Analysis of ambient temperature-responsive transcriptome in shoot apical meristem of heat-tolerant and heat-sensitive broccoli inbred lines during floral head formation

BACKGROUND

Head formation of broccoli (Brassica oleracea var. italica) is greatly reduced under high temperature (22 °C and 27 °C). Broccoli inbred lines that are capable of producing heads at high temperatures in summer are varieties that are unique to Taiwan. However, knowledge of the early-activated pathways of broccoli head formation under high temperature is limited.

RESULTS

We compared heat-tolerant (HT) and heat-sensitive (HS) transcriptome of broccoli under different temperatures. Weighted gene correlation network analysis (WGCNA) revealed that genes involved in calcium signaling pathways, mitogen-activated protein kinase (MAPK) cascades, leucine-rich repeat receptor-like kinases (LRR-RLKs), and genes coding for heat-shock proteins and reactive oxygen species homeostasis shared a similar expression pattern to BoFLC1, which was highly expressed at high temperature (27 °C). Of note, these genes were less expressed in HT than HS broccoli at 22 °C. Co-expression analysis identified a model for LRR-RLKs in survival-reproduction tradeoffs by modulating MAPK- versus phytohormones-signaling during head formation. The difference in head-forming ability in response to heat stress between HT and HS broccoli may result from their differential transcriptome profiles of LRR-RLK genes. High temperature induced JA- as well as suppressed auxin- and cytokinin-related pathways may facilitate a balancing act to ensure fitness at 27 °C. BoFLC1 was less expressed in HT than HS at 22 °C, whereas other FLC homologues were not. Promoter analysis of BoFLC1 showed fewer AT dinucleotide repeats in HT broccoli. These results provide insight into the early activation of stress- or development-related pathways during head formation in broccoli. The identification of the BoFLC1 DNA biomarker may facilitate breeding of HT broccoli.

CONCLUSIONS

In this study, HT and HS broccoli genotypes were used to determine the effect of temperature on head formation by transcriptome profiling. On the basis of the expression pattern of high temperature-associated signaling genes, the HS transcriptome may be involved in stress defense instead of transition to the reproductive phase in response to heat stress. Transcriptome profiling of HT and HS broccoli helps in understanding the molecular mechanisms underlying head-forming capacity and in promoting functional marker-assisted breeding.

Comparison of foliar silicon and selenium on cadmium absorption, compartmentation, translocation and the antioxidant system in Chinese flowering cabbage

Silicon (Si) and selenium (Se) are beneficial for many higher plants when grown on stress conditions. However, the mechanisms underlying the differential effects between foliar Si and Se in alleviation of plant toxicity exposed to cadmium (Cd) stress are remained unclear. In this study, we investigated the discrepant mechanisms of foliar Si and Se on Cd absorption and compartmentation by roots, its translocation in xylem, and the antioxidant system within Chinese flowering cabbage (Brassica campestris L. ssp. chinensis var. utilis) under low and high Cd stress. Results showed that plant growth was significantly enhanced by foliar additions of Si or/and Se according to an increased plant tissue biomass at high Cd exposure. In addition, the foliar coupled addition of Si and Se showed little effects on the concentrations of Si or Se in plant tissues in comparison with the single addition of foliar Si or Se respectively. The foliar Si alone or combined with Se markedly reduced the Cd concentrations in plant shoots under two Cd treatments. This might be explained by the lower Cd concentrations in symplast and apoplast and the higher Cd concentrations in cell walls of plant roots, and the lower Cd concentrations in xylem sap. However, no great changes in these values were observed under the treatments of foliar Se alone. Moreover, the foliar additions of Si or/and Se all increased the antioxidant enzyme activities of SOD, CAT and APX in plant tissues, especially at high Cd dosage. No significant differences in the increasing degrees of these three antioxidant enzymes were found between the foliar Si and Se treatments. However, only the foliar Se alone or combined with Si markedly promoted the antioxidant enzyme activities of GR and DHAR in plant tissues. Our findings demonstrate that the alleviation of Cd toxicity by foliar Si maybe mainly responsible for inhibition of Cd absorption and its translocation to plant shoots, reinforcing its compartmentation into root cell walls, whilst enhancing the antioxidant enzyme system may be employed by foliar Se.

Laboratory Investigation of Cauliflower-Fungus-Insect Interactions for Cabbage Maggot Control

The cabbage maggot (also known as cabbage root fly [CRF]; Delia radicum L.) is a serious pest of brassicas. The pest's soil-dwelling larvae are especially damaging to young brassica transplants. In light of toxic soil insecticide phase-out novel biocontrol management solutions are sought for. Our research is focused on the development of a biological control strategy involving cauliflower plantlet inoculation with insect pathogenic fungi. This article presents the results of a laboratory investigation of cauliflower × microbe × CRF interactions. Seven isolates of fungi (entomopathogenic and rhizosphere-competent fungi and soil saprotrophs) were tested for their pathogenicity to CRF and their effects on cauliflower plantlets. The laboratory experiments were performed in sterilized substrate. Several strains significantly increased CRF mortality, some at par with a commercial bioinsecticide based on B. bassiana (Balsamo-Crivelli) Vuillemin (Hypocreales: Cordycipitaceae). All strains colonized the rhizoplane, however to varying extent. Some isolates were also reisolated from within healthy plant tissues and thus identified as endophytes. The method of applying conidia had a significant effect on survival and weight of seedlings and rhizoplane and endophytic colonization rates. Two Metarhizium brunneum Petsch (Hypocreales: Clavicipitaceae) isolates exhibited plant growth promotion effects when ungerminated seeds were coated with conidia. The ecological implications of plant × microbe × pest interactions and options for improving the effectiveness of a fungal-based biological CRF management strategy are discussed.

Biochar amendment immobilizes arsenic in farmland and reduces its bioavailability

This study aimed to determine effects of biochar derived from wheat straw at 500 °C on arsenic immobilization in a soil-Brassica campestris L system. When the soils amended with 4% modified biochar (MBC), 0.5% Fe grit as zero-valent iron (ZVI), 0.5% Fe grit + 4% MBC (ZMBC), 0.5% ZVI + 4% biochar (ZBC), 4% biochar (BC), and control (without amendments), it confirmed that available arsenic concentration in soils occurred in the following order: ZMBC < MBC < ZVI < ZBC < Control < BC. Water-soluble As (WSAs) was reduced by 89.74% and 92.30% in MBC- and ZMBC-amended soils, respectively, compared to the control. When MBC applied into soil, As uptake of shoot and root decreased by 44.55% and 45.40%, respectively, and ZMBC resulted in 74.92% and 71.80% reduction in shoot and root As of Brassica campestris L. Immobilization effect of As in ZBC was also observed though BC elevated plant As uptake significantly. The immobilization effect of MBC was mainly attributed to Fe₂O₃ impregnation illustrated by x-ray diffraction (XRD) and scanning electron microscopy (SEM) images through sorption, precipitation, and coprecipitation. Such Fe containing complexes might impede As translocation from root to shoot and subsequently reduce As accumulation in the plant with modified biochar amendment.

Speed breeding in growth chambers and glasshouses for crop breeding and model plant research

'Speed breeding' (SB) shortens the breeding cycle and accelerates crop research through rapid generation advancement. SB can be carried out in numerous ways, one of which involves extending the duration of plants' daily exposure to light, combined with early seed harvest, to cycle quickly from seed to seed, thereby reducing the generation times for some long-day (LD) or day-neutral crops. In this protocol, we present glasshouse and growth chamber-based SB approaches with supporting data from experimentation with several crops. We describe the conditions that promote the rapid growth of bread wheat, durum wheat, barley, oat, various Brassica species, chickpea, pea, grass pea, quinoa and Brachypodium distachyon. Points of flexibility within the protocols are highlighted, including how plant density can be increased to efficiently scale up plant numbers for single-seed descent (SSD). In addition, instructions are provided on how to perform SB on a small scale in a benchtop growth cabinet, enabling optimization of parameters at a low cost.

Root colonization and growth promotion of soybean, wheat and Chinese cabbage by Bacillus cereus YL6

Although phosphate-solubilizing bacteria (PSBs) are used in agricultural production, comprehensive research on PSB that colonize the rhizosphere of different plants and promote plant growth is lacking. This study was conducted to examine the growth-promoting effects and colonizing capacity of strain YL6, a PSB. YL6 not only increased the biomass of soybean and wheat in pot experiments but also increased the yield and growth of Chinese cabbage under field conditions. The observed growth promotion was related to the capacity of YL6 to dissolve inorganic and organic phosphorus and to produce indole-3-acetic (IAA) and gibberellin (GA). After applying YL6 to soybean, wheat and Chinese cabbage, the rhizosphere soil available phosphorus (available P) content increased by 120.16%, 62.47% and 7.21%, respectively, and the plant total phosphorus content increased by 198.60%, 6.20% and 78.89%, respectively, compared with plants not treated with YL6. To examine plant colonization, YL6 labeled with green fluorescent protein (YL6-GFP) was inoculated into the plant rhizosphere and found to first colonize the root surface and hairs and then to penetrate into the intercellular spaces and vessels. Collectively, these results demonstrate that YL6 promotes the growth of three different crops and colonizes them in a similar manner. The findings therefore provide a solid foundation for probing the mechanisms by which PSB affect plant growth.

Combining QTL mapping with transcriptome and metabolome profiling reveals a possible role for ABA signaling in resistance against the cabbage whitefly in cabbage

Whiteflies are among the world's most significant agricultural pests and chemical insecticides are extensively used to reduce crop damage to acceptable levels. However, nearly all insecticides pose a threat to the environment and alternative control methods, such as breeding of crop varieties that are inherently insect-resistant, are needed. Previously, a strong source of plant-age dependent resistance to the cabbage whitefly (Aleyrodes proletella) has been identified in the modern white cabbage (Brassica oleracea var. capitata) variety Rivera. However, nothing is known about the molecular mechanisms or the genes involved in this resistance. In the present study, a multidisciplinary approach combining transcriptome and metabolome profiling with genetic mapping was used to identify the molecular players of whitefly resistance in cabbage. Transcriptome profiles of young (susceptible) and older (resistant) Rivera plants were analyzed using RNA sequencing. While many genes involved in general processes were differentially expressed between both ages, several defense-related processes were overrepresented in the transcriptome profile of older plants. Hormone measurements revealed that jasmonic acid (JA) levels decreased upon whitefly infestation at both plant ages. Interestingly, abscisic acid (ABA) levels showed contrasting effects in response to whitefly infestation: ABA levels were reduced in young plants but induced in older plants upon whitefly feeding. Auxin levels were significantly lower in older plants compared with young plants, independent of whitefly presence, while glucosinolate levels were higher. Additionally, whitefly performance was monitored in an F2 population derived from a cross between Rivera and the susceptible white cabbage variety Christmas Drumhead. Significant QTL intervals were mapped on chromosome 2 and 9 for oviposition rate and whitefly adult survival, respectively. Several genes that were higher expressed in older plants and located in the identified QTL intervals were orthologous to Arabidopsis genes that have been related to ABA signaling, suggesting a role for ABA in the regulation of resistance towards whiteflies. Our results show that combining different omics approaches is a useful strategy to identify candidate genes underlying insect resistance.

Minimum tillage and organic fertilization for the sustainable management of Brassica carinata A. (Braun) in the Mediterranean environment

In recent years, the massive exploitation of agricultural land intended to meet growing food demand has led to a reduction in soil fertility through the depletion of nutrients and organic matter. To implement sustainable agriculture, it is necessary to reduce soil tillage and use residual biomasses that are easily available in the region as soil amendments. Furthermore, it is important to test these residual biomasses in order to exclude a possible increase of heavy metals in soils due to the incorporation of the aforementioned biomasses. The current study aimed to evaluate the effects on soil fertility and health following the application of organic fertilizers combined with different soil tillage practices and the agronomic response of Brassica carinata A. (Braun). The soil tillage treatments consisted of conventional (CT) and minimum tillage (MT), whereas the fertilization treatments were mineral fertilizer (N_min), municipal solid waste compost (N_comp), mixed compost and mineral fertilizer (N_mix), and sewage sludge (N_ss). These treatments were compared with an unfertilized control (N₀). The N_comp and N_ss treatments enhanced soil fertility, increasing the organic carbon and available phosphorus concentrations compared with N₀ and N_min, whereas no significant difference was showed between the soil tillage treatments in terms of soil fertility. In addition, N_ss did not show any significant difference compared to N_min in terms of crop biomass, whereas this parameter appeared higher in CT compared with MT. A principal component analysis showed that the concentrations of toxic elements applied by the organic amendments did not change the dynamic equilibrium of the soil-plant system. Over the short term, the replacement of CT and N_min with MT and N_ss can be achieved, thus guaranteeing the sustainable cultivation of Brassica, without significant changes in heavy metal concentration in soil.

Tissue culture and genetic transformation of cabbage (Brassica oleracea var. capitata): an overview

MAIN CONCLUSION

The main goal of this publication is an overview of the biotechnological achievements concerning in vitro cultures and transformation of Brassica oleracea var. capitata. Faced with the requirements of the global food market, intensified work on the genetic transformation of economically important plants is carried out in laboratories around the world. The development of efficient procedures for their regeneration and transformation could be a good solution for obtaining, in a shorter time than by traditional methods, plants with desirable traits. Furthermore, conventional breeding methods are insufficient for crop genetic improvement not only because of being time-consuming but also because they are severely limited by sexual incompatibility barriers. This problem has been overcome by genetic engineering, which seems to be a very good technique for cabbage improvement. Despite the huge progress that has been made in the field of plant regeneration and transformation methods, up to now, no routine transformation procedure has been developed in the case of cabbage. This problem stems from the fact that the efficiency of cabbage transformation is closely related to the genotype and some varieties are recalcitrant to transformation. It is obvious that it is not possible to establish one universal regeneration and transformation protocol for all varieties of cabbage. Therefore, it seems fully justified to develop the above-mentioned procedures for individual economically important cultivars. Despite the obstacles of cabbage transformation in laboratories of many countries, especially those where this vegetable is extremely popular (e.g., China, India, Korea, Malaysia, Pakistan), such attempts are made. This article reviews the achievements in the field of tissue culture and cabbage transformation from the last two decades.

Soil Inoculation with Bacillus spp. Modifies Root Endophytic Bacterial Diversity, Evenness, and Community Composition in a Context-Specific Manner

The use of microbial inoculants containing plant growth-promoting rhizobacteria as a promoter of plant fitness and health is becoming increasingly popular in agriculture. However, whether and how these bacteria affect indigenous bacterial communities in field conditions is sparsely explored. We studied the effects of seed inoculation and field soil application of ubiquitous soil bacteria, B. cereus, B. subtilis, and B. amyloliquefaciens, on the diversity, evenness, and richness of endophytic bacterial communities in sprouting broccoli roots using high-throughput metagenome sequencing. The multiple operational taxonomic units (OTUs) assigned to different bacterial taxa clearly showed changes in ecological measures and relative abundances of certain taxa between control and treatment groups. The Bacillus inocula, themselves, failed to flourish as endophytes; however, the effects they extended on the endophytic bacterial community were both generic as well as species specific. In each case, Pseudomonadales, Rhizobiales, Xanthomonadales, and Burkholderiales were the most abundant orders in the endosphere. B. amyloliquefaciens drastically reduced the most abundant genus, Pseudomonas, while increasing the relative abundance of a range of minor taxa. The Shannon-Weiner diversity and Buzas and Gibson's evenness indices showed that the diversity and evenness were increased in both B. amyloliquefaciens and mixed treated plants. The UniFrac measurement of beta diversity showed that all treatments affected the specific composition of the endophytic bacterial community, with an apparent interspecies competition in the mixed treatment. Taken together, Bacillus species influenced the diversity, evenness, and composition of the endophytic bacterial community. However, these effects varied between different Bacillus spp. in a context-specific manner.

"Assessing the potential of biochar and aged biochar to alleviate aluminum toxicity in an acid soil for achieving cabbage productivity"

Biochar has a significant effect on alleviating acid soil aluminum (Al) toxicity and promoting plant growth. The potential effects of aged biochar (long-term applied biochar in soil) on soil amendment have attracted increasing attention. Here, the effects of biochar and aged biochar were evaluated through a pot experiment. The seedlings of cabbage were grown in red soil for 45 days with the following four biochar treatments: CK (0% biochar), PB (2% primary biochar), WB (2% water washed biochar) and AB (2% acidulated biochar) to investigate the potential effect of biochar and aged biochar on mitigating red soil aluminum toxicity and improving cabbage growth. Results indicated that biochar increased the content of available potassium, available phosphorus, and organic carbon in red soil and improved cabbage growth. Biochar not only increased the pH of red soil by 0.42 units, but also reduced exchangeable acid and exchangeable hydrogen (H⁺) content by 52.74% and 2.86% respectively compared with CK. Additionally, the amount of the total active aluminum and exchangeable Al³⁺ were reduced by 26.74% and 66.09%, respectively. However, water washed biochar and acidulated biochar decreased the effect of relieving the acidity substantially as compared to the primary biochar. Moreover, acidulated biochar treatment increased the Al³⁺ content by 8.07% and trend of increasing soil available nutrients was declined with aged biochar. Taken together, it is concluded that biochar can reduce aluminum toxicity by increasing pH of acid soil and available nutrients, thus improves cabbage growth. However, aged biochar had a negative effect on aluminum toxicity reduction and acidic soil improvement, thus inhibited plant growth.

Exogenous glycine inhibits root elongation and reduces nitrate-N uptake in pak choi (Brassica campestris ssp. Chinensis L.)

Nitrogen (N) supply, including NO3--N and organic N in the form of amino acids can influence the morphological attributes of plants. For example, amino acids contribute to plant nutrition; however, the effects of exogenous amino acids on NO3--N uptake and root morphology have received little attention. In this study, we evaluated the effects of exogenous glycine (Gly) on root growth and NO3--N uptake in pak choi (Brassica campestris ssp. Chinensis L.). Addition of Gly to NO3--N agar medium or hydroponic solution significantly decreased pak choi seedling root length; these effects of Gly on root morphology were not attributed to the proportion of N supply derived from Gly. When pak choi seedlings were exposed to mixtures of Gly and NO3--N in hydroponic culture, Gly significantly reduced 15NO3--N uptake but significantly increased the number of root tips per unit root length, root activity and 15NO3--N uptake rate per unit root length. In addition, 15N-Gly was taken up into the plants. In contrast to absorbed NO3--N, which was mostly transported to the shoots, a larger proportion of absorbed Gly was retained in the roots. Exogenous Gly enhanced root 1-aminocyclopropane-1-carboxylic acid synthase (ACS) and oxidase (ACO) activities and ethylene production. The ethylene antagonists aminoethoxyvinylglycine (0.5 μM AVG) and silver nitrate (10 μM AgNO3) partly reversed Gly-induced inhibition of primary root elongation on agar plates and increased the NO3--N uptake rate under hydroponic conditions, indicating exogenous Gly exerts these effects at least partly by enhancing ethylene production in roots. These findings suggest Gly substantially affects root morphology and N uptake and provide new information on the specific responses elicited by organic N sources.

Detoxification of mercury in soil by selenite and related mechanisms

A better understanding of the benefits of selenium (Se) fertilization to alleviate the toxicity of mercury (Hg) on plants and of the underlying mechanisms involved in Hg stress is important for the remediation of soils contaminated by Hg. This study is aimed to explore the effects of the application of selenite to alleviate the toxicity of Hg in soils to plants and related mechanisms involved in this process. The chemical (Hg uptake of pak choi), biological (root and shoot length, root and shoot weight) and physiological effects (antioxidant enzyme activities, non-enzymatic antioxidant contents (proline) and lipid peroxidation products (malondialdehyde)) produced over plants by the application of different doses of Hg and Se to soil has been investigated through a pot experiment, which was conducted with exposure to different dosages of mercuric chloride (0, 1.0, 2.0, and 3.0 mg/kg soil) and sodium selenite (0, 0.5, 1.0, and 2.5 mg/kg soil). Results indicated that single high Hg treatment (3.0 mg/kg Hg) resulted in significantly increase in Hg uptake by plants (P < 0.01), thus the growth of pak choi was inhibited. However, the Se application at 1.0 and 2.5 mg/kg led to significantly alleviated Hg uptake by plants (P < 0.05). Meanwhile, the low Se (at 0.5 and 1.0 mg/kg) applied to soil induced significantly improvement the growth of pak choi (P < 0.05) by elevating the activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), glutathione peroxidase (GSH-Px) enzymes and the content of chlorophyll (SPAD value) as well as suppressed the lipid peroxidation products contents (MDA) and proline. Results collectively indicated that applied Se played an important role in promoting the detoxification of Hg and growth of pak choi under oxidative stress. Notably, this role may only be significant when Se application at the appropriate concentration (≤ 1.0 mg/kg).

Effects of cadmium and copper mixtures to carrot and pakchoi under greenhouse cultivation condition

A pot experiment was undertaken to investigate the effects of Cd and Cu mixtures to growth and nutrients (sugar, carotene or vitamin C) of carrot and pakchoi under greenhouse cultivation condition. The study included: (a) physical-chemical properties of soil and soil animals in response to Cd and Cu stress; (b) bioaccumulation of heavy metals, length, biomass, contents of sugar and carotene (vitamin C) of carrot and pakchoi; (c) estimation the effects of Cd and Cu mixtures by multivariate regression analysis. The results implied that heavy metals impacted negative influence on soil animals' abundance. The metals contents in plants increased obviously with Cd and Cu contamination in soil. The biomass production and nutrients declined with Cd and Cu contents increasing. Cd (20 mg kg^-1) treatment caused maximum reduction of sugar content (45.29%) in carrot root; maximum reduction in carotene content (75.73%) in carrot, 75.1% sugar content reduction and 70.58% vitamin C content reduction in pakchoi shoots were observed with addition of Cd (20 mg kg^-1) and Cu (400 mg kg^-1) mixture. The results of multivariate regression analysis indicated that combination of Cd and Cu exerts negative effects to both carrot and pakchoi, and both growth and nutrients were negatively correlated with metals concentrations. It is concluded that the Cd and Cu mixtures caused toxic damage to vegetable plants as Cd and Cu gradient concentrations increased.

BrNAC055, a Novel Transcriptional Activator, Regulates Leaf Senescence in Chinese Flowering Cabbage by Modulating Reactive Oxygen Species Production and Chlorophyll Degradation

Both NAC transcription factors (TFs) and reactive oxygen species (ROS) are known to be involved in leaf senescence. However, how NAC TFs modulate ROS metabolism associated with leaf senescence remains largely uncharacterized, especially during leaf senescence of postharvest economically leafy vegetables such as Chinese flowering cabbage. Here, we found that expression levels of two genes BrRbohB and BrRbohC-like encoding ROS-producing enzymes respiratory burst oxidase homologues (RBOHs) were increased consistently with the progression of postharvest leaf senescence, exhibiting a good correlation with ROS accumulation and chlorophyll degradation, as well as expressions of two chlorophyll catabolic genes ( CCGs), BrNYC1 and BrNYE1. Significantly, a novel, nuclear-localized transcriptional activator BrNAC055 was identified, and observed to show a similar expression pattern with BrRbohB, BrRbohC-like, BrNYC1 and BrNYE1. Further gel mobility shift and dual luciferase reporter assays confirmed that BrNAC055 bound directly to the NAC binding sequence (NACBS) in BrRbohB, BrRbohC-like, BrNYC1, and BrNYE1 promoters, and activated their activities. Moreover, transient overexpression of BrNAC055 in tobacco leaves made an increased ROS level and accelerated chlorophyll degradation via the up-regulation of NbRbohA and NbSGR1, resulting in the promoted leaf senescence. On the basis of these findings, we conclude that BrNAC055 acts as a transcriptional activator of ROS production and chlorophyll degradation by activating the transcriptions of RBOHs and CCGs and thereby accelerates leaf senescence in Chinese flowering cabbage.

Robust increase of leaf size by Arabidopsis thaliana GRF3-like transcription factors under different growth conditions

An increase in crop yield is essential to reassure food security to meet the accelerating global demand. Several genetic modifications can increase organ size, which in turn might boost crop yield. Still, only in a few cases their performance has been evaluated under stress conditions. MicroRNA miR396 repress the expression of GROWTH-REGULATING FACTOR (GRF) genes that codes for transcription factors that promote organ growth. Here, we show that both Arabidopsis thaliana At-GRF2 and At-GRF3 genes resistant to miR396 activity (rGRF2 and rGRF3) increased organ size, but only rGRF3 can produce this effect without causing morphological defects. Furthermore, introduction of At-rGRF3 in Brassica oleracea can increase organ size, and when At-rGRF3 homologs from soybean and rice are introduced in Arabidopsis, leaf size is also increased. This suggests that regulation of GRF3 activity by miR396 is important for organ growth in a broad range of species. Plants harboring rGRF3 have larger leaves also under drought stress, a condition that stimulates miR396 accumulation. These plants also showed an increase in the resistance to virulent bacteria, suggesting that the size increment promoted by rGRF3 occurs without an obvious cost on plant defenses. Our findings indicate that rGRF3 can increase plant organ size under both normal and stress conditions and is a valuable tool for biotechnological applications.

Effect of biochar derived from barley straw on soil physicochemical properties, crop growth, and nitrous oxide emission in an upland field in South Korea

This study was conducted to investigate soil quality, Chinese cabbage growth, and N₂O emission after biochar application in an upland field in South Korea. Each of the barley straw biochar (BC, applied at 10 ton ha^-1), inorganic fertilizer (IF, applied at N-P-K = 320-78-198 kg ha^-1), and BC + IF treatment areas were separated by a control (Cn) treatment area. Soils treated with BC and BC + IF treatments had lower bulk density and higher porosity than those in the Cn treatment areas. Soil chemical properties (pH, TN, Avail. P₂O₅, and CEC) after biochar addition were improved. In particular, soil pH and CEC related to crop nutrient availability were significantly increased in BC areas compared to those in Cn and IF areas. Fresh weights of Chinese cabbage grown under BC, IF, and BC + IF treatment conditions increased by 64.9, 78.4, and 112.0%, respectively, over that in the Cn treatment area. Total nutrient (TN, TP, and K) uptakes among the treatment areas were, in declining order, BC + IF (14.51 g plant^-1) > IF > BC > Cn. More interestingly, the BC application had a positive effect on growth of Chinese cabbage under IF application conditions, and there was a tight relationship between the effect of BC application on Chinese cabbage growth and that of agronomic IF application efficiency. Compared to the IF results, total N₂O flux was lower with BC (flux decreased by 60.6%) or BC + IF (flux decreased by 22.3%) treatments. These results indicate that Chinese cabbage yield, when cultivated in soil conditions such as those in an upland field in South Korea, can be increased by application of BC or a combination of BC and IF.

Transcriptome and DNA methylome reveal insights into yield heterosis in the curds of broccoli (Brassica oleracea L var. italic)

BACKGROUND

Curds are the main edible organs, which exhibit remarkable yield heterosis in F₁ hybrid broccoli. However, the molecular basis underlying heterosis in broccoli remains elusive.

RESULTS

In the present study, transcriptome profiles revealed that the hybridization made most genes show additive expression patterns in hybrid broccoli. The differentially expressed genes including the non-additively expressed genes detected in the hybrid broccoli and its parents were mainly involved in light, hormone and hydrogen peroxide-mediated signaling pathways, responses to stresses, and regulation of floral development, which suggested that these biological processes should play crucial roles in the yield heterosis of broccoli. Among them, light and hydrogen peroxide-mediated signaling pathways represent two novel classes of regulatory processes that could function in yield or biomass heterosis of plants. Totally, 53 candidate genes closely involved in curd yield heterosis were identified. Methylome data indicated that the DNA methylation ratio of the hybrids was higher than that of their parents. However, the DNA methylation levels of most sites also displayed additive expression patterns. These sites with differential methylation levels were predominant in the intergenic regions. In most cases, the changes of DNA methylation levels in gene regions did not significantly affect their expression levels.

CONCLUSIONS

The differentially expressed genes, the regulatory processes and the possible roles of DNA methylation modification in the formation of curd yield heterotic trait were discovered. These findings provided comprehensive insights into the curd yield heterosis in broccoli, and were significant for breeding high-yield broccoli varieties.

Subtropical Tritrophic Interactions Under Elevated CO2 and Temperature Conditions

The effects of climate change and extreme weather conditions on plants and animals have been documented extensively. However, the possible effects of these factors on plant-insect interactions in subtropical regions are relatively unexplored. The present study investigated the consequences of elevated CO2 and temperature on a tritrophic system (plant-insect-parasitoid) in subtropical regions. The experimental conditions were as follows: ambient CO2, 500 ppm; elevated CO2, 1,000 ppm; ambient temperature, 24/21°C (day/night); and elevated temperature, 29/26°C (day/night). Brassica oleracea var. italica foliar primary metabolites were quantified 6 wk after germination and insect feeding bioassays were subsequently conducted. Spodoptera litura (Fabricius) (Lepidoptera: Noctuidae) larvae were fed directly on these plants until pupal development. In addition, the second instar S. litura larvae were exposed to the parasitoid Snellenius manilae (Ashmead) (Hymenoptera: Braconidae) under the same plant treatment conditions. The results suggested that elevated CO2 has a major influence on plant performance and foliar quality. Elevated CO2 also affected the leaf area, foliar fresh and dry weights, and total nitrogen and carbohydrate contents. Elevated temperature reduced the larval development time and increased the growth rate of S. litura. Sn. manilae had a higher parasitism rate and shorter development time at elevated temperature compared with ambient temperature. These results suggested that the dynamic and communal structure of S. litura and its parasitoids requires comprehensive evaluation in terms of the changes in nutritional quality (bottom-up control) caused by the interactive effects of CO2 and temperature.

Effects of Selenium Supplementation on Glucosinolate Biosynthesis in Broccoli

Selenium (Se)-enriched broccoli has health-beneficial selenium-containing compounds, but it may contain reduced amounts of chemopreventive glucosinolates. To investigate the basis by which Se treatment influences glucosinolate levels, we treated two broccoli cultivars with 25 μM Na₂SeO₄. We found that Se supplementation suppressed the accumulation of total glucosinolates, particularly glucoraphanin, the direct precursor of a potent anticancer compound, in broccoli florets and leaves. We showed that the suppression was not associated with plant sulfur nutrition. The levels of the glucosinolate precursors methionine and phenylalanine as well as the expression of genes involved in glucosinolate biosynthesis were greatly decreased following Se supplementation. Comparative proteomic analysis identified proteins in multiple metabolic and cellular processes that were greatly affected and detected an enzyme affecting methionine biosynthesis that was reduced in the Se-biofortified broccoli. These results indicate that Se-conferred glucosinolate reduction is associated with negative effects on precursor amino acid biosynthesis and glucosinolate-biosynthetic-gene expression and provide information for a better understanding of glucosinolate accumulation in response to Se supplementation in broccoli.

Effects of a natural sepiolite bearing material and lime on the immobilization and persistence of cadmium in a contaminated acid agricultural soil

Soil contamination with cadmium (Cd) represents a substantial threat to human health and environmental quality. Long-term effectiveness and persistence of remediation are two important criteria for the evaluation of amendment techniques used to remediate soils polluted with potentially toxic metals. In the current study, we investigated the remediation persistence of a natural sepiolite bearing material (NSBM, containing 15% sepiolite) and ground limestone (equivalent to > 98.0% CaO) on soil pH, Cd bioavailability, and Cd accumulation by pak choi (Brassica chinensis L.) during the growth of four consecutive crops in a Cd-contaminated acid soil with different amounts of NSBM (0, 0.2, 0.5, 1, 2, and 5%). Soil pH levels ranged from 5.21 to 7.76 during the first crop, 4.30 to 7.34 during the second, 4.23 to 7.80 during the third, and 4.33 to 6.98 during the fourth, and increased significantly with increasing the application rate of NSBM. Soil CaCl₂-Cd and shoot Cd concentrations decreased by 8.11 to 99.2% and 6.58 to 94.5%, respectively, compared with the control throughout the four cropping seasons. A significant negative correlation was found between soil CaCl₂-Cd and soil pH. Combined use of 0.1% lime and NSBM showed greater effects than NSBM alone, especially, when the application rate of NSBM was ˂ 2%. Moreover, pak choi tissue Cd concentrations in the treatments with NSBM addition alone at ≥ 2% or at ≥ 1% NSBM combined with 0.1% lime met the maximum permissible concentration (MPC) over the four crops, allowed by the Chinese and European regulations. Based on the present study, safe crop production in the test soil is possible at a soil pH > 6.38 and CaCl₂-Cd < 14 μg kg^-1, and soil Cd immobilization by NSBM without or with lime is a potentially feasible method of controlling the transfer of soil Cd into the food chain.

Granular, Slow-Release Fertilizer from Urea-formaldehyde, Ammonium Polyphosphate, and Amorphous Silica Gel: A New Strategy Using Cold Extrusion

A new granular, slow-release fertilizer prepared by a cold-extrusion strategy (GSRFEx) based on urea-formaldehyde (UF), ammonium polyphosphate (APP), and amorphous silica gel (ASG) was presented. Characterizations showed that there were strong hydrogen-bond interactions and good compatibility among UF, APP, and ASG in GSRFEx. The mechanical properties as well as the slow-release properties of GSRFEx were greatly enhanced after the addition of APP and ASG to UF. Rape pot experiments indicated that GSRFEx could improve N-use efficiency dramatically and thereby facilitate the growth of rape. Importantly, as an economical, effective, and environment-friendly technology, cold extrusion has great potential to be applied in horticulture and agriculture. We hope that our work can offer an alternative method for the design of slow-release fertilizers with desirable properties.

Mining of Brassica-Specific Genes (BSGs) and Their Induction in Different Developmental Stages and under Plasmodiophora brassicae Stress in Brassica rapa

Orphan genes, also called lineage-specific genes (LSGs), are important for responses to biotic and abiotic stresses, and are associated with lineage-specific structures and biological functions. To date, there have been no studies investigating gene number, gene features, or gene expression patterns of orphan genes in Brassica rapa. In this study, 1540 Brassica-specific genes (BSGs) and 1824 Cruciferae-specific genes (CSGs) were identified based on the genome of Brassica rapa. The genic features analysis indicated that BSGs and CSGs possessed a lower percentage of multi-exon genes, higher GC content, and shorter gene length than evolutionary-conserved genes (ECGs). In addition, five types of BSGs were obtained and 145 out of 529 real A subgenome-specific BSGs were verified by PCR in 51 species. In silico and semi-qPCR, gene expression analysis of BSGs suggested that BSGs are expressed in various tissue and can be induced by Plasmodiophora brassicae. Moreover, an A/C subgenome-specific BSG, BSGs1, was specifically expressed during the heading stage, indicating that the gene might be associated with leafy head formation. Our results provide valuable biological information for studying the molecular function of BSGs for Brassica-specific phenotypes and biotic stress in B. rapa.

Energy Regulated Nutritive and Antioxidant Properties during the Germination and Sprouting of Broccoli Sprouts ( Brassica oleracea var. italica)

The role of energy status in germination and sprouting of broccoli seeds was investigated by exogenous ATP and DNP treatments. With the synthesis of adenylates from 38.82 to 142.69 mg·100 g^-1 DW, the nutritive components (soluble sugar, proteins, pigments, and phenolics) and AAs were increased during germination and early sprouting (day 5). Elements of the BoSnRK2 pathway were down-regulated by more than 2 fold under the energy charge feedback inhibition. At the end of sprouting (day 7), energy depletion resulted in slowdown or reduced nutritional accumulation and antioxidant capacities. Exogenous ATP depressed the BoSnRK2 pathway by maintaining the energy status at high levels and further promoted the nutrition and antioxidant levels. It also prevented the energy depletion at day 7. On the contrary, DNP reduced the ATP contents (16.10-26.86%) and activated the BoSnRK2 pathway. It also notably suppressed the energy-consuming activities including germination, sprouts growth, and secondary metabolic synthesis.

The putative pectin methylesterase gene, BcMF23a, is required for microspore development and pollen tube growth in Brassica campestris

BcMF23a contributes to pollen wall development via influencing intine construction, which, in turn, influences pollen tube growth. Pollen wall, the morphological out face of pollen, surrounds male gametophyte and plays an important role in plant reproduction. Pectin methylesterases (PMEs) are involved in pollen wall construction by de-esterifying pectin of the intine. In this study, the function of a putative pectin methylesterase gene, Brassica campestris Male Fertility 23a (BcMF23a), was investigated. Knockdown of BcMF23a by artificial microRNA (amiRNA) technology resulted in abnormal pollen intine formation outside of the germinal furrows at the binucleate stage. At the trinucleate stage, 20.69% of pollen possessed the degradation of nuclei, cytoplasm and the intine, resulting in shrunken pollen, whereas the remaining 75.86% were wall-disrupted with degrading cytoplasm and broken exine inside the germinal furrows. In addition, pollen abortion in transgenic plants caused germination percentage reduction by 19% in vitro and pollen tube growth disruption in natural stigma in vivo. Taken together, BcMF23a is involved in pollen development and pollen tube growth, possibly via participating in intine construction. This study may contribute towards understanding the function of pollen-specific PMEs and the molecular regulatory network of pollen wall development.