBritish ColumbiaCanada
| | - Martin A. Erlandson
- Saskatoon Research and Development CentreAgriculture and Agri‐Food CanadaSaskatoonSaskatchewanCanada
| | - Dwayne D. Hegedus
- Saskatoon Research and Development CentreAgriculture and Agri‐Food CanadaSaskatoonSaskatchewanCanada
- Department of Food & Bio‐Product SciencesUniversity of SaskatchewanSaskatoonSaskatchewanCanada
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21
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Heydarian Z, Yu M, Gruber M, Coutu C, Robinson SJ, Hegedus DD. Changes in gene expression in Camelina sativa roots and vegetative tissues in response to salinity stress. Sci Rep 2018; 8:9804. [PMID: 29955098 PMCID: PMC6023900 DOI: 10.1038/s41598-018-28204-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Accepted: 06/14/2018] [Indexed: 12/19/2022] Open
Abstract
The response of Camelina sativa to salt stress was examined. Salt reduced shoot, but not root length. Root and shoot weight were affected by salt, as was photosynthetic capacity. Salt did not alter micro-element concentration in shoots, but increased macro-element (Ca and Mg) levels. Gene expression patterns in shoots indicated that salt stress may have led to shuttling of Na+ from the cytoplasm to the tonoplast and to an increase in K+ and Ca+2 import into the cytoplasm. In roots, gene expression patterns indicated that Na+ was exported from the cytoplasm by the SOS pathway and that K+ was imported in response to salt. Genes involved in chelation and storage were up-regulated in shoots, while metal detoxification appeared to involve various export mechanisms in roots. In shoots, genes involved in secondary metabolism leading to lignin, anthocyanin and wax production were up-regulated. Partial genome partitioning was observed in roots and shoots based on the expression of homeologous genes from the three C. sativa sub-genomes. Sub-genome I and II were involved in the response to salinity stress to about the same degree, while about 10% more differentially-expressed genes were associated with sub-genome III.
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Affiliation(s)
- Zohreh Heydarian
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
- Department of Biotechnology, School of Agriculture, University of Shiraz, Bajgah, Shiraz, Fars, Iran
| | - Min Yu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Margaret Gruber
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Stephen J Robinson
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada.
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
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22
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Heydarian Z, Gruber M, Glick BR, Hegedus DD. Gene Expression Patterns in Roots of Camelina sativa With Enhanced Salinity Tolerance Arising From Inoculation of Soil With Plant Growth Promoting Bacteria Producing 1-Aminocyclopropane-1-Carboxylate Deaminase or Expression the Corresponding acdS Gene. Front Microbiol 2018; 9:1297. [PMID: 30013518 PMCID: PMC6036250 DOI: 10.3389/fmicb.2018.01297] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2017] [Accepted: 05/28/2018] [Indexed: 12/19/2022] Open
Abstract
Camelina sativa treated with plant growth-promoting bacteria (PGPB) producing 1-aminocyclopropane-1-carboxylate deaminase (acdS) or transgenic lines expressing acdS exhibit increased salinity tolerance. AcdS reduces the level of stress ethylene to below the point where it is inhibitory to plant growth. The study determined that several mechanisms appear to be responsible for the increased salinity tolerance and that the effect of acdS on gene expression patterns in C. sativa roots during salt stress is a function of how it is delivered. Growth in soil treated with the PGPB (Pseudomonas migulae 8R6) mostly affected ethylene- and abscisic acid-dependent signaling in a positive way, while expression of acdS in transgenic lines under the control of the broadly active CaMV 35S promoter or the root-specific rolD promoter affected auxin, jasmonic acid and brassinosteroid signaling and/biosynthesis. The expression of genes involved in minor carbohydrate metabolism were also up-regulated, mainly in roots of lines expressing acdS. Expression of acdS also affected the expression of genes involved in modulating the level of reactive oxygen species (ROS) to prevent cellular damage, while permitting ROS-dependent signal transduction. Though the root is not a photosynthetic tissue, acdS had a positive effect on the expression of genes involved in photosynthesis.
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Affiliation(s)
- Zohreh Heydarian
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada.,Department of Biotechnology, School of Agriculture, Shiraz University, Shiraz, Iran
| | | | - Bernard R Glick
- Department of Biology, University of Waterloo, Waterloo, ON, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada.,Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada
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23
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Bahar MH, Wist TJ, Bekkaoui DR, Hegedus DD, Olivier CY. Aster leafhopper survival and reproduction, and Aster yellows transmission under static and fluctuating temperatures, using ddPCR for phytoplasma quantification. Sci Rep 2018; 8:227. [PMID: 29321551 PMCID: PMC5762862 DOI: 10.1038/s41598-017-18437-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Accepted: 12/12/2017] [Indexed: 01/14/2023] Open
Abstract
Aster yellows (AY) is an important disease of Brassica crops and is caused by Candidatus Phytoplasma asteris and transmitted by the insect vector, Aster leafhopper (Macrosteles quadrilineatus). Phytoplasma-infected Aster leafhoppers were incubated at various constant and fluctuating temperatures ranging from 0 to 35 °C with the reproductive host plant barley (Hordium vulgare). At 0 °C, leafhopper adults survived for 18 days, but failed to reproduce, whereas at 35 °C insects died within 18 days, but successfully reproduced before dying. Temperature fluctuation increased thermal tolerance in leafhoppers at 25 °C and increased fecundity of leafhoppers at 5 and 20 °C. Leafhopper adults successfully infected and produced AY-symptoms in canola plants after incubating for 18 days at 0-20 °C on barley, indicating that AY-phytoplasma maintains its virulence in this temperature range. The presence and number of AY-phytoplasma in insects and plants were confirmed by droplet digital PCR (ddPCR) quantification. The number of phytoplasma in leafhoppers increased over time, but did not differ among temperatures. The temperatures associated with a typical crop growing season on the Canadian Prairies will not limit the spread of AY disease by their predominant insect vector. Also, ddPCR quantification is a useful tool for early detection and accurate quantification of phytoplasma in plants and insects.
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Affiliation(s)
- Md H Bahar
- Charlottetown Research and Development Centre, Agriculture and Agri-Food Canada, 440 University Avenue, Charlottetown, PE, C1A 4N6, Canada.
| | - Tyler J Wist
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Diana R Bekkaoui
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Dwayne D Hegedus
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
| | - Chrystel Y Olivier
- Saskatoon Research Centre, Agriculture and Agri-Food Canada, 7 Science Place, Saskatoon, Saskatchewan, S7N 0X2, Canada
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Seifbarghi S, Borhan MH, Wei Y, Coutu C, Robinson SJ, Hegedus DD. Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus. BMC Genomics 2017; 18:266. [PMID: 28356071 PMCID: PMC5372324 DOI: 10.1186/s12864-017-3642-5] [Citation(s) in RCA: 75] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Accepted: 03/18/2017] [Indexed: 11/17/2022] Open
Abstract
Background Sclerotinia sclerotiorum causes stem rot in Brassica napus, which leads to lodging and severe yield losses. Although recent studies have explored significant progress in the characterization of individual S. sclerotiorum pathogenicity factors, a gap exists in profiling gene expression throughout the course of S. sclerotiorum infection on a host plant. In this study, RNA-Seq analysis was performed with focus on the events occurring through the early (1 h) to the middle (48 h) stages of infection. Results Transcript analysis revealed the temporal pattern and amplitude of the deployment of genes associated with aspects of pathogenicity or virulence during the course of S. sclerotiorum infection on Brassica napus. These genes were categorized into eight functional groups: hydrolytic enzymes, secondary metabolites, detoxification, signaling, development, secreted effectors, oxalic acid and reactive oxygen species production. The induction patterns of nearly all of these genes agreed with their predicted functions. Principal component analysis delineated gene expression patterns that signified transitions between pathogenic phases, namely host penetration, ramification and necrotic stages, and provided evidence for the occurrence of a brief biotrophic phase soon after host penetration. Conclusions The current observations support the notion that S. sclerotiorum deploys an array of factors and complex strategies to facilitate host colonization and mitigate host defenses. This investigation provides a broad overview of the sequential expression of virulence/pathogenicity-associated genes during infection of B. napus by S. sclerotiorum and provides information for further characterization of genes involved in the S. sclerotiorum-host plant interactions. Electronic supplementary material The online version of this article (doi:10.1186/s12864-017-3642-5) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Shirin Seifbarghi
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada.,Department of Biology, University of Saskatchewan, Saskatoon, Canada
| | - M Hossein Borhan
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Yangdou Wei
- Department of Biology, University of Saskatchewan, Saskatoon, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Stephen J Robinson
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada. .,Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, Canada.
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25
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Heydarian Z, Yu M, Gruber M, Glick BR, Zhou R, Hegedus DD. Inoculation of Soil with Plant Growth Promoting Bacteria Producing 1-Aminocyclopropane-1-Carboxylate Deaminase or Expression of the Corresponding acdS Gene in Transgenic Plants Increases Salinity Tolerance in Camelina sativa. Front Microbiol 2016; 7:1966. [PMID: 28018305 PMCID: PMC5159422 DOI: 10.3389/fmicb.2016.01966] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Accepted: 11/24/2016] [Indexed: 01/07/2023] Open
Abstract
Camelina sativa (camelina) is an oilseed crop touted for use on marginal lands; however, it is no more tolerant of soil salinity than traditional crops, such as canola. Plant growth-promoting bacteria (PGPB) that produce 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) facilitate plant growth in the presence of abiotic stresses by reducing stress ethylene. Rhizospheric and endophytic PGPB and the corresponding acdS- mutants of the latter were examined for their ability to enhance tolerance to salt in camelina. Stimulation of growth and tolerance to salt was correlated with ACC deaminase production. Inoculation of soil with wild-type PGPB led to increased shoot length in the absence of salt, and increased seed production by approximately 30–50% under moderately saline conditions. The effect of ACC deaminase was further examined in transgenic camelina expressing a bacterial gene encoding ACC deaminase (acdS) under the regulation of the CaMV 35S promoter or the root-specific rolD promoter. Lines expressing acdS, in particular those using the rolD promoter, showed less decline in root length and weight, increased seed production, better seed quality and higher levels of seed oil production under salt stress. This study clearly demonstrates the potential benefit of using either PGPB that produce ACC deaminase or transgenic plants expressing the acdS gene under the control of a root-specific promoter to facilitate plant growth, seed production and seed quality on land that is not normally suitable for the majority of crops due to high salt content.
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Affiliation(s)
- Zohreh Heydarian
- Agriculture and Agri-Food Canada, SaskatoonSK, Canada; Department of Biotechnology, School of Agriculture, Shiraz UniversityShiraz, Iran
| | - Min Yu
- Agriculture and Agri-Food Canada, Saskatoon SK, Canada
| | | | - Bernard R Glick
- Department of Biology, University of Waterloo, Waterloo ON, Canada
| | - Rong Zhou
- Agriculture and Agri-Food Canada, Saskatoon SK, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, SaskatoonSK, Canada; Department of Food and Bioproduct Sciences, University of Saskatchewan, SaskatoonSK, Canada
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26
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Kagale S, Nixon J, Khedikar Y, Pasha A, Provart NJ, Clarke WE, Bollina V, Robinson SJ, Coutu C, Hegedus DD, Sharpe AG, Parkin IAP. The developmental transcriptome atlas of the biofuel crop Camelina sativa. Plant J 2016; 88:879-894. [PMID: 27513981 DOI: 10.1111/tpj.13302] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Revised: 08/01/2016] [Accepted: 08/04/2016] [Indexed: 05/17/2023]
Abstract
Camelina sativa is currently being embraced as a viable industrial bio-platform crop due to a number of desirable agronomic attributes and the unique fatty acid profile of the seed oil that has applications for food, feed and biofuel. The recent completion of the reference genome sequence of C. sativa identified a young hexaploid genome. To complement this work, we have generated a genome-wide developmental transcriptome map by RNA sequencing of 12 different tissues covering major developmental stages during the life cycle of C. sativa. We have generated a digital atlas of this comprehensive transcriptome resource that enables interactive visualization of expression data through a searchable database of electronic fluorescent pictographs (eFP browser). An analysis of this dataset supported expression of 88% of the annotated genes in C. sativa and provided a global overview of the complex architecture of temporal and spatial gene expression patterns active during development. Conventional differential gene expression analysis combined with weighted gene expression network analysis uncovered similarities as well as differences in gene expression patterns between different tissues and identified tissue-specific genes and network modules. A high-quality census of transcription factors, analysis of alternative splicing and tissue-specific genome dominance provided insight into the transcriptional dynamics and sub-genome interplay among the well-preserved triplicated repertoire of homeologous loci. The comprehensive transcriptome atlas in combination with the reference genome sequence provides a powerful resource for genomics research which can be leveraged to identify functional associations between genes and understand the regulatory networks underlying developmental processes.
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Affiliation(s)
- Sateesh Kagale
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
- National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK, Canada
| | - John Nixon
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
| | - Yogendra Khedikar
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
| | - Asher Pasha
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada
| | - Nicholas J Provart
- Department of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada
| | - Wayne E Clarke
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
| | - Venkatesh Bollina
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
| | - Stephen J Robinson
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
| | - Andrew G Sharpe
- National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK, Canada
| | - Isobel A P Parkin
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, Canada
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27
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Toprak U, Erlandson M, Baldwin D, Karcz S, Wan L, Coutu C, Gillott C, Hegedus DD. Identification of the Mamestra configurata (Lepidoptera: Noctuidae) peritrophic matrix proteins and enzymes involved in peritrophic matrix chitin metabolism. Insect Sci 2016; 23:656-674. [PMID: 25846407 DOI: 10.1111/1744-7917.12225] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 03/18/2015] [Indexed: 06/04/2023]
Abstract
The peritrophic matrix (PM) is essential for insect digestive system physiology as it protects the midgut epithelium from damage by food particles, pathogens, and toxins. The PM is also an attractive target for development of new pest control strategies due to its per os accessibility. To understand how the PM performs these functions, the molecular architecture of the PM was examined using genomic and proteomic approaches in Mamestra configurata (Lepidoptera: Noctuidae), a major pest of cruciferous oilseed crops in North America. Liquid chromatography-tandem mass spectrometry analyses of the PM identified 82 proteins classified as: (i) peritrophins, including a new class with a CBDIII domain; (ii) enzymes involved in chitin modification (chitin deacetylases), digestion (serine proteases, aminopeptidases, carboxypeptidases, lipases and α-amylase) or other reactions (β-1,3-glucanase, alkaline phosphatase, dsRNase, astacin, pantetheinase); (iii) a heterogenous group consisting of polycalin, REPATs, serpin, C-Type lectin and Lsti99/Lsti201 and 3 novel proteins without known orthologs. The genes encoding PM proteins were expressed predominantly in the midgut. cDNAs encoding chitin synthase-2 (McCHS-2), chitinase (McCHI), and β-N-acetylglucosaminidase (McNAG) enzymes, involved in PM chitin metabolism, were also identified. McCHS-2 expression was specific to the midgut indicating that it is responsible for chitin synthesis in the PM, the only chitinous material in the midgut. In contrast, the genes encoding the chitinolytic enzymes were expressed in multiple tissues. McCHS-2, McCHI, and McNAG were expressed in the midgut of feeding larvae, and NAG activity was present in the PM. This information was used to generate an updated model of the lepidopteran PM architecture.
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Affiliation(s)
- Umut Toprak
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
- Department of Plant Protection, Faculty of Agriculture, University of Ankara, Ankara, Turkey
| | - Martin Erlandson
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
| | - Doug Baldwin
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Steve Karcz
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Lianglu Wan
- Plant Biotechnology Institute, National Research Council of Canada, Saskatoon, SK, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Cedric Gillott
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada.
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada.
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28
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Donly BC, Kaplanoglu E, Theilmann DA, Baldwin D, Sieminska E, Hegedus DD, Erlandson MA. MacoNPV baculovirus midgut-specific gene expression during infection of the bertha armyworm, Mamestra configurata. Virology 2016; 499:1-8. [PMID: 27623563 DOI: 10.1016/j.virol.2016.09.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2016] [Revised: 09/02/2016] [Accepted: 09/03/2016] [Indexed: 12/01/2022]
Abstract
Baculoviruses have two forms, occlusion derived virus (ODV) which is responsible for primary infection in host midgut tissue and budded virus (BV), which infects all other host tissues during secondary infection. This study examined the primary infection by ODV of midgut cells of bertha armyworm Mamestra configurata fourth instar larvae and measured the expression of viral genes over a time course of infection. Both digital PCR and RNA sequencing methods showed the profile of transcription to be different from those produced by AcMNPV BV infection of in vitro cell cultures. This included having unique collections of genes expressed early, as well as much greater late gene expression of p6.9 and much reduced expression of polh and p10. These differences likely reflect characteristics unique to the critical step of in vivo midgut cell infection, and provide insights into the processes that regulate viral gene expression in different host tissues.
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Affiliation(s)
- B Cameron Donly
- London Research and Development Centre, AAFC, London, ON, Canada.
| | - Emine Kaplanoglu
- London Research and Development Centre, AAFC, London, ON, Canada
| | - David A Theilmann
- Summerland Research and Development Centre, AAFC, Summerland, BC, Canada
| | - Doug Baldwin
- Saskatoon Research and Development Centre, AAFC, Saskatoon, SK, Canada
| | - Edyta Sieminska
- Saskatoon Research and Development Centre, AAFC, Saskatoon, SK, Canada
| | - Dwayne D Hegedus
- Saskatoon Research and Development Centre, AAFC, Saskatoon, SK, Canada
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29
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Bashi ZD, Gyawali S, Bekkaoui D, Coutu C, Lee L, Poon J, Rimmer SR, Khachatourians GG, Hegedus DD. The Sclerotinia sclerotiorum Slt2 mitogen-activated protein kinase ortholog, SMK3, is required for infection initiation but not lesion expansion. Can J Microbiol 2016; 62:836-850. [PMID: 27503454 DOI: 10.1139/cjm-2016-0091] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Mitogen-activated protein kinases (MAPKs) play a central role in transferring signals and regulating gene expression in response to extracellular stimuli. An ortholog of the Saccharomyces cerevisiae cell wall integrity MAPK was identified in the phytopathogenic fungus Sclerotinia sclerotiorum. Disruption of the S. sclerotiorum Smk3 gene severely reduced virulence on intact host plant leaves but not on leaves stripped of cuticle wax. This was attributed to alterations in hyphal apical dominance leading to the inability to aggregate and form infection cushions. The mutation also caused loss of the ability to produce sclerotia, increased aerial hyphae formation, and altered hyphal hydrophobicity and cell wall integrity. Mutants had slower radial expansion rates on solid media but more tolerance to elevated temperatures. Loss of the SMK3 cell wall integrity MAPK appears to have impaired the ability of S. sclerotiorum to sense its surrounding environment, leading to misregulation of a variety of functions. Many of the phenotypes were similar to those observed in S. sclerotiorum adenylate cyclase and SMK1 MAPK mutants, suggesting that these signaling pathways co-regulate aspects of fungal growth, physiology, and pathogenicity.
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Affiliation(s)
- Zafer Dallal Bashi
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada.,b Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada
| | - Sanjaya Gyawali
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Diana Bekkaoui
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Cathy Coutu
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Leora Lee
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Jenny Poon
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - S Roger Rimmer
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - George G Khachatourians
- b Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada
| | - Dwayne D Hegedus
- a Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada.,b Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK S7N 5A8, Canada
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Gyawali S, Harrington M, Durkin J, Horner K, Parkin IAP, Hegedus DD, Bekkaoui D, Buchwaldt L. Microsatellite markers used for genome-wide association mapping of partial resistance to Sclerotinia sclerotiorum in a world collection of Brassica napus. Mol Breed 2016; 36:72. [PMID: 27330402 PMCID: PMC4889634 DOI: 10.1007/s11032-016-0496-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2015] [Accepted: 05/23/2016] [Indexed: 05/18/2023]
Abstract
The fungal pathogen Sclerotinia sclerotiorum causes stem rot of oilseed rape (Brassica napus) worldwide. In preparation for genome-wide association mapping (GWAM) of sclerotinia resistance in B. napus, 152 accessions from diverse geographical regions were screened with a single Canadian isolate, #321. Plants were inoculated by attaching mycelium plugs to the main stem at full flower. Lesion lengths measured 7, 14 and 21 days after inoculation were used to calculate the area under the disease progress curve (AUDPC). Depth of penetration was noted and used to calculate percent soft and collapsed lesions (% s + c). The two disease traits were highly correlated (r = 0.93). Partially resistant accessions (AUDPC <7 and % s + c <2) were identified primarily from South Korea and Japan with a few from Pakistan, China and Europe. Genotyping of accessions with 84 simple sequence repeat markers provided 690 polymorphic loci for GWAM. The general linear model in TASSEL best fitted the data when adjusted for population structure (STRUCTURE), GLM + Q. After correction for positive false discovery rate, 34 loci were significantly associated with both disease traits of which 21 alleles contributed to resistance, while the remaining enhanced susceptibility. The phenotypic variation explained by the loci ranged from 6 to 25 %. Five loci mapped to published quantitative trait loci conferring sclerotinia resistance in Chinese lines.
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Affiliation(s)
- Sanjaya Gyawali
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
- />International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, Morocco
| | - Myrtle Harrington
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
| | - Jonathan Durkin
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
| | - Kyla Horner
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
| | - Isobel A. P. Parkin
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
| | - Dwayne D. Hegedus
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
| | - Diana Bekkaoui
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
| | - Lone Buchwaldt
- />Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N0X2 Canada
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Hegedus DD, Gerbrandt K, Coutu C. The eukaryotic protein kinase superfamily of the necrotrophic fungal plant pathogen, Sclerotinia sclerotiorum. Mol Plant Pathol 2016; 17:634-647. [PMID: 26395470 PMCID: PMC6638376 DOI: 10.1111/mpp.12321] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Protein kinases have been implicated in the regulation of many processes that guide pathogen development throughout the course of infection. A survey of the Sclerotinia sclerotiorum genome for genes encoding proteins containing the highly conserved eukaryotic protein kinase (ePK) domain, the largest protein kinase superfamily, revealed 92 S. sclerotiorum ePKs. This review examines the composition of the S. sclerotiorum ePKs based on conserved motifs within the ePK domain family, and relates this to orthologues found in other filamentous fungi and yeasts. The ePKs are also discussed in terms of their proposed role(s) in aspects of host pathogenesis, including the coordination of mycelial growth/development and deployment of pathogenicity determinants in response to environmental stimuli, nutrients and stress.
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Affiliation(s)
- Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada, S7N 0X2
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada, S7N 5A9
| | - Kelsey Gerbrandt
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada, S7N 0X2
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada, S7N 0X2
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Abstract
Proteomics approaches have been a useful tool for determining the biological roles and functions of individual proteins and identifying the molecular mechanisms that govern seed germination, vigour and viability in response to ageing. In this work the dry seed proteome of four Arabidopsis thaliana genotypes, that carry introgression fragments at the position of seed longevity quantitative trait loci and as a result display different levels of seed longevity, was investigated. Seeds at two physiological states, after-ripened seeds that had the full germination ability and aged (stored) seeds of which the germination ability was severely reduced, were compared. Aged dry seed proteomes were markedly different from the after-ripened and reflected the seed longevity level of the four genotypes, despite the fact that dry seeds are metabolically quiescent. Results confirmed the role of antioxidant systems, notably vitamin E, and indicated that protection and maintenance of the translation machinery and energy pathways are essential for seed longevity. Moreover, a new role for seed storage proteins (SSPs) was identified in dry seeds during ageing. Cruciferins (CRUs) are the most abundant SSPs in Arabidopsis and seeds of a triple mutant for three CRU isoforms (crua crub cruc) were more sensitive to artificial ageing and their seed proteins were highly oxidized compared with wild-type seeds. These results confirm that oxidation is involved in seed deterioration and that SSPs buffer the seed from oxidative stress, thus protecting important proteins required for seed germination and seedling formation.
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Affiliation(s)
- Thu-Phuong Nguyen
- Wageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands Department of Molecular Plant Physiology, Utrecht University, 3584 CH Utrecht, The Netherlands
| | - Gwendal Cueff
- INRA, Institut Jean-Pierre Bourgin, UMR 1318 INRA-AgroParisTech, ERL CNRS 3559, Laboratory of Excellence 'Saclay Plant Sciences' (LabEx SPS), RD10, F-78026 Versailles Cedex, France AgroParisTech, Chair of Plant Physiology, 16 rue Claude Bernard, F-75231 Paris Cedex 05, France
| | - Dwayne D Hegedus
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon S7N5A9, Canada Agriculture and Agri-Food Canada, Saskatoon, Saskatchewan S7N 0X2, Canada
| | - Loïc Rajjou
- INRA, Institut Jean-Pierre Bourgin, UMR 1318 INRA-AgroParisTech, ERL CNRS 3559, Laboratory of Excellence 'Saclay Plant Sciences' (LabEx SPS), RD10, F-78026 Versailles Cedex, France AgroParisTech, Chair of Plant Physiology, 16 rue Claude Bernard, F-75231 Paris Cedex 05, France
| | - Leónie Bentsink
- Wageningen Seed Lab, Laboratory of Plant Physiology, Wageningen University, 6708 PB Wageningen, The Netherlands Department of Molecular Plant Physiology, Utrecht University, 3584 CH Utrecht, The Netherlands
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Gao MJ, Li X, Huang J, Gropp GM, Gjetvaj B, Lindsay DL, Wei S, Coutu C, Chen Z, Wan XC, Hannoufa A, Lydiate DJ, Gruber MY, Chen ZJ, Hegedus DD. SCARECROW-LIKE15 interacts with HISTONE DEACETYLASE19 and is essential for repressing the seed maturation programme. Nat Commun 2015; 6:7243. [PMID: 26129778 PMCID: PMC4507008 DOI: 10.1038/ncomms8243] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2014] [Accepted: 04/22/2015] [Indexed: 01/20/2023] Open
Abstract
Epigenetic regulation of gene expression is critical for controlling embryonic properties during the embryo-to-seedling phase transition. Here we report that a histone deacetylase19 (HDA19)-associated regulator, scarecrow-like15 (SCL15), is essential for repressing the seed maturation programme in vegetative tissues. SCL15 is expressed in and GFP-tagged SCL15 predominantly localizes to, the vascular bundles particularly in the phloem companion cells and neighbouring specialized cells. Mutation of SCL15 leads to a global shift in gene expression in seedlings to a profile resembling late embryogenesis in seeds. In scl15 seedlings, many genes involved in seed maturation are markedly derepressed with concomitant accumulation of seed 12S globulin; this is correlated with elevated levels of histone acetylation at a subset of seed-specific loci. SCL15 physically interacts with HDA19 and direct targets of HDA19-SCL15 association are identified. These studies reveal that SCL15 acts as an HDA19-associated regulator to repress embryonic traits in seedlings.
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Affiliation(s)
- Ming-Jun Gao
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Xiang Li
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Jun Huang
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Gordon M Gropp
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Branimir Gjetvaj
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Donna L Lindsay
- Department of Anatomy and Cell Biology, University of Saskatchewan, Saskatoon, SK, Canada S7N 5E5
| | - Shu Wei
- Key Laboratory of Tea Biochemistry and Biotechnology, Anhui Agricultural University, Hefei, Anhui 230036, China
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Zhixiang Chen
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA
| | - Xiao-Chun Wan
- Key Laboratory of Tea Biochemistry and Biotechnology, Anhui Agricultural University, Hefei, Anhui 230036, China
| | - Abdelali Hannoufa
- Agriculture and Agri-Food Canada, 1391 Sandford Street, London, ON, Canada N5V 4T3
| | - Derek J Lydiate
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Margaret Y Gruber
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
| | - Z Jeffrey Chen
- Institute for Cellular and Molecular Biology, Center for Computational Biology and Bioinformatics, University of Texas at Austin, Austin, Texas 78712, USA
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, SK, Canada S7N 0X2
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Hegedus DD, Coutu C, Harrington M, Hope B, Gerbrandt K, Nikolov I. Multiple internal sorting determinants can contribute to the trafficking of cruciferin to protein storage vacuoles. Plant Mol Biol 2015; 88:3-20. [PMID: 25702284 DOI: 10.1007/s11103-015-0297-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2014] [Accepted: 02/13/2015] [Indexed: 06/04/2023]
Abstract
Trafficking of seed storage proteins to protein storage vacuoles is mediated by carboxy terminal and internal sorting determinants (ISDs). Protein modelling was used to identify candidate ISDs residing near surface-exposed regions in Arabidopsis thaliana cruciferin A (AtCruA). These were verified by AtCruA fusion to yellow fluorescent protein (YFP) and expression in developing embryos of A. thaliana. As the presence of endogenous cruciferin was found to mask the effects of weaker ISDs, experiments were conducted in a line that was devoid of cruciferin. In total, nine ISDs were discovered and a core determinant defined using a series of alanine scanning and deletion mutant variants. Coupling of functional data from AtCruA ISD-YFP fusions with statistical analysis of the physiochemical properties of analogous regions from several 11/12S globulins revealed that cruciferin ISDs likely adhere to the following rules: (1) ISDs are adjacent to or within hydrophilic, surface-exposed regions that serve to present them on the protein's surface; (2) ISDs generally have a hydrophobic character; (3) ISDs tend to have Leu or Ile residues at their core; (4) ISDs are approximately eight amino acids long with the physiochemical consensus [hydrophobic][preferably charged][small or hydrophobic, but not tiny][IL][polar, preferably charged][small, but not charged][hydrophobic, not charged, preferably not polar][hydrophobic, not tiny, preferably not polar]. Microscopic evidence is also presented for the presence of an interconnected protein storage vacuolar network in embryo cells, rather than discreet, individual vacuoles.
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Affiliation(s)
- Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada,
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Toprak U, Hegedus DD, Baldwin D, Coutu C, Erlandson M. Spatial and temporal synthesis of Mamestra configurata peritrophic matrix through a larval stadium. Insect Biochem Mol Biol 2014; 54:89-97. [PMID: 25240619 DOI: 10.1016/j.ibmb.2014.09.002] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Revised: 08/26/2014] [Accepted: 09/03/2014] [Indexed: 06/03/2023]
Abstract
The structure and synthesis of the Mamestra configurata peritrophic matrix (PM) was examined at various time points during a larval stadium. Bright field and confocal fluorescence microscopy revealed major differences between the PM of feeding and molting larvae. The PM from feeding larvae was thinner and composed of approximately 5-10 layers. In contrast, mid-molt larvae had a chitinaceaous PM composed of multiple thick layers which filled most of the midgut lumen. PM synthesis initiates in the anterior midgut, based on the expression of genes encoding chitin synthase-2 (CHS-2), coincident with the incorporation of the major structural PM proteins (McIIM1, McIIM2 and McPM1). This is followed by reinforcement with other PM proteins (McIIM3 and McIIM4) as it moves toward the posterior of the midgut. Chitin deacetylase (McCDA1) was associated only with the anterior PM. Collectively, these findings indicate that the structural properties of the PM differ along the length of the midgut. Genes encoding chitinolytic enzymes (McCHI and McNAG) were expressed and exochitinase activity was present when the PM had degraded (pre-molt) and when the new PM was forming (mid-molt), indicating that they are involved in either PM turnover and/or maintenance dependent upon the stage.
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Affiliation(s)
- Umut Toprak
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada; Department of Plant Protection, College of Agriculture, University of Ankara, Ankara, Turkey
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada; Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada
| | - Doug Baldwin
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Martin Erlandson
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada; Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada.
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Toprak U, Guz N, Gurkan MO, Hegedus DD. Identification and coordinated expression of perilipin genes in the biological cycle of sunn pest, Eurygaster maura (Hemiptera: Scutelleridae): Implications for lipolysis and lipogenesis. Comp Biochem Physiol B Biochem Mol Biol 2014; 171:1-11. [DOI: 10.1016/j.cbpb.2014.02.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2013] [Revised: 01/30/2014] [Accepted: 02/05/2014] [Indexed: 01/10/2023]
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Hegedus DD, Baron M, Labbe N, Coutu C, Lydiate D, Lui H, Rozwadowski K. A strategy for targeting recombinant proteins to protein storage vacuoles by fusion to Brassica napus napin in napin-depleted seeds. Protein Expr Purif 2014; 95:162-8. [PMID: 24394588 DOI: 10.1016/j.pep.2013.12.009] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2013] [Revised: 12/16/2013] [Accepted: 12/18/2013] [Indexed: 12/29/2022]
Abstract
Seeds are capable of accumulating high levels of seed storage proteins (SSP), as well as heterologous proteins under certain conditions. Arabidopsis thaliana was used to develop a strategy to deplete seeds of an endogenous SSP and then replenish them with the same protein fused to a heterologous protein. In several other studies, competition with endogenous SSP for space and metabolic resources was shown to affect the accumulation of recombinant proteins in seeds. We used RNAi to reduce the expression of the five napin genes and deplete the seeds of this SSP. Targeting a recombinant protein to a vacuole or structure within the seed where it can be protected from cytosolic proteases can also promote its accumulation. To achieve this, a synthetic Brassica napus napin gene (Bn napin) was designed that was both impervious to the A. thaliana napin (At napin) RNAi construct and permitted fusion to a heterologous protein, in this case green fluorescent protein (GFP). GFP was placed in several strategic locations within Bn napin with consideration to maintaining structure, processing sites and possible vacuolar targeting signals. In transgenic A. thaliana plants, GFP was strongly localized to the seed protein storage vacuole in all Bn napin fusion configurations tested, but not when expressed alone. This SSP depletion-replenishment strategy outlined here would be applicable to expression of recombinant proteins in industrial crops that generally have large repertoires of endogenous SSP genes.
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Affiliation(s)
- Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada.
| | - Marcus Baron
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Natalie Labbe
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Cathy Coutu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Derek Lydiate
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Helen Lui
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
| | - Kevin Rozwadowski
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N OX2, Canada
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Withana-Gamage TS, Hegedus DD, Qiu X, McIntosh T, Wanasundara JPD. Structural and physicochemical property relationships of cruciferin homohexamers. J Agric Food Chem 2013; 61:5848-5859. [PMID: 23738812 DOI: 10.1021/jf400559x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Heteromeric cruciferin from wild type (WT) Arabidopsis thaliana and homomeric cruciferin CRUA, CRUB, and CRUC composed of identical subunits obtained from double-knockout mutant lines were investigated for their structural and physicochemical properties. A three-step chromatographic procedure allowed isolation of intact cruciferin hexamers with high purity (>95%). FT-IR and CD analysis of protein secondary structure composition revealed that all cruciferins were folded into higher order structures consisting of 44-50% β-sheets and 7-9% α-helices. The structural and physicochemical properties of homohexameric CRUC deviated from that of CRUA and CRUB and exhibited a compact, thermostable, and less hydrophobic structure, confirming the predictions made using 3D homology structure models.
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Bashi ZD, Rimmer SR, Khachatourians GG, Hegedus DD. Brassica napus polygalacturonase inhibitor proteins inhibit Sclerotinia sclerotiorum polygalacturonase enzymatic and necrotizing activities and delay symptoms in transgenic plants. Can J Microbiol 2013; 59:79-86. [PMID: 23461514 DOI: 10.1139/cjm-2012-2352] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Sclerotinia sclerotiorum releases a battery of polygalacturonases (PGs) during infection, which the host plant may cope with through production of polygalacturonase inhibitor proteins (PGIPs). To study the interaction between S. sclerotiorum PGs and Brassica napus PGIPs, 5 S. sclerotiorum PGs and 4 B. napus PGIPs were expressed in Pichia pastoris. SsPG3, SsPG6, and BnPGIP1 were successfully produced in the yeast system, and BnPGIP1 inhibited SsPG6 enzymatic activity in vitro. SsPG3 and SsPG6 both induced light-dependent necrosis when infiltrated into leaves, which was reduced in an Arabidopsis thaliana line expressing BnPGIP2 and to a lesser extent in a line expressing BnPGIP1. The line expressing BnPGIP2 also exhibited a delay in the onset of symptoms upon S. sclerotiorum inoculation, but no long-term effect on S. sclerotiorum disease progression was observed. The P. pastoris system was found to be suitable for expressing high levels of some S. sclerotiorum PGs, but PGIP interaction studies were best performed in planta. Arabidopsis thaliana forms necrotic lesions upon infiltration of PGs, is susceptible to S. sclerotiorum, and is easily transformed, and thus, is well-suited for the qualitative study of PG-PGIP interactions.
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Affiliation(s)
- Zafer Dallal Bashi
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2, Canada
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Toprak U, Baldwin D, Erlandson M, Gillott C, Harris S, Hegedus DD. In vitro and in vivo application of RNA interference for targeting genes involved in peritrophic matrix synthesis in a lepidopteran system. Insect Sci 2013; 20:92-100. [PMID: 23955829 DOI: 10.1111/j.1744-7917.2012.01562.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The midgut of most insects is lined with a semipermeable acellular tube, the peritrophic matrix (PM), composed of chitin and proteins. Although various genes encoding PM proteins have been characterized, our understanding of their roles in PM structure and function is very limited. One promising approach for obtaining functional information is RNA interference, which has been used to reduce the levels of specific mRNAs using double-stranded RNAs administered to larvae by either injection or feeding. Although this method is well documented in dipterans and coleopterans, reports of its success in lepidopterans are varied. In the current study, the silencing midgut genes encoding PM proteins (insect intestinal mucin 1, insect intestinal mucin 4, PM protein 1) and the chitin biosynthetic or modifying enzymes (chitin synthase-B and chitin deacetylase 1) in a noctuid lepidopteran, Mamestra configurata, was examined in vitro and in vivo. In vitro studies in primary midgut epithelial cell preparations revealed an acute and rapid silencing (by 24 h) for the gene encoding chitin deacetylase 1 and a slower rate of silencing (by 72 h) for the gene encoding PM protein 1. Genes encoding insect intestinal mucins were slightly silenced by 72 h, whereas no silencing was detected for the gene encoding chitin synthase-B. In vivo experiments focused on chitin deacetylase 1, as the gene was silenced to the greatest extent in vitro. Continuous feeding of neonates and fourth instar larvae with double-stranded RNA resulted in silencing of chitin deacetylase 1 by 24 and 36 h, respectively. Feeding a single dose to neonates also resulted in silencing by 24 h. The current study demonstrates that genes encoding PM proteins can be silenced and outlines conditions for RNA interference by per os feeding in lepidopterans.
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Affiliation(s)
- Umut Toprak
- Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada
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Withana-Gamage TS, Hegedus DD, Qiu X, Yu P, May T, Lydiate D, Wanasundara JPD. Characterization of Arabidopsis thaliana lines with altered seed storage protein profiles using synchrotron-powered FT-IR spectromicroscopy. J Agric Food Chem 2013; 61:901-12. [PMID: 23298281 DOI: 10.1021/jf304328n] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Arabidopsis thaliana lines expressing only one cruciferin subunit type (double-knockout; CRUAbc, CRUaBc, or CRUabC) or devoid of cruciferin (triple-knockout; CRU-) or napin (napin-RNAi) were generated using combined T-DNA insertions or RNA interference approaches. Seeds of double-knockout lines accumulated homohexameric cruciferin and contained similar protein levels as the wild type (WT). Chemical imaging of WT and double-knockout seeds using synchrotron FT-IR spectromicroscopy (amide I band, 1650 cm(-1), νC═O) showed that proteins were concentrated in the cell center and protein storage vacuoles. Protein secondary structure features of the homohexameric cruciferin lines showed predominant β-sheet content. The napin-RNAi line had lower α-helix content than the WT. Lines entirely devoid of cruciferin had high α-helix and low β-sheet levels, indicating that structurally different proteins compensate for the loss of cruciferin. Lines producing homohexameric CRUC showed minimal changes in protein secondary structure after pepsin treatment, indicating low enzyme accessibility. The Synchrotron FT-IR technique provides information on protein secondary structure and changes to the structure within the cell.
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Bashi ZD, Rimmer SR, Khachatourians GG, Hegedus DD. Brassica napus polygalacturonase inhibitor proteins inhibit Sclerotinia sclerotiorum polygalacturonase enzymatic and necrotizing activities and delay symptoms in transgenic plants. Can J Microbiol 2012; 59:79-86. [PMID: 23461514 DOI: 10.1139/cjm-2012-0352] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Sclerotinia sclerotiorum releases a battery of polygalacturonases (PGs) during infection, which the host plant may cope with through production of polygalacturonase inhibitor proteins (PGIPs). To study the interaction between S. sclerotiorum PGs and Brassica napus PGIPs, 5 S. sclerotiorum PGs and 4 B. napus PGIPs were expressed in Pichia pastoris. SsPG3, SsPG6, and BnPGIP1 were successfully produced in the yeast system, and BnPGIP1 inhibited SsPG6 enzymatic activity in vitro. SsPG3 and SsPG6 both induced light-dependent necrosis when infiltrated into leaves, which was reduced in an Arabidopsis thaliana line expressing BnPGIP2 and to a lesser extent in a line expressing BnPGIP1. The line expressing BnPGIP2 also exhibited a delay in the onset of symptoms upon S. sclerotiorum inoculation, but no long-term effect on S. sclerotiorum disease progression was observed. The P. pastoris system was found to be suitable for expressing high levels of some S. sclerotiorum PGs, but PGIP interaction studies were best performed in planta. Arabidopsis thaliana forms necrotic lesions upon infiltration of PGs, is susceptible to S. sclerotiorum, and is easily transformed, and thus, is well-suited for the qualitative study of PG-PGIP interactions.
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Affiliation(s)
- Zafer Dallal Bashi
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK S7N 0X2, Canada
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Wei S, Gruber MY, Yu B, Gao MJ, Khachatourians GG, Hegedus DD, Parkin IAP, Hannoufa A. Arabidopsis mutant sk156 reveals complex regulation of SPL15 in a miR156-controlled gene network. BMC Plant Biol 2012; 12:169. [PMID: 22989211 PMCID: PMC3520712 DOI: 10.1186/1471-2229-12-169] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2012] [Accepted: 07/30/2012] [Indexed: 05/02/2023]
Abstract
BACKGROUND The Arabidopsis microRNA156 (miR156) regulates 11 members of the SQUAMOSA PROMOTER BINDING PROTEIN LIKE (SPL) family by base pairing to complementary target mRNAs. Each SPL gene further regulates a set of other genes; thus, miR156 controls numerous genes through a complex gene regulation network. Increased axillary branching occurs in transgenic Arabidopsis overexpressing miR156b, similar to that observed in loss-of-function max3 and max4 mutants with lesions in carotenoid cleavage dioxygenases. Arabidopsis miR156b was found to enhance carotenoid levels and reproductive shoot branching when expressed in Brassica napus, suggesting a link between miR156b expression and carotenoid metabolism. However, details of the miR156 regulatory network of SPL genes related to carotenoid metabolism are not known. RESULTS In this study, an Arabidopsis T-DNA enhancer mutant, sk156, was identified due to its altered branching and trichome morphology and increased seed carotenoid levels compared to wild type (WT) ecovar Columbia. Enhanced miR156b expression due to the 35S enhancers present on the T-DNA insert was responsible for these phenotypes. Constitutive and leaf primodium-specific expression of a miR156-insensitive (mutated) SPL15 (SPL15m) largely restored WT seed carotenoid levels and plant morphology when expressed in sk156. The Arabidopsis native miR156-sensitive SPL15 (SPL15n) and SPL15m driven by a native SPL15 promoter did not restore the WT phenotype in sk156. Our findings suggest that SPL15 function is somewhat redundant with other SPL family members, which collectively affect plant phenotypes. Moreover, substantially decreased miR156b transcript levels in sk156 expressing SPL15m, together with the presence of multiple repeats of SPL-binding GTAC core sequence close to the miR156b transcription start site, suggested feedback regulation of miR156b expression by SPL15. This was supported by the demonstration of specific in vitro interaction between DNA-binding SBP domain of SPL15 and the proximal promoter sequence of miR156b. CONCLUSIONS Enhanced miR156b expression in sk156 leads to the mutant phenotype including carotenoid levels in the seed through suppression of SPL15 and other SPL target genes. Moreover, SPL15 has a regulatory role not only for downstream components, but also for its own upstream regulator miR156b.
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Affiliation(s)
- Shu Wei
- College of Tea & Food Science and Technology, Anhui Agricultural University, 130 Changjiang Blvd West, Hefei, 230036, China
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Margaret Y Gruber
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Bianyun Yu
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
- Current address: Plant Biotechnology Institute, National Research Council of Canada, 110 Gymnasium Place, Saskatoon, SK, S7N 0W9, Canada
| | - Ming-Jun Gao
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - George G Khachatourians
- Department of Food and Bioproduct Sciences, University of Saskatchewan, 51 Campus Drive, Saskatoon, SK, S7N 5A8, Canada
| | - Dwayne D Hegedus
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Isobel AP Parkin
- Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Abdelali Hannoufa
- Agriculture and Agri-Food Canada, 1391 Sandford Street, London, ON, N5V 5T3, Canada
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Yu B, Gruber MY, Khachatourians GG, Zhou R, Epp DJ, Hegedus DD, Parkin IAP, Welsch R, Hannoufa A. Arabidopsis cpSRP54 regulates carotenoid accumulation in Arabidopsis and Brassica napus. J Exp Bot 2012; 63:5189-202. [PMID: 22791829 PMCID: PMC3430994 DOI: 10.1093/jxb/ers179] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
An Arabidopsis thaliana mutant, cbd (carotenoid biosynthesis deficient), was recovered from a mutant population based on its yellow cotyledons, yellow-first true leaves, and stunted growth. Seven-day-old seedlings and mature seeds of this mutant had lower chlorophyll and total carotenoids than the wild type (WT). Genetic and molecular characterization revealed that cbd was a recessive mutant caused by a T-DNA insertion in the gene cpSRP54 encoding the 54 kDa subunit of the chloroplast signal recognition particle. Transcript levels of most of the main carotenoid biosynthetic genes in cbd were unchanged relative to WT, but expression increased in carotenoid and abscisic acid catabolic genes. The chloroplasts of cbd also had developmental defects that contributed to decreased carotenoid and chlorophyll contents. Transcription of AtGLK1 (Golden 2-like 1), AtGLK2, and GUN4 appeared to be disrupted in the cbd mutant suggesting that the plastid-to-nucleus retrograde signal may be affected, regulating the changes in chloroplast functional and developmental states and carotenoid content flux. Transformation of A. thaliana and Brassica napus with a gDNA encoding the Arabidopsis cpSRP54 showed the utility of this gene in enhancing levels of seed carotenoids without affecting growth or seed yield.
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Affiliation(s)
- Bianyun Yu
- Agriculture and Agri-Food Canada107 Science Place, Saskatoon, SK, S7N 0X2, Canada
- Department of Food and Bioproduct Sciences, University of Saskatchewan51 Campus Drive, Saskatoon, SK, S7N 5A8, Canada
| | - Margaret Y. Gruber
- Agriculture and Agri-Food Canada107 Science Place, Saskatoon, SK, S7N 0X2, Canada
- To whom correspondence should be addressed: E-mail:
and
| | - George G. Khachatourians
- Department of Food and Bioproduct Sciences, University of Saskatchewan51 Campus Drive, Saskatoon, SK, S7N 5A8, Canada
| | - Rong Zhou
- Agriculture and Agri-Food Canada107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Delwin J. Epp
- Agriculture and Agri-Food Canada107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Dwayne D. Hegedus
- Agriculture and Agri-Food Canada107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Isobel A. P. Parkin
- Agriculture and Agri-Food Canada107 Science Place, Saskatoon, SK, S7N 0X2, Canada
| | - Ralf Welsch
- Institute for Biology II, Cell BiologySchaenzlestr. 1, 79104 Freiburg, Germany
| | - Abdelali Hannoufa
- Agriculture and Agri-Food Canada1391 Sandford Street, London, ON, N5V 4T3, Canada
- To whom correspondence should be addressed: E-mail:
and
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Dallal Bashi Z, Rimmer SR, Khachatourians GG, Hegedus DD. Factors governing the regulation of Sclerotinia sclerotiorum cutinase A and polygalacturonase 1 during different stages of infection. Can J Microbiol 2012; 58:605-16. [PMID: 22524557 DOI: 10.1139/w2012-031] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Sclerotinia sclerotiorum releases hydrolytic enzymes that sequentially degrade the plant cuticle, middle lamellae, and primary and secondary cell walls. The cuticle was found to be a barrier to S. sclerotiorum infection, as leaves stripped of epicuticular wax were more rapidly colonized. Consequently, the factors affecting the regulation of genes encoding polygalacturonase 1 (SsPG1) and a newly identified cutinase (SsCUTA) were examined. In vitro, SsCutA transcripts were detected within 1 h postinoculation of leaves, and expression was primarily governed by contact of mycelia with solid surfaces. Expression of SsPg1 was moderately induced by contact with solid surfaces including the leaf, and expression was restricted to the expanding margin of the lesion as the infection progressed. SsPg1 expression was induced by carbohydrate starvation but repressed by galacturonic acid. Glucose supported a basal level of SsPg1 expression but accentuated expression when provided to mycelia used to inoculate leaves. These observations were contrary to earlier reports indicating that glucose repressed SsPg1 expression while galacturonic acid induced expression. Pharmacological studies showed that disruption of calcium signalling affected SsCutA and SsPg1 expression and decreased S. sclerotiorum virulence, whereas elevated cAMP levels reduced virulence without affecting gene expression. The mechanisms involved in coordinating the expression of S. sclerotiorum hydrolytic enzymes throughout the various stages of the infection are discussed.
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Affiliation(s)
- Zafer Dallal Bashi
- Agriculture and Agri-Food Canada, 107 Science Place Saskatoon, SK S7N 0X2, Canada
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Toprak U, Harris S, Baldwin D, Theilmann D, Gillott C, Hegedus DD, Erlandson MA. Role of enhancin in Mamestra configurata nucleopolyhedrovirus virulence: selective degradation of host peritrophic matrix proteins. J Gen Virol 2012; 93:744-753. [DOI: 10.1099/vir.0.038117-0] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
To infect per os, baculovirus virions cross the peritrophic matrix (PM) to reach the midgut epithelium. Insect intestinal mucins (IIMs) are PM proteins that protect the PM and aid passage of the food bolus through the gut. Some baculoviruses, including Mamestra configurata nucleopolyhedrovirus (MacoNPV-A), encode metalloproteases, known as enhancins, that facilitate infection by degrading IIMs. We examined the interaction between MacoNPV-A enhancin and M. configurata IIMs both in vivo and in vitro. Per os inoculation of M. configurata larvae with MacoNPV-A occlusion bodies (OBs) resulted in the degradation of McIIM4 within 4 h of OB ingestion, while McIIM2 was unaffected. The PM recovered by 8 h post-inoculation. To investigate whether enhancin was responsible for the degradation of IIM, a recombinant Autographa californica multiple nucleopolyhedrovirus expressing MacoNPV enhancin (AcMNPV-enMP2) was constructed. Enhancin was found to be a component of occlusion-derived virions in AcMNPV-enMP2 and MacoNPV-A. In in vitro assays, McIIM4 was degraded after MacoNPV-A and AcMNPV-enMP2 treatments. Degradation of McIIM4 was inhibited by EDTA, a metalloprotease inhibitor, indicating that the degradation was due to enhancin activity. Thus, MacoNPV-A enhancin is able to degrade major structural PM proteins, but exhibits target substrate specificity.
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Affiliation(s)
- Umut Toprak
- Department of Plant Protection, College of Agriculture, University of Ankara, Ankara, Turkey
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | | | | | | | - Cedric Gillott
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
| | - Dwayne D. Hegedus
- Department of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, SK, Canada
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
| | - Martin A. Erlandson
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
- Agriculture and Agri-Food Canada, Saskatoon, SK, Canada
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Abstract
Cruciferin is the major storage protein in Brassicaceae family oilseeds. The predominant cruciferin isoforms in Arabidopsis thaliana were investigated using homology modeling (HM) for their molecular structures and functional properties. The structure of Brassica napus procruciferin was used as the template for HM to determine the molecular structures and hypervariable regions. Hydrophobicity and electrostatic surface potential distribution on the intradisulfide-containing face (IA) and the interdisulfide-containing face (IE) indicated favorable interfacial and solubility properties. More heat-induced structural changes were predicted for the CruC homotrimer than for the CruA or CruB homotrimers. Structural features that facilitate flavor binding and limit proteolytic digestion were more readily observed in CruA and CruB than in CruC. On the basis of these comparative models, structural differences among cruciferin isoforms and their relevance to potential technofunctionalities were identified. This approach of functional property prediction will link protein structure to utilities and will be valuable in designing proteins for targeted applications.
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Gao MJ, Li X, Lui H, Gropp GM, Lydiate DD, Wei S, Hegedus DD. ASIL1 is required for proper timing of seed filling in Arabidopsis. Plant Signal Behav 2011; 6:1886-1888. [PMID: 22231199 PMCID: PMC3337171 DOI: 10.4161/psb.6.12.18709] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
In flowering plants, seed development and seed filling are intricate genetically programmed processes that correlate with changes in metabolite levels and that are spatially and temporally regulated by a complex signaling network mediated mainly by sugars and hormones. ASIL1, a member of the plant-specific trihelix family of DNA-binding transcription factors, was isolated based on its interaction with the GT-element of the Arabidopsis thaliana 2S albumin At2S3 promoter. Mutation of ASIL1 derepressed expression of a subset of embryonic genes resulting in accumulation of 2S albumin and embryo-specific lipids in leaves. It was recently reported that mutation of ASIL1 led to early embryo development in Arabidopsis. In this study, we demonstrated that ASIL1 acts as a temporal regulator of seed filling. In developing siliques, mutation of ASIL1 led to earlier expression of master regulatory genes LEC2, FUS3 and ABI3 as well as genes for seed storage reserves. Moreover, the 12S globulin accumulated to a much higher level in the developing seeds of asil1-1 compared to wild type. To our knowledge, this is the first evidence that ASIL1 not only functions as a negative regulator of embryonic traits in seedlings but also contributes to the maintenance of precise temporal control of seed filling. Thus, ASIL1 represents a novel component of the regulatory framework controlling embryonic gene expression in Arabidopsis.
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Affiliation(s)
- Ming-Jun Gao
- Agriculture and Agri-Food Canada, Saskatoon Research Centre, Saskatoon, SK Canada.
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Li X, Gruber MY, Hegedus DD, Lydiate DJ, Gao MJ. Effects of a coumarin derivative, 4-methylumbelliferone, on seed germination and seedling establishment in Arabidopsis. J Chem Ecol 2011; 37:880-90. [PMID: 21713565 DOI: 10.1007/s10886-011-9987-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2011] [Revised: 06/08/2011] [Accepted: 06/10/2011] [Indexed: 12/23/2022]
Abstract
The root system is central for plant adaptation to soil heterogeneity and is organized primarily by root branching. To search for compounds that regulate root branching, a forward chemical genetics screen was employed, and 4-methylumbelliferone (4-MU), a coumarin derivative, was found to be a potent regulator of lateral root formation. Exogenous application of 4-MU to Arabidopsis thaliana seeds affected germination and led to reduced primary root growth, the formation of bulbous root hairs, and irregular detached root caps accompanied by reorganization of the actin cytoskeleton in root tips before seedling establishment. Abundant lateral roots formed after exposure to 125 μM 4-MU for 22 days. Molecular, biochemical, and phytochemical approaches were used to determine the effect of 4-MU on root growth and root branching. Arabidopsis seedlings grown in the presence of 4-MU accumulated this compound only in roots, where it was partially transformed by UDP-glycosyltransferases (UGTs) into 4-methylumbelliferyl-β-D-glucoside (4-MU-Glc). The presence of 4-MU-Glc in seedling roots was consistent with the upregulation of several genes that encode UGTs in the roots. This shows that UGTs play an integral role in the detoxification of 4-MU in plants. The increased expression of two auxin efflux facilitator genes (PIN2 and PIN3) in response to 4-MU and the lack of response of the auxin receptor TIR1 and the key auxin biosynthetic gene YUCCA1 suggest that auxin redistribution, rather than auxin biosynthesis, may directly or indirectly mediate 4-MU-induced root branching.
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Affiliation(s)
- Xiang Li
- College of Plant Sciences, Jilin University, Changchun, 130062, China
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Terenius O, Papanicolaou A, Garbutt JS, Eleftherianos I, Huvenne H, Kanginakudru S, Albrechtsen M, An C, Aymeric JL, Barthel A, Bebas P, Bitra K, Bravo A, Chevalier F, Collinge DP, Crava CM, de Maagd RA, Duvic B, Erlandson M, Faye I, Felföldi G, Fujiwara H, Futahashi R, Gandhe AS, Gatehouse HS, Gatehouse LN, Giebultowicz JM, Gómez I, Grimmelikhuijzen CJP, Groot AT, Hauser F, Heckel DG, Hegedus DD, Hrycaj S, Huang L, Hull JJ, Iatrou K, Iga M, Kanost MR, Kotwica J, Li C, Li J, Liu J, Lundmark M, Matsumoto S, Meyering-Vos M, Millichap PJ, Monteiro A, Mrinal N, Niimi T, Nowara D, Ohnishi A, Oostra V, Ozaki K, Papakonstantinou M, Popadic A, Rajam MV, Saenko S, Simpson RM, Soberón M, Strand MR, Tomita S, Toprak U, Wang P, Wee CW, Whyard S, Zhang W, Nagaraju J, Ffrench-Constant RH, Herrero S, Gordon K, Swevers L, Smagghe G. RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design. J Insect Physiol 2011; 57:231-45. [PMID: 21078327 DOI: 10.1016/j.jinsphys.2010.11.006] [Citation(s) in RCA: 537] [Impact Index Per Article: 41.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2010] [Revised: 11/03/2010] [Accepted: 11/04/2010] [Indexed: 05/03/2023]
Abstract
Gene silencing through RNA interference (RNAi) has revolutionized the study of gene function, particularly in non-model insects. However, in Lepidoptera (moths and butterflies) RNAi has many times proven to be difficult to achieve. Most of the negative results have been anecdotal and the positive experiments have not been collected in such a way that they are possible to analyze. In this review, we have collected detailed data from more than 150 experiments including all to date published and many unpublished experiments. Despite a large variation in the data, trends that are found are that RNAi is particularly successful in the family Saturniidae and in genes involved in immunity. On the contrary, gene expression in epidermal tissues seems to be most difficult to silence. In addition, gene silencing by feeding dsRNA requires high concentrations for success. Possible causes for the variability of success in RNAi experiments in Lepidoptera are discussed. The review also points to a need to further investigate the mechanism of RNAi in lepidopteran insects and its possible connection to the innate immune response. Our general understanding of RNAi in Lepidoptera will be further aided in the future as our public database at http://insectacentral.org/RNAi will continue to gather information on RNAi experiments.
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Affiliation(s)
- Olle Terenius
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
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