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Hu Y, Han C, Huo X, Cao X, Chen Y, Cao Z, Xu Y, Tao L, Wu Z. Flexible Sensor for Real-Time Monitoring of Motion Artifacts in Magnetic Resonance Imaging. ACS Sens 2024; 9:2614-2621. [PMID: 38752282 DOI: 10.1021/acssensors.4c00319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Abstract
In recent years, magnetic resonance imaging has been widely used in the medical field. During the scan, if the human body moves, then there will be motion artifacts on the scan image, which will interfere with the diagnosis and only be found after the end of the scan sequence, resulting in a waste of manpower and resources. However, there is a lack of technology that halts scanning once motion artifacts arise. Here, we designed a real-time monitoring sensor (RMS) to dynamically perceive the movement of the human body and to pause in time when the movement exceeds a certain amplitude. The sensor has an array structure that can accurately sense the position of the human body in real time. The selection of the RMS ensures that there is no additional interference with the scanning results. Based on this design, the RMS can achieve the monitoring function of motion artifact generation.
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Affiliation(s)
- Yiran Hu
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing101400, China
- College of Nanoscience and Technology, University of Chinese Academy of Science, Beijing100049, China
| | - Chengcheng Han
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing101400, China
- College of Nanoscience and Technology, University of Chinese Academy of Science, Beijing100049, China
| | - Xiaoqing Huo
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing101400, China
- College of Nanoscience and Technology, University of Chinese Academy of Science, Beijing100049, China
| | - Xiaole Cao
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing101400, China
- College of Nanoscience and Technology, University of Chinese Academy of Science, Beijing100049, China
| | - Yongyang Chen
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing101400, China
- Geological Brigade 105, Bureau of Geology and Mineral Exploration and Development of Guizhou Province, Guiyang550018, China
| | - Zhi Cao
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing101400, China
- College of Nanoscience and Technology, University of Chinese Academy of Science, Beijing100049, China
| | - Yong Xu
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing400016, China
| | - Li Tao
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing400016, China
| | - Zhiyi Wu
- Beijing Institute of Nanoenergy and Nanosystems, Chinese Academy of Sciences, Beijing101400, China
- College of Nanoscience and Technology, University of Chinese Academy of Science, Beijing100049, China
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Giordano N, Rosati S, Fortunato D, Knaflitz M, Balestra G. Personalized Detection of Motion Artifacts for Telemonitoring Applications. Stud Health Technol Inform 2024; 314:155-159. [PMID: 38785023 DOI: 10.3233/shti240083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Abstract
Among its main benefits, telemonitoring enables personalized management of chronic diseases by means of biomarkers extracted from signals. In these applications, a thorough quality assessment is required to ensure the reliability of the monitored parameters. Motion artifacts are a common problem in recordings with wearable devices. In this work, we propose a fully automated and personalized method to detect motion artifacts in multimodal recordings devoted to the monitoring of the Cardiac Time Intervals (CTIs). The detection of motion artifacts was carried out by using template matching with a personalized template. The method yielded a balanced accuracy of 86%. Moreover, it proved effective to decrease the variability of the estimated CTIs by at least 17%. Our preliminary results show that personalized detection of motion artifacts improves the robustness of the assessment CTIs and opens to the use in wearable systems.
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Affiliation(s)
- Noemi Giordano
- Department of Electronics and Telecommunication, Politecnico di Torino, Italy
| | - Samanta Rosati
- Department of Electronics and Telecommunication, Politecnico di Torino, Italy
| | - Daniele Fortunato
- Department of Electronics and Telecommunication, Politecnico di Torino, Italy
| | - Marco Knaflitz
- Department of Electronics and Telecommunication, Politecnico di Torino, Italy
| | - Gabriella Balestra
- Department of Electronics and Telecommunication, Politecnico di Torino, Italy
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Madesta F, Sentker T, Gauer T, Werner R. Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT images. Med Phys 2024; 51:3437-3454. [PMID: 38055336 DOI: 10.1002/mp.16851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 10/12/2023] [Accepted: 10/16/2023] [Indexed: 12/08/2023] Open
Abstract
BACKGROUND 4D CT imaging is an essential component of radiotherapy of thoracic and abdominal tumors. 4D CT images are, however, often affected by artifacts that compromise treatment planning quality and image information reliability. PURPOSE In this work, deep learning (DL)-based conditional inpainting is proposed to restore anatomically correct image information of artifact-affected areas. METHODS The restoration approach consists of a two-stage process: DL-based detection of common interpolation (INT) and double structure (DS) artifacts, followed by conditional inpainting applied to the artifact areas. In this context, conditional refers to a guidance of the inpainting process by patient-specific image data to ensure anatomically reliable results. The study is based on 65 in-house 4D CT images of lung cancer patients (48 with only slight artifacts, 17 with pronounced artifacts) and two publicly available 4D CT data sets that serve as independent external test sets. RESULTS Automated artifact detection revealed a ROC-AUC of 0.99 for INT and of 0.97 for DS artifacts (in-house data). The proposed inpainting method decreased the average root mean squared error (RMSE) by 52 % (INT) and 59 % (DS) for the in-house data. For the external test data sets, the RMSE improvement is similar (50 % and 59 %, respectively). Applied to 4D CT data with pronounced artifacts (not part of the training set), 72 % of the detectable artifacts were removed. CONCLUSIONS The results highlight the potential of DL-based inpainting for restoration of artifact-affected 4D CT data. Compared to recent 4D CT inpainting and restoration approaches, the proposed methodology illustrates the advantages of exploiting patient-specific prior image information.
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Affiliation(s)
- Frederic Madesta
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Institute for Applied Medical Informatics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Center for Biomedical Artificial Intelligence (bAIome), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Thilo Sentker
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Institute for Applied Medical Informatics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Center for Biomedical Artificial Intelligence (bAIome), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - Tobias Gauer
- Department of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
| | - René Werner
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Institute for Applied Medical Informatics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany
- Center for Biomedical Artificial Intelligence (bAIome), University Medical Center Hamburg-Eppendorf, Hamburg, Germany
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Qubala A, Shafee J, Batista V, Liermann J, Winter M, Piro D, Jäkel O. Comparative evaluation of a surface-based respiratory monitoring system against a pressure sensor for 4DCT image reconstruction in phantoms. J Appl Clin Med Phys 2024; 25:e14174. [PMID: 37815197 PMCID: PMC10860430 DOI: 10.1002/acm2.14174] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2023] [Revised: 09/21/2023] [Accepted: 09/26/2023] [Indexed: 10/11/2023] Open
Abstract
Four-dimensional computed tomography (4DCT), which relies on breathing-induced motion, requires realistic surrogate information of breathing variations to reconstruct the tumor trajectory and motion variability of normal tissues accurately. Therefore, the SimRT surface-guided respiratory monitoring system has been installed on a Siemens CT scanner. This work evaluated the temporal and spatial accuracy of SimRT versus our commonly used pressure sensor, AZ-733 V. A dynamic thorax phantom was used to reproduce regular and irregular breathing patterns acquired by SimRT and Anzai. Various parameters of the recorded breathing patterns, including mean absolute deviations (MAD), Pearson correlations (PC), and tagging precision, were investigated and compared to ground-truth. Furthermore, 4DCT reconstructions were analyzed to assess the volume discrepancy, shape deformation and tumor trajectory. Compared to the ground-truth, SimRT more precisely reproduced the breathing patterns with a MAD range of 0.37 ± 0.27 and 0.92 ± 1.02 mm versus Anzai with 1.75 ± 1.54 and 5.85 ± 3.61 mm for regular and irregular breathing patterns, respectively. Additionally, SimRT provided a more robust PC of 0.994 ± 0.009 and 0.936 ± 0.062 for all investigated breathing patterns. Further, the peak and valley recognition were found to be more accurate and stable using SimRT. The comparison of tumor trajectories revealed discrepancies up to 7.2 and 2.3 mm for Anzai and SimRT, respectively. Moreover, volume discrepancies up to 1.71 ± 1.62% and 1.24 ± 2.02% were found for both Anzai and SimRT, respectively. SimRT was validated across various breathing patterns and showed a more precise and stable breathing tracking, (i) independent of the amplitude and period, (ii) and without placing any physical devices on the patient's body. These findings resulted in a more accurate temporal and spatial accuracy, thus leading to a more realistic 4DCT reconstruction and breathing-adapted treatment planning.
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Affiliation(s)
- Abdallah Qubala
- Heidelberg Ion Beam Therapy Center (HIT)HeidelbergGermany
- Faculty of MedicineUniversity of HeidelbergHeidelbergGermany
- National Center for Radiation Research in Oncology (NCRO)Heidelberg Institute of Radiation Oncology (HIRO)HeidelbergGermany
| | - Jehad Shafee
- Heidelberg Ion Beam Therapy Center (HIT)HeidelbergGermany
- Saarland University of Applied SciencesSaarbrueckenGermany
| | - Vania Batista
- National Center for Radiation Research in Oncology (NCRO)Heidelberg Institute of Radiation Oncology (HIRO)HeidelbergGermany
- Department of Radiation OncologyHeidelberg University HospitalHeidelbergGermany
| | - Jakob Liermann
- Heidelberg Ion Beam Therapy Center (HIT)HeidelbergGermany
- National Center for Radiation Research in Oncology (NCRO)Heidelberg Institute of Radiation Oncology (HIRO)HeidelbergGermany
- Department of Radiation OncologyHeidelberg University HospitalHeidelbergGermany
- National Center for Tumor Diseases (NCT)HeidelbergGermany
| | - Marcus Winter
- Heidelberg Ion Beam Therapy Center (HIT)HeidelbergGermany
- National Center for Radiation Research in Oncology (NCRO)Heidelberg Institute of Radiation Oncology (HIRO)HeidelbergGermany
| | - Daniel Piro
- Heidelberg Ion Beam Therapy Center (HIT)HeidelbergGermany
- Saarland University of Applied SciencesSaarbrueckenGermany
| | - Oliver Jäkel
- Heidelberg Ion Beam Therapy Center (HIT)HeidelbergGermany
- National Center for Radiation Research in Oncology (NCRO)Heidelberg Institute of Radiation Oncology (HIRO)HeidelbergGermany
- National Center for Tumor Diseases (NCT)HeidelbergGermany
- Department of Medical Physics in Radiation OncologyGerman Cancer Research Center (DKFZ)HeidelbergGermany
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Vraka A, Zangróniz R, Quesada A, Hornero F, Alcaraz R, Rieta JJ. A Novel Signal Restoration Method of Noisy Photoplethysmograms for Uninterrupted Health Monitoring. Sensors (Basel) 2023; 24:141. [PMID: 38203003 PMCID: PMC10781253 DOI: 10.3390/s24010141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2023] [Revised: 12/17/2023] [Accepted: 12/18/2023] [Indexed: 01/12/2024]
Abstract
Health-tracking from photoplethysmography (PPG) signals is significantly hindered by motion artifacts (MAs). Although many algorithms exist to detect MAs, the corrupted signal often remains unexploited. This work introduces a novel method able to reconstruct noisy PPGs and facilitate uninterrupted health monitoring. The algorithm starts with spectral-based MA detection, followed by signal reconstruction by using the morphological and heart-rate variability information from the clean segments adjacent to noise. The algorithm was tested on (a) 30 noisy PPGs of a maximum 20 s noise duration and (b) 28 originally clean PPGs, after noise addition (2-120 s) (1) with and (2) without cancellation of the corresponding clean segment. Sampling frequency was 250 Hz after resampling. Noise detection was evaluated by means of accuracy, sensitivity, and specificity. For the evaluation of signal reconstruction, the heart-rate (HR) was compared via Pearson correlation (PC) and absolute error (a) between ECGs and reconstructed PPGs and (b) between original and reconstructed PPGs. Bland-Altman (BA) analysis for the differences in HR estimation on original and reconstructed segments of (b) was also performed. Noise detection accuracy was 90.91% for (a) and 99.38-100% for (b). For the PPG reconstruction, HR showed 99.31% correlation in (a) and >90% for all noise lengths in (b). Mean absolute error was 1.59 bpm for (a) and 1.26-1.82 bpm for (b). BA analysis indicated that, in most cases, 90% or more of the recordings fall within the confidence interval, regardless of the noise length. Optimal performance is achieved even for signals of noise up to 2 min, allowing for the utilization and further analysis of recordings that would otherwise be discarded. Thereby, the algorithm can be implemented in monitoring devices, assisting in uninterrupted health-tracking.
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Affiliation(s)
- Aikaterini Vraka
- Biosignals and Minimally Invasive Technologies (BioMIT.org), Electronic Engineering Department, Universitat Politecnica de Valencia, 46022 Valencia, Spain;
| | - Roberto Zangróniz
- Research Group in Electronic, Biomedical and Telecommunication Engineering, University of Castilla-La Mancha, 16071 Cuenca, Spain; (R.Z.); (R.A.)
| | - Aurelio Quesada
- Arrhythmia Unit, Cardiology Department, General University Hospital Consortium of Valencia, 46014 Valencia, Spain;
| | - Fernando Hornero
- Cardiovascular Surgery Department, Hospital Clínico Universitario de Valencia, 46010 Valencia, Spain;
| | - Raúl Alcaraz
- Research Group in Electronic, Biomedical and Telecommunication Engineering, University of Castilla-La Mancha, 16071 Cuenca, Spain; (R.Z.); (R.A.)
| | - José J. Rieta
- Biosignals and Minimally Invasive Technologies (BioMIT.org), Electronic Engineering Department, Universitat Politecnica de Valencia, 46022 Valencia, Spain;
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Zhao Y, Luo H, Chen J, Loureiro R, Yang S, Zhao H. Learning based motion artifacts processing in fNIRS: a mini review. Front Neurosci 2023; 17:1280590. [PMID: 38033535 PMCID: PMC10683641 DOI: 10.3389/fnins.2023.1280590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Accepted: 10/11/2023] [Indexed: 12/02/2023] Open
Abstract
This paper provides a concise review of learning-based motion artifacts (MA) processing methods in functional near-infrared spectroscopy (fNIRS), highlighting the challenges of maintaining optimal contact during subject movement, which can lead to MA and compromise data integrity. Traditional strategies often result in reduced reliability of the hemodynamic response and statistical power. Recognizing the limited number of studies focusing on learning-based MA removal, we examine 315 studies, identifying seven pertinent to our focus area. We discuss the current landscape of learning-based MA correction methods and highlight research gaps. Noting the absence of standard evaluation metrics for quality assessment of MA correction, we suggest a novel framework, integrating signal and model quality considerations and employing metrics like ΔSignal-to-Noise Ratio (ΔSNR), confusion matrix, and Mean Squared Error. This work aims to facilitate the application of learning-based methodologies to fNIRS and improve the accuracy and reliability of neurovascular studies.
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Affiliation(s)
- Yunyi Zhao
- HUB of Intelligent Neuro-Engineering, CREATe, IOMS, Division of Surgery and Interventional Science (DSIS), University College London, Stanmore, United Kingdom
| | - Haiming Luo
- HUB of Intelligent Neuro-Engineering, CREATe, IOMS, Division of Surgery and Interventional Science (DSIS), University College London, Stanmore, United Kingdom
| | - Jianan Chen
- HUB of Intelligent Neuro-Engineering, CREATe, IOMS, Division of Surgery and Interventional Science (DSIS), University College London, Stanmore, United Kingdom
| | - Rui Loureiro
- HUB of Intelligent Neuro-Engineering, CREATe, IOMS, Division of Surgery and Interventional Science (DSIS), University College London, Stanmore, United Kingdom
| | - Shufan Yang
- School of Computing, Engineering and Built Environment, Edinburgh Napier University, Edinburgh, United Kingdom
| | - Hubin Zhao
- HUB of Intelligent Neuro-Engineering, CREATe, IOMS, Division of Surgery and Interventional Science (DSIS), University College London, Stanmore, United Kingdom
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Li B, Li N, Wang Z, Balan R, Ernst T. Simultaneous multislice EPI prospective motion correction by real-time receiver phase correction and coil sensitivity map interpolation. Magn Reson Med 2023; 90:1932-1948. [PMID: 37448116 PMCID: PMC10795703 DOI: 10.1002/mrm.29789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Revised: 06/13/2023] [Accepted: 06/16/2023] [Indexed: 07/15/2023]
Abstract
PURPOSE To improve the image reconstruction for prospective motion correction (PMC) of simultaneous multislice (SMS) EPI of the brain, an update of receiver phase and resampling of coil sensitivities are proposed and evaluated. METHODS A camera-based system was used to track head motion (3 translations and 3 rotations) and dynamically update the scan position and orientation. We derived the change in receiver phase associated with a shifted field of view (FOV) and applied it in real-time to each k-space line of the EPI readout trains. Second, for the SMS reconstruction, we adapted resampled coil sensitivity profiles reflecting the movement of slices. Single-shot gradient-echo SMS-EPI scans were performed in phantoms and human subjects for validation. RESULTS Brain SMS-EPI scans in the presence of motion with PMC and no phase correction for scan plane shift showed noticeable artifacts. These artifacts were visually and quantitatively attenuated when corrections were enabled. Correcting misaligned coil sensitivity maps improved the temporal SNR (tSNR) of time series by 24% (p = 0.0007) for scans with large movements (up to ˜35 mm and 30°). Correcting the receiver phase improved the tSNR of a scan with minimal head movement by 50% from 50 to 75 for a United Kingdom biobank protocol. CONCLUSION Reconstruction-induced motion artifacts in single-shot SMS-EPI scans acquired with PMC can be removed by dynamically adjusting the receiver phase of each line across EPI readout trains and updating coil sensitivity profiles during reconstruction. The method may be a valuable tool for SMS-EPI scans in the presence of subject motion.
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Affiliation(s)
- Bo Li
- Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland, Baltimore, MD, United States
| | - Ningzhi Li
- U.S. Food Drug Administration, Silver Spring, MD, United States
| | - Ze Wang
- Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland, Baltimore, MD, United States
| | - Radu Balan
- Department of Mathematics, University of Maryland, College Park, MD, United States
| | - Thomas Ernst
- Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland, Baltimore, MD, United States
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Weaver JM, DiPiero M, Rodrigues PG, Cordash H, Davidson RJ, Planalp EM, Dean DC. Automated motion artifact detection in early pediatric diffusion MRI using a convolutional neural network. Imaging Neurosci (Camb) 2023; 1:10.1162/imag_a_00023. [PMID: 38344118 PMCID: PMC10854394 DOI: 10.1162/imag_a_00023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/15/2024]
Abstract
Diffusion MRI (dMRI) is a widely used method to investigate the microstructure of the brain. Quality control (QC) of dMRI data is an important processing step that is performed prior to analysis using models such as diffusion tensor imaging (DTI) or neurite orientation dispersion and density imaging (NODDI). When processing dMRI data from infants and young children, where intra-scan motion is common, the identification and removal of motion artifacts is of the utmost importance. Manual QC of dMRI data is (1) time-consuming due to the large number of diffusion directions, (2) expensive, and (3) prone to subjective errors and observer variability. Prior techniques for automated dMRI QC have mostly been limited to adults or school-age children. Here, we propose a deep learning-based motion artifact detection tool for dMRI data acquired from infants and toddlers. The proposed framework uses a simple three-dimensional convolutional neural network (3DCNN) trained and tested on an early pediatric dataset of 2,276 dMRI volumes from 121 exams acquired at 1 month and 24 months of age. An average classification accuracy of 95% was achieved following four-fold cross-validation. A second dataset with different acquisition parameters and ages ranging from 2-36 months (consisting of 2,349 dMRI volumes from 26 exams) was used to test network generalizability, achieving 98% classification accuracy. Finally, to demonstrate the importance of motion artifact volume removal in a dMRI processing pipeline, the dMRI data were fit to the DTI and NODDI models and the parameter maps were compared with and without motion artifact removal.
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Affiliation(s)
- Jayse Merle Weaver
- Department of Medical Physics, University of Wisconsin–Madison, Madison, WI, United States
- Waisman Center, University of Wisconsin–Madison, Madison, WI, United States
| | - Marissa DiPiero
- Waisman Center, University of Wisconsin–Madison, Madison, WI, United States
- Neuroscience Training Program, University of Wisconsin–Madison, Madison, WI, United States
| | | | - Hassan Cordash
- Waisman Center, University of Wisconsin–Madison, Madison, WI, United States
| | - Richard J. Davidson
- Waisman Center, University of Wisconsin–Madison, Madison, WI, United States
- Department of Psychology, University of Wisconsin–Madison, Madison, WI, United States
- Center for Healthy Minds, University of Wisconsin–Madison, Madison WI, United States
- Department of Psychiatry, University of Wisconsin–Madison, Madison, WI, United States
| | - Elizabeth M. Planalp
- Waisman Center, University of Wisconsin–Madison, Madison, WI, United States
- Department of Medicine, University of Wisconsin–Madison, Madison, WI, United States
| | - Douglas C. Dean
- Department of Medical Physics, University of Wisconsin–Madison, Madison, WI, United States
- Waisman Center, University of Wisconsin–Madison, Madison, WI, United States
- Department of Pediatrics, University of Wisconsin–Madison, Madison, WI, United States
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Fahrni G, Gullo G, Touray A, Fournier S, Jouannic AM, Lu H, Racine D, Muller O, Pozzessere C, Qanadli SD, Rotzinger DC. Investigating the Influence of High-Speed Gantry Rotation in Cardiac CT on Motion Artifacts in Aortic Stenosis Patients Not Premedicated with β-Blockers: The FAST-CCT Randomized Trial Protocol. J Cardiovasc Dev Dis 2023; 10:424. [PMID: 37887871 PMCID: PMC10607475 DOI: 10.3390/jcdd10100424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Revised: 09/20/2023] [Accepted: 10/10/2023] [Indexed: 10/28/2023] Open
Abstract
BACKGROUND Coronary CT angiography (CCTA) is increasingly used as a non-invasive tool to assess coronary artery disease (CAD). However, CCTA is subject to motion artifacts, potentially limiting its clinical utility. Despite faster (0.35 and 0.28 s/rot) gantry rotation times, low (60-65 bpm) heartbeat is recommended, and the use of β-blockers is often needed. Technological advancements have resulted in the development of faster rotation speeds (0.23 s/rot). However, their added value in patients not premedicated with β-blockers remains unclear. This prospective single-center, two-arm, randomized, controlled trial aims to assess the influence of fast rotation on coronary motion artifacts, diagnostic accuracy of CCTA for CAD, and patient safety. METHODS We will randomize a total of 142 patients aged ≥ 50 scheduled for an aortic stenosis work-up to receive CCTA with either a fast (0.23) or standard (0.28 s/rot) gantry speed. PRIMARY OUTCOME rate of CCTAs with coronary motion artifacts hindering interpretation. SECONDARY OUTCOMES assessable coronary segments rate, diagnostic accuracy against invasive coronary angiography (ICA), motion artifact magnitude per segment, contrast-to-noise ratio (CNR), and patient ionizing radiation dose. The local ethics committee has approved the protocol. Potential significance: FAST-CCT may improve motion artifact reduction and diagnosis quality, thus eliminating the need for rate control and β-blocker administration. CLINICALTRIALS gov identifier: NCT05709652.
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Affiliation(s)
- Guillaume Fahrni
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (G.G.); (A.T.); (A.-M.J.); (C.P.)
| | - Giuseppe Gullo
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (G.G.); (A.T.); (A.-M.J.); (C.P.)
| | - Aisha Touray
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (G.G.); (A.T.); (A.-M.J.); (C.P.)
| | - Stéphane Fournier
- Department of Cardiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (S.F.); (H.L.); (O.M.)
| | - Anne-Marie Jouannic
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (G.G.); (A.T.); (A.-M.J.); (C.P.)
| | - Henri Lu
- Department of Cardiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (S.F.); (H.L.); (O.M.)
| | - Damien Racine
- Institute of Radiation Physics, Lausanne University Hospital and University of Lausanne, Rue du Grand-Pré 1, 46, 1007 Lausanne, Switzerland;
| | - Olivier Muller
- Department of Cardiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (S.F.); (H.L.); (O.M.)
| | - Chiara Pozzessere
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (G.G.); (A.T.); (A.-M.J.); (C.P.)
| | - Salah D. Qanadli
- Riviera-Chablais Hospital, Rte du Vieux Séquoia 20, 1847 Rennaz, Switzerland;
- Faculty of Biology and Medicine (FBM), University of Lausanne, 1015 Lausanne, Switzerland
| | - David C. Rotzinger
- Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, Rue du Bugnon 46, 1011 Lausanne, Switzerland; (G.G.); (A.T.); (A.-M.J.); (C.P.)
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Downey RJ, Ferris DP. iCanClean Removes Motion, Muscle, Eye, and Line-Noise Artifacts from Phantom EEG. Sensors (Basel) 2023; 23:8214. [PMID: 37837044 PMCID: PMC10574843 DOI: 10.3390/s23198214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 09/26/2023] [Accepted: 09/27/2023] [Indexed: 10/15/2023]
Abstract
The goal of this study was to test a novel approach (iCanClean) to remove non-brain sources from scalp EEG data recorded in mobile conditions. We created an electrically conductive phantom head with 10 brain sources, 10 contaminating sources, scalp, and hair. We tested the ability of iCanClean to remove artifacts while preserving brain activity under six conditions: Brain, Brain + Eyes, Brain + Neck Muscles, Brain + Facial Muscles, Brain + Walking Motion, and Brain + All Artifacts. We compared iCanClean to three other methods: Artifact Subspace Reconstruction (ASR), Auto-CCA, and Adaptive Filtering. Before and after cleaning, we calculated a Data Quality Score (0-100%), based on the average correlation between brain sources and EEG channels. iCanClean consistently outperformed the other three methods, regardless of the type or number of artifacts present. The most striking result was for the condition with all artifacts simultaneously present. Starting from a Data Quality Score of 15.7% (before cleaning), the Brain + All Artifacts condition improved to 55.9% after iCanClean. Meanwhile, it only improved to 27.6%, 27.2%, and 32.9% after ASR, Auto-CCA, and Adaptive Filtering. For context, the Brain condition scored 57.2% without cleaning (reasonable target). We conclude that iCanClean offers the ability to clear multiple artifact sources in real time and could facilitate human mobile brain-imaging studies with EEG.
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Affiliation(s)
| | - Daniel P. Ferris
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, Gainesville, FL 32611, USA;
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11
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Amirian M, Montoya-Zegarra JA, Herzig I, Eggenberger Hotz P, Lichtensteiger L, Morf M, Züst A, Paysan P, Peterlik I, Scheib S, Füchslin RM, Stadelmann T, Schilling FP. Mitigation of motion-induced artifacts in cone beam computed tomography using deep convolutional neural networks. Med Phys 2023; 50:6228-6242. [PMID: 36995003 DOI: 10.1002/mp.16405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2022] [Revised: 02/25/2023] [Accepted: 03/19/2023] [Indexed: 03/31/2023] Open
Abstract
BACKGROUND Cone beam computed tomography (CBCT) is often employed on radiation therapy treatment devices (linear accelerators) used in image-guided radiation therapy (IGRT). For each treatment session, it is necessary to obtain the image of the day in order to accurately position the patient and to enable adaptive treatment capabilities including auto-segmentation and dose calculation. Reconstructed CBCT images often suffer from artifacts, in particular those induced by patient motion. Deep-learning based approaches promise ways to mitigate such artifacts. PURPOSE We propose a novel deep-learning based approach with the goal to reduce motion induced artifacts in CBCT images and improve image quality. It is based on supervised learning and includes neural network architectures employed as pre- and/or post-processing steps during CBCT reconstruction. METHODS Our approach is based on deep convolutional neural networks which complement the standard CBCT reconstruction, which is performed either with the analytical Feldkamp-Davis-Kress (FDK) method, or with an iterative algebraic reconstruction technique (SART-TV). The neural networks, which are based on refined U-net architectures, are trained end-to-end in a supervised learning setup. Labeled training data are obtained by means of a motion simulation, which uses the two extreme phases of 4D CT scans, their deformation vector fields, as well as time-dependent amplitude signals as input. The trained networks are validated against ground truth using quantitative metrics, as well as by using real patient CBCT scans for a qualitative evaluation by clinical experts. RESULTS The presented novel approach is able to generalize to unseen data and yields significant reductions in motion induced artifacts as well as improvements in image quality compared with existing state-of-the-art CBCT reconstruction algorithms (up to +6.3 dB and +0.19 improvements in peak signal-to-noise ratio, PSNR, and structural similarity index measure, SSIM, respectively), as evidenced by validation with an unseen test dataset, and confirmed by a clinical evaluation on real patient scans (up to 74% preference for motion artifact reduction over standard reconstruction). CONCLUSIONS For the first time, it is demonstrated, also by means of clinical evaluation, that inserting deep neural networks as pre- and post-processing plugins in the existing 3D CBCT reconstruction and trained end-to-end yield significant improvements in image quality and reduction of motion artifacts.
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Affiliation(s)
- Mohammadreza Amirian
- Centre for Artificial Intelligence CAI, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
- Institute of Neural Information Processing, Ulm University, Ulm, Germany
| | - Javier A Montoya-Zegarra
- Centre for Artificial Intelligence CAI, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
| | - Ivo Herzig
- Institute for Applied Mathematics and Physics IAMP, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
| | - Peter Eggenberger Hotz
- Institute for Applied Mathematics and Physics IAMP, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
| | - Lukas Lichtensteiger
- Institute for Applied Mathematics and Physics IAMP, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
| | - Marco Morf
- Institute for Applied Mathematics and Physics IAMP, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
| | - Alexander Züst
- Institute for Applied Mathematics and Physics IAMP, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
| | - Pascal Paysan
- Varian Medical Systems Imaging Laboratory GmbH, Baden, Switzerland
| | - Igor Peterlik
- Varian Medical Systems Imaging Laboratory GmbH, Baden, Switzerland
| | - Stefan Scheib
- Varian Medical Systems Imaging Laboratory GmbH, Baden, Switzerland
| | - Rudolf Marcel Füchslin
- Institute for Applied Mathematics and Physics IAMP, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
- European Centre for Living Technology, Venice, Italy
| | - Thilo Stadelmann
- Centre for Artificial Intelligence CAI, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
- European Centre for Living Technology, Venice, Italy
| | - Frank-Peter Schilling
- Centre for Artificial Intelligence CAI, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland
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12
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Hu G, Wang J, Deng H, Ma M, Zhong X. Dynamic 3D Measurement without Motion Artifacts Based on Feature Compensation. Sensors (Basel) 2023; 23:7147. [PMID: 37631684 PMCID: PMC10457782 DOI: 10.3390/s23167147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 08/04/2023] [Accepted: 08/09/2023] [Indexed: 08/27/2023]
Abstract
Phase-shift profilometry (PSP) holds great promise for high-precision 3D shape measurements. However, in the case of measuring moving objects, as PSP requires multiple images to calculate the phase, the movement of the object causes artifacts in the measurement, which in turn has a significant impact on the accuracy of the 3D surface measurement. Therefore, we propose a method to reduce motion artifacts using feature information in the image and simulate it using the six-step term shift method as a case study. The simulation results show that the phase of the object is greatly affected when the object is in motion and that the phase shift due to motion can be effectively reduced using this method. Finally, artifact optimization was carried out by way of specific copper tube vibration experiments at a measurement frequency of 320 Hz. The experimental results prove that the method is well implemented.
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Affiliation(s)
- Guoce Hu
- School of Instrument Science and Opto-Electronics Engineering, Hefei University of Technology, Hefei 230009, China; (G.H.); (M.M.); (X.Z.)
| | - Jun Wang
- School of Mechanical Engineering, Anhui University of Science and Technology, Huainan 232001, China;
| | - Huaxia Deng
- CAS Key Laboratory of Mechanical Behavior and Design of Materials, Department of Modern Mechanics, University of Science and Technology of China, Hefei 230027, China
| | - Mengchao Ma
- School of Instrument Science and Opto-Electronics Engineering, Hefei University of Technology, Hefei 230009, China; (G.H.); (M.M.); (X.Z.)
| | - Xiang Zhong
- School of Instrument Science and Opto-Electronics Engineering, Hefei University of Technology, Hefei 230009, China; (G.H.); (M.M.); (X.Z.)
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13
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Vicente-Samper JM, Tamantini C, Ávila-Navarro E, De La Casa-Lillo MÁ, Zollo L, Sabater-Navarro JM, Cordella F. An ML-Based Approach to Reconstruct Heart Rate from PPG in Presence of Motion Artifacts. Biosensors (Basel) 2023; 13:718. [PMID: 37504116 PMCID: PMC10377343 DOI: 10.3390/bios13070718] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 06/30/2023] [Accepted: 07/05/2023] [Indexed: 07/29/2023]
Abstract
The heart rate (HR) is a widely used clinical variable that provides important information on a physical user's state. One of the most commonly used methods for ambulatory HR monitoring is photoplethysmography (PPG). The PPG signal retrieved from wearable devices positioned on the user's wrist can be corrupted when the user is performing tasks involving the motion of the arms, wrist, and fingers. In these cases, the obtained HR is altered as well. This problem increases when trying to monitor people with autism spectrum disorder (ASD), who are very reluctant to use foreign bodies, notably hindering the adequate attachment of the device to the user. This work presents a machine learning approach to reconstruct the user's HR signal using an own monitoring wristband especially developed for people with ASD. An experiment is carried out, with users performing different daily life activities in order to build a dataset with the measured signals from the monitoring wristband. From these data, an algorithm is applied to obtain a reliable HR value when these people are performing skill improvement activities where intensive wrist movement may corrupt the PPG.
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Affiliation(s)
- José María Vicente-Samper
- Neuroengineering Biomedical Group, Institute of Bioengineering, Miguel Hernández University of Elche, 03202 Elche, Spain
| | - Christian Tamantini
- Unit of Advanced Robotics and Human-Centred Technologies, Department of Engineering, Università Campus Bio-Medico di Roma, 00128 Rome, Italy
| | - Ernesto Ávila-Navarro
- Department of Materials Science, Optics and Electronic Technology, Miguel Hernández University of Elche, 03202 Elche, Spain
| | | | - Loredana Zollo
- Unit of Advanced Robotics and Human-Centred Technologies, Department of Engineering, Università Campus Bio-Medico di Roma, 00128 Rome, Italy
| | - José María Sabater-Navarro
- Neuroengineering Biomedical Group, Institute of Bioengineering, Miguel Hernández University of Elche, 03202 Elche, Spain
| | - Francesca Cordella
- Unit of Advanced Robotics and Human-Centred Technologies, Department of Engineering, Università Campus Bio-Medico di Roma, 00128 Rome, Italy
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14
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Chizari A, Tsong W, Knop T, Steenbergen W. Prediction of motion artifacts caused by translation in handheld laser speckle contrast imaging. J Biomed Opt 2023; 28:046005. [PMID: 37082096 PMCID: PMC10112282 DOI: 10.1117/1.jbo.28.4.046005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 03/24/2023] [Indexed: 05/03/2023]
Abstract
Significance In handheld laser speckle contrast imaging (LSCI), motion artifacts (MA) are inevitable. Suppression of MA leads to a valid and objective assessment of tissue perfusion in a wide range of medical applications including dermatology and burns. Our study shines light on the sources of these artifacts, which have not yet been explored. We propose a model based on optical Doppler effect to predict speckle contrast drop as an indication of MA. Aim We aim to theoretically model MA when an LSCI system measuring on static scattering media is subject to translational displacements. We validate the model using both simulation and experiments. This is the crucial first step toward creating robustness against MA. Approach Our model calculates optical Doppler shifts in order to predict intensity correlation function and contrast of the time-integrated intensity as functions of applied speed based on illumination and detection wavevectors. To validate the theoretical predictions, computer simulation of the dynamic speckles has been carried out. Then experiments are performed by both high-speed and low-framerate imaging. The employed samples for the experiments are a highly scattering matte surface and a Delrin plate of finite scattering level in which volume scattering occurs. Results An agreement has been found between theoretical prediction, simulation, and experimental results of both intensity correlation functions and speckle contrast. Coefficients in the proposed model have been linked to the physical parameters according to the experimental setups. Conclusions The proposed model provides a quantitative description of the influence of the types of illumination and media in the creation of MA. The accurate prediction of MA caused by translation based on Doppler shifts makes our model suitable to study the influence of rotation. Also the model can be extended for the case of dynamic media, such as live tissue.
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Affiliation(s)
- Ata Chizari
- University of Twente, Technical Medical Centre, Faculty of Science and Technology, Biomedical Photonic Imaging Group, Enschede, The Netherlands
- Address all correspondence to Ata Chizari,
| | - Wilson Tsong
- University of Twente, Technical Medical Centre, Faculty of Science and Technology, Biomedical Photonic Imaging Group, Enschede, The Netherlands
| | - Tom Knop
- University of Twente, Technical Medical Centre, Faculty of Science and Technology, Biomedical Photonic Imaging Group, Enschede, The Netherlands
| | - Wiendelt Steenbergen
- University of Twente, Technical Medical Centre, Faculty of Science and Technology, Biomedical Photonic Imaging Group, Enschede, The Netherlands
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15
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Kappadan V, Sohi A, Parlitz U, Luther S, Uzelac I, Fenton F, Peters NS, Christoph J, Ng FS. Optical mapping of contracting hearts. J Physiol 2023; 601:1353-1370. [PMID: 36866700 PMCID: PMC10952556 DOI: 10.1113/jp283683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 02/27/2023] [Indexed: 03/04/2023] Open
Abstract
Optical mapping is a widely used tool to record and visualize the electrophysiological properties in a variety of myocardial preparations such as Langendorff-perfused isolated hearts, coronary-perfused wedge preparations, and cell culture monolayers. Motion artifact originating from the mechanical contraction of the myocardium creates a significant challenge to performing optical mapping of contracting hearts. Hence, to minimize the motion artifact, cardiac optical mapping studies are mostly performed on non-contracting hearts, where the mechanical contraction is removed using pharmacological excitation-contraction uncouplers. However, such experimental preparations eliminate the possibility of electromechanical interaction, and effects such as mechano-electric feedback cannot be studied. Recent developments in computer vision algorithms and ratiometric techniques have opened the possibility of performing optical mapping studies on isolated contracting hearts. In this review, we discuss the existing techniques and challenges of optical mapping of contracting hearts.
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Affiliation(s)
- Vineesh Kappadan
- National Heart and Lung Institute (NHLI)Imperial College LondonLondonUK
| | - Anies Sohi
- National Heart and Lung Institute (NHLI)Imperial College LondonLondonUK
| | - Ulrich Parlitz
- Biomedical Physcis GroupMax Planck Institute for Dynamics and Self‐OrganizationGöttingenGermany
| | - Stefan Luther
- Biomedical Physcis GroupMax Planck Institute for Dynamics and Self‐OrganizationGöttingenGermany
| | - Ilija Uzelac
- School of PhysicsGeorgia Institute of TechnologyAtlantaGAUSA
| | - Flavio Fenton
- School of PhysicsGeorgia Institute of TechnologyAtlantaGAUSA
| | - Nicholas S Peters
- National Heart and Lung Institute (NHLI)Imperial College LondonLondonUK
| | - Jan Christoph
- Cardiovascular Research InstituteUniversity of CaliforniaSan FranciscoCAUSA
| | - Fu Siong Ng
- National Heart and Lung Institute (NHLI)Imperial College LondonLondonUK
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16
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Benedikt S, Horling L, Stock K, Degenhart G, Pallua J, Schmidle G, Arora R. The impact of motion induced artifacts in the evaluation of HR-pQCT scans of the scaphoid bone: an assessment of inter- and intraobserver variability and quantitative parameters. Quant Imaging Med Surg 2023; 13:1336-1349. [PMID: 36915364 PMCID: PMC10006159 DOI: 10.21037/qims-22-345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2022] [Accepted: 10/11/2022] [Indexed: 12/05/2022]
Abstract
Background In-vivo high-resolution peripheral quantitative computed tomography (HR-pQCT) has high potential in scaphoid bone pathologies' scientific and clinical fields. The manufacturer's visual grading scale (VGS) classifies motion artifacts and divides scans into five quality grades ranging from grade 1 (good quality) to grade 5 (poor quality). This prospective study aimed to investigate the feasibility of the VGS and the influence of image quality on bone density and microarchitecture parameters for the scaphoid bone. Methods Within one year, twenty-two patients with scaphoid fractures received up to six scans of their fractured and contralateral wrist (each consisting of three stacks) using second-generation HR-pQCT (total 256 scans). Three experienced observers graded each stack following the visual grading system, and inter- and intraobserver variability were assessed. The contralateral uninjured scaphoids were then compared pairwise within each patient to high-quality grade 1 scans to determine the influence of image quality on density and microarchitecture parameters. Results Inter- and intraobserver variability among the three observers significantly revealed fair to moderate agreement, P<0.001 and P<0.05, respectively. Bone volume (BV) fraction tended to increase with poorer image quality but did not exceed four percent. Trabecular bone mineral density (Tb.BMD) decreased with poorer image quality but did not exceed five percent. Trabecular number and trabecular thickness significantly increased by 15.5% and 6.8% at grade five (P<0.001), respectively, and trabecular separation significantly decreased by 13.7% at grade five (P<0.001). Conclusions This study revealed a considerable influence of motion on bone morphometry parameters of the scaphoid. Therefore, high image quality must be a central point in studies focusing on the histomorphometry of small objects. The high inter- and intraobserver variability limit the VGS. Future research may focus on other grading systems or automated techniques leading to more consistent and reproducible results. Currently, the use of microarchitectural analysis should be limited to cases without motion artefacts or, at most low graded motion artefacts.
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Affiliation(s)
- Stefan Benedikt
- Department of Orthopaedics and Traumatology, Medical University Innsbruck, Innsbruck, Austria
| | - Lukas Horling
- Department of Orthopaedics and Traumatology, Medical University Innsbruck, Innsbruck, Austria
| | - Kerstin Stock
- Department of Orthopaedics and Traumatology, Medical University Innsbruck, Innsbruck, Austria
| | - Gerald Degenhart
- Department of Radiology, Medical University Innsbruck, Innsbruck, Austria
| | - Johannes Pallua
- Department of Orthopaedics and Traumatology, Medical University Innsbruck, Innsbruck, Austria
| | - Gernot Schmidle
- Department of Orthopaedics and Traumatology, Medical University Innsbruck, Innsbruck, Austria
| | - Rohit Arora
- Department of Orthopaedics and Traumatology, Medical University Innsbruck, Innsbruck, Austria
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17
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Gupta K, Colvert B, Chen Z, Contijoch F. DiFiR-CT: Distance field representation to resolve motion artifacts in computed tomography. Med Phys 2023; 50:1349-1366. [PMID: 36515381 PMCID: PMC10684274 DOI: 10.1002/mp.16157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 11/02/2022] [Accepted: 12/02/2022] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND Motion during data acquisition leads to artifacts in computed tomography (CT) reconstructions. In cases such as cardiac imaging, not only is motion unavoidable, but evaluating the motion of the object is of clinical interest. Reducing motion artifacts has typically been achieved by developing systems with faster gantry rotation or via algorithms which measure and/or estimate the displacement. However, these approaches have had limited success due to both physical constraints as well as the challenge of estimating non-rigid, temporally varying, and patient-specific motion fields. PURPOSE To develop a novel reconstruction method which generates time-resolved, artifact-free images without estimation or explicit modeling of the motion. METHODS We describe an analysis-by-synthesis approach which progressively regresses a solution consistent with the acquired sinogram. In our method, we focus on the movement of object boundaries. Not only are the boundaries the source of image artifacts, but object boundaries can simultaneously be used to represent both the object as well as its motion over time without the need for an explicit motion model. We represent the object boundaries via a signed distance function (SDF) which can be efficiently modeled using neural networks. As a result, optimization can be performed under spatial and temporal smoothness constraints without the need for explicit motion estimation. RESULTS We illustrate the utility of DiFiR-CT in three imaging scenarios with increasing motion complexity: translation of a small circle, heart-like change in an ellipse's diameter, and a complex topological deformation. Compared to filtered backprojection, DiFiR-CT provides high quality image reconstruction for all three motions without hyperparameter tuning or change to the architecture. We also evaluate DiFiR-CT's robustness to noise in the acquired sinogram and found its reconstruction to be accurate across a wide range of noise levels. Lastly, we demonstrate how the approach could be used for multi-intensity scenes and illustrate the importance of the initial segmentation providing a realistic initialization. Code and supplemental movies are available at https://kunalmgupta.github.io/projects/DiFiR-CT.html. CONCLUSIONS Projection data can be used to accurately estimate a temporally-evolving scene without the need for explicit motion estimation using a neural implicit representation and analysis-by-synthesis approach.
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Affiliation(s)
- Kunal Gupta
- Department of Computer Science Engineering, University of California San Diego, San Diego, California, USA
| | - Brendan Colvert
- Shu Chien-Gene Lay Department of Bioengineering, University of California San Diego, La Jolla, California, USA
| | - Zhennong Chen
- Shu Chien-Gene Lay Department of Bioengineering, University of California San Diego, La Jolla, California, USA
| | - Francisco Contijoch
- Shu Chien-Gene Lay Department of Bioengineering, University of California San Diego, La Jolla, California, USA
- Department of Radiology, University of California San Diego, La Jolla, California, USA
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18
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Bujnowski A, Osiński K, Przystup P, Wtorek J. Non-Contact Monitoring of ECG in the Home Environment-Selecting Optimal Electrode Configuration. Sensors (Basel) 2022; 22:9475. [PMID: 36502179 PMCID: PMC9736054 DOI: 10.3390/s22239475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 11/21/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
Abstract
Capacitive electrocardiography (cECG) is most often used in wearable or embedded measurement systems. The latter is considered in the paper. An optimal electrocardiographic lead, as an individual feature, was determined based on model studies. It was defined as the possibly highest value of the R-wave amplitude measured on the back of the examined person. The lead configuration was also analyzed in terms of minimizing its susceptibility to creating motion artifacts. It was found that the direction of the optimal lead coincides with the electrical axis of the heart. Moreover, the electrodes should be placed in the areas preserving the greatest voltage and at the same time characterized by the lowest gradient of the potential. Experimental studies were conducted using the developed measurement system on a group of 14 people. The ratio of the R-wave amplitude (as measured on the back and chest, using optimal leads) was less than 1 while the SNR reached at least 20 dB. These parameters allowed for high-quality QRS complex detection with a PPV of 97%. For the "worst" configurations of the leads, the signals measured were practically uninterpretable.
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Affiliation(s)
- Adam Bujnowski
- Biomedical Engineering Department, Faculty of Electronics Telecommunication and Informatics, Gdansk University of Technology, Narutowicza 11/12, 80-233 Gdansk, Poland
| | - Kamil Osiński
- Biomedical Engineering Department, Faculty of Electronics Telecommunication and Informatics, Gdansk University of Technology, Narutowicza 11/12, 80-233 Gdansk, Poland
| | - Piotr Przystup
- Dynamic Precision, ul. Trzy Lipy 3, 80-172 Gdansk, Poland
| | - Jerzy Wtorek
- Biomedical Engineering Department, Faculty of Electronics Telecommunication and Informatics, Gdansk University of Technology, Narutowicza 11/12, 80-233 Gdansk, Poland
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19
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Lorenz G. [Diagnostic predictive value of liver biopsy for clinical aspects]. Z Arztl Fortbild (Jena) 2022; 72:793-6. [PMID: 362741 PMCID: PMC9736764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Background The quest for improved diagnosis and treatment in home health care models has led to the development of wearable medical devices for remote vital signs monitoring. An accurate signal and a high diagnostic yield are critical for the cost-effectiveness of wearable health care monitoring systems and their widespread application in resource-constrained environments. Despite technological advances, the information acquired by these devices can be contaminated by motion artifacts (MA) leading to misdiagnosis or repeated procedures with increases in associated costs. This makes it necessary to develop methods to improve the quality of the signal acquired by these devices. Objective We aimed to present a novel method for electrocardiogram (ECG) signal denoising to reduce MA. We aimed to analyze the method’s performance and to compare its performance to that of existing approaches. Methods We present the novel Redundant denoising Independent Component Analysis method for ECG signal denoising based on the redundant and simultaneous acquisition of ECG signals and movement information, multichannel processing, and performance assessment considering the information contained in the signal waveform. The method is based on data including ECG signals from the patient’s chest and back, the acquisition of triaxial movement signals from inertial measurement units, a reference signal synthesized from an autoregressive model, and the separation of interest and noise sources through multichannel independent component analysis. Results The proposed method significantly reduced MA, showing better performance and introducing a smaller distortion in the interest signal compared with other methods. Finally, the performance of the proposed method was compared to that of wavelet shrinkage and wavelet independent component analysis through the assessment of signal-to-noise ratio, dynamic time warping, and a proposed index based on the signal waveform evaluation with an ensemble average ECG. Conclusions Our novel ECG denoising method is a contribution to converting wearable devices into medical monitoring tools that can be used to support the remote diagnosis and monitoring of cardiovascular diseases. A more accurate signal substantially improves the diagnostic yield of wearable devices. A better yield improves the devices’ cost-effectiveness and contributes to their widespread application.
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Hrinivich WT, Chernavsky NE, Morcos M, Li T, Wu P, Wong J, Siewerdsen JH. Effect of subject motion and gantry rotation speed on image quality and dose delivery in CT-guided radiotherapy. Med Phys 2022; 49:6840-6855. [PMID: 35880711 DOI: 10.1002/mp.15877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 06/22/2022] [Accepted: 07/03/2022] [Indexed: 12/13/2022] Open
Abstract
PURPOSE To investigate the effects of subject motion and gantry rotation speed on computed tomography (CT) image quality over a range of image acquisition speeds for fan-beam (FB) and cone-beam (CB) CT scanners, and quantify the geometric and dosimetric errors introduced by FB and CB sampling in the context of adaptive radiotherapy. METHODS Images of motion phantoms were acquired using four CT scanners with gantry rotation speeds of 0.5 s/rotation (denoted FB-0.5), 1.9 s/rotation (FB-1.9), 16.6 s/rotation (CB-16.6), and 60.0 s/rotation (CB-60.0). A phantom presenting various tissue densities undergoing motion with 4-s period and ranging in amplitude from ±0.5 to ±10.0 mm was used to characterize motion artifacts (streaks), motion blur (edge-spread function, ESF), and geometric inaccuracy (excursion of insert centroids and distortion of known shape). An anthropomorphic abdomen phantom undergoing ±2.5-mm motion with 4-s period was used to simulate an adaptive radiotherapy workflow, and relative geometric and dosimetric errors were compared between scanners. RESULTS At ±2.5-mm motion, phantom measurements demonstrated mean ± SD ESF widths of 0.6 ± 0.0, 1.3 ± 0.4, 2.0 ± 1.1, and 2.9 ± 2.0 mm and geometric inaccuracy (excursion) of 2.7 ± 0.4, 4.1 ± 1.2, 2.6 ± 0.7, and 2.0 ± 0.5 mm for the FB-0.5, FB-1.9, CB-16.6, and CB-60.0 scanners, respectively. The results demonstrated nonmonotonic trends with scanner speed for FB and CB geometries. Geometric and dosimetric errors in adaptive radiotherapy plans were largest for the slowest (CB-60.0) scanner and similar for the three faster systems (CB-16.6, FB-1.9, and FB-0.5). CONCLUSIONS Clinically standard CB-60.0 demonstrates strong image quality degradation in the presence of subject motion, which is mitigated through faster CBCT or FBCT. Although motion blur is minimized for FB-0.5 and FB-1.9, such systems suffer from increased geometric distortion compared to CB-16.6. Each system reflects tradeoffs in image artifacts and geometric inaccuracies that affect treatment delivery/dosimetric error and should be considered in the design of next-generation CT-guided radiotherapy systems.
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Affiliation(s)
- William T Hrinivich
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University, Baltimore, Maryland, USA
| | - Nicole E Chernavsky
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Marc Morcos
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University, Baltimore, Maryland, USA
| | - Taoran Li
- Department of Radiation Oncology, University of Pennsylvania, Philadelphia, Pennsylvania, USA
| | - Pengwei Wu
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - John Wong
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University, Baltimore, Maryland, USA
| | - Jeffrey H Siewerdsen
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA
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21
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Meng K, Xiao X, Liu Z, Shen S, Tat T, Wang Z, Lu C, Ding W, He X, Yang J, Chen J. Kirigami-Inspired Pressure Sensors for Wearable Dynamic Cardiovascular Monitoring. Adv Mater 2022; 34:e2202478. [PMID: 35767870 DOI: 10.1002/adma.202202478] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 05/29/2022] [Indexed: 06/15/2023]
Abstract
Continuously and accurately monitoring pulse-wave signals is critical to prevent and diagnose cardiovascular diseases. However, existing wearable pulse sensors are vulnerable to motion artifacts due to the lack of proper adhesion and conformal interface with human skin during body movement. Here, a highly sensitive and conformal pressure sensor inspired by the kirigami structure is developed to measure the human pulse wave on different body artery sites under various prestressing pressure conditions and even with body movement. COMSOL multiphysical field coupling simulation and experimental testing are used to verify the unique advantages of the kirigami structure. The device shows a superior sensitivity (35.2 mV Pa-1 ) and remarkable stability (>84 000 cycles). Toward practical applications, a wireless cardiovascular monitoring system is developed for wirelessly transmitting the pulse signals to a mobile phone in real-time, which successfully distinguished the pulse waveforms from different participants. The pulse waveforms measured by the kirigami inspired pressure sensor are as accurate as those provided by the commercial medical device. Given the compelling features, the sensor provides an ascendant way for wearable electronics to overcome motion artifacts when monitoring pulse signals, thus representing a solid advancement toward personalized healthcare in the era of the Internet of Things.
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Affiliation(s)
- Keyu Meng
- School of Electronic and Information Engineering, Jilin Provincial Key Laboratory of Human Health Status Identification and Function Enhancement, Changchun University, Changchun, 130022, China
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Xiao Xiao
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Zixiao Liu
- Department of Materials Science and Engineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Sophia Shen
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Trinny Tat
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Zihan Wang
- Tsinghua-Berkeley Shenzhen Institute and Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, P. R. China
| | - Chengyue Lu
- Tsinghua-Berkeley Shenzhen Institute and Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, P. R. China
| | - Wenbo Ding
- Tsinghua-Berkeley Shenzhen Institute and Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, P. R. China
| | - Ximin He
- Department of Materials Science and Engineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Jun Yang
- Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, 400714, P. R. China
| | - Jun Chen
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
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22
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Kazemi K, Laitala J, Azimi I, Liljeberg P, Rahmani AM. Robust PPG Peak Detection Using Dilated Convolutional Neural Networks. Sensors (Basel) 2022; 22:6054. [PMID: 36015816 PMCID: PMC9414657 DOI: 10.3390/s22166054] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 08/10/2022] [Accepted: 08/11/2022] [Indexed: 06/15/2023]
Abstract
Accurate peak determination from noise-corrupted photoplethysmogram (PPG) signal is the basis for further analysis of physiological quantities such as heart rate. Conventional methods are designed for noise-free PPG signals and are insufficient for PPG signals with low signal-to-noise ratio (SNR). This paper focuses on enhancing PPG noise-resiliency and proposes a robust peak detection algorithm for PPG signals distorted due to noise and motion artifact. Our algorithm is based on convolutional neural networks (CNNs) with dilated convolutions. We train and evaluate the proposed method using a dataset collected via smartwatches under free-living conditions in a home-based health monitoring application. A data generator is also developed to produce noisy PPG data used for model training and evaluation. The method performance is compared against other state-of-the-art methods and is tested with SNRs ranging from 0 to 45 dB. Our method outperforms the existing adaptive threshold, transform-based, and machine learning methods. The proposed method shows overall precision, recall, and F1-score of 82%, 80%, and 81% in all the SNR ranges. In contrast, the best results obtained by the existing methods are 78%, 80%, and 79%. The proposed method proves to be accurate for detecting PPG peaks even in the presence of noise.
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Affiliation(s)
- Kianoosh Kazemi
- Department of Computing, Faculty of Technology, University of Turku, 20014 Turku, Finland
| | - Juho Laitala
- Department of Computing, Faculty of Technology, University of Turku, 20014 Turku, Finland
| | - Iman Azimi
- Department of Computing, Faculty of Technology, University of Turku, 20014 Turku, Finland
- Department of Computer Science, University of California, Irvine, CA 92697-3435, USA
- Institute for Future Health, University of California, Irvine, CA 92697, USA
| | - Pasi Liljeberg
- Department of Computing, Faculty of Technology, University of Turku, 20014 Turku, Finland
| | - Amir M. Rahmani
- Department of Computer Science, University of California, Irvine, CA 92697-3435, USA
- Institute for Future Health, University of California, Irvine, CA 92697, USA
- School of Nursing, University of California, Irvine, CA 92697, USA
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23
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Abstract
Beyond its use in a clinical environment, photoplethysmogram (PPG) is increasingly used for measuring the physiological state of an individual in daily life. This review aims to examine existing research on photoplethysmogram concerning its generation mechanisms, measurement principles, clinical applications, noise definition, pre-processing techniques, feature detection techniques, and post-processing techniques for photoplethysmogram processing, especially from an engineering point of view. We performed an extensive search with the PubMed, Google Scholar, Institute of Electrical and Electronics Engineers (IEEE), ScienceDirect, and Web of Science databases. Exclusion conditions did not include the year of publication, but articles not published in English were excluded. Based on 118 articles, we identified four main topics of enabling PPG: (A) PPG waveform, (B) PPG features and clinical applications including basic features based on the original PPG waveform, combined features of PPG, and derivative features of PPG, (C) PPG noise including motion artifact baseline wandering and hypoperfusion, and (D) PPG signal processing including PPG preprocessing, PPG peak detection, and signal quality index. The application field of photoplethysmogram has been extending from the clinical to the mobile environment. Although there is no standardized pre-processing pipeline for PPG signal processing, as PPG data are acquired and accumulated in various ways, the recently proposed machine learning-based method is expected to offer a promising solution.
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Affiliation(s)
- Junyung Park
- Department of Biomedical Engineering, Chonnam National University, Yeosu, South Korea
| | - Hyeon Seok Seok
- Department of Biomedical Engineering, Chonnam National University, Yeosu, South Korea
| | - Sang-Su Kim
- Department of Biomedical Engineering, Chonnam National University, Yeosu, South Korea
| | - Hangsik Shin
- Department of Convergence Medicine, University of Ulsan College of Medicine, Asan Medical Center, Seoul, South Korea
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24
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Ahmed Z, Rajendran K, Gong H, McCollough C, Leng S. Quantitative assessment of motion effects in dual-source dual-energy CT and dual-source photon-counting detector CT. Proc SPIE Int Soc Opt Eng 2022; 12031:120311P. [PMID: 35785242 PMCID: PMC9245006 DOI: 10.1117/12.2611030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Conventional dual-source CT scanners can be used to either provide better temporal resolution or dual-energy imaging, but not both at the same time. This presents a dilemma in cardiac CT as both high temporal resolution and multi-energy imaging are desirable. The current study evaluated a dual-source photon-counting-detector (DS-PCD) CT which can acquire multi-energy images at high temporal resolution. A cardiac motion phantom with a 3-mm diameter iodinated rod, mimicking the right coronary artery, was scanned 25 times using a DS-PCD CT (66 ms resolution) and a dual-source dual-energy (DS-DE, 125 ms resolution) CT. Low/high energy images and iodine maps were reconstructed at 40% and 75% cardiac phases. To quantify the impact of motion on image quality, dice similarity coefficient was computed between the low/high energy images while the circularity and effective diameter of the iodinated rod were computed on the iodine maps. The dice coefficients were higher for DS-PCD with a mean of 0.89 and 0.91 at the 40% and 70% phases, while DS-DE had a lower mean of 0.20 and 0.78, respectively. The circularity was excellent for DS-PCD with a mean of 0.97 and 0.98 at the 40% and 75% phases, while DS-DE had a mean of 0.71 and 0.98, respectively. The effective diameter was accurate for DS-PCD with a mean of 2.9 mm (true size of 3 mm) at both phases, while DS-DE had a mean of 4.0 mm and 3.2 mm at the 40% and 75% phases, respectively. These results indicate that DS-PCD CT enables simultaneous high temporal resolution and multi-energy cardiac imaging with minimal motion artifacts.
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Affiliation(s)
- Zaki Ahmed
- Department of Radiology, Mayo Clinic, Rochester, MN, USA
| | | | - Hao Gong
- Department of Radiology, Mayo Clinic, Rochester, MN, USA
| | | | - Shuai Leng
- Department of Radiology, Mayo Clinic, Rochester, MN, USA
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25
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Xu Y, Sushmit A, Lyu Q, Li Y, Cao X, Maltz JS, Wang G, Yu H. Cardiac CT motion artifact grading via semi-automatic labeling and vessel tracking using synthetic image-augmented training data. J Xray Sci Technol 2022; 30:433-445. [PMID: 35342075 DOI: 10.3233/xst-211109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Cardiac CT provides critical information for the evaluation of cardiovascular diseases. However, involuntary patient motion and physiological movement of the organs during CT scanning cause motion blur in the reconstructed CT images, degrading both cardiac CT image quality and its diagnostic value. In this paper, we propose and demonstrate an effective and efficient method for CT coronary angiography image quality grading via semi-automatic labeling and vessel tracking. These algorithms produce scores that accord with those of expert readers to within 0.85 points on a 5-point scale. We also train a neural network model to perform fully-automatic motion artifact grading. We demonstrate, using XCAT simulation tools to generate realistic phantom CT data, that supplementing clinical data with synthetic data improves the scoring performance of this network. With respect to ground truth scores assigned by expert operators, the mean square error of grading motion of the right coronary artery is reduced by 36% by synthetic data supplementation. This demonstrates that augmentation of clinical training data with realistically synthesized images can potentially reduce the number of clinical studies needed to train the network.
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Affiliation(s)
- Yongshun Xu
- Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, MA, USA
| | - Asif Sushmit
- Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA
| | - Qing Lyu
- Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA
| | - Ying Li
- Molecular Imaging and Computed Tomography, GE Healthcare, 3000 N Grandview Boulevard, Waukesha, WI, USA
| | - Ximiao Cao
- Molecular Imaging and Computed Tomography, GE Healthcare, 3000 N Grandview Boulevard, Waukesha, WI, USA
| | - Jonathan S Maltz
- Molecular Imaging and Computed Tomography, GE Healthcare, 3000 N Grandview Boulevard, Waukesha, WI, USA
- Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA, USA
| | - Ge Wang
- Department of Biomedical Engineering, Rensselaer Polytechnic Institute, Troy, NY, USA
| | - Hengyong Yu
- Department of Electrical and Computer Engineering, University of Massachusetts Lowell, Lowell, MA, USA
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26
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Yu F, Wang F, Li K, Du G, Deng B, Xie H, Yang G, Xiao T. Real-time X-ray imaging of mouse cerebral microvessels in vivo using a pixel temporal averaging method. J Synchrotron Radiat 2022; 29:239-246. [PMID: 34985441 PMCID: PMC8733992 DOI: 10.1107/s1600577521012522] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 11/25/2021] [Indexed: 06/14/2023]
Abstract
Rodents are used extensively as animal models for the preclinical investigation of microvascular-related diseases. However, motion artifacts in currently available imaging methods preclude real-time observation of microvessels in vivo. In this paper, a pixel temporal averaging (PTA) method that enables real-time imaging of microvessels in the mouse brain in vivo is described. Experiments using live mice demonstrated that PTA efficiently eliminated motion artifacts and random noise, resulting in significant improvements in contrast-to-noise ratio. The time needed for image reconstruction using PTA with a normal computer was 250 ms, highlighting the capability of the PTA method for real-time angiography. In addition, experiments with less than one-quarter of photon flux in conventional angiography verified that motion artifacts and random noise were suppressed and microvessels were successfully identified using PTA, whereas conventional temporal subtraction and averaging methods were ineffective. Experiments performed with an X-ray tube verified that the PTA method could also be successfully applied to microvessel imaging of the mouse brain using a laboratory X-ray source. In conclusion, the proposed PTA method may facilitate the real-time investigation of cerebral microvascular-related diseases using small animal models.
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Affiliation(s)
- Fucheng Yu
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201204, People’s Republic of China
- Shanghai Synchrotron Radiation Facility/Zhang Jiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201800, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Feixiang Wang
- Shanghai Synchrotron Radiation Facility/Zhang Jiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201800, People’s Republic of China
| | - Ke Li
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201204, People’s Republic of China
- Shanghai Synchrotron Radiation Facility/Zhang Jiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201800, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Guohao Du
- Shanghai Synchrotron Radiation Facility/Zhang Jiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201800, People’s Republic of China
| | - Biao Deng
- Shanghai Synchrotron Radiation Facility/Zhang Jiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201800, People’s Republic of China
| | - Honglan Xie
- Shanghai Synchrotron Radiation Facility/Zhang Jiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201800, People’s Republic of China
| | - Guoyuan Yang
- Med-X Research Institute and School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, People’s Republic of China
| | - Tiqiao Xiao
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201204, People’s Republic of China
- Shanghai Synchrotron Radiation Facility/Zhang Jiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201800, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
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27
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Cruttenden CE, Taylor JM, Ahmadi M, Zhang Y, Zhu XH, Chen W, Rajamani R. Reference-Free Adaptive Filtering of Extracellular Neural Signals Recording in Ultra-High Field Magnetic Resonance Imaging Scanners: Removal of Periodic Interferences. Biomed Signal Process Control 2022; 71:102758. [PMID: 35069775 PMCID: PMC8782249 DOI: 10.1016/j.bspc.2021.102758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
This paper focuses on the removal of periodic artifacts from neural signals recorded in rats in ultra-high field (UHF) MRI scanners, using a reference free adaptive feedforward method. Recording extracellular neural signals in the UHF environment is motivated by the desire to combine neural recording and UHF functional magnetic resonance imaging (fMRI) to better understand brain function. However, the neural signals are found to have extremely high noise artifacts of a periodic nature due to electromagnetic interference and due to small oscillatory motions. In particular, noise at 60 Hz and several harmonics of 60 Hz, sinusoidal noise from a pump, and low frequency breathing motion artifacts are observed. Due to significant overlap between the noise frequencies and the neural frequency region of interest, band pass filters cannot be effectively utilized in this application. Hence, this paper develops adaptive least squares feedforward cancellation filters to remove the periodic artifacts. The interference fundamental frequency is identified precisely using an implementation of k-means in an iterative approach. The paper includes significant animal data from rats recorded in an IACUC-approved procedure in 9.4T and 16.4T MRI machines. For breathing artifacts filtered from 4 rats, the mean signal cancellation values at the harmonic interference frequencies are 5.18, 12.97, and 20.87 dB/Hz for a sliding template subtraction, a single-stage impulse reference method, and the cascaded adaptive filtering approach respectively. For pump artifacts filtered from 2 chronically implanted rats, mean signal cancellation values are 2.85, 9.52 and 12.06 dB/Hz respectively. The experimental results show that periodic noise is very effectively removed by the developed cascaded adaptive least squares feedforward algorithm.
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Affiliation(s)
- Corey E. Cruttenden
- University of Minnesota Department of Mechanical Engineering, 111 Church St. SE, Minneapolis, MN 55455.,University of Minnesota Center for Magnetic Resonance Research, 2021 6th St. SE, Minneapolis, MN 55455
| | - Jennifer M. Taylor
- University of Minnesota Center for Magnetic Resonance Research, 2021 6th St. SE, Minneapolis, MN 55455.,University of Minnesota Department of Biomedical Engineering, 312 Church St. SE, Minneapolis MN 55455
| | - Mahdi Ahmadi
- University of Minnesota Department of Mechanical Engineering, 111 Church St. SE, Minneapolis, MN 55455
| | - Yi Zhang
- University of Minnesota Center for Magnetic Resonance Research, 2021 6th St. SE, Minneapolis, MN 55455
| | - Xiao-Hong Zhu
- University of Minnesota Center for Magnetic Resonance Research, 2021 6th St. SE, Minneapolis, MN 55455
| | - Wei Chen
- University of Minnesota Center for Magnetic Resonance Research, 2021 6th St. SE, Minneapolis, MN 55455
| | - Rajesh Rajamani
- University of Minnesota Department of Mechanical Engineering, 111 Church St. SE, Minneapolis, MN 55455.,Correspondence
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28
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Koirala N, Kleinman D, Perdue MV, Su X, Villa M, Grigorenko EL, Landi N. Widespread effects of dMRI data quality on diffusion measures in children. Hum Brain Mapp 2021; 43:1326-1341. [PMID: 34799957 PMCID: PMC8837592 DOI: 10.1002/hbm.25724] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 11/02/2021] [Accepted: 11/11/2021] [Indexed: 12/12/2022] Open
Abstract
Diffusion magnetic resonance imaging (dMRI) datasets are susceptible to several confounding factors related to data quality, which is especially true in studies involving young children. With the recent trend of large‐scale multicenter studies, it is more critical to be aware of the varied impacts of data quality on measures of interest. Here, we investigated data quality and its effect on different diffusion measures using a multicenter dataset. dMRI data were obtained from 691 participants (5–17 years of age) from six different centers. Six data quality metrics—contrast to noise ratio, outlier slices, and motion (absolute, relative, translation, and rotational)—and four diffusion measures—fractional anisotropy, mean diffusivity, tract density, and length—were computed for each of 36 major fiber tracts for all participants. The results indicated that four out of six data quality metrics (all except absolute and translation motion) differed significantly between centers. Associations between these data quality metrics and the diffusion measures differed significantly across the tracts and centers. Moreover, these effects remained significant after applying recently proposed harmonization algorithms that purport to remove unwanted between‐site variation in diffusion data. These results demonstrate the widespread impact of dMRI data quality on diffusion measures. These tracts and measures have been routinely associated with individual differences as well as group‐wide differences between neurotypical populations and individuals with neurological or developmental disorders. Accordingly, for analyses of individual differences or group effects (particularly in multisite dataset), we encourage the inclusion of data quality metrics in dMRI analysis.
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Affiliation(s)
| | | | - Meaghan V Perdue
- Haskins Laboratories, New Haven, Connecticut, USA.,Department of Psychological Sciences, University of Connecticut, Connecticut, USA
| | - Xing Su
- Haskins Laboratories, New Haven, Connecticut, USA
| | - Martina Villa
- Haskins Laboratories, New Haven, Connecticut, USA.,Department of Psychological Sciences, University of Connecticut, Connecticut, USA
| | - Elena L Grigorenko
- Haskins Laboratories, New Haven, Connecticut, USA.,Department of Psychology, University of Houston, Houston, Texas, USA
| | - Nicole Landi
- Haskins Laboratories, New Haven, Connecticut, USA.,Department of Psychological Sciences, University of Connecticut, Connecticut, USA
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29
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Fang Y, Zou Y, Xu J, Chen G, Zhou Y, Deng W, Zhao X, Roustaei M, Hsiai TK, Chen J. Ambulatory Cardiovascular Monitoring Via a Machine-Learning-Assisted Textile Triboelectric Sensor. Adv Mater 2021; 33:e2104178. [PMID: 34467585 PMCID: PMC9205313 DOI: 10.1002/adma.202104178] [Citation(s) in RCA: 83] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Revised: 07/12/2021] [Indexed: 05/21/2023]
Abstract
Wearable bioelectronics for continuous and reliable pulse wave monitoring against body motion and perspiration remains a great challenge and highly desired. Here, a low-cost, lightweight, and mechanically durable textile triboelectric sensor that can convert subtle skin deformation caused by arterial pulsatility into electricity for high-fidelity and continuous pulse waveform monitoring in an ambulatory and sweaty setting is developed. The sensor holds a signal-to-noise ratio of 23.3 dB, a response time of 40 ms, and a sensitivity of 0.21 µA kPa-1 . With the assistance of machine learning algorithms, the textile triboelectric sensor can continuously and precisely measure systolic and diastolic pressure, and the accuracy is validated via a commercial blood pressure cuff at the hospital. Additionally, a customized cellphone application (APP) based on built-in algorithm is developed for one-click health data sharing and data-driven cardiovascular diagnosis. The textile triboelectric sensor enabled wireless biomonitoring system is expected to offer a practical paradigm for continuous and personalized cardiovascular system characterization in the era of the Internet of Things.
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Affiliation(s)
- Yunsheng Fang
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Yongjiu Zou
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Jing Xu
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Guorui Chen
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Yihao Zhou
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Weili Deng
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Xun Zhao
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Mehrdad Roustaei
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
- School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Tzung K Hsiai
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
- School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Jun Chen
- Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA, 90095, USA
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30
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Xie Y, Song R, Yang D, Yu H, Sun C, Xie Q, Xu RX. Motion robust ICG measurements using a two-step spectrum denoising method. Physiol Meas 2021; 42. [PMID: 34433135 DOI: 10.1088/1361-6579/ac2131] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2021] [Accepted: 08/25/2021] [Indexed: 11/11/2022]
Abstract
Objective. Impedance cardiography (ICG) is a noninvasive and continuous method for evaluating stroke volume and cardiac output. However, the ICG measurement is easily interfered due to respiration and body movements. Taking into consideration about the spectral correlations between the simultaneously collected ICG, electrocardiogram (ECG), and acceleration signals, this paper introduces a two-step spectrum denoising method to remove motion artifacts of ICG measurements in both resting and exercising scenarios.Approach. First, the major motion artifacts of ECG and ICG are separately suppressed by the spectral subtraction with respect to acceleration signals. The obtained ECG and ICG are further decomposed into two sets of intrinsic mode functions (IMFs) through the ensemble empirical mode decomposition. We then extract the shared spectral information between the two sets of IMFs using the canonical correlation analysis in a spectral domain. Finally, the ICG signal is reconstructed using those canonical variates with largest spectral correlations with ECG IMFs.Main results. The denoising method was evaluated for 30 subjects under both resting and cycling scenarios. Experimental results show that the beat contribution factor of ICG signals increases from its original 80.1%-97.4% after removing the motion artifacts.Significance. The proposed denoising scheme effectively improves the reliability of diagnosis and analysis on cardiovascular diseases relying on ICG signals.
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Affiliation(s)
- Yao Xie
- School of Engineering Science, University of Science and Technology of China, Hefei, 230027, People's Republic of China.,Anhui Tongling Bionic Technology Co. Ltd, No. 5089, Wangjiang West Road, Hefei, People's Republic of China
| | - Rencheng Song
- Department of Biomedical Engineering, Hefei University of Technology, Hefei, 230009, People's Republic of China
| | - Dong Yang
- Anhui Tongling Bionic Technology Co. Ltd, No. 5089, Wangjiang West Road, Hefei, People's Republic of China
| | - Honglong Yu
- Department of Biomedical Engineering, Hefei University of Technology, Hefei, 230009, People's Republic of China
| | - Cuimin Sun
- School of Engineering Science, University of Science and Technology of China, Hefei, 230027, People's Republic of China
| | - Qilian Xie
- Anhui Tongling Bionic Technology Co. Ltd, No. 5089, Wangjiang West Road, Hefei, People's Republic of China.,Anhui Medical University, Hefei, 230032, People's Republic of China
| | - Ronald X Xu
- School of Engineering Science, University of Science and Technology of China, Hefei, 230027, People's Republic of China
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31
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Peterlik I, Strzelecki A, Lehmann M, Messmer P, Munro P, Paysan P, Plamondon M, Seghers D. Reducing residual- motion artifacts in iterative 3D CBCT reconstruction in image-guided radiation therapy. Med Phys 2021; 48:6497-6507. [PMID: 34529270 DOI: 10.1002/mp.15236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 07/04/2021] [Accepted: 08/27/2021] [Indexed: 11/11/2022] Open
Abstract
PURPOSE Recent evaluations of a 3D iterative cone-beam computed tomography (iCBCT) reconstruction method available on Varian radiation treatment devices demonstrated that iCBCT provides superior image quality when compared to analytical Feldkamp-Davis-Kress (FDK) method. However, iCBCT employs statistical penalized likelihood (PL) that is known to be highly sensitive to inconsistencies due to physiological motion occurring during the acquisition. We propose a computationally inexpensive extension of iCBCT addressing this deficiency. METHODS During the iterative process, the gradients of PL are modified to avoid the generation of motion-related artifacts. To assess the impact of this modification, we propose a motion simulation generating CBCT projections of a moving anatomy together with artifact-free images used as ground truth. Contrast-to-noise ratio and power spectra of difference images are computed to quantify the impact of the motion on reconstructed CBCT volumes as well as the effect of the proposed modification. RESULTS Using both simulated and clinical data, it is shown that the motion of patient's abdominal wall during the acquisition results in artifacts that can be quantified as low-frequency components in volumes reconstructed with iCBCT. Further, a quantitative evaluation demonstrates that the proposed modification of PL reduces these low-frequency components. While preserving the advantages of PL, it effectively suppresses the propagation of motion-related artifacts into clinically important regions, thus increasing the motion resiliency of iCBCT. CONCLUSIONS The proposed modified iterative reconstruction method significantly improves the quality of CBCT images of anatomies suffering from residual motion.
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Affiliation(s)
- Igor Peterlik
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
| | - Adam Strzelecki
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
| | - Mathias Lehmann
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
| | - Philippe Messmer
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
| | - Peter Munro
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
| | - Pascal Paysan
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
| | - Mathieu Plamondon
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
| | - Dieter Seghers
- Varian Medical Systems Imaging Laboratory GmbH, Taefernstrasse 7, Daettwil, Aargau, Switzerland
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32
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Burkhardt M, Thiel CM, Gießing C. Robust Correlation for Link Definition in Resting-State fMRI Brain Networks Can Reduce Motion-Related Artifacts. Brain Connect 2021; 12:18-25. [PMID: 34269612 DOI: 10.1089/brain.2020.1005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Introduction: It is well known that even small head movements introduce artifacts in resting-state functional magnetic resonance imaging data, and over the years, numerous methods were introduced to correct for this issue. The field of robust statistics, however, has not yet received much attention in this regard. In this article, we tested a recently developed statistical method called wrapping and compared it with two already established methods: data scrubbing and an independent component analysis-based approach for the automatic removal of motion artifacts (ICA-AROMA). Methods: A group of N = 120 healthy adult subjects were divided into high and low movement cohorts. The functional connectomes following wrapping, data scrubbing, and ICA-AROMA of the high movement cohort were compared with the mean functional connectome of the low movement cohort. Results and Discussion: Our results showed that wrapping could significantly decrease the Euclidean distance between connectomes of the two cohorts. Furthermore, wrapping was able to compensate the systematic effect of increased short distance correlations and reduced long distance correlations in functional connectomes, which often result from high subject motion. Our findings suggest that wrapping constitutes a valuable approach to correct for movement-related artifacts when estimating functional connectivity in the brain. Impact statement The influence of subject motion on functional magnetic resonance imaging (fMRI) data is still an actively discussed topic. However, to handle this problem, the field of robust statistics has not been given much attention yet. We want to fill this void by introducing and validating a recently developed method for calculating robust correlations. Our study shows that estimating robust correlations can improve fMRI preprocessing, and documents for a wider readership that fMRI analyses can benefit from new methods in the field of robust statistics.
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Affiliation(s)
- Micha Burkhardt
- Biological Psychology Lab, Department of Psychology, School of Medicine and Health Sciences, Research Center Neurosensory Science and Systems, Carl von Ossietzky University Oldenburg, Oldenburg, Germany
| | - Christiane M Thiel
- Biological Psychology Lab, Department of Psychology, School of Medicine and Health Sciences, Research Center Neurosensory Science and Systems, Carl von Ossietzky University Oldenburg, Oldenburg, Germany.,Cluster of Excellence "Hearing4all," University of Oldenburg, Oldenburg, Germany
| | - Carsten Gießing
- Biological Psychology Lab, Department of Psychology, School of Medicine and Health Sciences, Research Center Neurosensory Science and Systems, Carl von Ossietzky University Oldenburg, Oldenburg, Germany
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33
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Halvaei H, Sörnmo L, Stridh M. Signal Quality Assessment of a Novel ECG Electrode for Motion Artifact Reduction. Sensors (Basel) 2021; 21:5548. [PMID: 34450990 PMCID: PMC8402297 DOI: 10.3390/s21165548] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 08/10/2021] [Accepted: 08/15/2021] [Indexed: 12/20/2022]
Abstract
BACKGROUND The presence of noise is problematic in the analysis and interpretation of the ECG, especially in ambulatory monitoring. Restricting the analysis to high-quality signal segments only comes with the risk of excluding significant arrhythmia episodes. Therefore, the development of novel electrode technology, robust to noise, continues to be warranted. METHODS The signal quality of a novel wet ECG electrode (Piotrode) is assessed and compared to a commercially available, commonly used electrode (Ambu). The assessment involves indices of QRS detection and atrial fibrillation detection performance, as well as signal quality indices (ensemble standard deviation and time-frequency repeatability), computed from ECGs recorded simultaneously from 20 healthy subjects performing everyday activities. RESULTS The QRS detection performance using the Piotrode was considerably better than when using the Ambu, especially for running but also for lighter activities. The two signal quality indices demonstrated similar trends: the gap in quality became increasingly larger as the subjects became increasingly more active. CONCLUSIONS The novel wet ECG electrode produces signals with less motion artifacts, thereby offering the potential to reduce the review burden, and accordingly the cost, associated with ambulatory monitoring.
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Affiliation(s)
- Hesam Halvaei
- Department of Biomedical Engineering, Lund University, SE-22100 Lund, Sweden;
| | - Leif Sörnmo
- Department of Biomedical Engineering, Lund University, SE-22100 Lund, Sweden;
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Castaño FA, Hernández AM. Sensitivity and Adjustment Model of Electrocardiographic Signal Distortion Based on the Electrodes' Location and Motion Artifacts Reduction for Wearable Monitoring Applications. Sensors (Basel) 2021; 21:s21144822. [PMID: 34300562 PMCID: PMC8309909 DOI: 10.3390/s21144822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 06/11/2021] [Accepted: 06/12/2021] [Indexed: 11/16/2022]
Abstract
Wearable vital signs monitoring and specially the electrocardiogram have taken important role due to the information that provide about high-risk diseases, it has been evidenced by the needed to increase the health service coverage in home care as has been encouraged by World Health Organization. Some wearables devices have been developed to monitor the Electrocardiographic in which the location of the measurement electrodes is modified respect to the Einthoven model. However, mislocation of the electrodes on the torso can lead to the modification of acquired signals, diagnostic mistakes and misinterpretation of the information in the signal. This work presents a volume conductor evaluation and an Electrocardiographic signal waveform comparison when the location of electrodes is changed, to find a electrodes’ location that reduces distortion of interest signals. In addition, effects of motion artifacts and electrodes’ location on the signal acquisition are evaluated. A group of volunteers was recorded to obtain Electrocardiographic signals, the result was compared with a computational model of the heart behavior through the Ensemble Average Electrocardiographic, Dynamic Time Warping and Signal-to-Noise Ratio methods to quantitatively determine the signal distortion. It was found that while the Einthoven method is followed, it is possible to acquire the Electrocardiographic signal from the patient’s torso or back without a significant difference, and the electrodes position can be moved 6 cm at most from the suggested location by the Einthoven triangle in Mason–Likar’s method.
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35
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Brombal L, Arana Peña LM, Arfelli F, Longo R, Brun F, Contillo A, Di Lillo F, Tromba G, Di Trapani V, Donato S, Menk RH, Rigon L. Motion artifacts assessment and correction using optical tracking in synchrotron radiation breast CT. Med Phys 2021; 48:5343-5355. [PMID: 34252212 PMCID: PMC9291820 DOI: 10.1002/mp.15084] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 05/12/2021] [Accepted: 06/21/2021] [Indexed: 11/23/2022] Open
Abstract
Purpose The SYRMA‐3D collaboration is setting up a breast computed tomography (bCT) clinical program at the Elettra synchrotron radiation facility in Trieste, Italy. Unlike the few dedicated scanners available at hospitals, synchrotron radiation bCT requires the patient's rotation, which in turn implies a long scan duration (from tens of seconds to few minutes). At the same time, it allows the achievement of high spatial resolution. These features make synchrotron radiation bCT prone to motion artifacts. This article aims at assessing and compensating for motion artifacts through an optical tracking approach. Methods In this study, patients’ movements due to breathing have been first assessed on seven volunteers and then simulated during the CT scans of a breast phantom and a surgical specimen, by adding a periodic oscillatory motion (constant speed, 1 mm amplitude, 12 cycles/minute). CT scans were carried out at 28 keV with a mean glandular dose of 5 mGy. Motion artifacts were evaluated and a correction algorithm based on the optical tracking of fiducial marks was introduced. A quantitative analysis based on the structural similarity (SSIM) index and the normalized mean square error (nMSE) was performed on the reconstructed CT images. Results CT images reconstructed through the optical tracking procedure were found to be as good as the motionless reference image. Moreover, the analysis of SSIM and nMSE demonstrated that an uncorrected motion of the order of the system's point spread function (around 0.1 mm in the present case) can be tolerated. Conclusions Results suggest that a motion correction procedure based on an optical tracking system would be beneficial in synchrotron radiation bCT.
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Affiliation(s)
- Luca Brombal
- Department of Physics, University of Trieste, Trieste, Italy.,Division of Trieste, Istituto Nazionale di Fisica Nucleare, Trieste, Italy
| | - Lucia Mariel Arana Peña
- Department of Physics, University of Trieste, Trieste, Italy.,Division of Trieste, Istituto Nazionale di Fisica Nucleare, Trieste, Italy
| | - Fulvia Arfelli
- Department of Physics, University of Trieste, Trieste, Italy.,Division of Trieste, Istituto Nazionale di Fisica Nucleare, Trieste, Italy
| | - Renata Longo
- Department of Physics, University of Trieste, Trieste, Italy.,Division of Trieste, Istituto Nazionale di Fisica Nucleare, Trieste, Italy
| | - Francesco Brun
- Division of Trieste, Istituto Nazionale di Fisica Nucleare, Trieste, Italy.,Department of Engineering and Architecture, University of Trieste, Trieste, Italy
| | | | | | | | - Vittorio Di Trapani
- Department of Physical sciences, Earth and environment, University of Siena, Siena, Italy.,Division of Pisa, Istituto Nazionale di Fisica Nucleare, Pisa, Italy
| | - Sandro Donato
- Department of Physics, University of Calabria, Arcavacata di Rende, Cosenza, Italy.,Division of Frascati, Istituto Nazionale di Fisca Nucleare, Frascati, Rome, Italy
| | - Ralf Hendrik Menk
- Division of Trieste, Istituto Nazionale di Fisica Nucleare, Trieste, Italy.,Elettra-Sincrotrone Trieste S.C.p.A., Trieste, Italy.,Department of Medical Imaging, University of Saskatchewan, Saskatoon, Canada
| | - Luigi Rigon
- Department of Physics, University of Trieste, Trieste, Italy.,Division of Trieste, Istituto Nazionale di Fisica Nucleare, Trieste, Italy
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36
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Han Z, Li L, Jin W, Wang X, Jiao G, Liu X, Wang H. Denoising and Motion Artifact Removal Using Deformable Kernel Prediction Neural Network for Color-Intensified CMOS. Sensors (Basel) 2021; 21:3891. [PMID: 34200038 DOI: 10.3390/s21113891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 06/03/2021] [Accepted: 06/03/2021] [Indexed: 11/17/2022]
Abstract
Image intensifiers are used internationally as advanced military night-vision devices. They have better imaging performance in low-light-level conditions than CMOS/CCD. The intensified CMOS (ICMOS) was developed to satisfy the digital demand of image intensifiers. In order to make the ICMOS capable of color imaging in low-light-level conditions, a liquid-crystal tunable filter based color imaging ICMOS was developed. Due to the time-division color imaging scheme, motion artifacts may be introduced when a moving target is in the scene. To solve this problem, a deformable kernel prediction neural network (DKPNN) is proposed for joint denoising and motion artifact removal, and a data generation method which generates images with color-channel motion artifacts is also proposed to train the DKPNN. The results show that, compared with other denoising methods, the proposed DKPNN performed better both on generated noisy data and on real noisy data. Therefore, the proposed DKPNN is more suitable for color ICMOS denoising and motion artifact removal. A new exploration was made for low-light-level color imaging schemes.
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37
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Popović-Maneski L, Ivanović MD, Atanasoski V, Miletić M, Zdolšek S, Bojović B, Hadžievski L. Properties of different types of dry electrodes for wearable smart monitoring devices. ACTA ACUST UNITED AC 2021; 65:405-415. [PMID: 32238599 DOI: 10.1515/bmt-2019-0167] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Accepted: 11/11/2019] [Indexed: 01/09/2023]
Abstract
Wearable smart monitors (WSMs) applied for the estimation of electrophysiological signals are of utmost interest for a non-stressed life. WSM which records heart muscle activities could signalize timely a life-threatening event. The heart muscle activities are typically recorded across the heart at the surface of the body; hence, a WSM monitor requires high-quality surface electrodes. The electrodes used in the clinical settings [i.e. silver/silver chloride (Ag/AgCl) with the gel] are not practical for the daily out of clinic usage. A practical WSM requires the application of a dry electrode with stable and reproducible electrical characteristics. We compared the characteristics of six types of dry electrodes and one gelled electrode during short-term recordings sessions (≈30 s) in real-life conditions: Orbital, monolithic polymer plated with Ag/AgCl, and five rectangular shaped 10 × 6 × 2 mm electrodes (Orbital, Ag electrode, Ag/AgCl electrode, gold electrode and stainless-steel AISI304). The results of a well-controlled analysis which considered motion artifacts, line noise and junction potentials suggest that among the dry electrodes Ag/AgCl performs the best. The Ag/AgCl electrode is in average three times better compared with the stainless-steel electrode often used in WSMs.
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Affiliation(s)
- Lana Popović-Maneski
- Institute of Technical Sciences of the Serbian Academy of Sciences and Arts, Knez Mihailova 35/IV, 11000 Belgrade, Serbia
| | - Marija D Ivanović
- Vinča Institute of Nuclear Sciences, Mike Petrovića Alasa 12-14, 11351 Belgrade, Serbia
| | - Vladimir Atanasoski
- Department of Biomedical Engineering and Technology, University of Belgrade, Studentski trg 1, 11000 Belgrade, Serbia
| | - Marjan Miletić
- Vinča Institute of Nuclear Sciences, Mike Petrovića Alasa 12-14, 11351 Belgrade, Serbia
| | - Sanja Zdolšek
- Vinča Institute of Nuclear Sciences, Mike Petrovića Alasa 12-14, 11351 Belgrade, Serbia
| | - Boško Bojović
- Vinča Institute of Nuclear Sciences, Mike Petrovića Alasa 12-14, 11351 Belgrade, Serbia
| | - Ljupčo Hadžievski
- Vinča Institute of Nuclear Sciences, Mike Petrovića Alasa 12-14, 11351 Belgrade, Serbia
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38
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Liang X, Su P, Patil SG, Elsaid NMH, Roys S, Stone M, Gullapalli RP, Prince JL, Zhuo J. Prospective motion detection and re-acquisition in diffusion MRI using a phase image-based method-Application to brain and tongue imaging. Magn Reson Med 2021; 86:725-737. [PMID: 33665929 DOI: 10.1002/mrm.28729] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 01/22/2021] [Accepted: 01/23/2021] [Indexed: 11/08/2022]
Abstract
PURPOSE To develop an image-based motion-robust diffusion MRI (dMRI) acquisition framework that is able to minimize motion artifacts caused by rigid and nonrigid motion, applicable to both brain and tongue dMRI. METHODS We developed a novel prospective motion-correction technique in dMRI using a phase image-based real-time motion-detection method (PITA-MDD) with re-acquisition of motion-corrupted images. The prospective PITA-MDD acquisition technique was tested in the brains and tongues of volunteers. The subjects were instructed to move their heads or swallow, to induce motion. Motion-detection efficacy was validated against visual inspection as the gold standard. The effect of the PITA-MDD technique on diffusion-parameter estimates was evaluated by comparing reconstructed fiber tracts using tractography with and without re-acquisition. RESULTS The prospective PITA-MDD technique was able to effectively and accurately detect motion-corrupted data as compared with visual inspection. Tractography results demonstrated that PITA-MDD motion detection followed by re-acquisition helps in recovering lost and misshaped fiber tracts in the brain and tongue that would otherwise be corrupted by motion and yield erroneous estimates of the diffusion tensor. CONCLUSION A prospective PITA-MDD technique was developed for dMRI acquisition, providing improved dMRI image quality and motion-robust diffusion estimation of the brain and tongue.
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Affiliation(s)
- Xiao Liang
- Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA
| | - Pan Su
- Siemens Medical Solutions USA Inc, Malvern, Pennsylvania, USA
| | - Sunil G Patil
- Siemens Medical Solutions USA Inc, Malvern, Pennsylvania, USA
| | - Nahla M H Elsaid
- Department of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, Connecticut, USA
| | - Steven Roys
- Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA
| | - Maureen Stone
- Department of Neural and Pain Sciences and Department of Orthodontics, University of Maryland School of Dentistry, Baltimore, Maryland, USA
| | - Rao P Gullapalli
- Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA
| | - Jerry L Prince
- Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, Maryland, USA
| | - Jiachen Zhuo
- Department of Diagnostic Radiology and Nuclear Medicine, University of Maryland School of Medicine, Baltimore, Maryland, USA
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Werner R, Szkitsak J, Sentker T, Madesta F, Schwarz A, Fernolendt S, Vornehm M, Gauer T, Bert C, Hofmann C. Comparison of intelligent 4D CT sequence scanning and conventional spiral 4D CT: a first comprehensive phantom study. Phys Med Biol 2021; 66. [PMID: 33171441 DOI: 10.1088/1361-6560/abc93a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Accepted: 11/10/2020] [Indexed: 11/11/2022]
Abstract
4D CT imaging is a cornerstone of 4D radiotherapy treatment. Clinical 4D CT data are, however, often affected by severe artifacts. The artifacts are mainly caused by breathing irregularity and retrospective correlation of breathing phase information and acquired projection data, which leads to insufficient projection data coverage to allow for proper reconstruction of 4D CT phase images. The recently introduced 4D CT approach i4DCT (intelligent 4D CT sequence scanning) aims to overcome this problem by breathing signal-driven tube control. The present motion phantom study describes the first in-depth evaluation of i4DCT in a real-world scenario. Twenty-eight 4D CT breathing curves of lung and liver tumor patients with pronounced breathing irregularity were selected to program the motion phantom. For every motion pattern, 4D CT imaging was performed with i4DCT and a conventional spiral 4D CT mode. For qualitative evaluation, the reconstructed 4D CT images were presented to clinical experts, who scored image quality. Further quantitative evaluation was based on established image intensity-based artifact metrics to measure (dis)similarity of neighboring image slices. In addition, beam-on and scan times of the scan modes were analyzed. The expert rating revealed a significantly higher image quality for the i4DCT data. The quantitative evaluation further supported the qualitative: While 20% of the slices of the conventional spiral 4D CT images were found to be artifact-affected, the corresponding fraction was only 4% for i4DCT. The beam-on time (surrogate of imaging dose) did not significantly differ between i4DCT and spiral 4D CT. Overall i4DCT scan times (time between first beam-on and last beam-on event, including scan breaks to compensate for breathing irregularity) were, on average, 53% longer compared to spiral CT. Thus, the results underline that i4DCT significantly improves 4D CT image quality compared to standard spiral CT scanning in the case of breathing irregularity during scanning.
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Affiliation(s)
- René Werner
- University Medical Center Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany
| | - Juliane Szkitsak
- Department of Radiation Oncology, Universitätsklinikum Erlangen, Friederich-Alexander-Universität Erlangen-Nürnberg, 91504 Erlangen, Germany
| | - Thilo Sentker
- University Medical Center Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany
| | - Frederic Madesta
- University Medical Center Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany
| | - Annette Schwarz
- Friederich-Alexander-Universität Erlangen-Nürnberg, 91504 Erlangen, Germany.,Siemens Healthcare GmbH, Siemensstr. 3, 91301 Forchheim, Germany
| | - Susanne Fernolendt
- Friederich-Alexander-Universität Erlangen-Nürnberg, 91504 Erlangen, Germany.,Siemens Healthcare GmbH, Siemensstr. 3, 91301 Forchheim, Germany
| | - Marc Vornehm
- Friederich-Alexander-Universität Erlangen-Nürnberg, 91504 Erlangen, Germany.,Siemens Healthcare GmbH, Siemensstr. 3, 91301 Forchheim, Germany
| | - Tobias Gauer
- University Medical Center Hamburg-Eppendorf, Martinistr. 52, 20246 Hamburg, Germany
| | - Christoph Bert
- Department of Radiation Oncology, Universitätsklinikum Erlangen, Friederich-Alexander-Universität Erlangen-Nürnberg, 91504 Erlangen, Germany
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40
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Bose S, Shen B, Johnston ML. A Batteryless Motion-Adaptive Heartbeat Detection System-on-Chip Powered by Human Body Heat. IEEE J Solid-State Circuits 2020; 55:2902-2913. [PMID: 33311721 PMCID: PMC7731923 DOI: 10.1109/jssc.2020.3013789] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
This paper presents a batteryless heartbeat detection system-on-chip (SoC) powered by human body heat. An adaptive threshold generation architecture using pulse-width locked loop (PWLL) is developed to detect heartbeats from electrocardiogram (ECG) in the presence of motion artifacts. The sensing system is autonomously powered by harvesting thermal energy from human body heat using a thermoelectric generator (TEG) coupled to a low-voltage, self-starting boost converter and integrated power management system. The SoC was implemented in a 0.18 μm CMOS process and is fully functional with a minimum input power of 20 μW, provided by a portable TEG at 20 mV with a ~0.5 °C temperature gradient. The complete system demonstrates motion-adaptive, power-autonomous heartbeat detection for sustainable healthcare using wearable devices.
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Affiliation(s)
- Soumya Bose
- The School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR 97331, USA.; Intel Corporation, Hillsboro, OR 97124 USA
| | - Boyu Shen
- The School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR 97331, USA
| | - Matthew L Johnston
- The School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, OR 97331, USA
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Reljin N, Lazaro J, Hossain MB, Noh YS, Cho CH, Chon KH. Using the Redundant Convolutional Encoder-Decoder to Denoise QRS Complexes in ECG Signals Recorded with an Armband Wearable Device. Sensors (Basel) 2020; 20:E4611. [PMID: 32824420 PMCID: PMC7472132 DOI: 10.3390/s20164611] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 08/11/2020] [Accepted: 08/14/2020] [Indexed: 12/04/2022]
Abstract
Long-term electrocardiogram (ECG) recordings while performing normal daily routines are often corrupted with motion artifacts, which in turn, can result in the incorrect calculation of heart rates. Heart rates are important clinical information, as they can be used for analysis of heart-rate variability and detection of cardiac arrhythmias. In this study, we present an algorithm for denoising ECG signals acquired with a wearable armband device. The armband was worn on the upper left arm by one male participant, and we simultaneously recorded three ECG channels for 24 h. We extracted 10-s sequences from armband recordings corrupted with added noise and motion artifacts. Denoising was performed using the redundant convolutional encoder-decoder (R-CED), a fully convolutional network. We measured the performance by detecting R-peaks in clean, noisy, and denoised sequences and by calculating signal quality indices: signal-to-noise ratio (SNR), ratio of power, and cross-correlation with respect to the clean sequences. The percent of correctly detected R-peaks in denoised sequences was higher than in sequences corrupted with either added noise (70-100% vs. 34-97%) or motion artifacts (91.86% vs. 61.16%). There was notable improvement in SNR values after denoising for signals with noise added (7-19 dB), and when sequences were corrupted with motion artifacts (0.39 dB). The ratio of power for noisy sequences was significantly lower when compared to both clean and denoised sequences. Similarly, cross-correlation between noisy and clean sequences was significantly lower than between denoised and clean sequences. Moreover, we tested our denoising algorithm on 60-s sequences extracted from recordings from the Massachusetts Institute of Technology-Beth Israel Hospital (MIT-BIH) arrhythmia database and obtained improvement in SNR values of 7.08 ± 0.25 dB (mean ± standard deviation (sd)). These results from a diverse set of data suggest that the proposed denoising algorithm improves the quality of the signal and can potentially be applied to most ECG measurement devices.
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Affiliation(s)
- Natasa Reljin
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA; (N.R.); (J.L.); (M.B.H.); (C.H.C.)
| | - Jesus Lazaro
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA; (N.R.); (J.L.); (M.B.H.); (C.H.C.)
- Biomedical Signal Interpretation and Computational Simulation (BSICoS) Group, Aragon Institute of Engineering Research (I3A), IIS Aragon, University of Zaragoza, 50009 Zaragoza, Spain
- CIBER in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), 28029 Madrid, Spain
| | - Md Billal Hossain
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA; (N.R.); (J.L.); (M.B.H.); (C.H.C.)
| | - Yeon Sik Noh
- College of Nursing, University of Massachusetts Amherst, Amherst, MA 01003, USA;
- Department of Electrical and Computer Engineering, University of Massachusetts Amherst, Amherst, MA 01002, USA;
| | - Chae Ho Cho
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA; (N.R.); (J.L.); (M.B.H.); (C.H.C.)
| | - Ki H. Chon
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06269, USA; (N.R.); (J.L.); (M.B.H.); (C.H.C.)
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Aygun A, Ghasemzadeh H, Jafari R. Robust Interbeat Interval and Heart Rate Variability Estimation Method From Various Morphological Features Using Wearable Sensors. IEEE J Biomed Health Inform 2020; 24:2238-2250. [PMID: 31899444 PMCID: PMC11036325 DOI: 10.1109/jbhi.2019.2962627] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
We introduce a novel approach for robust estimation of physiological parameters such as interbeat interval (IBI) and heart rate variability (HRV) from cardiac signals captured with wearable sensors in the presence of motion artifacts. Motion artifact due to physical exercise is known as a major source of noise that contributes to a significant decline in the performance of IBI and HRV estimation techniques for cardiac monitoring in free-living environments. Therefore, developing robust estimation algorithms is essential for utilization of wearable sensors in daily life situations. The proposed approach includes two algorithmic components. First, we propose a combinatorial technique to select characteristic points that define heartbeats in noisy signals in time domain. The heartbeat detection problem is defined as a shortest path search problem on a direct acyclic graph that leverages morphological features of the cardiac signals by taking advantage of the time-continuity of heartbeats - each heartbeat ends with the starting point of the next heartbeat. The graph is constructed with vertices and edges representing candidate morphological features and IBIs, respectively. Second, we propose a fusion technique to combine physiological parameters estimated from different morphological features using the shortest path algorithm to obtain more accurate IBI/HRV estimations. We evaluate our techniques on motion-corrupted photoplethysmogram and electrocardiogram signals. Our results indicate that the estimated IBIs are highly correlated with the ground truth (r = 0.89) and detected HRV parameters indicate high correlation with the true HRV parameters. Furthermore, our findings demonstrate that the developed fusion technique, which utilizes different morphological features, achieves a correlation coefficient that is at least 3% higher than that obtained using single physiological characteristic.
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Sogabe M, Ohzeki M, Fujimoto K, Sehara-Fujisawa A, Nishimura S. Restored interlaced volumetric imaging increases image quality and scanning speed during intravital imaging in living mice. J Biophotonics 2020; 13:e201960204. [PMID: 32078253 DOI: 10.1002/jbio.201960204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2019] [Revised: 01/07/2020] [Accepted: 01/17/2020] [Indexed: 06/10/2023]
Abstract
Dynamic intravital imaging is essential for revealing ongoing biological phenomena within living organisms and is influenced primarily by several factors: motion artifacts, optical properties and spatial resolution. Conventional imaging quality within a volume, however, is degraded by involuntary movements and trades off between the imaged volume, imaging speed and quality. To balance such trade-offs incurred by two-photon excitation microscopy during intravital imaging, we developed a unique combination of interlaced scanning and a simple image restoration algorithm based on biological signal sparsity and a graph Laplacian matrix. This method increases the scanning speed by a factor of four for a field size of 212 μm × 106 μm × 130 μm, and significantly improves the quality of four-dimensional dynamic volumetric data by preventing irregular artifacts due to the movement observed with conventional methods. Our data suggest this method is robust enough to be applied to multiple types of soft tissue.
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Affiliation(s)
- Maina Sogabe
- Department of Regeneration Science and Engineering, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan
| | - Masayuki Ohzeki
- Graduate School of Information Sciences, Tohoku University, Sendai, Japan
| | - Koji Fujimoto
- Graduate School of Medicine, Human Brain Research Center, Kyoto University, Kyoto, Japan
| | - Atsuko Sehara-Fujisawa
- Department of Regeneration Science and Engineering, Institute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan
| | - Satoshi Nishimura
- Center for Molecular Medicine, Jichi Medical University, Tochigi, Japan
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Georgieva S, Lester S, Noreika V, Yilmaz MN, Wass S, Leong V. Toward the Understanding of Topographical and Spectral Signatures of Infant Movement Artifacts in Naturalistic EEG. Front Neurosci 2020; 14:352. [PMID: 32410940 PMCID: PMC7199478 DOI: 10.3389/fnins.2020.00352] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2019] [Accepted: 03/23/2020] [Indexed: 11/21/2022] Open
Abstract
Electroencephalography (EEG) is perhaps the most widely used brain-imaging technique for pediatric populations. However, EEG signals are prone to distortion by motion. Compared to adults, infants' motion is both more frequent and less stereotypical yet motion effects on the infant EEG signal are largely undocumented. Here, we present a systematic assessment of naturalistic motion effects on the infant EEG signal. EEG recordings were performed with 14 infants (12 analyzed) who passively watched movies whilst spontaneously producing periods of bodily movement and rest. Each infant produced an average of 38.3 s (SD = 14.7 s) of rest and 18.8 s (SD = 17.9 s) of single motion segments for the final analysis. Five types of infant motions were analyzed: Jaw movements, and Limb movements of the Hand, Arm, Foot, and Leg. Significant movement-related distortions of the EEG signal were detected using cluster-based permutation analysis. This analysis revealed that, relative to resting state, infants' Jaw and Arm movements produced significant increases in beta (∼15 Hz) power, particularly over peripheral sites. Jaw movements produced more anteriorly located effects than Arm movements, which were most pronounced over posterior parietal and occipital sites. The cluster analysis also revealed trends toward decreased power in the theta and alpha bands observed over central topographies for all motion types. However, given the very limited quantity of infant data in this study, caution is recommended in interpreting these findings before subsequent replications are conducted. Nonetheless, this work is an important first step to inform future development of methods for addressing EEG motion-related artifacts. This work also supports wider use of naturalistic paradigms in social and developmental neuroscience.
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Affiliation(s)
- Stanimira Georgieva
- Department of Psychology, University of Cambridge, Cambridge, United Kingdom
| | - Suzannah Lester
- Department of Psychology, University of Cambridge, Cambridge, United Kingdom
| | - Valdas Noreika
- Department of Psychology, University of Cambridge, Cambridge, United Kingdom
| | - Meryem Nazli Yilmaz
- Department of Psychology, University of Cambridge, Cambridge, United Kingdom
| | - Sam Wass
- Department of Psychology, University of East London, London, United Kingdom
| | - Victoria Leong
- Department of Psychology, University of Cambridge, Cambridge, United Kingdom
- Division of Psychology, Nanyang Technological University, Singapore, Singapore
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45
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Dillinger H, Walheim J, Kozerke S. On the limitations of echo planar 4D flow MRI. Magn Reson Med 2020; 84:1806-1816. [PMID: 32212352 DOI: 10.1002/mrm.28236] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Revised: 02/06/2020] [Accepted: 02/07/2020] [Indexed: 01/09/2023]
Abstract
PURPOSE To compare EPI and GRE readout in high-flow velocity regimes and evaluate their impact on measurement accuracy in silico and in vitro. THEORY AND METHODS Phase-contrast sequences for EPI and GRE were simulated using CFD velocity data to assess displacement artifacts as well as effective spatial resolution. In silico findings were validated experimentally using a steady flow phantom. RESULTS For EPI factor 5 and simulated stenotic flow with peak velocity of 2.2 m s - 1 , displacement artifacts resulted in misregistration of 7.3 mm at echo time and the effective resolution was locally reduced by factors 5 and 8 compared to GRE for flow along phase and frequency encoding directions, respectively. In vitro, a maximum velocity difference between EPI factor 5 and GRE of 0.97 m s - 1 was found. CONCLUSIONS Four-dimensional flow MRI using EPI readout results not only in considerable velocity misregistration but also in spatially varying degradation of resolution. The proposed work indicates that EPI is inferior to standard GRE for 4D flow MRI.
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Affiliation(s)
- Hannes Dillinger
- Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
| | - Jonas Walheim
- Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
| | - Sebastian Kozerke
- Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
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46
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Bones IK, Franklin SL, Harteveld AA, van Osch MJP, Hendrikse J, Moonen C, van Stralen M, Bos C. Influence of labeling parameters and respiratory motion on velocity-selective arterial spin labeling for renal perfusion imaging. Magn Reson Med 2020; 84:1919-1932. [PMID: 32180263 PMCID: PMC7384062 DOI: 10.1002/mrm.28252] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Revised: 01/15/2020] [Accepted: 02/19/2020] [Indexed: 12/12/2022]
Abstract
Purpose Arterial transit time uncertainties and challenges during planning are potential issues for renal perfusion measurement using spatially selective arterial spin labeling techniques. To mitigate these potential issues, a spatially non‐selective technique, such as velocity‐selective arterial spin labeling (VSASL), could be an alternative. This article explores the influence of VSASL sequence parameters and respiratory induced motion on VS‐label generation. Methods VSASL data were acquired in human subjects (n = 15), with both single and dual labeling, during paced‐breathing, while essential sequence parameters were systematically varied; (1) cutoff velocity, (2) labeling gradient orientation and (3) post‐labeling delay (PLD). Pseudo‐continuous ASL was acquired as a spatially selective reference. In an additional free‐breathing single VSASL experiment (n = 9) we investigated respiratory motion influence on VS‐labeling. Absolute renal blood flow (RBF), perfusion weighted signal (PWS), and temporal signal‐to‐noise ratio (tSNR) were determined. Results (1) With decreasing cutoff velocity, tSNR and PWS increased. However, undesired tissue labeling occurred at low cutoff velocities (≤ 5.4 cm/s). (2) Labeling gradient orientation had little effect on tSNR and PWS. (3) For single VSASL high signal appeared in the kidney pedicle at PLD < 800 ms, and tSNR and PWS decreased with increasing PLD. For dual VSASL, maximum tSNR occurred at PLD = 1200 ms. Average cortical RBF measured with dual VSASL (264 ± 34 mL/min/100 g) at a cutoff velocity of 5.4 cm/s, and feet‐head labeling was slightly lower than with pseudo‐continuous ASL (283 ± 55 mL/min/100 g). Conclusion With well‐chosen sequence parameters, tissue labeling induced by respiratory motion can be minimized, allowing to obtain good quality RBF maps using planning‐free labeling with dual VSASL.
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Affiliation(s)
- Isabell K Bones
- Center for Image Sciences, University Medical Center Utrecht, Utrecht, the Netherlands
| | - Suzanne L Franklin
- Center for Image Sciences, University Medical Center Utrecht, Utrecht, the Netherlands.,C.J. Gorter Center for High Field MRI, Department of Radiology, Leiden University Medical Center, Leiden, the Netherlands
| | - Anita A Harteveld
- Center for Image Sciences, University Medical Center Utrecht, Utrecht, the Netherlands
| | - Matthias J P van Osch
- C.J. Gorter Center for High Field MRI, Department of Radiology, Leiden University Medical Center, Leiden, the Netherlands
| | - Jeroen Hendrikse
- Department of Radiology, University Medical Center Utrecht, Utrecht, the Netherlands
| | - Chrit Moonen
- Center for Image Sciences, University Medical Center Utrecht, Utrecht, the Netherlands
| | - Marijn van Stralen
- Center for Image Sciences, University Medical Center Utrecht, Utrecht, the Netherlands
| | - Clemens Bos
- Center for Image Sciences, University Medical Center Utrecht, Utrecht, the Netherlands
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Werner R, Sentker T, Madesta F, Schwarz A, Vornehm M, Gauer T, Hofmann C. Intelligent 4D CT sequence scanning (i4DCT): First scanner prototype implementation and phantom measurements of automated breathing signal-guided 4D CT. Med Phys 2020; 47:2408-2412. [PMID: 32115724 DOI: 10.1002/mp.14106] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Revised: 02/05/2020] [Accepted: 02/20/2020] [Indexed: 11/05/2022] Open
Abstract
PURPOSE Four-dimensional (4D) computed tomography (CT) imaging is an essential part of current 4D radiotherapy treatment planning workflows, but clinical 4D CT images are often affected by artifacts. The artifacts are mainly caused by breathing irregularity during data acquisition, which leads to projection data coverage issues for currently available commercial 4D CT protocols. It was proposed to improve projection data coverage by online respiratory signal analysis and signal-guided CT tube control, but related work was always theoretical and presented as pure in silico studies. The present work demonstrates a first CT prototype implementation along with respective phantom measurements for the recently introduced intelligent 4D CT (i4DCT) sequence scanning concept (https://doi.org/10.1002/mp.13632). METHODS Intelligent 4D CT was implemented on the Siemens SOMATOM go platform. Four-dimensional CT measurements were performed using the CIRS motion phantom. Motion curves were programmed to systematically vary from regular to very irregular, covering typical irregular patterns that are known to result in image artifacts using standard 4D CT imaging protocols. Corresponding measurements were performed using i4DCT and routine spiral 4D CT with similar imaging parameters (e.g., mAs setting and gantry rotation time, retrospective ten-phase reconstruction) to allow for a direct comparison of the image data. RESULTS Following technological implementation of i4DCT on the clinical CT scanner platform, 4D CT motion artifacts were significantly reduced for all investigated levels of breathing irregularity when compared to routine spiral 4D CT scanning. CONCLUSIONS The present study confirms feasibility of fully automated respiratory signal-guided 4D CT scanning by means of a first implementation of i4DCT on a CT scanner. The measurements thereby support the conclusions of respective in silico studies and demonstrate that respiratory signal-guided 4D CT (here: i4DCT) is ready for integration into clinical CT scanners.
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Affiliation(s)
- René Werner
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.,Center for Biomedical Artificial Intelligence (bAIome), University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany
| | - Thilo Sentker
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany.,Department of Radiotherapy and Radio-Oncology, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany
| | - Frederic Madesta
- Department of Computational Neuroscience, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany
| | - Annette Schwarz
- Friedrich-Alexander-Universität Erlangen, 91504, Erlangen, Germany.,Siemens Healthcare GmbH, 91301, Forchheim, Germany
| | - Marc Vornehm
- Friedrich-Alexander-Universität Erlangen, 91504, Erlangen, Germany.,Siemens Healthcare GmbH, 91301, Forchheim, Germany
| | - Tobias Gauer
- Department of Radiotherapy and Radio-Oncology, University Medical Center Hamburg-Eppendorf, 20246, Hamburg, Germany
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Zhang J, Srivastava S, Wang C, Beckham T, Johnson C, Dutta P, Shepherd A, Mechalakos J, Hunt M, Wu A, Rimner A, Li G. Clinical evaluation of 4D MRI in the delineation of gross and internal tumor volumes in comparison with 4DCT. J Appl Clin Med Phys 2020; 20:51-60. [PMID: 31538719 PMCID: PMC6753727 DOI: 10.1002/acm2.12699] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Revised: 06/15/2019] [Accepted: 07/23/2019] [Indexed: 02/06/2023] Open
Abstract
Purpose To evaluate clinical utility of respiratory‐correlated (RC) four‐dimensional magnetic resonance imaging (4DMRI) for lung tumor delineation and motion assessment, in comparison with the current clinical standard of 4D computed tomography (4DCT). Methods and Materials A prospective T2‐weighted (T2w) RC‐4DMRI technique was applied to acquire coronal 4DMRI images for 14 lung cancer patients (16 lesions) during free breathing (FB) under an IRB‐approved protocol, together with a breath‐hold (BH) T1w 3DMRI and axial 4DMRI. Clinical simulation CT and 4DCT were acquired within 2 h. An internal navigator was applied to trigger amplitude‐binned 4DMRI acquisition whereas a bellows or real‐time position management (RPM) was used in the 4DCT reconstruction. Six radiation oncologists manually delineated the gross and internal tumor volumes (GTV and ITV) in 399 3D images using programmed clinical workflows under a tumor delineation guideline. The ITV was the union of GTVs within the breathing cycle without margin. Average GTV and motion range were assessed and ITV variation between 4DMRI and 4DCT was evaluated using the Dice similarity index, mean distance agreement (MDA), and volume difference. Results The mean tumor volume is similar between 4DCT (GTV4DCT = 1.0, as the reference) and T2w‐4DMRI (GTVT2wMR = 0.97), but smaller in T1w MRI (GTVT1wMR = 0.76), suggesting possible peripheral edema around the tumor. Average GTV variation within the breathing cycle (22%) in 4DMRI is slightly greater than 4DCT (17%). GTV motion variation (−4 to 12 mm) and ITV variation (∆VITV=−25 to 95%) between 4DCT and 4DMRI are large, confirmed by relatively low ITV similarity (Dice = 0.72 ± 0.11) and large MDA = 2.9 ± 1.5 mm. Conclusion Average GTVs are similar between T2w‐4DMRI and 4DCT, but smaller by 25% in T1w BH MRI. Physician training and breathing coaching may be necessary to reduce ITV variability between 4DMRI and 4DCT. Four‐dimensional magnetic resonance imaging is a promising and viable technique for clinical lung tumor delineation and motion assessment.
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Affiliation(s)
- Jingjing Zhang
- Department of Radiation Oncology, Zhongshan Hospital of Sun Yat-Sen University, Zhongshan, China.,Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Shreya Srivastava
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Chunyu Wang
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Thomas Beckham
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Christopher Johnson
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Pinaki Dutta
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Annemarie Shepherd
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - James Mechalakos
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Margie Hunt
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Abraham Wu
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Andreas Rimner
- Department of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
| | - Guang Li
- Department of Medical Physics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA
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Roland T. Motion Artifact Suppression for Insulated EMG to Control Myoelectric Prostheses. Sensors (Basel) 2020; 20:E1031. [PMID: 32075031 DOI: 10.3390/s20041031] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 02/07/2020] [Accepted: 02/10/2020] [Indexed: 11/16/2022]
Abstract
Myoelectric prostheses help amputees to regain independence and a higher quality of life. These prostheses are controlled by electromyography, which measures an electrical signal at the skin surface during muscle contractions. In this contribution, the electromyography is measured with innovative flexible insulated sensors, which separate the skin and the sensor area by a dielectric layer. Electromyography sensors, and biosignal sensors in general, are striving for higher robustness against motion artifacts, which are a major obstacle in real-world environment. The motion artifact suppression algorithms presented in this article, prevent the activation of the prosthesis drive during artifacts, thereby achieving a substantial performance boost. These algorithms classify the signal into muscle contractions and artifacts. Therefore, new time domain features, such as Mean Crossing Rate are introduced and well-established time domain features (e.g., Zero-Crossing Rate, Slope Sign Change) are modified and implemented. Various artificial intelligence models, which require low calculation resources for an application in a wearable device, were investigated. These models are neural networks, recurrent neural networks, decision trees and logistic regressions. Although these models are designed for a low-power real-time embedded system, high accuracies in discriminating artifacts to contractions of up to 99.9% are achieved. The models were implemented and trained for fast response leading to a high performance in real-world environment. For highest accuracies, recurrent neural networks are suggested and for minimum runtime ( 0.99-1.15 μ s), decision trees are preferred.
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50
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Xiong F, Chen D, Huang M. A Wavelet Adaptive Cancellation Algorithm Based on Multi-Inertial Sensors for the Reduction of Motion Artifacts in Ambulatory ECGs. Sensors (Basel) 2020; 20:s20040970. [PMID: 32054066 PMCID: PMC7071113 DOI: 10.3390/s20040970] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 02/07/2020] [Accepted: 02/10/2020] [Indexed: 11/16/2022]
Abstract
Wearable electrocardiogram (ECG) devices are universally used around the world for patients who have cardiovascular disease (CVD). At present, how to suppress motion artifacts is one of the most challenging issues in the field of physiological signal processing. In this paper, we propose an adaptive cancellation algorithm based on multi-inertial sensors to suppress motion artifacts in ambulatory ECGs. Firstly, this method collects information related to the electrode motion through multi-inertial sensors. Then, the part that is not related to the electrode motion is removed through wavelet transform, which improves the correlation of the reference input signal. In this way, the ability of the adaptive cancellation algorithm to remove motion artifacts is improved in the ambulatory ECG. Subsequent experimentation demonstrated that the wavelet adaptive cancellation algorithm based on multi-inertial sensors can effectively remove motion artifacts in ambulatory ECGs.
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