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76
Pakharukova NA, Nosovskiĭ AM, Pastushkova LK, Trifonova OP, Larina IM. [Choice of statistical approaches and analysis of blood serum proteome profiles in an experiment with 24-hour head-down tilt (-15 degrees)]. AVIAKOSMICHESKAIA I EKOLOGICHESKAIA MEDITSINA = AEROSPACE AND ENVIRONMENTAL MEDICINE 2009;43:60-66. [PMID: 19943525] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
77
Lobanov AV, Hatfield DL, Gladyshev VN. Eukaryotic selenoproteins and selenoproteomes. Biochim Biophys Acta Gen Subj 2009;1790:1424-8. [PMID: 19477234 DOI: 10.1016/j.bbagen.2009.05.014] [Citation(s) in RCA: 208] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2009] [Revised: 04/08/2009] [Accepted: 05/19/2009] [Indexed: 11/19/2022]
78
Radauer C, Bublin M, Wagner S, Mari A, Breiteneder H. Allergens are distributed into few protein families and possess a restricted number of biochemical functions. J Allergy Clin Immunol 2008;121:847-52.e7. [PMID: 18395549 DOI: 10.1016/j.jaci.2008.01.025] [Citation(s) in RCA: 308] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2007] [Revised: 01/22/2008] [Accepted: 01/23/2008] [Indexed: 11/18/2022]
79
Kaluza P, Vingron M, Mikhailov AS. Self-correcting networks: function, robustness, and motif distributions in biological signal processing. CHAOS (WOODBURY, N.Y.) 2008;18:026113. [PMID: 18601515 DOI: 10.1063/1.2945228] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
80
Galvez T, Teruel MN, Heo WD, Jones JT, Kim ML, Liou J, Myers JW, Meyer T. siRNA screen of the human signaling proteome identifies the PtdIns(3,4,5)P3-mTOR signaling pathway as a primary regulator of transferrin uptake. Genome Biol 2008;8:R142. [PMID: 17640392 PMCID: PMC2323231 DOI: 10.1186/gb-2007-8-7-r142] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2007] [Revised: 05/30/2007] [Accepted: 07/19/2007] [Indexed: 02/05/2023]  Open
81
Lopez-Bigas N, De S, Teichmann SA. Functional protein divergence in the evolution of Homo sapiens. Genome Biol 2008;9:R33. [PMID: 18279504 PMCID: PMC2374701 DOI: 10.1186/gb-2008-9-2-r33] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2007] [Revised: 12/24/2007] [Accepted: 02/15/2008] [Indexed: 12/23/2022]  Open
82
Nilsen J, Irwin RW, Gallaher TK, Brinton RD. Estradiol in vivo regulation of brain mitochondrial proteome. J Neurosci 2007;27:14069-77. [PMID: 18094246 PMCID: PMC6673510 DOI: 10.1523/jneurosci.4391-07.2007] [Citation(s) in RCA: 132] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2007] [Accepted: 10/26/2007] [Indexed: 12/20/2022]  Open
83
Küntzer J, Backes C, Blum T, Gerasch A, Kaufmann M, Kohlbacher O, Lenhof HP. BNDB - the Biochemical Network Database. BMC Bioinformatics 2007;8:367. [PMID: 17910766 PMCID: PMC2092437 DOI: 10.1186/1471-2105-8-367] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2007] [Accepted: 10/02/2007] [Indexed: 12/04/2022]  Open
84
Iiizumi G, Sadoya Y, Hino S, Shibuya N, Kawabata H. Proteomic characterization of the site-dependent functional difference in the rat small intestine. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2007;1774:1289-98. [PMID: 17881305 DOI: 10.1016/j.bbapap.2007.07.012] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2007] [Revised: 07/11/2007] [Accepted: 07/20/2007] [Indexed: 11/25/2022]
85
Huang JTJ, Leweke FM, Tsang TM, Koethe D, Kranaster L, Gerth CW, Gross S, Schreiber D, Ruhrmann S, Schultze-Lutter F, Klosterkötter J, Holmes E, Bahn S. CSF metabolic and proteomic profiles in patients prodromal for psychosis. PLoS One 2007;2:e756. [PMID: 17712404 PMCID: PMC1942084 DOI: 10.1371/journal.pone.0000756] [Citation(s) in RCA: 78] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2007] [Accepted: 05/17/2007] [Indexed: 11/18/2022]  Open
86
Matsuoka S, Ballif BA, Smogorzewska A, McDonald ER, Hurov KE, Luo J, Bakalarski CE, Zhao Z, Solimini N, Lerenthal Y, Shiloh Y, Gygi SP, Elledge SJ. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 2007;316:1160-6. [PMID: 17525332 DOI: 10.1126/science.1140321] [Citation(s) in RCA: 2310] [Impact Index Per Article: 135.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
87
Zhang W, Culley DE, Nie L, Scholten JCM. Comparative transcriptome analysis of Desulfovibrio vulgaris grown in planktonic culture and mature biofilm on a steel surface. Appl Microbiol Biotechnol 2007;76:447-57. [PMID: 17571259 DOI: 10.1007/s00253-007-1014-9] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2006] [Revised: 04/23/2007] [Accepted: 04/24/2007] [Indexed: 01/01/2023]
88
Cannataro M, Barla A, Flor R, Jurman G, Merler S, Paoli S, Tradigo G, Veltri P, Furlanello C. A Grid Environment for High-Throughput Proteomics. IEEE Trans Nanobioscience 2007;6:117-23. [PMID: 17695745 DOI: 10.1109/tnb.2007.897495] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
89
van Hellemond JJ, van Balkom BWM, Tielens AGM. Schistosome biology and proteomics: progress and challenges. Exp Parasitol 2007;117:267-74. [PMID: 17577589 DOI: 10.1016/j.exppara.2007.05.004] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2007] [Revised: 05/09/2007] [Accepted: 05/09/2007] [Indexed: 11/28/2022]
90
Webb-Robertson BJM, Peterson ES, Singhal M, Klicker KR, Oehmen CS, Adkins JN, Havre SL. PQuad—a visual analysis platform for proteomic data exploration of microbial organisms. Bioinformatics 2007;23:1705-7. [PMID: 17483503 DOI: 10.1093/bioinformatics/btm132] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
91
Kusch H, Engelmann S, Albrecht D, Morschhäuser J, Hecker M. Proteomic analysis of the oxidative stress response in Candida albicans. Proteomics 2007;7:686-97. [PMID: 17285563 DOI: 10.1002/pmic.200600575] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
92
Havre SL, Webb-Robertson BJ, Shah A, Posse C, Gopalan B, Brockman FJ. Bioinformatic insights from metagenomics through visualization. PROCEEDINGS. IEEE COMPUTATIONAL SYSTEMS BIOINFORMATICS CONFERENCE 2007:341-50. [PMID: 16447991 DOI: 10.1109/csb.2005.19] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
93
Cakir T, Efe C, Dikicioglu D, Hortaçsu A, Kirdar B, Oliver SG. Flux balance analysis of a genome-scale yeast model constrained by exometabolomic data allows metabolic system identification of genetically different strains. Biotechnol Prog 2007;23:320-6. [PMID: 17373823 DOI: 10.1021/bp060272r] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
94
Hajheidari M, Eivazi A, Buchanan BB, Wong JH, Majidi I, Salekdeh GH. Proteomics Uncovers a Role for Redox in Drought Tolerance in Wheat. J Proteome Res 2007;6:1451-60. [PMID: 17343403 DOI: 10.1021/pr060570j] [Citation(s) in RCA: 153] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
95
Berdal A, Lautrou A. [Craniofacial development: genetics and the natural environment. Introduction]. Orthod Fr 2007;78:3-6. [PMID: 17571528 DOI: 10.1051/orthodfr:2007005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
96
de Jong F, Mathesius U, Imin N, Rolfe BG. A proteome study of the proliferation of culturedMedicago truncatula protoplasts. Proteomics 2007;7:722-36. [PMID: 17340587 DOI: 10.1002/pmic.200600530] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
97
Yin L, Tao Y, Zhao K, Shao J, Li X, Liu G, Liu S, Zhu L. Proteomic and transcriptomic analysis of rice mature seed-derived callus differentiation. Proteomics 2007;7:755-68. [PMID: 17340588 DOI: 10.1002/pmic.200600611] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
98
Folkman J. Is angiogenesis an organizing principle in biology and medicine? J Pediatr Surg 2007;42:1-11. [PMID: 17208533 DOI: 10.1016/j.jpedsurg.2006.09.048] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
99
Feuk-Lagerstedt E, Movitz C, Pellmé S, Dahlgren C, Karlsson A. Lipid raft proteome of the human neutrophil azurophil granule. Proteomics 2007;7:194-205. [PMID: 17152095 DOI: 10.1002/pmic.200600482] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
100
Jackman JE, Kotelawala L, Grayhack EJ, Phizicky EM. Identification and Characterization of Modification Enzymes by Biochemical Analysis of the Proteome. Methods Enzymol 2007;425:139-52. [PMID: 17673082 DOI: 10.1016/s0076-6879(07)25006-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
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