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Lisonkova S, Geoffrion R, Sanaee M, Muraca GM, Wen Q, Yong PJ, Larouche M, Cundiff GW. Regional Variation and Temporal Trends in Surgery for Pelvic Organ Prolapse in Canada, 2004-2014. JOURNAL OF OBSTETRICS AND GYNAECOLOGY CANADA 2020; 42:846-852.e5. [PMID: 32173237 DOI: 10.1016/j.jogc.2019.12.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Revised: 12/20/2019] [Accepted: 12/23/2019] [Indexed: 11/16/2022]
Abstract
OBJECTIVES We sought to examine temporal trends in pelvic organ prolapse (POP) surgery in Canada. METHODS In this observational cross-sectional study, we used diagnostic and procedure codes from all hospitalizations and outpatient clinic visits in Canada (excluding Québec) from 2004 to 2014 to identify and analyze data on POP surgery. RESULTS There were 204 301 POP surgery visits from 2004 to 2014, and the rate of POP surgery declined from 19.3 to 16.0 per 10 000 women during this period. The rates of "native tissue reconstructive repair" and "hysterectomy without other procedure" declined from 15.0 to 12.8 per 10 000 women and 2.6 to 1.6 per 10 000 women, respectively. The rate of obliteration increased from 0.1 to 0.3 per 10 000 women (all P values for trend <0.01). Mesh procedures increased from 1.6 per 10 000 women in 2004 to 2.4 per 10 000 women in 2007 and 2008, and then declined to 1.3 per 10 000 women in 2014. Reconstructive mesh surgery using an abdominal open approach declined, while laparoscopic procedures increased over the period examined. CONCLUSION The rates of POP surgery declined in Canada between 2004 and 2014. An increase was observed in obliteration procedures and in laparoscopic vaginal suspension and fixation with mesh.
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Ábrego ME, Acuña-Perales N, Alfaro-Shigueto J, Azócar J, Barragán Rocha AR, Baquero A, Cotto A, Darquea J, de Paz N, Donoso M, Dutton PH, Fonseca L, Gadea V, García D, Genovart M, Jimenez A, del Rosario Juárez M, López Sánchez KC, Mangel JC, Martínez Suzano ML, Miranda C, Ocampo E, Ordaz Becerra A, Ortiz-Alvarez C, Paladino FV, Pasara-Polack A, Pingo S, Piedra Chacón R, Quiñones J, Rguez-Baron JM, Salas Jiménez JC, Salazar H, Santidrián Tomillo P, Sarti Martínez AL, Spotila JR, Tavera A, Urteaga J, Vallejo F, Velez E, Wallace BP, Williard AS, Zárate PM. Enhanced, coordinated conservation efforts required to avoid extinction of critically endangered Eastern Pacific leatherback turtles. Sci Rep 2020; 10:4772. [PMID: 32179757 PMCID: PMC7075994 DOI: 10.1038/s41598-020-60581-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Accepted: 02/11/2020] [Indexed: 11/09/2022] Open
Abstract
Failure to improve the conservation status of endangered species is often related to inadequate allocation of conservation resources to highest priority issues. Eastern Pacific (EP) leatherbacks are perhaps the most endangered sea turtle population in the world, and continue on a path to regional extinction. To provide coherent, regional conservation targets, we developed a population viability analysis and examined hypothetical scenarios describing effects of conservation activities that either reduced mortality or increased production of hatchlings (or both). Under status quo conditions, EP leatherbacks will be extirpated in <60 yr. To ensure a positive, long-term population trajectory, conservation efforts must increase adult survivorship (i.e., reduce adult mortality) by ≥20%, largely through reduction of fisheries bycatch mortality. Positive trajectories can be accelerated by increased production of hatchlings through enhanced nest protection and treatment. We estimate that these efforts must save approximately 200-260 adult and subadult leatherbacks and produce approximately 7,000-8,000 more hatchlings annually. Critically, reductions in late-stage mortality must begin within 5 years and reach 20% overall within the next 10-15 years to ensure population stabilization and eventual increase. These outcomes require expanded, sustained, coordinated, high-priority efforts among several entities working at multiple scales. Fortunately, such efforts are underway.
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678
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Paula AJ, Hwang G, Koo H. Dynamics of bacterial population growth in biofilms resemble spatial and structural aspects of urbanization. Nat Commun 2020; 11:1354. [PMID: 32170131 PMCID: PMC7070081 DOI: 10.1038/s41467-020-15165-4] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2019] [Accepted: 02/13/2020] [Indexed: 12/13/2022] Open
Abstract
Biofilms develop from bacteria bound on surfaces that grow into structured communities (microcolonies). Although surface topography is known to affect bacterial colonization, how multiple individual settlers develop into microcolonies simultaneously remains underexplored. Here, we use multiscale population-growth and 3D-morphometric analyses to assess the spatiotemporal development of hundreds of bacterial colonizers towards submillimeter-scale microcolony communities. Using an oral bacterium (Streptococcus mutans), we find that microbial cells settle on the surface randomly under sucrose-rich conditions, regardless of surface topography. However, only a subset of colonizers display clustering behavior and growth following a power law. These active colonizers expand three-dimensionally by amalgamating neighboring bacteria into densely populated microcolonies. Clustering and microcolony assembly are dependent on exopolysaccharides, while population growth dynamics and spatial structure are affected by cooperative or antagonistic microbes. Our work suggests that biofilm assembly resembles certain spatial-structural features of urbanization, where population growth and expansion can be influenced by type of settlers, neighboring cells, and further community merging and scaffolding occurring at various scales.
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679
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Fish I, Stenfeldt C, Palinski RM, Pauszek SJ, Arzt J. Into the Deep (Sequence) of the Foot-and-Mouth Disease Virus Gene Pool: Bottlenecks and Adaptation during Infection in Naïve and Vaccinated Cattle. Pathogens 2020; 9:pathogens9030208. [PMID: 32178297 PMCID: PMC7157448 DOI: 10.3390/pathogens9030208] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Revised: 03/06/2020] [Accepted: 03/09/2020] [Indexed: 12/11/2022] Open
Abstract
Foot-and-mouth disease virus (FMDV) infects hosts as a population of closely related viruses referred to as a quasispecies. The behavior of this quasispecies has not been described in detail in natural host species. In this study, virus samples collected from vaccinated and non-vaccinated cattle up to 35 days post-experimental infection with FMDV A24-Cruzeiro were analyzed by deep-sequencing. Vaccination induced significant differences compared to viruses from non-vaccinated cattle in substitution rates, entropy, and evidence for adaptation. Genomic variation detected during early infection reflected the diversity inherited from the source virus (inoculum), whereas by 12 days post infection, dominant viruses were defined by newly acquired mutations. Mutations conferring recognized fitness gain occurred and were associated with selective sweeps. Persistent infections always included multiple FMDV subpopulations, suggesting distinct foci of infection within the nasopharyngeal mucosa. Subclinical infection in vaccinated cattle included very early bottlenecks associated with reduced diversity within virus populations. Viruses from both animal cohorts contained putative antigenic escape mutations. However, these mutations occurred during later stages of infection, at which time transmission is less likely to occur. This study improves upon previously published work by analyzing deep sequences of samples, allowing for detailed characterization of FMDV populations over time within multiple hosts.
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680
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Abong'o B, Gimnig JE, Torr SJ, Longman B, Omoke D, Muchoki M, Ter Kuile F, Ochomo E, Munga S, Samuels AM, Njagi K, Maas J, Perry RT, Fornadel C, Donnelly MJ, Oxborough RM. Impact of indoor residual spraying with pirimiphos-methyl (Actellic 300CS) on entomological indicators of transmission and malaria case burden in Migori County, western Kenya. Sci Rep 2020; 10:4518. [PMID: 32161302 PMCID: PMC7066154 DOI: 10.1038/s41598-020-61350-2] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2019] [Accepted: 02/25/2020] [Indexed: 11/16/2022] Open
Abstract
Indoor residual spraying (IRS) of insecticides is a major vector control strategy for malaria prevention. We evaluated the impact of a single round of IRS with the organophosphate, pirimiphos-methyl (Actellic 300CS), on entomological and parasitological parameters of malaria in Migori County, western Kenya in 2017, in an area where primary vectors are resistant to pyrethroids but susceptible to the IRS compound. Entomological monitoring was conducted by indoor CDC light trap, pyrethrum spray catches (PSC) and human landing collection (HLC) before and after IRS. The residual effect of the insecticide was assessed monthly by exposing susceptible An. gambiae s.s. Kisumu strain to sprayed surfaces in cone assays and measuring mortality at 24 hours. Malaria case burden data were extracted from laboratory records of four health facilities within the sprayed area and two adjacent unsprayed areas. IRS was associated with reductions in An. funestus numbers in the intervention areas compared to non-intervention areas by 88% with light traps (risk ratio [RR] 0.12, 95% CI 0.07-0.21, p < 0.001) and 93% with PSC collections (RR = 0.07, 0.03-0.17, p < 0.001). The corresponding reductions in the numbers of An. arabiensis collected by PSC were 69% in the intervention compared to the non-intervention areas (RR = 0.31, 0.14-0.68, p = 0.006), but there was no significant difference with light traps (RR = 0.45, 0.21-0.96, p = 0.05). Before IRS, An. funestus accounted for over 80% of Anopheles mosquitoes collected by light trap and PSC in all sites. After IRS, An. arabiensis accounted for 86% of Anopheles collected by PSC and 66% by CDC light trap in the sprayed sites while the proportion in non-intervention sites remained unchanged. No sporozoite infections were detected in intervention areas after IRS and biting rates by An. funestus were reduced to near zero. Anopheles funestus and An. arabiensis were fully susceptible to pirimiphos-methyl and resistant to pyrethroids. The residual effect of Actellic 300CS lasted ten months on mud and concrete walls. Malaria case counts among febrile patients within IRS areas was lower post- compared to pre-IRS by 44%, 65% and 47% in Rongo, Uriri and Nyatike health facilities respectively. A single application of IRS with Actellic 300CS in Migori County provided ten months protection and resulted in the near elimination of the primary malaria vector An. funestus and a corresponding reduction of malaria case count among out-patients. The impact was less on An. arabiensis, most likely due to their exophilic nature.
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681
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Condylis C, Lowet E, Ni J, Bistrong K, Ouellette T, Josephs N, Chen JL. Context-Dependent Sensory Processing across Primary and Secondary Somatosensory Cortex. Neuron 2020; 106:515-525.e5. [PMID: 32164873 DOI: 10.1016/j.neuron.2020.02.004] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 11/11/2019] [Accepted: 02/06/2020] [Indexed: 12/16/2022]
Abstract
To interpret the environment, our brain must evaluate external stimuli against internal representations from past experiences. How primary (S1) and secondary (S2) somatosensory cortices process stimuli depending on recent experiences is unclear. Using simultaneous multi-area population imaging of projection neurons and focal optogenetic inactivation, we studied mice performing a whisker-based working memory task. We find that activity reflecting a current stimulus, the recollection of a previous stimulus (cued recall), and the stimulus category are distributed across S1 and S2. Despite this overlapping representation, S2 is important for processing cued recall responses and transmitting these responses to S1. S2 network properties differ from S1, wherein S2 persistently encodes cued recall and the stimulus category under passive conditions. Although both areas encode the stimulus category, only information in S1 is important for task performance through pathways that do not necessarily include S2. These findings reveal both distributed and segregated roles for S1 and S2 in context-dependent sensory processing.
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682
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Porras MF, Navas CA, Marden JH, Mescher MC, De Moraes CM, Pincebourde S, Sandoval-Mojica A, Raygoza-Garay JA, Holguin GA, Rajotte EG, Carlo TA. Enhanced heat tolerance of viral-infected aphids leads to niche expansion and reduced interspecific competition. Nat Commun 2020; 11:1184. [PMID: 32132537 PMCID: PMC7055324 DOI: 10.1038/s41467-020-14953-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 02/13/2020] [Indexed: 01/07/2023] Open
Abstract
Vector-borne pathogens are known to alter the phenotypes of their primary hosts and vectors, with implications for disease transmission as well as ecology. Here we show that a plant virus, barley yellow dwarf virus, increases the surface temperature of infected host plants (by an average of 2 °C), while also significantly enhancing the thermal tolerance of its aphid vector Rhopalosiphum padi (by 8 °C). This enhanced thermal tolerance, which was associated with differential upregulation of three heat-shock protein genes, allowed aphids to occupy higher and warmer regions of infected host plants when displaced from cooler regions by competition with a larger aphid species, R. maidis. Infection thereby led to an expansion of the fundamental niche of the vector. These findings show that virus effects on the thermal biology of hosts and vectors can influence their interactions with one another and with other, non-vector organisms.
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683
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Abstract
Epidemics are highly unpredictable, and so are real-world population dynamics. In this paper, we examine a dynamical model of an ecosystem with one predator and two prey species of which one carries a disease. We find that the system behaves chaotically for a wide range of parameters. Using the allometric mass scaling of animal and disease lifetimes, we predict chaos if (a) the disease is infectious enough to persist, and (b) it affects the larger prey species. This provides another example of chaos in a Lotka-Volterra system and a possible explanation for the apparent randomness of epizootic outbreaks.
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684
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Wilkin S, Ventresca Miller A, Miller BK, Spengler RN, Taylor WTT, Fernandes R, Hagan RW, Bleasdale M, Zech J, Ulziibayar S, Myagmar E, Boivin N, Roberts P. Economic Diversification Supported the Growth of Mongolia's Nomadic Empires. Sci Rep 2020; 10:3916. [PMID: 32127564 PMCID: PMC7054399 DOI: 10.1038/s41598-020-60194-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Accepted: 02/06/2020] [Indexed: 11/23/2022] Open
Abstract
Populations in Mongolia from the late second millennium B.C.E. through the Mongol Empire are traditionally assumed, by archaeologists and historians, to have maintained a highly specialized horse-facilitated form of mobile pastoralism. Until recently, a dearth of direct evidence for prehistoric human diet and subsistence economies in Mongolia has rendered systematic testing of this view impossible. Here, we present stable carbon and nitrogen isotope measurements of human bone collagen, and stable carbon isotope analysis of human enamel bioapatite, from 137 well-dated ancient Mongolian individuals spanning the period c. 4400 B.C.E. to 1300 C.E. Our results demonstrate an increase in consumption of C4 plants beginning at c. 800 B.C.E., almost certainly indicative of millet consumption, an interpretation supported by archaeological evidence. The escalating scale of millet consumption on the eastern Eurasian steppe over time, and an expansion of isotopic niche widths, indicate that historic Mongolian empires were supported by a diversification of economic strategies rather than uniform, specialized pastoralism.
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685
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McInnes MG, Burns NM, Hopkins CR, Henderson GP, McNeill DC, Bailey DM. A new model study species: high accuracy of discrimination between individual freckled hawkfish (Paracirrhites forsteri) using natural markings. JOURNAL OF FISH BIOLOGY 2020; 96:831-834. [PMID: 31984497 DOI: 10.1111/jfb.14255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2019] [Accepted: 01/07/2020] [Indexed: 06/10/2023]
Abstract
Variations between distinct natural markings of freckled hawkfish (Paracirrhites forsteri) could allow in situ identification of individuals from underwater photography. Receiver operating characteristic analysis was used to assess the ability of the Interactive Individual Identification System (I3 S) software to assist in discriminating between images of P. forsteri individuals. This study's results show the high discriminant ability of I3 S to differentiate between unlike individuals and identify images of the same individual. The ability to use automatic computer-aided assistance in the study of this species will enable future research to explore behaviour and movements of individuals in the wild.
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686
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Nordén J, Harrison PJ, Mair L, Siitonen J, Lundström A, Kindvall O, Snäll T. Occupancy versus colonization-extinction models for projecting population trends at different spatial scales. Ecol Evol 2020; 10:3079-3089. [PMID: 32211178 PMCID: PMC7083660 DOI: 10.1002/ece3.6124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Accepted: 02/03/2020] [Indexed: 11/25/2022] Open
Abstract
Understanding spatiotemporal population trends and their drivers is a key aim in population ecology. We further need to be able to predict how the dynamics and sizes of populations are affected in the long term by changing landscapes and climate. However, predictions of future population trends are sensitive to a range of modeling assumptions. Deadwood-dependent fungi are an excellent system for testing the performance of different predictive models of sessile species as these species have different rarity and spatial population dynamics, the populations are structured at different spatial scales, and they utilize distinct substrates. We tested how the projected large-scale occupancies of species with differing landscape-scale occupancies are affected over the coming century by different modeling assumptions. We compared projections based on occupancy models against colonization-extinction models, conducting the modeling at alternative spatial scales and using fine- or coarse-resolution deadwood data. We also tested effects of key explanatory variables on species occurrence and colonization-extinction dynamics. The hierarchical Bayesian models applied were fitted to an extensive repeated survey of deadwood and fungi at 174 patches. We projected higher occurrence probabilities and more positive trends using the occupancy models compared to the colonization-extinction models, with greater difference for the species with lower occupancy, colonization rate, and colonization:extinction ratio than for the species with higher estimates of these statistics. The magnitude of future increase in occupancy depended strongly on the spatial modeling scale and resource resolution. We encourage using colonization-extinction models over occupancy models, modeling the process at the finest resource-unit resolution that is utilizable by the species, and conducting projections for the same spatial scale and resource resolution at which the model fitting is conducted. Further, the models applied should include key variables driving the metapopulation dynamics, such as the availability of suitable resource units, habitat quality, and spatial connectivity.
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687
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Preston DL, Sauer EL. Infection pathology and competition mediate host biomass overcompensation from disease. Ecology 2020; 101:e03000. [PMID: 32012250 DOI: 10.1002/ecy.3000] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Revised: 12/23/2019] [Accepted: 01/23/2020] [Indexed: 11/08/2022]
Abstract
Predators can increase the biomass of their prey, particularly when prey life stages differ in competitive ability and predation is stage specific. Akin to predators, parasites influence host population sizes and engage in stage-structured interactions, yet whether parasites can increase host population biomass remains relatively unexplored. Using a stage-structured consumer-resource model and a mesocosm experiment with snails and castrating trematodes, we examined responses of host biomass to changes in infection prevalence under variation in host pathology and resource competition. Equilibrium adult host biomass increased with infection prevalence in the model when parasites castrated hosts and adults were superior competitors to juveniles. Juvenile biomass increased with infection prevalence whether parasites caused mortality or castration, but only when juveniles were superior competitors. In mesocosms, increases in infection by castrating trematodes reduced snail egg production, juvenile abundance, and adult survival. At high competition, juvenile growth and total biomass increased with infection prevalence due to competitive release. At low competition, juvenile biomass decreased with infection due to reduced reproduction. These results highlight how disease-induced biomass overcompensation depends on infection pathology, resource availability, and competitive interactions within and between host life stages. Considering such characteristics may benefit biocontrol efforts using parasites.
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688
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Easterday WR, Ponciano JM, Gomez JP, Van Ert MN, Hadfield T, Bagamian K, Blackburn JK, Stenseth NC, Turner WC. Coalescence modeling of intrainfection Bacillus anthracis populations allows estimation of infection parameters in wild populations. Proc Natl Acad Sci U S A 2020; 117:4273-4280. [PMID: 32054783 PMCID: PMC7049103 DOI: 10.1073/pnas.1920790117] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Bacillus anthracis, the etiological agent of anthrax, is a well-established model organism. For B. anthracis and most other infectious diseases, knowledge regarding transmission and infection parameters in natural systems, in large part, comprises data gathered from closely controlled laboratory experiments. Fatal, natural anthrax infections transmit the bacterium through new host-pathogen contacts at carcass sites, which can occur years after death of the previous host. For the period between contact and death, all of our knowledge is based upon experimental data from domestic livestock and laboratory animals. Here we use a noninvasive method to explore the dynamics of anthrax infections, by evaluating the terminal diversity of B. anthracis in anthrax carcasses. We present an application of population genetics theory, specifically, coalescence modeling, to intrainfection populations of B. anthracis to derive estimates for the duration of the acute phase of the infection and effective population size converted to the number of colony-forming units establishing infection in wild plains zebra (Equus quagga). Founding populations are small, a few colony-forming units, and infections are rapid, lasting roughly between 1 d and 3 d in the wild. Our results closely reflect experimental data, showing that small founding populations progress acutely, killing the host within days. We believe this method is amendable to other bacterial diseases from wild, domestic, and human systems.
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689
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Xu P, Marsafari M, Zha J, Koffas M. Microbial Coculture for Flavonoid Synthesis. Trends Biotechnol 2020; 38:686-688. [PMID: 32497514 DOI: 10.1016/j.tibtech.2020.01.008] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Revised: 01/29/2020] [Accepted: 01/29/2020] [Indexed: 11/26/2022]
Abstract
Flavonoids are plant-derived natural products with human health-promoting benefits. The modularity and complexity of the flavonoid biosynthetic pathway allow us to leverage the metabolic characteristics of distinct microbial hosts and install structural functionalities beyond what monocultures can achieve. We discuss the promising future of applying microbial cocultures to improve the cost-efficiency and diversity of flavonoid biosynthesis.
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690
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Kate Grabowski M, Lessler J, Bazaale J, Nabukalu D, Nankinga J, Nantume B, Ssekasanvu J, Reynolds SJ, Ssekubugu R, Nalugoda F, Kigozi G, Kagaayi J, Santelli JS, Kennedy C, Wawer MJ, Serwadda D, Chang LW, Gray RH. Migration, hotspots, and dispersal of HIV infection in Rakai, Uganda. Nat Commun 2020; 11:976. [PMID: 32080169 PMCID: PMC7033206 DOI: 10.1038/s41467-020-14636-y] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Accepted: 01/18/2020] [Indexed: 01/11/2023] Open
Abstract
HIV prevalence varies markedly throughout Africa, and it is often presumed areas of higher HIV prevalence (i.e., hotspots) serve as sources of infection to neighboring areas of lower prevalence. However, the small-scale geography of migration networks and movement of HIV-positive individuals between communities is poorly understood. Here, we use population-based data from ~22,000 persons of known HIV status to characterize migratory patterns and their relationship to HIV among 38 communities in Rakai, Uganda with HIV prevalence ranging from 9 to 43%. We find that migrants moving into hotspots had significantly higher HIV prevalence than migrants moving elsewhere, but out-migration from hotspots was geographically dispersed, contributing minimally to HIV burden in destination locations. Our results challenge the assumption that high prevalence hotspots are drivers of transmission in regional epidemics, instead suggesting that migrants with high HIV prevalence, particularly women, selectively migrate to these areas.
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691
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Dalle Luche G, Boggs ASP, Kucklick JR, Groß J, Hawker DW, Bengtson Nash S. Androstenedione and testosterone but not progesterone are potential biomarkers of pregnancy in Humpback Whales (Megaptera novaeangliae) approaching parturition. Sci Rep 2020; 10:2954. [PMID: 32075989 PMCID: PMC7031522 DOI: 10.1038/s41598-020-58933-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Accepted: 11/22/2019] [Indexed: 11/09/2022] Open
Abstract
The blubber steroid hormone profiles of 52 female humpback whales migrating along the east coast of Australia were investigated for seasonal endocrine changes associated with reproduction. Individuals were randomly sampled during two stages of the annual migration: before reaching the breeding grounds (northward migration; June/July), and after departing from the breeding grounds (southward migration; September/October). Assignment of reproductive status of the sampled individuals was based on season, single-hormone ranks and multi-variate analysis of the hormonal profiles. High concentrations of progesterone (>19 ng/g, wet weight), recognised as an indicator of pregnancy in this species, were only detected in one sample. However, the androgens, testosterone and androstenedione were measured in unusually high concentrations (1.6-12 and 7.8-40 ng/g wet weight, respectively) in 36% of the females approaching the breeding grounds. The absence of a strong accompanying progesterone signal in these animals raises the possibility of progesterone withdrawal prior to parturition. As seen with other cetacean species, testosterone and androstenedione could be markers of near-term pregnancy in humpback whales. Confirmation of these androgens as alternate biomarkers of near-term pregnancy would carry implications for improved monitoring of the annual fecundity of humpback whales via non-lethal and minimally invasive methods.
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692
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Chang FH, Cardinale BJ. Intra-guild predation (IGP) can increase or decrease prey density depending on the strength of IGP. Ecology 2020; 101:e03012. [PMID: 32065659 DOI: 10.1002/ecy.3012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 01/01/2020] [Accepted: 01/03/2020] [Indexed: 11/10/2022]
Abstract
In consumer communities, intra-guild predation (IGP) is a commonly observed interaction that is widely believed to increase resource density. However, some recent theoretical work predicts that resource density should first decrease, and then increase as the strength of IGP increases. This occurs because weak to intermediate IGP increases the IG predator density more than it reduces the IG prey density, so that weak to intermediate IGP leads to the lowest resource density compared to weak or strong IGP. We test this prediction that basal resource density would first decrease and then increase as the strength of IGP increase. We used a well-studied system with two protozoa species engaged in IGP and three bacteria species as the basal resources. We experimentally manipulated the percentage of the IG prey population that was available to an IG predator as a proxy for IGP strength. We found that bacterial density first decreased (by ~25%) and then increased (by ~30%) as the strength of IGP increased. Using a modified version of a published IGP model, we were able to explain ~70% of the variation in protozoa and bacterial density. Agreement of the empirical results with model predictions suggests that IGP first increased the IG predator density by consuming a small proportion of the IG prey population, which in turn increased the summed consumer density and decreased the bacterial resource density. As IGP strength increased further, the IG predator became satiated by the IG prey, which then freed the bacterial resource from predation and thus increased bacterial density. Consequently, our work shows that IGP can indeed decrease or increase basal resource density depending on its strength. Consequently, the impacts of IGP on resource density is potentially more complex than previously thought.
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693
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Lahiri S, Reisig DD, Reay-Jones FPF, Greene JK, Carter TE, Mian R, Fallen BD. Soybean Host Plant Resistance to Megacopta cribraria (Hemiptera: Plataspidae) and the Potential Role of Leaf Trichome Density. ENVIRONMENTAL ENTOMOLOGY 2020; 49:88-97. [PMID: 31904078 DOI: 10.1093/ee/nvz158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2019] [Indexed: 06/10/2023]
Abstract
Megacopta cribraria (F.) (Hemiptera: Plataspidae) is an invasive pest of soybean that has spread across the southeastern United States since its initial discovery in 2009 in Georgia. Previous studies in the southeastern states have documented both the population dynamics of this pest and host plant resistance (HPR) among soybean varieties, although the specific mechanisms of HPR remain unknown. The objectives of this study were, therefore, to 1) quantify field resistance to M. cribraria in multiple soybean varieties in two states previously affected by severe M. cribraria infestations, North Carolina (NC) and South Carolina (SC); and 2) study the role of soybean trichome density in imparting resistance against M. cribraria. Soybean variety 'Camp' was least attractive to M. cribraria, through time and locations, suggesting consistent resistance. Other varieties showed variable performance among the locations and sampling dates. A significant difference in trichome density was evident. However, there was no correlation between trichome density and M. cribraria infestation. Compared to a previously published study in the same location, when M. cribraria adults emerging from overwintering dispersed into soybeans, in our study only first-generation adults dispersed into soybeans. Considering the current trend of significantly lower M. cribraria infestation rates in North and South Carolina, this pest may be finally succumbing to indigenous natural enemies and should be managed by incorporating integrated pest management tactics, such as HPR, that help conserve natural enemy populations.
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694
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Davis AJ, Keiter DA, Kierepka EM, Slootmaker C, Piaggio AJ, Beasley JC, Pepin KM. A comparison of cost and quality of three methods for estimating density for wild pig (Sus scrofa). Sci Rep 2020; 10:2047. [PMID: 32029837 PMCID: PMC7004977 DOI: 10.1038/s41598-020-58937-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 01/13/2020] [Indexed: 12/02/2022] Open
Abstract
A critical element in effective wildlife management is monitoring the status of wildlife populations; however, resources to monitor wildlife populations are typically limited. We compared cost effectiveness of three common population estimation methods (i.e. non-invasive DNA sampling, camera sampling, and sampling from trapping) by applying them to wild pigs (Sus scrofa) across three habitats in South Carolina, U.S.A where they are invasive. We used mark-recapture analyses for fecal DNA sampling data, spatially-explicit capture-recapture analyses for camera sampling data, and a removal analysis for removal sampling from trap data. Density estimates were similar across methods. Camera sampling was the least expensive, but had large variances. Fecal DNA sampling was the most expensive, although this technique generally performed well. We examined how reductions in effort by method related to increases in relative bias or imprecision. For removal sampling, the largest cost savings while maintaining unbiased density estimates was from reducing the number of traps. For fecal DNA sampling, a reduction in effort only minimally reduced costs due to the need for increased lab replicates while maintaining high quality estimates. For camera sampling, effort could only be marginally reduced before inducing bias. We provide a decision tree for researchers to help make monitoring decisions.
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695
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Mismatches between demographic niches and geographic distributions are strongest in poorly dispersed and highly persistent plant species. Proc Natl Acad Sci U S A 2020; 117:3663-3669. [PMID: 32029599 PMCID: PMC7035498 DOI: 10.1073/pnas.1908684117] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Forecasts of global change impacts on biodiversity often assume that the current geographical distributions of species match their ecological niches. Here we examine this assumption using an extensive dataset of large-scale variation in demographic rates that enables us to quantify demography-based ecological niches of 26 plant species. Contrasting these niches with the species’ geographic distributions reveals that niche–distribution mismatches can be large and depend on key life-history traits: poorly dispersed species are absent from suitable sites, and species with high persistence ability are present in sites that are currently unsuitable for them. Such niche–distribution mismatches need to be accounted for to improve forecasts of biodiversity dynamics under environmental change. The ecological niche of a species describes the variation in population growth rates along environmental gradients that drives geographic range dynamics. Niches are thus central for understanding and forecasting species’ geographic distributions. However, theory predicts that migration limitation, source–sink dynamics, and time-lagged local extinction can cause mismatches between niches and geographic distributions. It is still unclear how relevant these niche–distribution mismatches are for biodiversity dynamics and how they depend on species life-history traits. This is mainly due to a lack of the comprehensive, range-wide demographic data needed to directly infer ecological niches for multiple species. Here we quantify niches from extensive demographic measurements along environmental gradients across the geographic ranges of 26 plant species (Proteaceae; South Africa). We then test whether life history explains variation in species’ niches and niche–distribution mismatches. Niches are generally wider for species with high seed dispersal or persistence abilities. Life-history traits also explain the considerable interspecific variation in niche–distribution mismatches: poorer dispersers are absent from larger parts of their potential geographic ranges, whereas species with higher persistence ability more frequently occupy environments outside their ecological niche. Our study thus identifies major demographic and functional determinants of species’ niches and geographic distributions. It highlights that the inference of ecological niches from geographical distributions is most problematic for poorly dispersed and highly persistent species. We conclude that the direct quantification of ecological niches from demographic responses to environmental variation is a crucial step toward a better predictive understanding of biodiversity dynamics under environmental change.
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696
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Shoemaker LG, Sullivan LL, Donohue I, Cabral JS, Williams RJ, Mayfield MM, Chase JM, Chu C, Harpole WS, Huth A, HilleRisLambers J, James ARM, Kraft NJB, May F, Muthukrishnan R, Satterlee S, Taubert F, Wang X, Wiegand T, Yang Q, Abbott KC. Integrating the underlying structure of stochasticity into community ecology. Ecology 2020; 101:e02922. [PMID: 31652337 PMCID: PMC7027466 DOI: 10.1002/ecy.2922] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 08/26/2019] [Accepted: 09/10/2019] [Indexed: 01/13/2023]
Abstract
Stochasticity is a core component of ecology, as it underlies key processes that structure and create variability in nature. Despite its fundamental importance in ecological systems, the concept is often treated as synonymous with unpredictability in community ecology, and studies tend to focus on single forms of stochasticity rather than taking a more holistic view. This has led to multiple narratives for how stochasticity mediates community dynamics. Here, we present a framework that describes how different forms of stochasticity (notably demographic and environmental stochasticity) combine to provide underlying and predictable structure in diverse communities. This framework builds on the deep ecological understanding of stochastic processes acting at individual and population levels and in modules of a few interacting species. We support our framework with a mathematical model that we use to synthesize key literature, demonstrating that stochasticity is more than simple uncertainty. Rather, stochasticity has profound and predictable effects on community dynamics that are critical for understanding how diversity is maintained. We propose next steps that ecologists might use to explore the role of stochasticity for structuring communities in theoretical and empirical systems, and thereby enhance our understanding of community dynamics.
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697
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Tan Z, Koh JM, Koonin EV, Cheong KH. Predator Dormancy is a Stable Adaptive Strategy due to Parrondo's Paradox. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2020; 7:1901559. [PMID: 32042555 PMCID: PMC7001654 DOI: 10.1002/advs.201901559] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 08/09/2019] [Indexed: 05/20/2023]
Abstract
Many predators produce dormant offspring to escape harsh environmental conditions, but the evolutionary stability of this adaptation has not been fully explored. Like seed banks in plants, dormancy provides a stable competitive advantage when seasonal variations occur, because the persistence of dormant forms under harsh conditions compensates for the increased cost of producing dormant offspring. However, dormancy also exists in environments with minimal abiotic variation-an observation not accounted for by existing theory. Here it is demonstrated that dormancy can out-compete perennial activity under conditions of extensive prey density fluctuation caused by overpredation. It is shown that at a critical level of prey density fluctuations, dormancy becomes an evolutionarily stable strategy. This is interpreted as a manifestation of Parrondo's paradox: although neither the active nor dormant forms of a dormancy-capable predator can individually out-compete a perennially active predator, alternating between these two losing strategies can paradoxically result in a winning strategy. Parrondo's paradox may thus explain the widespread success of quiescent behavioral strategies such as dormancy, suggesting that dormancy emerges as a natural evolutionary response to the self-destructive tendencies of overpredation and related biological phenomena.
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698
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Block S, Alexander JM, Levine JM. Phenological plasticity is a poor predictor of subalpine plant population performance following experimental climate change. OIKOS 2020; 129:184-193. [PMID: 32001946 DOI: 10.1111/oik.06667] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Phenological shifts, changes in the seasonal timing of life cycle events, are among the best documented responses of species to climate change. However, the consequences of these phenological shifts for population dynamics remain unclear. Population growth could be enhanced if species that advance their phenology benefit from longer growing seasons and gain a pre-emptive advantage in resource competition. However, it might also be reduced if phenological advances increase exposure to stresses, such as herbivores and, in colder climates, harsh abiotic conditions early in the growing season. We exposed subalpine grasslands to ~ 3 K of warming by transplanting intact turfs from 2000 m to 1400 m elevation in the eastern Swiss Alps, with turfs transplanted within the 2000 m site acting as a control. In the first growing season after transplantation, we recorded species' flowering phenology at both elevations. We also measured species' cover change for three consecutive years as a measure of plant performance. We used models to estimate species' phenological plasticity (the response of flowering time to the change in climate) and analysed its relationship with cover changes following climate change. The phenological plasticity of the 18 species in our study varied widely but was unrelated to their changes in cover. Moreover, early- and late-flowering species did not differ in their cover response to warming, nor in the relationship between cover changes and phenological plasticity. These results were replicated in a similar transplant experiment within the same subalpine community, established one year earlier and using larger turfs. We discuss the various ecological processes that can be affected by phenological shifts, and argue why the population-level consequences of these shifts are likely to be species- and context-specific. Our results highlight the importance of testing assumptions about how warming-induced changes in phenotypic traits, like phenology, impact population dynamics.
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699
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Henry EH, Burford Reiskind MO, Land AD, Haddad NM. Maintaining historic disturbance regimes increases species' resilience to catastrophic hurricanes. GLOBAL CHANGE BIOLOGY 2020; 26:798-806. [PMID: 31849159 DOI: 10.1111/gcb.14932] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Revised: 09/20/2019] [Accepted: 11/01/2019] [Indexed: 06/10/2023]
Abstract
As habitat loss and fragmentation, urbanization, and global climate change accelerate, conservation of rare ecosystems increasingly relies on human intervention. However, any conservation strategy is vulnerable to unpredictable, catastrophic events. Whether active management increases or decreases a system's resilience to these events remains unknown. Following Hurricane Irma's landfall in our habitat restoration study sites, we found that rare ecosystems with active, human-imposed management suffered less damage in a hurricane's path than unmanaged systems. At the center of Irma's landfall, we found Croton linearis' (a locally rare plant that is the sole host for two endangered butterfly species) survival and population growth rates in the year of the hurricane were higher in previously managed plots than in un-managed controls. In the periphery of Irma's circulation, the effect of prior management was stronger than that of the hurricane. Maintaining the historical disturbance regime thus increased the resilience of the population to major hurricane disturbance. As climate change increases the probability and intensity of severe hurricanes, human management of disturbance-adapted landscapes will become increasingly important for maintaining populations of threatened species in a storm's path. Doing nothing will accelerate extinction.
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700
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Raj S, Kumar AB, Raghavan R, Dahanukar N. Amazonian invaders in an Asian biodiversity hotspot: Understanding demographics for the management of the armoured sailfin catfish, Pterygoplichthys pardalis in Kerala, India. JOURNAL OF FISH BIOLOGY 2020; 96:549-553. [PMID: 31875320 DOI: 10.1111/jfb.14243] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 12/20/2019] [Indexed: 06/10/2023]
Abstract
Invasion of armoured catfish, Pterygoplichthys spp., is a major threat to global aquatic biodiversity, and developing effective strategies for their control and eradication is both a concern and a research priority. A length-based population assessment of invasive Pterygoplichthys pardalis in southern India, a hotspot for endemic aquatic biodiversity, indicated that rapid growth, high growth performance index and continuous recruitment have aided their successful invasion. Increasing fishing pressure on the adults is not adequate for population management, and only targeting young individuals (<30 cm) will result in overexploitation and population collapse.
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