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Lu AT, Fei Z, Haghani A, Robeck TR, Zoller JA, Li CZ, Lowe R, Yan Q, Zhang J, Vu H, Ablaeva J, Acosta-Rodriguez VA, Adams DM, Almunia J, Aloysius A, Ardehali R, Arneson A, Baker CS, Banks G, Belov K, Bennett NC, Black P, Blumstein DT, Bors EK, Breeze CE, Brooke RT, Brown JL, Carter GG, Caulton A, Cavin JM, Chakrabarti L, Chatzistamou I, Chen H, Cheng K, Chiavellini P, Choi OW, Clarke SM, Cooper LN, Cossette ML, Day J, DeYoung J, DiRocco S, Dold C, Ehmke EE, Emmons CK, Emmrich S, Erbay E, Erlacher-Reid C, Faulkes CG, Ferguson SH, Finno CJ, Flower JE, Gaillard JM, Garde E, Gerber L, Gladyshev VN, Gorbunova V, Goya RG, Grant MJ, Green CB, Hales EN, Hanson MB, Hart DW, Haulena M, Herrick K, Hogan AN, Hogg CJ, Hore TA, Huang T, Izpisua Belmonte JC, Jasinska AJ, Jones G, Jourdain E, Kashpur O, Katcher H, Katsumata E, Kaza V, Kiaris H, Kobor MS, Kordowitzki P, Koski WR, Krützen M, Kwon SB, Larison B, Lee SG, Lehmann M, Lemaitre JF, Levine AJ, Li C, Li X, Lim AR, Lin DTS, Lindemann DM, Little TJ, Macoretta N, Maddox D, Matkin CO, Mattison JA, McClure M, Mergl J, Meudt JJ, Montano GA, Mozhui K, Munshi-South J, Naderi A, Nagy M, Narayan P, Nathanielsz PW, Nguyen NB, Niehrs C, O'Brien JK, O'Tierney Ginn P, Odom DT, Ophir AG, Osborn S, Ostrander EA, Parsons KM, Paul KC, Pellegrini M, Peters KJ, Pedersen AB, Petersen JL, Pietersen DW, Pinho GM, Plassais J, Poganik JR, Prado NA, Reddy P, Rey B, Ritz BR, Robbins J, Rodriguez M, Russell J, Rydkina E, Sailer LL, Salmon AB, Sanghavi A, Schachtschneider KM, Schmitt D, Schmitt T, Schomacher L, Schook LB, Sears KE, Seifert AW, Seluanov A, Shafer ABA, Shanmuganayagam D, Shindyapina AV, Simmons M, Singh K, Sinha I, Slone J, Snell RG, Soltanmaohammadi E, Spangler ML, Spriggs MC, Staggs L, Stedman N, Steinman KJ, Stewart DT, Sugrue VJ, Szladovits B, Takahashi JS, Takasugi M, Teeling EC, Thompson MJ, Van Bonn B, Vernes SC, Villar D, Vinters HV, Wallingford MC, Wang N, Wayne RK, Wilkinson GS, Williams CK, Williams RW, Yang XW, Yao M, Young BG, Zhang B, Zhang Z, Zhao P, Zhao Y, Zhou W, Zimmermann J, Ernst J, Raj K, Horvath S. Author Correction: Universal DNA methylation age across mammalian tissues. Nat Aging 2023;3:1462. [PMID: 37674040 PMCID: PMC10645586 DOI: 10.1038/s43587-023-00499-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/08/2023]

Affiliation(s)

A T Lu Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
Z Fei Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA Department of Statistics, University of California, Riverside, Riverside, CA, USA
A Haghani Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
T R Robeck Zoological SeaWorld Parks and Entertainment, Orlando, FL, USA
J A Zoller Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
C Z Li Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
R Lowe Altos Labs, Cambridge Institute of Science, Cambridge, UK
Q Yan Altos Labs, San Diego Institute of Science, San Diego, CA, USA
J Zhang Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
H Vu Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
J Ablaeva Department of Biology, University of Rochester, Rochester, NY, USA
V A Acosta-Rodriguez Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
D M Adams Department of Biology, University of Maryland, College Park, MD, USA
J Almunia Loro Parque Fundacion, Puerto de la Cruz, Spain
A Aloysius Department of Biology, University of Kentucky, Lexington, KY, USA
R Ardehali Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A Arneson Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
C S Baker Marine Mammal Institute, Oregon State University, Newport, OR, USA
G Banks School of Science and Technology, Clifton Campus, Nottingham Trent University, Nottingham, UK
K Belov School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
N C Bennett Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
P Black Busch Gardens Tampa, Tampa, FL, USA
D T Blumstein Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA Rocky Mountain Biological Laboratory, Crested Butte, CO, USA
E K Bors Marine Mammal Institute, Oregon State University, Newport, OR, USA
C E Breeze Altius Institute for Biomedical Sciences, Seattle, WA, USA
R T Brooke Epigenetic Clock Development Foundation, Los Angeles, CA, USA
J L Brown Center for Species Survival, Smithsonian Conservation Biology Institute, Front Royal, VA, USA
G G Carter Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
A Caulton AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand Department of Biochemistry, University of Otago, Dunedin, New Zealand
J M Cavin Gulf World, Dolphin Company, Panama City Beach, FL, USA
L Chakrabarti School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK
I Chatzistamou Department of Pathology, Microbiology and Immunology, School of Medicine, University of South Carolina, Columbia, SC, USA
H Chen Department of Pharmacology, Addiction Science and Toxicology, the University of Tennessee Health Science Center, Memphis, TN, USA
K Cheng Medical Informatics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
P Chiavellini Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
O W Choi Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S M Clarke AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand
L N Cooper Department of Anatomy and Neurobiology, Northeast Ohio Medical University, Rootstown, OH, USA
M L Cossette Department of Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
J Day Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
J DeYoung Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S DiRocco SeaWorld of Florida, Orlando, FL, USA
C Dold Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
E E Ehmke Duke Lemur Center, Durham, NC, USA
C K Emmons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
S Emmrich Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E Erbay Altos Labs, San Francisco, CA, USA
C Erlacher-Reid SeaWorld of Florida, Orlando, FL, USA SeaWorld Orlando, Orlando, FL, USA
C G Faulkes School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK
S H Ferguson Fisheries and Oceans Canada, Freshwater Institute, Winnipeg, Manitoba, Canada Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, Canada
C J Finno Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
J E Flower Mystic Aquarium, Mystic, CT, USA
J M Gaillard Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
E Garde Greenland Institute of Natural Resources, Nuuk, Greenland
L Gerber Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, New South Wales, Australia
V N Gladyshev Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
V Gorbunova Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
R G Goya Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
M J Grant Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
C B Green Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
E N Hales Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
M B Hanson Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
D W Hart Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
M Haulena Vancouver Aquarium, Vancouver, British Columbia, Canada
K Herrick SeaWorld of California, San Diego, CA, USA
A N Hogan Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
C J Hogg School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
T A Hore Department of Anatomy, University of Otago, Dunedin, New Zealand
T Huang Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA Division of Genetics and Metabolism, Oishei Children's Hospital, Buffalo, NY, USA
J C Izpisua Belmonte Altos Labs, San Diego Institute of Science, San Diego, CA, USA
A J Jasinska Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
G Jones School of Biological Sciences, University of Bristol, Bristol, UK
E Jourdain Norwegian Orca Survey, Andenes, Norway
O Kashpur Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA
H Katcher Yuvan Research, Mountain View, CA, USA
E Katsumata Kamogawa Sea World, Kamogawa, Japan
V Kaza Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA
H Kiaris Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M S Kobor Edwin S.H. Leong Healthy Aging Program, Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, British Columbia, Canada
P Kordowitzki Institute of Animal Reproduction and Food Research of the Polish Academy of Sciences, Olsztyn, Poland Institute for Veterinary Medicine, Nicolaus Copernicus University, Torun, Poland
W R Koski LGL Limited, King City, Ontario, Canada
M Krützen Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland
S B Kwon Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
B Larison Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Center for Tropical Research, Institute for the Environment and Sustainability, UCLA, Los Angeles, CA, USA
S G Lee Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Lehmann Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
J F Lemaitre Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
A J Levine Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Li Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
X Li Technology Center for Genomics and Bioinformatics, Department of Pathology and Laboratory Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A R Lim Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
D T S Lin Centre for Molecular Medicine and Therapeutics, BC Children's Hospital Research Institute, University of British Columbia, Vancouver, British Columbia, Canada
D M Lindemann SeaWorld of Florida, Orlando, FL, USA
T J Little Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
N Macoretta Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
D Maddox White Oak Conservation, Yulee, FL, USA
C O Matkin North Gulf Oceanic Society, Homer, AK, USA
J A Mattison Translational Gerontology Branch, National Institute on Aging Intramural Research Program, National Institutes of Health, Baltimore, MD, USA
M McClure ABS Global, DeForest, WI, USA
J Mergl Marineland of Canada, Niagara Falls, Ontario, Canada
J J Meudt Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA
G A Montano Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
K Mozhui Department of Preventive Medicine, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
J Munshi-South Louis Calder Center-Biological Field Station, Department of Biological Sciences, Fordham University, Armonk, NY, USA
A Naderi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M Nagy Museum fur Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
P Narayan Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
P W Nathanielsz Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
N B Nguyen Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Niehrs Institute of Molecular Biology, Mainz, Germany Division of Molecular Embryology, DKFZ-ZMBH Alliance, Heidelberg, Germany
J K O'Brien Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
P O'Tierney Ginn Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Department of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
D T Odom Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK Division of Regulatory Genomics and Cancer Evolution, Deutsches Krebsforschungszentrum, Heidelberg, Germany
A G Ophir Department of Psychology, Cornell University, Ithaca, NY, USA
S Osborn SeaWorld of Texas, San Antonio, TX, USA
E A Ostrander Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
K M Parsons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
K C Paul Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
M Pellegrini Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
K J Peters Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, Australia
A B Pedersen Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
J L Petersen Department of Animal Science, University of Nebraska, Lincoln, NE, USA
D W Pietersen Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
G M Pinho Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Plassais Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
J R Poganik Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
N A Prado Department of Biology, College of Arts and Science, Adelphi University, Garden City, NY, USA
P Reddy Altos Labs, San Diego Institute of Science, San Diego, CA, USA Salk Institute for Biological Studies, La Jolla, CA, USA
B Rey Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
B R Ritz Department of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Environmental Health Sciences, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Neurology, UCLA David Geffen School of Medicine, Los Angeles, CA, USA
J Robbins Center for Coastal Studies, Provincetown, MA, USA
M Rodriguez Miami Seaquarium, Miami, FL, USA
J Russell SeaWorld of California, San Diego, CA, USA
E Rydkina Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
L L Sailer Department of Psychology, Cornell University, Ithaca, NY, USA
A B Salmon The Sam and Ann Barshop Institute for Longevity and Aging Studies and Department of Molecular Medicine, UT Health San Antonio and the Geriatric Research Education and Clinical Center, South Texas Veterans Healthcare System, San Antonio, TX, USA
A Sanghavi Yuvan Research, Mountain View, CA, USA
K M Schachtschneider Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL, USA National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, USA
D Schmitt College of Agriculture, Missouri State University, Springfield, MO, USA
T Schmitt SeaWorld of California, San Diego, CA, USA
L Schomacher Institute of Molecular Biology, Mainz, Germany
L B Schook Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, IL, USA
K E Sears Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
A W Seifert Department of Biology, University of Kentucky, Lexington, KY, USA
A Seluanov Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
A B A Shafer Department of Forensic Science, Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
D Shanmuganayagam Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA Department of Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA
A V Shindyapina Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Simmons Duke Lemur Center, Durham, NC, USA
K Singh Shobhaben Pratapbhai Patel School of Pharmacy and Technology Management, SVKM'S NMIMS University, Mumbai, India
I Sinha Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Slone Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA
R G Snell Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
E Soltanmaohammadi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M L Spangler Department of Animal Science, University of Nebraska, Lincoln, NE, USA
M C Spriggs Busch Gardens Tampa, Tampa, FL, USA
L Staggs SeaWorld of Florida, Orlando, FL, USA
N Stedman Busch Gardens Tampa, Tampa, FL, USA
K J Steinman Species Preservation Laboratory, SeaWorld San Diego, San Diego, CA, USA
D T Stewart Biology Department, Acadia University, Wolfville, Nova Scotia, Canada
V J Sugrue Department of Anatomy, University of Otago, Dunedin, New Zealand
B Szladovits Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, UK
J S Takahashi Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA Howard Hughes Medical Institute, Department of Neuroscience, University of Texas Southwestern Medical Center, Dallas, TX, USA
M Takasugi Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E C Teeling School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
M J Thompson Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
B Van Bonn John G. Shedd Aquarium, Chicago, IL, USA
S C Vernes School of Biology, the University of St Andrews, Fife, UK Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
D Villar Blizard Institute, Faculty of Medicine and Dentistry, Queen Mary University of London, London, UK
H V Vinters Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M C Wallingford Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Division of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
N Wang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
R K Wayne Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
G S Wilkinson Department of Biology, University of Maryland, College Park, MD, USA
C K Williams Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
R W Williams Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
X W Yang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M Yao Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
B G Young Fisheries and Oceans Canada, Winnipeg, Manitoba, Canada
B Zhang Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
Z Zhang Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
P Zhao Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, CA, USA
Y Zhao Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
W Zhou Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA
J Zimmermann Department of Mathematics and Technology, University of Applied Sciences Koblenz, Koblenz, Germany
J Ernst Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
K Raj Altos Labs, Cambridge Institute of Science, Cambridge, UK
S Horvath Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA. Altos Labs, San Diego Institute of Science, San Diego, CA, USA. Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA.

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Lu AT, Fei Z, Haghani A, Robeck TR, Zoller JA, Li CZ, Lowe R, Yan Q, Zhang J, Vu H, Ablaeva J, Acosta-Rodriguez VA, Adams DM, Almunia J, Aloysius A, Ardehali R, Arneson A, Baker CS, Banks G, Belov K, Bennett NC, Black P, Blumstein DT, Bors EK, Breeze CE, Brooke RT, Brown JL, Carter GG, Caulton A, Cavin JM, Chakrabarti L, Chatzistamou I, Chen H, Cheng K, Chiavellini P, Choi OW, Clarke SM, Cooper LN, Cossette ML, Day J, DeYoung J, DiRocco S, Dold C, Ehmke EE, Emmons CK, Emmrich S, Erbay E, Erlacher-Reid C, Faulkes CG, Ferguson SH, Finno CJ, Flower JE, Gaillard JM, Garde E, Gerber L, Gladyshev VN, Gorbunova V, Goya RG, Grant MJ, Green CB, Hales EN, Hanson MB, Hart DW, Haulena M, Herrick K, Hogan AN, Hogg CJ, Hore TA, Huang T, Izpisua Belmonte JC, Jasinska AJ, Jones G, Jourdain E, Kashpur O, Katcher H, Katsumata E, Kaza V, Kiaris H, Kobor MS, Kordowitzki P, Koski WR, Krützen M, Kwon SB, Larison B, Lee SG, Lehmann M, Lemaitre JF, Levine AJ, Li C, Li X, Lim AR, Lin DTS, Lindemann DM, Little TJ, Macoretta N, Maddox D, Matkin CO, Mattison JA, McClure M, Mergl J, Meudt JJ, Montano GA, Mozhui K, Munshi-South J, Naderi A, Nagy M, Narayan P, Nathanielsz PW, Nguyen NB, Niehrs C, O'Brien JK, O'Tierney Ginn P, Odom DT, Ophir AG, Osborn S, Ostrander EA, Parsons KM, Paul KC, Pellegrini M, Peters KJ, Pedersen AB, Petersen JL, Pietersen DW, Pinho GM, Plassais J, Poganik JR, Prado NA, Reddy P, Rey B, Ritz BR, Robbins J, Rodriguez M, Russell J, Rydkina E, Sailer LL, Salmon AB, Sanghavi A, Schachtschneider KM, Schmitt D, Schmitt T, Schomacher L, Schook LB, Sears KE, Seifert AW, Seluanov A, Shafer ABA, Shanmuganayagam D, Shindyapina AV, Simmons M, Singh K, Sinha I, Slone J, Snell RG, Soltanmaohammadi E, Spangler ML, Spriggs MC, Staggs L, Stedman N, Steinman KJ, Stewart DT, Sugrue VJ, Szladovits B, Takahashi JS, Takasugi M, Teeling EC, Thompson MJ, Van Bonn B, Vernes SC, Villar D, Vinters HV, Wallingford MC, Wang N, Wayne RK, Wilkinson GS, Williams CK, Williams RW, Yang XW, Yao M, Young BG, Zhang B, Zhang Z, Zhao P, Zhao Y, Zhou W, Zimmermann J, Ernst J, Raj K, Horvath S. Universal DNA methylation age across mammalian tissues. Nat Aging 2023;3:1144-1166. [PMID: 37563227 PMCID: PMC10501909 DOI: 10.1038/s43587-023-00462-6] [Citation(s) in RCA: 38] [Impact Index Per Article: 38.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 06/21/2023] [Indexed: 08/12/2023]

Affiliation(s)

A T Lu Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
Z Fei Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA Department of Statistics, University of California, Riverside, Riverside, CA, USA
A Haghani Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Altos Labs, San Diego Institute of Science, San Diego, CA, USA
T R Robeck Zoological SeaWorld Parks and Entertainment, Orlando, FL, USA
J A Zoller Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
C Z Li Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
R Lowe Altos Labs, Cambridge Institute of Science, Cambridge, UK
Q Yan Altos Labs, San Diego Institute of Science, San Diego, CA, USA
J Zhang Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
H Vu Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
J Ablaeva Department of Biology, University of Rochester, Rochester, NY, USA
V A Acosta-Rodriguez Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
D M Adams Department of Biology, University of Maryland, College Park, MD, USA
J Almunia Loro Parque Fundacion, Puerto de la Cruz, Spain
A Aloysius Department of Biology, University of Kentucky, Lexington, KY, USA
R Ardehali Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A Arneson Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
C S Baker Marine Mammal Institute, Oregon State University, Newport, OR, USA
G Banks School of Science and Technology, Clifton Campus, Nottingham Trent University, Nottingham, UK
K Belov School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
N C Bennett Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
P Black Busch Gardens Tampa, Tampa, FL, USA
D T Blumstein Department of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA Rocky Mountain Biological Laboratory, Crested Butte, CO, USA
E K Bors Marine Mammal Institute, Oregon State University, Newport, OR, USA
C E Breeze Altius Institute for Biomedical Sciences, Seattle, WA, USA
R T Brooke Epigenetic Clock Development Foundation, Los Angeles, CA, USA
J L Brown Center for Species Survival, Smithsonian Conservation Biology Institute, Front Royal, VA, USA
G G Carter Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, OH, USA
A Caulton AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand Department of Biochemistry, University of Otago, Dunedin, New Zealand
J M Cavin Gulf World, Dolphin Company, Panama City Beach, FL, USA
L Chakrabarti School of Veterinary Medicine and Science, University of Nottingham, Nottingham, UK
I Chatzistamou Department of Pathology, Microbiology and Immunology, School of Medicine, University of South Carolina, Columbia, SC, USA
H Chen Department of Pharmacology, Addiction Science and Toxicology, the University of Tennessee Health Science Center, Memphis, TN, USA
K Cheng Medical Informatics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
P Chiavellini Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
O W Choi Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S M Clarke AgResearch, Invermay Agricultural Centre, Mosgiel, New Zealand
L N Cooper Department of Anatomy and Neurobiology, Northeast Ohio Medical University, Rootstown, OH, USA
M L Cossette Department of Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
J Day Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
J DeYoung Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
S DiRocco SeaWorld of Florida, Orlando, FL, USA
C Dold Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
E E Ehmke Duke Lemur Center, Durham, NC, USA
C K Emmons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
S Emmrich Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E Erbay Altos Labs, San Francisco, CA, USA
C Erlacher-Reid SeaWorld of Florida, Orlando, FL, USA SeaWorld Orlando, Orlando, FL, USA
C G Faulkes School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK
S H Ferguson Fisheries and Oceans Canada, Freshwater Institute, Winnipeg, Manitoba, Canada Department of Biological Sciences, University of Manitoba, Winnipeg, Manitoba, Canada
C J Finno Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
J E Flower Mystic Aquarium, Mystic, CT, USA
J M Gaillard Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
E Garde Greenland Institute of Natural Resources, Nuuk, Greenland
L Gerber Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, UNSW Sydney, Sydney, New South Wales, Australia
V N Gladyshev Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
V Gorbunova Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
R G Goya Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
M J Grant Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
C B Green Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA
E N Hales Department of Population Health and Reproduction, University of California, Davis School of Veterinary Medicine, Davis, CA, USA
M B Hanson Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
D W Hart Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
M Haulena Vancouver Aquarium, Vancouver, British Columbia, Canada
K Herrick SeaWorld of California, San Diego, CA, USA
A N Hogan Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
C J Hogg School of Life and Environmental Sciences, the University of Sydney, Sydney, New South Wales, Australia
T A Hore Department of Anatomy, University of Otago, Dunedin, New Zealand
T Huang Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA Division of Genetics and Metabolism, Oishei Children's Hospital, Buffalo, NY, USA
J C Izpisua Belmonte Altos Labs, San Diego Institute of Science, San Diego, CA, USA
A J Jasinska Center for Neurobehavioral Genetics, Semel Institute for Neuroscience and Human Behavior, Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
G Jones School of Biological Sciences, University of Bristol, Bristol, UK
E Jourdain Norwegian Orca Survey, Andenes, Norway
O Kashpur Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA
H Katcher Yuvan Research, Mountain View, CA, USA
E Katsumata Kamogawa Sea World, Kamogawa, Japan
V Kaza Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA
H Kiaris Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, USA Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M S Kobor Edwin S.H. Leong Healthy Aging Program, Centre for Molecular Medicine and Therapeutics, University of British Columbia, Vancouver, British Columbia, Canada
P Kordowitzki Institute of Animal Reproduction and Food Research of the Polish Academy of Sciences, Olsztyn, Poland Institute for Veterinary Medicine, Nicolaus Copernicus University, Torun, Poland
W R Koski LGL Limited, King City, Ontario, Canada
M Krützen Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland
S B Kwon Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
B Larison Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Center for Tropical Research, Institute for the Environment and Sustainability, UCLA, Los Angeles, CA, USA
S G Lee Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Lehmann Biochemistry Research Institute of La Plata, Histology and Pathology, School of Medicine, University of La Plata, La Plata, Argentina
J F Lemaitre Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
A J Levine Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Li Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
X Li Technology Center for Genomics and Bioinformatics, Department of Pathology and Laboratory Medicine, University of California, Los Angeles, Los Angeles, CA, USA
A R Lim Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
D T S Lin Centre for Molecular Medicine and Therapeutics, BC Children's Hospital Research Institute, University of British Columbia, Vancouver, British Columbia, Canada
D M Lindemann SeaWorld of Florida, Orlando, FL, USA
T J Little Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
N Macoretta Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
D Maddox White Oak Conservation, Yulee, FL, USA
C O Matkin North Gulf Oceanic Society, Homer, AK, USA
J A Mattison Translational Gerontology Branch, National Institute on Aging Intramural Research Program, National Institutes of Health, Baltimore, MD, USA
M McClure ABS Global, DeForest, WI, USA
J Mergl Marineland of Canada, Niagara Falls, Ontario, Canada
J J Meudt Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA
G A Montano Zoological Operations, SeaWorld Parks and Entertainment, Orlando, FL, USA
K Mozhui Department of Preventive Medicine, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
J Munshi-South Louis Calder Center-Biological Field Station, Department of Biological Sciences, Fordham University, Armonk, NY, USA
A Naderi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M Nagy Museum fur Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany
P Narayan Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
P W Nathanielsz Texas Pregnancy and Life-course Health Center, Southwest National Primate Research Center, San Antonio, TX, USA Department of Animal Science, College of Agriculture and Natural Resources, Laramie, WY, USA
N B Nguyen Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
C Niehrs Institute of Molecular Biology, Mainz, Germany Division of Molecular Embryology, DKFZ-ZMBH Alliance, Heidelberg, Germany
J K O'Brien Taronga Institute of Science and Learning, Taronga Conservation Society Australia, Mosman, New South Wales, Australia
P O'Tierney Ginn Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Department of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
D T Odom Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK Division of Regulatory Genomics and Cancer Evolution, Deutsches Krebsforschungszentrum, Heidelberg, Germany
A G Ophir Department of Psychology, Cornell University, Ithaca, NY, USA
S Osborn SeaWorld of Texas, San Antonio, TX, USA
E A Ostrander Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
K M Parsons Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA, USA
K C Paul Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
M Pellegrini Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
K J Peters Evolutionary Genetics Group, Department of Evolutionary Anthropology, University of Zurich, Zurich, Switzerland School of Earth, Atmospheric and Life Sciences, University of Wollongong, Wollongong, Australia
A B Pedersen Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
J L Petersen Department of Animal Science, University of Nebraska, Lincoln, NE, USA
D W Pietersen Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Hatfield, South Africa
G M Pinho Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Plassais Cancer Genetics and Comparative Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
J R Poganik Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
N A Prado Department of Biology, College of Arts and Science, Adelphi University, Garden City, NY, USA
P Reddy Altos Labs, San Diego Institute of Science, San Diego, CA, USA Salk Institute for Biological Studies, La Jolla, CA, USA
B Rey Universite de Lyon, Universite Lyon 1, CNRS, Laboratoire de Biometrie et Biologie Evolutive, Villeurbanne, France
B R Ritz Department of Epidemiology, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Environmental Health Sciences, UCLA Fielding School of Public Health, Los Angeles, CA, USA Department of Neurology, UCLA David Geffen School of Medicine, Los Angeles, CA, USA
J Robbins Center for Coastal Studies, Provincetown, MA, USA
M Rodriguez Miami Seaquarium, Miami, FL, USA
J Russell SeaWorld of California, San Diego, CA, USA
E Rydkina Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
L L Sailer Department of Psychology, Cornell University, Ithaca, NY, USA
A B Salmon The Sam and Ann Barshop Institute for Longevity and Aging Studies and Department of Molecular Medicine, UT Health San Antonio and the Geriatric Research Education and Clinical Center, South Texas Veterans Healthcare System, San Antonio, TX, USA
A Sanghavi Yuvan Research, Mountain View, CA, USA
K M Schachtschneider Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL, USA National Center for Supercomputing Applications, University of Illinois at Urbana-Champaign, Urbana, IL, USA
D Schmitt College of Agriculture, Missouri State University, Springfield, MO, USA
T Schmitt SeaWorld of California, San Diego, CA, USA
L Schomacher Institute of Molecular Biology, Mainz, Germany
L B Schook Department of Radiology, University of Illinois at Chicago, Chicago, IL, USA Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, IL, USA
K E Sears Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
A W Seifert Department of Biology, University of Kentucky, Lexington, KY, USA
A Seluanov Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
A B A Shafer Department of Forensic Science, Environmental and Life Sciences, Trent University, Peterborough, Ontario, Canada
D Shanmuganayagam Biomedical and Genomic Research Group, Department of Animal and Dairy Sciences, University of Wisconsin-Madison, Madison, WI, USA Department of Surgery, University of Wisconsin School of Medicine and Public Health, Madison, WI, USA
A V Shindyapina Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
M Simmons Duke Lemur Center, Durham, NC, USA
K Singh Shobhaben Pratapbhai Patel School of Pharmacy and Technology Management, SVKM'S NMIMS University, Mumbai, India
I Sinha Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
J Slone Division of Human Genetics, Department of Pediatrics, University at Buffalo, Buffalo, NY, USA
R G Snell Applied Translational Genetics Group, School of Biological Sciences, Centre for Brain Research, the University of Auckland, Auckland, New Zealand
E Soltanmaohammadi Department of Drug Discovery and Biomedical Sciences, College of Pharmacy, University of South Carolina, Columbia, SC, USA
M L Spangler Department of Animal Science, University of Nebraska, Lincoln, NE, USA
M C Spriggs Busch Gardens Tampa, Tampa, FL, USA
L Staggs SeaWorld of Florida, Orlando, FL, USA
N Stedman Busch Gardens Tampa, Tampa, FL, USA
K J Steinman Species Preservation Laboratory, SeaWorld San Diego, San Diego, CA, USA
D T Stewart Biology Department, Acadia University, Wolfville, Nova Scotia, Canada
V J Sugrue Department of Anatomy, University of Otago, Dunedin, New Zealand
B Szladovits Department of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, UK
J S Takahashi Department of Neuroscience, Peter O'Donnell Jr. Brain Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA Howard Hughes Medical Institute, Department of Neuroscience, University of Texas Southwestern Medical Center, Dallas, TX, USA
M Takasugi Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
E C Teeling School of Biology and Environmental Science, University College Dublin, Dublin, Ireland
M J Thompson Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA, USA
B Van Bonn John G. Shedd Aquarium, Chicago, IL, USA
S C Vernes School of Biology, the University of St Andrews, Fife, UK Neurogenetics of Vocal Communication Group, Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands
D Villar Blizard Institute, Faculty of Medicine and Dentistry, Queen Mary University of London, London, UK
H V Vinters Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M C Wallingford Mother Infant Research Institute, Tufts Medical Center, Boston, MA, USA Division of Obstetrics and Gynecology, Tufts University School of Medicine, Boston, MA, USA
N Wang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
R K Wayne Department of Ecology and Evolutionary Biology, UCLA, Los Angeles, CA, USA
G S Wilkinson Department of Biology, University of Maryland, College Park, MD, USA
C K Williams Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
R W Williams Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, College of Medicine, Memphis, TN, USA
X W Yang Center for Neurobehavioral Genetics, Jane and Terry Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, Los Angeles, CA, USA Department of Psychiatry and Biobehavioral Sciences, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA
M Yao Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA
B G Young Fisheries and Oceans Canada, Winnipeg, Manitoba, Canada
B Zhang Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
Z Zhang Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
P Zhao Division of Cardiology, Department of Internal Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, CA, USA
Y Zhao Departments of Biology and Medicine, University of Rochester, Rochester, NY, USA
W Zhou Center for Computational and Genomic Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA
J Zimmermann Department of Mathematics and Technology, University of Applied Sciences Koblenz, Koblenz, Germany
J Ernst Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA Department of Biological Chemistry, University of California, Los Angeles, Los Angeles, CA, USA
K Raj Altos Labs, Cambridge Institute of Science, Cambridge, UK
S Horvath Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA. Altos Labs, San Diego Institute of Science, San Diego, CA, USA. Department of Biostatistics, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA.

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Evaluation of prognostic risk models for postoperative pulmonary complications in adult patients undergoing major abdominal surgery: a systematic review and international external validation cohort study. Lancet Digit Health 2022;4:e520-e531. [PMID: 35750401 DOI: 10.1016/s2589-7500(22)00069-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 01/07/2022] [Accepted: 04/06/2022] [Indexed: 06/15/2023]

Abstract

BACKGROUND

Stratifying risk of postoperative pulmonary complications after major abdominal surgery allows clinicians to modify risk through targeted interventions and enhanced monitoring. In this study, we aimed to identify and validate prognostic models against a new consensus definition of postoperative pulmonary complications.

METHODS

We did a systematic review and international external validation cohort study. The systematic review was done in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines. We searched MEDLINE and Embase on March 1, 2020, for articles published in English that reported on risk prediction models for postoperative pulmonary complications following abdominal surgery. External validation of existing models was done within a prospective international cohort study of adult patients (≥18 years) undergoing major abdominal surgery. Data were collected between Jan 1, 2019, and April 30, 2019, in the UK, Ireland, and Australia. Discriminative ability and prognostic accuracy summary statistics were compared between models for the 30-day postoperative pulmonary complication rate as defined by the Standardised Endpoints in Perioperative Medicine Core Outcome Measures in Perioperative and Anaesthetic Care (StEP-COMPAC). Model performance was compared using the area under the receiver operating characteristic curve (AUROCC).

FINDINGS

In total, we identified 2903 records from our literature search; of which, 2514 (86·6%) unique records were screened, 121 (4·8%) of 2514 full texts were assessed for eligibility, and 29 unique prognostic models were identified. Nine (31·0%) of 29 models had score development reported only, 19 (65·5%) had undergone internal validation, and only four (13·8%) had been externally validated. Data to validate six eligible models were collected in the international external validation cohort study. Data from 11 591 patients were available, with an overall postoperative pulmonary complication rate of 7·8% (n=903). None of the six models showed good discrimination (defined as AUROCC ≥0·70) for identifying postoperative pulmonary complications, with the Assess Respiratory Risk in Surgical Patients in Catalonia score showing the best discrimination (AUROCC 0·700 [95% CI 0·683-0·717]).

INTERPRETATION

In the pre-COVID-19 pandemic data, variability in the risk of pulmonary complications (StEP-COMPAC definition) following major abdominal surgery was poorly described by existing prognostication tools. To improve surgical safety during the COVID-19 pandemic recovery and beyond, novel risk stratification tools are required.

FUNDING

British Journal of Surgery Society.

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Harwood R, Sinha I. Diagnosis of COVID-19 in children: the story evolves. BMC Med 2020;18:158. [PMID: 32460871 PMCID: PMC7254715 DOI: 10.1186/s12916-020-01631-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 05/14/2020] [Indexed: 12/17/2022] Open

Sinha I, Aluthge D, Ahn S. 3:45 PM Abstract No. 132 Machine learning may assist in the selection of candidates for outpatient liver ablation. J Vasc Interv Radiol 2020. [DOI: 10.1016/j.jvir.2019.12.164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open

Sinha I, Aluthge D, Ahn S. 3:27 PM Abstract No. 55 Predicting mortality following transjugular intrahepatic portosystemic shunt: a machine learning approach. J Vasc Interv Radiol 2020. [DOI: 10.1016/j.jvir.2019.12.079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open

Kerr AG, Sinha I, Dadvar S, Arner P, Dahlman I. Epigenetic regulation of diabetogenic adipose morphology. Mol Metab 2019;25:159-167. [PMID: 31031182 PMCID: PMC6600120 DOI: 10.1016/j.molmet.2019.04.009] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 04/13/2019] [Indexed: 12/17/2022] Open

Abstract

Objective

Hypertrophic white adipose tissue (WAT) morphology is associated with insulin resistance and type 2 diabetes. The mechanisms governing hyperplastic versus hypertrophic WAT expansion are poorly understood. We assessed if epigenetic modifications in adipocytes are associated with hypertrophic adipose morphology. A subset of genes with differentially methylated CpG-sites (DMS) in the promoters was taken forward for functional evaluation.

Methods

The study included 126 women who underwent abdominal subcutaneous biopsy to determine adipose morphology. Global transcriptome profiling was performed on WAT from 113 of the women, and CpG methylome profiling on isolated adipocytes from 78 women. Small interfering RNAs (siRNA) knockdown in human mesenchymal stem cells (hMSCs) was used to assess influence of specific genes on lipid storage.

Results

A higher proportion of CpG-sites were methylated in hypertrophic compared to hyperplastic WAT. Methylation at 35,138 CpG-sites was found to correlate to adipose morphology. 2,102 of these CpG-sites were also differentially methylated in T2D; 98% showed directionally consistent change in methylation in WAT hypertrophy and T2D. We identified 2,508 DMS in 638 adipose morphology-associated genes where methylation correlated with gene expression. These genes were over-represented in gene sets relevant to WAT hypertrophy, such as insulin resistance, lipolysis, extracellular matrix organization, and innate immunity. siRNA knockdown of ADH1B, AZGP1, C14orf180, GYG2, HADH, PRKAR2B, PFKFB3, and AQP7 influenced lipid storage and metabolism.

Conclusion

CpG methylation could be influential in determining adipose morphology and thereby constitute a novel antidiabetic target. We identified C14orf180 as a novel regulator of adipocyte lipid storage and possibly differentiation.

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Hypertrophic adipose morphology display a distinct adipocyte CpG-methylome profile.

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Adipose hypertrophy and type 2 diabetes display strong overlap in CpG-methylome profile.

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C14orf180 is a novel regulator of adipocyte lipid storage and possibly adipogenesis.

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Sinha I, Nabi M, Simko L, Wolfe A, Wiechman SA, Giatsidis G, Bharadia D, McMullen K, Gibran N, Kowalske K, Kazis LE, Ryan CM, Schneider JC. 57 Association of Head and Neck Burns With Long-term Patient-reported Dissatisfaction With Appearance: A Burn Model System National Database Study. J Burn Care Res 2019. [DOI: 10.1093/jbcr/irz013.060] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]

Affiliation(s)

I Sinha Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
M Nabi Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
L Simko Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
A Wolfe Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
S A Wiechman Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
G Giatsidis Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
D Bharadia Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
K McMullen Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
N Gibran Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
K Kowalske Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
L E Kazis Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
C M Ryan Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner
J C Schneider Brigham and Women’s Hospital, Boston, MA; Spaulding Rehabilitation Hospital, Charlestown, MA; University of Washington, Seattle, WA; University of California - San Francisco, San Francisco, CA; University of Washington Harborview, Seattle, WA; University of Texas Southwestern Medical Center, Dallas, TX; Boston University School of Public Health, Boston, MA; Massachusetts General Hospital; Shriner

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Sinha I, Ahn S, Aluthge D. 03:45 PM Abstract No. 136 Using an ensemble machine learning method to predict length of stay after uterine artery embolization. J Vasc Interv Radiol 2019. [DOI: 10.1016/j.jvir.2018.12.185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open

Sinha I, Aluthge D, McCarthy S, Ahn S. 03:09 PM Abstract No. 374 Machine learning can predict iatrogenic pneumothorax following lung biopsy. J Vasc Interv Radiol 2019. [DOI: 10.1016/j.jvir.2018.12.448] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open

Lindegren A, Schultz I, Sinha I, Cheung L, Khan AA, Tekle M, Wickman M, Halle M. Autologous fat transplantation alters gene expression patterns related to inflammation and hypoxia in the irradiated human breast. Br J Surg 2019;106:563-573. [PMID: 30802303 DOI: 10.1002/bjs.11072] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Revised: 06/20/2018] [Accepted: 11/01/2018] [Indexed: 12/28/2022]

Abstract

BACKGROUND

Radiation-induced fibrosis, an adverse effect of breast cancer treatment, is associated with functional and cosmetic impairment as well as surgical complications. Clinical reports suggest improvement following autologous fat transplantation, but the mechanisms underlying this effect are unknown. A global gene expression analysis was undertaken to identify genetic pathways dysregulated by radiation and evaluate the impact of autologous fat transplantation on gene expression.

METHODS

Adipose tissue biopsies were taken synchronously from irradiated and contralateral non-irradiated breasts, before and 1 year after autologous fat transplantation. Whole-genome gene expression analyses were performed, and Hallmark gene set analysis used to explore the effect of radiotherapy and autologous fat transplantation on gene expression.

RESULTS

Forty microarrays were analysed, using bilateral biopsies taken from ten patients before and after autologous fat transplantation. Forty-five pathways were identified among the 3000 most dysregulated transcripts after radiotherapy in irradiated compared with non-irradiated breast (P ≤ 0·023; false discovery rate (FDR) no higher than 0·026). After autologous fat transplantation, 575 of the 3000 genes were again altered. Thirteen pathways (P ≤ 0·013; FDR 0·050 or less) were identified; the top two canonical pathways were interferon-γ response and hypoxia. Correlative immunohistochemistry showed increased macrophage recruitment in irradiated tissues.

CONCLUSION

The present findings contribute to understanding of how autologous fat transplantation can ameliorate radiation-induced fibrosis. This further supports the use of autologous fat transplantation in the treatment of radiation-induced fibrosis. Surgical relevance Clinical studies have indicated that autologous fat transplantation (AFT) stimulates regression of chronic inflammation and fibrosis caused by radiotherapy in skin and subcutaneous fat. However, there is a paucity of biological evidence and the underlying processes are poorly understood. Human data are scarce, whereas experimental studies have focused mainly either on the effect of irradiation or AFT alone. The present results indicate that radiotherapy causes dysregulated gene expression in fibrosis-related pathways in adipose tissues in humans. They also show that AFT can cause a reversal of this, with several dysregulated genes returning to nearly normal expression levels. The study provides biological evidence for the impact of AFT on radiation-induced dysregulated gene expression in humans. It supports the use of AFT in the treatment of radiation-induced fibrosis, associated with severe morbidity and surgical challenges.

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Sinha I, Woodrow CJ. Forces acting on codon bias in malaria parasites. Sci Rep 2018;8:15984. [PMID: 30374097 PMCID: PMC6206010 DOI: 10.1038/s41598-018-34404-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Accepted: 10/16/2018] [Indexed: 11/09/2022] Open

Kleiner J, Cohen M, Aluthge D, Sinha I, Roque D. Predicting thromboembolism after total abdominal hysterectomy in gynecologic oncology patients using machine learning: A national database study. Gynecol Oncol 2018. [DOI: 10.1016/j.ygyno.2018.04.350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]

Sinha R, Sinha I, Calcagnotto A, Trushin N, Haley JS, Schell TD, Richie JP. Oral supplementation with liposomal glutathione elevates body stores of glutathione and markers of immune function. Eur J Clin Nutr 2017;72:105-111. [PMID: 28853742 DOI: 10.1038/ejcn.2017.132] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Revised: 05/25/2017] [Accepted: 07/19/2017] [Indexed: 02/06/2023]

Gupta RK, Verma A, Sinha I, Malviya M. Oxygen reduction reaction on anisotropic silver nanoparticles in alkaline media. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.05.031] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]

Cleator A, Mayell S, Southern K, Sinha I. EPS1.10 Misleading conclusions (“spin”) in the abstracts of published randomised controlled trial reports in cystic fibrosis. J Cyst Fibros 2017. [DOI: 10.1016/s1569-1993(17)30283-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]

Hens JR, Sinha I, Perodin F, Cooper T, Sinha R, Plummer J, Perrone CE, Orentreich D. Erratum to: Methionine-restricted diet inhibits growth of MCF10AT1-derived mammary tumors by increasing cell cycle inhibitors in athymic nude mice. BMC Cancer 2016;16:474. [PMID: 27417544 PMCID: PMC4944442 DOI: 10.1186/s12885-016-2404-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2016] [Accepted: 06/16/2016] [Indexed: 11/24/2022] Open

Hens JR, Sinha I, Perodin F, Cooper T, Sinha R, Plummer J, Perrone CE, Orentreich D. Methionine-restricted diet inhibits growth of MCF10AT1-derived mammary tumors by increasing cell cycle inhibitors in athymic nude mice. BMC Cancer 2016;16:349. [PMID: 27255182 PMCID: PMC4891836 DOI: 10.1186/s12885-016-2367-1] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2015] [Accepted: 05/17/2016] [Indexed: 12/26/2022] Open

Abstract

Background

Dietary methionine restriction (MR) improves healthspan in part by reducing adiposity and by increasing insulin sensitivity in rodent models. The purpose of this study was to determine whether MR inhibits tumor progression in breast cancer xenograft model and breast cancer cell lines.

Methods

Athymic nude mice were injected with MCF10AT1 cells in Matrigel® and fed a diet containing either 0.86 % methionine (control fed, CF), or 0.12 % methionine (MR) for 12 weeks. Plasma amino acid concentrations were measured by UPLC, and proliferation and apoptosis were examined using RT-PCR, immunohistochemistry, and Cell Titer 96® Aqueous One Solution Cell Proliferation assay.

Results

Mice on the MR diet had reduced body weight and decreased adiposity. They also had smaller tumors when compared to the mice bearing tumors on the CF diet. Plasma concentrations of the sulfur amino acids (methionine, cysteine, and taurine) were reduced, whereas ornithine, serine, and glutamate acid were increased in mice on the MR diet. MR mice exhibited decreased proliferation and increased apoptosis in cells that comprise the mammary glands and tumors of mice. Elevated expression of P21 occurred in both MCF10AT1-derived tumor tissue and endogenously in mammary gland tissue of MR mice. Breast cancer cell lines MCF10A and MDA-MB-231 grown in methionine-restricted cysteine-depleted media for 24 h also up-regulated P21 and P27 gene expression, and MDA-MB-231 cells had decreased proliferation.

Conclusion

MR hinders cancer progression by increasing cell cycle inhibitors that halt cell cycle progression. The application of MR in a clinical setting may provide a delay in the progression of cancer, which would provide more time for conventional cancer therapies to be effective.

Electronic supplementary material

The online version of this article (doi:10.1186/s12885-016-2367-1) contains supplementary material, which is available to authorized users.

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Sinnett T, Sinha I, Bhattacharya R. Use of blocking guidewires to ensure accurate placement of femoral nails. Ann R Coll Surg Engl 2016;98:436-7. [PMID: 27055404 DOI: 10.1308/rcsann.2016.0116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open

Alla SK, Verma AD, Kumar V, Mandal RK, Sinha I, Prasad NK. Solvothermal synthesis of CuO–MgO nanocomposite particles and their catalytic applications. RSC Adv 2016. [DOI: 10.1039/c6ra03762c] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open

Verma AD, Mandal RK, Sinha I. Glycerol as green hydrogen source for catalytic reduction over anisotropic silver nanoparticles. RSC Adv 2016. [DOI: 10.1039/c6ra23676f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open

Verma AD, Mandal RK, Sinha I. Kinetics of p-Nitrophenol Reduction Catalyzed by PVP Stabilized Copper Nanoparticles. Catal Letters 2015. [DOI: 10.1007/s10562-015-1605-5] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]

Zhu J, Zhao C, Zhuang T, Jonsson P, Sinha I, Williams C, Strömblad S, Dahlman-Wright K. RING finger protein 31 promotes p53 degradation in breast cancer cells. Oncogene 2015;35:1955-64. [PMID: 26148235 PMCID: PMC4833873 DOI: 10.1038/onc.2015.260] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Revised: 05/29/2015] [Accepted: 06/05/2015] [Indexed: 12/31/2022]

Kirchner H, Sinha I, Naslund E, Zierath J. Altered DNA methylation of glycolytic and lipogenic genes in liver of obese and type 2 diabetic patients. Exp Clin Endocrinol Diabetes 2015. [DOI: 10.1055/s-0035-1547613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]

Sahariah B, Sinha I, Sharma P, Goswami L, Bhattacharyya P, Gogoi N, Bhattacharya SS. Efficacy of bioconversion of paper mill bamboo sludge and lime waste by composting and vermiconversion technologies. Chemosphere 2014;109:77-83. [PMID: 24873710 DOI: 10.1016/j.chemosphere.2014.02.063] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Revised: 02/25/2014] [Accepted: 02/28/2014] [Indexed: 06/03/2023]

Singh M, Sinha I, Singh A, Mandal R. LSPR and SAXS studies of starch stabilized Ag–Cu alloy nanoparticles. Colloids Surf A Physicochem Eng Asp 2011. [DOI: 10.1016/j.colsurfa.2011.05.037] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]

Singh M, Sinha I, Premkumar M, Singh A, Mandal R. Structural and surface plasmon behavior of Cu nanoparticles using different stabilizers. Colloids Surf A Physicochem Eng Asp 2010. [DOI: 10.1016/j.colsurfa.2010.01.069] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]

Sinha I, Smith ML, Safranek P, Dehn T, Booth M. Laparoscopic subtotal cholecystectomy without cystic duct ligation. Br J Surg 2007;94:1527-9. [PMID: 17701938 DOI: 10.1002/bjs.5889] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]

Sinha I, Barr L, Lee M. The dying art of plastering: a survey of orthopaedic trainees' plastering experience. ACTA ACUST UNITED AC 2006. [DOI: 10.1308/147363506x124134] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]

Sinha I, Galland RB. Audit of venous thromboembolic prophylaxis in emergency general surgical admissions. Phlebology 2006. [DOI: 10.1258/026835506777304700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]

Abstract Objective: The aim was to audit venous thromboembolic disease (VTE) prophylaxis in emergency surgical admissions and, given the reducing number of available surgical beds, to compare protocol violation rates between surgical and outlying wards. Method: Study 1: Prospective data collected on VTE prophylaxis in emergency surgical patients over a two-week period during or after the post-take ward round. Provisional diagnoses were recorded and drug charts were reviewed looking for prescription of standard unfractionated heparin 5000 IU and/or thromboembolic deterrent stockings. Following presentation at the governance meeting, departmental protocols were circulated to the emergency surgical unit and outlying wards that received emergency surgical patients. Study 2: Carried out two months later. Data on VTE prophylaxis collected over a two-week period in emergency surgical admissions in the same manner as study 1. Results: Study 1: A total of 70 patients were studied, 42 of which were women. The median age of the group was 47 years (range 19–90). There were 36 patients (51.2%) who violated VTE prophylaxis protocol. Of the 60 patients admitted to surgical wards, 29 violated VTE protocol (48.3%). Of the 10 patients admitted to outlying wards, seven violated VTE protocol (70%). This difference was not statistically significant. Study 2: A total of 70 patients were studied, 40 of which were women. The median age was 46 years (range 17–101). Eleven patients (15.7%) violated VTE prophylaxis recommendations. This improvement was statistically significant, P<0.0001. Some 56 patients were admitted to general surgical wards; nine violated VTE protocol (16.1%). In the fourteen patients admitted to outlying wards, there were two protocol violations (14.3%). This difference was not statistically significant. Conclusions: VTE is a potentially fatal complication of hospital admission. This audit highlighted that VTE prophylaxis rates in our emergency admissions were unacceptable at 51.2%, but were improved through audit and clinical governance. No significant difference in protocol violation was found between surgical and outlying wards. In the absence of national guidelines, VTE prophylaxis is the responsibility of individual general surgical departments and requires a documented, circulated departmental protocol, education of staff and regular audit to ensure appropriate compliance. Collapse

Anand SS, Handa RK, Singh J, Sinha I. Hepato-biliary Scintigraphy in diagnosis of Biliary Atresia. Med J Armed Forces India 2006;62:20-1. [PMID: 27407836 PMCID: PMC4923311 DOI: 10.1016/s0377-1237(06)80146-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2003] [Accepted: 07/11/2005] [Indexed: 11/30/2022] Open

Sinha I, Hannawa K, Eliason J, Ailawadi G, Ford J, Roelofs K, Stanley J, Upchurch G. The no donor DETA-NONOate decreases MMP-9 expression and activity in abdominal aortic explants. J Surg Res 2003. [DOI: 10.1016/j.jss.2003.08.203] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]

Virdi JS, Sinha I, Rajendran P, Singh I. Arsenite-induced multiple antibiotic resistance phenotype in environmental isolates of Yersinia enterocolitica. Curr Microbiol 2001;43:144-6. [PMID: 11391480 DOI: 10.1007/s002840010277] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2000] [Accepted: 01/26/2001] [Indexed: 10/26/2022]

Barrass F, Miah R, Ramsey C, Sinha I. Motor vehicle traffic exposure and allergic sensitization. Epidemiology 2001;12:137-8. [PMID: 11138813 DOI: 10.1097/00001648-200101000-00028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]

Bansal N, Sinha I, Virdi JS. Virulence plasmid (pYV)-associated susceptibility of Yersinia enterocolitica to chlorine and heavy metals. J Appl Microbiol 2000;89:663-7. [PMID: 11054171 DOI: 10.1046/j.1365-2672.2000.01164.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]

Sinha I, Virdi JS. Differentiation of non-pathogenic (biotype 1A) Yersinia enterocolitica from pathogenic bioserotypes by sodium acetate utilisation. J Med Microbiol 2000;49:674. [PMID: 10882094 DOI: 10.1099/0022-1317-49-7-674] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open

Bansal N, Sinha I, Virdi JS. Arsenic and cadmium resistance in environmental isolates of Yersinia enterocolitica and Yersinia intermedia. Can J Microbiol 2000;46:481-4. [PMID: 10872084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]

Schroers R, Sinha I, Segall H, Schmidt-Wolf IG, Rooney CM, Brenner MK, Sutton RE, Chen SY. Transduction of human PBMC-derived dendritic cells and macrophages by an HIV-1-based lentiviral vector system. Mol Ther 2000;1:171-9. [PMID: 10933928 DOI: 10.1006/mthe.2000.0027] [Citation(s) in RCA: 101] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open

Adams LB, Sinha I, Franzblau SG, Krahenbuhl JL, Mehta RT. Effective treatment of acute and chronic murine tuberculosis with liposome-encapsulated clofazimine. Antimicrob Agents Chemother 1999;43:1638-43. [PMID: 10390215 PMCID: PMC89336 DOI: 10.1128/aac.43.7.1638] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open

Choudhury BA, Liang JC, Thomas EK, Flores-Romo L, Xie QS, Agusala K, Sutaria S, Sinha I, Champlin RE, Claxton DF. Dendritic cells derived in vitro from acute myelogenous leukemia cells stimulate autologous, antileukemic T-cell responses. Blood 1999;93:780-6. [PMID: 9920826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023] Open

Bhasin S, Ma K, Sinha I, Limbo M, Taylor WE, Salehian B. The genetic basis of male infertility. Endocrinol Metab Clin North Am 1998;27:783-805, viii. [PMID: 9922908 DOI: 10.1016/s0889-8529(05)70041-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]

Das SK, Sinha I, Kundu TN, Sanyal K, Santosh V, Shankar SK. Two cases of neurosarcoidosis presenting as peripheral neuropathy and stroke in young. J Assoc Physicians India 1998;46:479-81. [PMID: 11273297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]

Chowdhury A, Chakravorty S, Sinha I, Chowdhury S. Cirrhosis of the liver presenting with galactorrhea. J Clin Gastroenterol 1997;25:716-7. [PMID: 9451707 DOI: 10.1097/00004836-199712000-00046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]

Kansal RG, Gomez-Flores R, Sinha I, Mehta RT. Therapeutic efficacy of liposomal clofazimine against Mycobacterium avium complex in mice depends on size of initial inoculum and duration of infection. Antimicrob Agents Chemother 1997;41:17-23. [PMID: 8980748 PMCID: PMC163653 DOI: 10.1128/aac.41.1.17] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open

Sinha I, Upadhyay RS. Fungitoxicity of some pesticides against Fusarium udum, the wilt causing organism of pigeon-pea. Hindustan Antibiot Bull 1990;32:36-8. [PMID: 2095363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]