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Abdel-Salam M, Hu G, Çelik E, Gharehchopogh FS, El-Hasnony IM. Chaotic RIME optimization algorithm with adaptive mutualism for feature selection problems. Comput Biol Med 2024; 179:108803. [PMID: 38955125 DOI: 10.1016/j.compbiomed.2024.108803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 05/17/2024] [Accepted: 06/24/2024] [Indexed: 07/04/2024]
Abstract
The RIME optimization algorithm is a newly developed physics-based optimization algorithm used for solving optimization problems. The RIME algorithm proved high-performing in various fields and domains, providing a high-performance solution. Nevertheless, like many swarm-based optimization algorithms, RIME suffers from many limitations, including the exploration-exploitation balance not being well balanced. In addition, the likelihood of falling into local optimal solutions is high, and the convergence speed still needs some work. Hence, there is room for enhancement in the search mechanism so that various search agents can discover new solutions. The authors suggest an adaptive chaotic version of the RIME algorithm named ACRIME, which incorporates four main improvements, including an intelligent population initialization using chaotic maps, a novel adaptive modified Symbiotic Organism Search (SOS) mutualism phase, a novel mixed mutation strategy, and the utilization of restart strategy. The main goal of these improvements is to improve the variety of the population, achieve a better balance between exploration and exploitation, and improve RIME's local and global search abilities. The study assesses the effectiveness of ACRIME by using the standard benchmark functions of the CEC2005 and CEC2019 benchmarks. The proposed ACRIME is also applied as a feature selection to fourteen various datasets to test its applicability to real-world problems. Besides, the ACRIME algorithm is applied to the COVID-19 classification real problem to test its applicability and performance further. The suggested algorithm is compared to other sophisticated classical and advanced metaheuristics, and its performance is assessed using statistical tests such as Wilcoxon rank-sum and Friedman rank tests. The study demonstrates that ACRIME exhibits a high level of competitiveness and often outperforms competing algorithms. It discovers the optimal subset of features, enhancing the accuracy of classification and minimizing the number of features employed. This study primarily focuses on enhancing the equilibrium between exploration and exploitation, extending the scope of local search.
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Affiliation(s)
- Mahmoud Abdel-Salam
- Faculty of Computer and Information Science, Mansoura University, Mansoura, 35516, Egypt.
| | - Gang Hu
- Department of Applied Mathematics, Xi'an University of Technology, Xi'an, 710054, PR China
| | - Emre Çelik
- Department of Electrical and Electronics Engineering, Faculty of Engineering, Düzce University, Düzce, Turkey
| | | | - Ibrahim M El-Hasnony
- Faculty of Computer and Information Science, Mansoura University, Mansoura, 35516, Egypt
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Gunasekaran S, Mercy Bai PS, Mathivanan SK, Rajadurai H, Shivahare BD, Shah MA. Automated brain tumor diagnostics: Empowering neuro-oncology with deep learning-based MRI image analysis. PLoS One 2024; 19:e0306493. [PMID: 39190622 PMCID: PMC11349112 DOI: 10.1371/journal.pone.0306493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 06/18/2024] [Indexed: 08/29/2024] Open
Abstract
Brain tumors, characterized by the uncontrolled growth of abnormal cells, pose a significant threat to human health. Early detection is crucial for successful treatment and improved patient outcomes. Magnetic Resonance Imaging (MRI) is the primary diagnostic tool for brain tumors, providing detailed visualizations of the brain's intricate structures. However, the complexity and variability of tumor shapes and locations often challenge physicians in achieving accurate tumor segmentation on MRI images. Precise tumor segmentation is essential for effective treatment planning and prognosis. To address this challenge, we propose a novel hybrid deep learning technique, Convolutional Neural Network and ResNeXt101 (ConvNet-ResNeXt101), for automated tumor segmentation and classification. Our approach commences with data acquisition from the BRATS 2020 dataset, a benchmark collection of MRI images with corresponding tumor segmentations. Next, we employ batch normalization to smooth and enhance the collected data, followed by feature extraction using the AlexNet model. This involves extracting features based on tumor shape, position, shape, and surface characteristics. To select the most informative features for effective segmentation, we utilize an advanced meta-heuristics algorithm called Advanced Whale Optimization (AWO). AWO mimics the hunting behavior of humpback whales to iteratively search for the optimal feature subset. With the selected features, we perform image segmentation using the ConvNet-ResNeXt101 model. This deep learning architecture combines the strengths of ConvNet and ResNeXt101, a type of ConvNet with aggregated residual connections. Finally, we apply the same ConvNet-ResNeXt101 model for tumor classification, categorizing the segmented tumor into distinct types. Our experiments demonstrate the superior performance of our proposed ConvNet-ResNeXt101 model compared to existing approaches, achieving an accuracy of 99.27% for the tumor core class with a minimum learning elapsed time of 0.53 s.
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Affiliation(s)
- Subathra Gunasekaran
- Department of Computer Science and Engineering, Sathyabama Institute of Science and Technology, Chennai, India
| | | | | | - Hariharan Rajadurai
- School of Computing Science and Engineering, VIT Bhopal University, Sehore, India
| | - Basu Dev Shivahare
- School of Computer Science and Engineering, Galgotias University, Greater Noida, India
| | - Mohd Asif Shah
- Faculty of Kebri Dehar University, Somali, Ethiopia
- Division of Research and Development, Lovely Professional University, Phagwara, Punjab, India
- Centre of Research Impact and Outcome, Chitkara University Institute of Engineering and Technology, Chitkara University, Rajpura, Punjab, India
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Monadhel H, Abbas AR, Mohammed AJ. COVID-19 Vaccine: Predicting Vaccine Types and Assessing Mortality Risk Through Ensemble Learning Algorithms. F1000Res 2024; 12:1200. [PMID: 38799245 PMCID: PMC11128056 DOI: 10.12688/f1000research.140395.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 06/17/2024] [Indexed: 05/29/2024] Open
Abstract
Background There is no doubt that vaccination is crucial for preventing the spread of diseases; however, not every vaccine is perfect or will work for everyone. The main objective of this work is to predict which vaccine will be most effective for a candidate without causing severe adverse reactions and to categorize a patient as potentially at high risk of death from the COVID-19 vaccine. Methods A comprehensive analysis was conducted using a dataset on COVID-19 vaccine adverse reactions, exploring binary and multiclass classification scenarios. Ensemble models, including Random Forest, Decision Tree, Light Gradient Boosting, and extreme gradient boosting algorithm, were utilized to achieve accurate predictions. Class balancing techniques like SMOTE, TOMEK_LINK, and SMOTETOMEK were incorporated to enhance model performance. Results The study revealed that pre-existing conditions such as diabetes, hypertension, heart disease, history of allergies, prior vaccinations, other medications, age, and gender were crucial factors associated with poor outcomes. Moreover, using medical history, the ensemble learning classifiers achieved accuracy scores ranging from 75% to 87% in predicting the vaccine type and mortality possibility. The Random Forest model emerged as the best prediction model, while the implementation of the SMOTE and SMOTETOMEK methods generally improved model performance. Conclusion The random forest model emerges as the top recommendation for machine learning tasks that require high accuracy and resilience. Moreover, the findings highlight the critical role of medical history in optimizing vaccine outcomes and minimizing adverse reactions.
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Affiliation(s)
- Hind Monadhel
- Computer Science, University of Technology - Iraq, Baghdad, Iraq
| | - Ayad R. Abbas
- Computer Science, University of Technology- Iraq, Baghdad, Iraq
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Kapalaga G, Kivunike FN, Kerfua S, Jjingo D, Biryomumaisho S, Rutaisire J, Ssajjakambwe P, Mugerwa S, Kiwala Y. A unified Foot and Mouth Disease dataset for Uganda: evaluating machine learning predictive performance degradation under varying distributions. Front Artif Intell 2024; 7:1446368. [PMID: 39144542 PMCID: PMC11322090 DOI: 10.3389/frai.2024.1446368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2024] [Accepted: 07/09/2024] [Indexed: 08/16/2024] Open
Abstract
In Uganda, the absence of a unified dataset for constructing machine learning models to predict Foot and Mouth Disease outbreaks hinders preparedness. Although machine learning models exhibit excellent predictive performance for Foot and Mouth Disease outbreaks under stationary conditions, they are susceptible to performance degradation in non-stationary environments. Rainfall and temperature are key factors influencing these outbreaks, and their variability due to climate change can significantly impact predictive performance. This study created a unified Foot and Mouth Disease dataset by integrating disparate sources and pre-processing data using mean imputation, duplicate removal, visualization, and merging techniques. To evaluate performance degradation, seven machine learning models were trained and assessed using metrics including accuracy, area under the receiver operating characteristic curve, recall, precision and F1-score. The dataset showed a significant class imbalance with more non-outbreaks than outbreaks, requiring data augmentation methods. Variability in rainfall and temperature impacted predictive performance, causing notable degradation. Random Forest with borderline SMOTE was the top-performing model in a stationary environment, achieving 92% accuracy, 0.97 area under the receiver operating characteristic curve, 0.94 recall, 0.90 precision, and 0.92 F1-score. However, under varying distributions, all models exhibited significant performance degradation, with random forest accuracy dropping to 46%, area under the receiver operating characteristic curve to 0.58, recall to 0.03, precision to 0.24, and F1-score to 0.06. This study underscores the creation of a unified Foot and Mouth Disease dataset for Uganda and reveals significant performance degradation in seven machine learning models under varying distributions. These findings highlight the need for new methods to address the impact of distribution variability on predictive performance.
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Affiliation(s)
- Geofrey Kapalaga
- Department of Information Technology, College of Computing and Information Sciences, Makerere University, Kampala, Uganda
| | - Florence N. Kivunike
- Department of Information Technology, College of Computing and Information Sciences, Makerere University, Kampala, Uganda
| | - Susan Kerfua
- National Livestock Resources Research Institute, Kampala, Uganda
| | - Daudi Jjingo
- African Center of Excellence in Bioinformatics (ACE-B), Makerere University, Kampala, Uganda
- Department of Computer Science, College of Computing and Information Sciences, Makerere University, Kampala, Uganda
| | - Savino Biryomumaisho
- College of Veterinary Medicine, Animal Resources and Bio-Security, Makerere University, Kampala, Uganda
| | - Justus Rutaisire
- National Livestock Resources Research Institute, Kampala, Uganda
| | | | - Swidiq Mugerwa
- National Livestock Resources Research Institute, Kampala, Uganda
| | - Yusuf Kiwala
- College of Business and Management Sciences, Makerere University, Kampala, Uganda
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Fan X, Li J, Yan J. Automated identification and segmentation of urine spots based on deep-learning. PeerJ 2024; 12:e17398. [PMID: 39035153 PMCID: PMC11260409 DOI: 10.7717/peerj.17398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 04/25/2024] [Indexed: 07/23/2024] Open
Abstract
Micturition serves an essential physiological function that allows the body to eliminate metabolic wastes and maintain water-electrolyte balance. The urine spot assay (VSA), as a simple and economical assay, has been widely used in the study of micturition behavior in rodents. However, the traditional VSA method relies on manual judgment, introduces subjective errors, faces difficulty in obtaining appearance time of each urine spot, and struggles with quantitative analysis of overlapping spots. To address these challenges, we developed a deep learning-based approach for the automatic identification and segmentation of urine spots. Our system employs a target detection network to efficiently detect each urine spot and utilizes an instance segmentation network to achieve precise segmentation of overlapping urine spots. Compared with the traditional VSA method, our system achieves automated detection of urine spot area of micturition in rodents, greatly reducing subjective errors. It accurately determines the urination time of each spot and effectively quantifies the overlapping spots. This study enables high-throughput and precise urine spot detection, providing important technical support for the analysis of urination behavior and the study of the neural mechanism underlying urination.
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Affiliation(s)
- Xin Fan
- Medical School, Guangxi University, Nanning, Guangxi, China
| | - Jun Li
- School of Physical Science and Technology, Guangxi University, Nanning, Guangxi, China
| | - Junan Yan
- Naval Medical Center, Naval Medical University, Shanghai, Shanghai, China
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Mikulić M, Vičević D, Nagy E, Napravnik M, Štajduhar I, Tschauner S, Hržić F. Balancing Performance and Interpretability in Medical Image Analysis: Case study of Osteopenia. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024:10.1007/s10278-024-01194-8. [PMID: 39020155 DOI: 10.1007/s10278-024-01194-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 06/09/2024] [Accepted: 06/25/2024] [Indexed: 07/19/2024]
Abstract
Multiple studies within the medical field have highlighted the remarkable effectiveness of using convolutional neural networks for predicting medical conditions, sometimes even surpassing that of medical professionals. Despite their great performance, convolutional neural networks operate as black boxes, potentially arriving at correct conclusions for incorrect reasons or areas of focus. Our work explores the possibility of mitigating this phenomenon by identifying and occluding confounding variables within images. Specifically, we focused on the prediction of osteopenia, a serious medical condition, using the publicly available GRAZPEDWRI-DX dataset. After detection of the confounding variables in the dataset, we generated masks that occlude regions of images associated with those variables. By doing so, models were forced to focus on different parts of the images for classification. Model evaluation using F1-score, precision, and recall showed that models trained on non-occluded images typically outperformed models trained on occluded images. However, a test where radiologists had to choose a model based on the focused regions extracted by the GRAD-CAM method showcased different outcomes. The radiologists' preference shifted towards models trained on the occluded images. These results suggest that while occluding confounding variables may degrade model performance, it enhances interpretability, providing more reliable insights into the reasoning behind predictions. The code to repeat our experiment is available on the following link: https://github.com/mikulicmateo/osteopenia .
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Affiliation(s)
- Mateo Mikulić
- University of Rijeka, Faculty of Engineering, Department of Computer Engineering, Vukovarska 58, Rijeka, 51000, Croatia
| | - Dominik Vičević
- University of Rijeka, Faculty of Engineering, Department of Computer Engineering, Vukovarska 58, Rijeka, 51000, Croatia
| | - Eszter Nagy
- Medical University of Graz, Department of Radiology, Division of Pediatric Radiology, Graz, 8036, Austria
| | - Mateja Napravnik
- University of Rijeka, Faculty of Engineering, Department of Computer Engineering, Vukovarska 58, Rijeka, 51000, Croatia
| | - Ivan Štajduhar
- University of Rijeka, Faculty of Engineering, Department of Computer Engineering, Vukovarska 58, Rijeka, 51000, Croatia
- University of Rijeka, Center for Artificial Intelligence and Cybersecurity, Radmile Matejčić 2, Rijeka, 51000, Croatia
| | - Sebastian Tschauner
- Medical University of Graz, Department of Radiology, Division of Pediatric Radiology, Graz, 8036, Austria
| | - Franko Hržić
- University of Rijeka, Faculty of Engineering, Department of Computer Engineering, Vukovarska 58, Rijeka, 51000, Croatia.
- University of Rijeka, Center for Artificial Intelligence and Cybersecurity, Radmile Matejčić 2, Rijeka, 51000, Croatia.
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Rahman MM, Muniyandi RC, Sahran S, Usman OL, Moniruzzaman M. Restoring private autism dataset from sanitized database using an optimized key produced from enhanced combined PSO-GWO framework. Sci Rep 2024; 14:15763. [PMID: 38982129 PMCID: PMC11233581 DOI: 10.1038/s41598-024-66603-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2024] [Accepted: 07/02/2024] [Indexed: 07/11/2024] Open
Abstract
The timely identification of autism spectrum disorder (ASD) in children is imperative to prevent potential challenges as they grow. When sharing data related to autism for an accurate diagnosis, safeguarding its security and privacy is a paramount concern to fend off unauthorized access, modification, or theft during transmission. Researchers have devised diverse security and privacy models or frameworks, most of which often leverage proprietary algorithms or adapt existing ones to address data leakage. However, conventional anonymization methods, although effective in the sanitization process, proved inadequate for the restoration process. Furthermore, despite numerous scholarly contributions aimed at refining the restoration process, the accuracy of restoration remains notably deficient. Based on the problems identified above, this paper presents a novel approach to data restoration for sanitized sensitive autism datasets with improved performance. In the prior study, we constructed an optimal key for the sanitization process utilizing the proposed Enhanced Combined PSO-GWO framework. This key was implemented to conceal sensitive autism data in the database, thus avoiding information leakage. In this research, the same key was employed during the data restoration process to enhance the accuracy of the original data recovery. Therefore, the study enhanced the restoration process for ASD data's security and privacy by utilizing an optimal key produced via the Enhanced Combined PSO-GWO framework. When compared to existing meta-heuristic algorithms, the simulation results from the autism data restoration experiments demonstrated highly competitive accuracies with 99.90%, 99.60%, 99.50%, 99.25%, and 99.70%, respectively. Among the four types of datasets used, this method outperforms other existing methods on the 30-month autism children dataset, mostly.
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Affiliation(s)
- Md Mokhlesur Rahman
- Centre for Cyber Security, Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM, Bangi, Selangor, Malaysia.
| | - Ravie Chandren Muniyandi
- Centre for Cyber Security, Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM, Bangi, Selangor, Malaysia
| | - Shahnorbanun Sahran
- Centre for Artificial Intelligence Technology, Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM, Bangi, Selangor, Malaysia
| | - Opeyemi Lateef Usman
- Centre for Cyber Security, Faculty of Information Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM, Bangi, Selangor, Malaysia
- Department of Computer Science, Tai Solarin University of Education, P.M.B. 2118, Ijagun, Ogun State, Nigeria
| | - Md Moniruzzaman
- Department of Electrical and Electronic Engineering, College of Engineering and Technology, International University of Business Agriculture and Technology, Uttara, Dhaka, 1230, Bangladesh
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Saifullah S, Mercier D, Lucieri A, Dengel A, Ahmed S. The privacy-explainability trade-off: unraveling the impacts of differential privacy and federated learning on attribution methods. Front Artif Intell 2024; 7:1236947. [PMID: 39021435 PMCID: PMC11253022 DOI: 10.3389/frai.2024.1236947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 06/17/2024] [Indexed: 07/20/2024] Open
Abstract
Since the advent of deep learning (DL), the field has witnessed a continuous stream of innovations. However, the translation of these advancements into practical applications has not kept pace, particularly in safety-critical domains where artificial intelligence (AI) must meet stringent regulatory and ethical standards. This is underscored by the ongoing research in eXplainable AI (XAI) and privacy-preserving machine learning (PPML), which seek to address some limitations associated with these opaque and data-intensive models. Despite brisk research activity in both fields, little attention has been paid to their interaction. This work is the first to thoroughly investigate the effects of privacy-preserving techniques on explanations generated by common XAI methods for DL models. A detailed experimental analysis is conducted to quantify the impact of private training on the explanations provided by DL models, applied to six image datasets and five time series datasets across various domains. The analysis comprises three privacy techniques, nine XAI methods, and seven model architectures. The findings suggest non-negligible changes in explanations through the implementation of privacy measures. Apart from reporting individual effects of PPML on XAI, the paper gives clear recommendations for the choice of techniques in real applications. By unveiling the interdependencies of these pivotal technologies, this research marks an initial step toward resolving the challenges that hinder the deployment of AI in safety-critical settings.
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Affiliation(s)
- Saifullah Saifullah
- Department of Computer Science, RPTU Kaiserslautern-Landau, Kaiserslautern, Rhineland-Palatinate, Germany
- Smart Data and Knowledge Services (SDS), DFKI GmbH, Kaiserslautern, Rhineland-Palatinate, Germany
| | - Dominique Mercier
- Department of Computer Science, RPTU Kaiserslautern-Landau, Kaiserslautern, Rhineland-Palatinate, Germany
- Smart Data and Knowledge Services (SDS), DFKI GmbH, Kaiserslautern, Rhineland-Palatinate, Germany
| | - Adriano Lucieri
- Department of Computer Science, RPTU Kaiserslautern-Landau, Kaiserslautern, Rhineland-Palatinate, Germany
- Smart Data and Knowledge Services (SDS), DFKI GmbH, Kaiserslautern, Rhineland-Palatinate, Germany
| | - Andreas Dengel
- Department of Computer Science, RPTU Kaiserslautern-Landau, Kaiserslautern, Rhineland-Palatinate, Germany
- Smart Data and Knowledge Services (SDS), DFKI GmbH, Kaiserslautern, Rhineland-Palatinate, Germany
| | - Sheraz Ahmed
- Smart Data and Knowledge Services (SDS), DFKI GmbH, Kaiserslautern, Rhineland-Palatinate, Germany
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Liu C, Chen W, Li M. A hybrid EEG classification model using layered cascade deep learning architecture. Med Biol Eng Comput 2024; 62:2213-2229. [PMID: 38507121 DOI: 10.1007/s11517-024-03072-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 03/11/2024] [Indexed: 03/22/2024]
Abstract
The problem of multi-class classification is always a challenge in the field of EEG (electroencephalogram)-based seizure detection. The traditional studies focus on computing or learning a set of features from EEG to distinguish between different patterns. However, the extraction of characteristic information becomes increasingly difficult as the number of EEG types increases. To address this issue, a creative EEG classification technique is proposed by employing a principal component analysis network (PCANet) coupled with phase space reconstruction (PSR) and power spectrum density (PSD). We have introduced the PSR and PSD to prepare the inputs, where dynamic and frequency information are exposed from deep within PCANet. It is remarkable that a layered cascade strategy is designed to make a powerful deep learner according to the rule of one network vs one task (OVO). The proposed method has achieved greater effects than the individual models and shown superior performance in comparison with state-of-the-art algorithms, which present 98.0% of sensitivity, 99.90% of specificity, and 99.07% of accuracy. Our ensemble PCANet model works in an assembly line-like manner, obviating the need for hand-craft features. Results demonstrate that the proposed scheme can greatly enhances the accuracy and robustness of seizure detection from EEG signals.
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Affiliation(s)
- Chang Liu
- College of Communication Engineering, Jilin University, Ren Min Street 5988, Changchun, China
| | - Wanzhong Chen
- College of Communication Engineering, Jilin University, Ren Min Street 5988, Changchun, China
| | - Mingyang Li
- College of Communication Engineering, Jilin University, Ren Min Street 5988, Changchun, China.
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Alie MS, Negesse Y, Kindie K, Merawi DS. Machine learning algorithms for predicting COVID-19 mortality in Ethiopia. BMC Public Health 2024; 24:1728. [PMID: 38943093 PMCID: PMC11212371 DOI: 10.1186/s12889-024-19196-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Accepted: 06/19/2024] [Indexed: 07/01/2024] Open
Abstract
BACKGROUND Coronavirus disease 2019 (COVID-19), a global public health crisis, continues to pose challenges despite preventive measures. The daily rise in COVID-19 cases is concerning, and the testing process is both time-consuming and costly. While several models have been created to predict mortality in COVID-19 patients, only a few have shown sufficient accuracy. Machine learning algorithms offer a promising approach to data-driven prediction of clinical outcomes, surpassing traditional statistical modeling. Leveraging machine learning (ML) algorithms could potentially provide a solution for predicting mortality in hospitalized COVID-19 patients in Ethiopia. Therefore, the aim of this study is to develop and validate machine-learning models for accurately predicting mortality in COVID-19 hospitalized patients in Ethiopia. METHODS Our study involved analyzing electronic medical records of COVID-19 patients who were admitted to public hospitals in Ethiopia. Specifically, we developed seven different machine learning models to predict COVID-19 patient mortality. These models included J48 decision tree, random forest (RF), k-nearest neighborhood (k-NN), multi-layer perceptron (MLP), Naïve Bayes (NB), eXtreme gradient boosting (XGBoost), and logistic regression (LR). We then compared the performance of these models using data from a cohort of 696 patients through statistical analysis. To evaluate the effectiveness of the models, we utilized metrics derived from the confusion matrix such as sensitivity, specificity, precision, and receiver operating characteristic (ROC). RESULTS The study included a total of 696 patients, with a higher number of females (440 patients, accounting for 63.2%) compared to males. The median age of the participants was 35.0 years old, with an interquartile range of 18-79. After conducting different feature selection procedures, 23 features were examined, and identified as predictors of mortality, and it was determined that gender, Intensive care unit (ICU) admission, and alcohol drinking/addiction were the top three predictors of COVID-19 mortality. On the other hand, loss of smell, loss of taste, and hypertension were identified as the three lowest predictors of COVID-19 mortality. The experimental results revealed that the k-nearest neighbor (k-NN) algorithm outperformed than other machine learning algorithms, achieving an accuracy of 95.25%, sensitivity of 95.30%, precision of 92.7%, specificity of 93.30%, F1 score 93.98% and a receiver operating characteristic (ROC) score of 96.90%. These findings highlight the effectiveness of the k-NN algorithm in predicting COVID-19 outcomes based on the selected features. CONCLUSION Our study has developed an innovative model that utilizes hospital data to accurately predict the mortality risk of COVID-19 patients. The main objective of this model is to prioritize early treatment for high-risk patients and optimize strained healthcare systems during the ongoing pandemic. By integrating machine learning with comprehensive hospital databases, our model effectively classifies patients' mortality risk, enabling targeted medical interventions and improved resource management. Among the various methods tested, the K-nearest neighbors (KNN) algorithm demonstrated the highest accuracy, allowing for early identification of high-risk patients. Through KNN feature identification, we identified 23 predictors that significantly contribute to predicting COVID-19 mortality. The top five predictors are gender (female), intensive care unit (ICU) admission, alcohol drinking, smoking, and symptoms of headache and chills. This advancement holds great promise in enhancing healthcare outcomes and decision-making during the pandemic. By providing services and prioritizing patients based on the identified predictors, healthcare facilities and providers can improve the chances of survival for individuals. This model provides valuable insights that can guide healthcare professionals in allocating resources and delivering appropriate care to those at highest risk.
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Affiliation(s)
- Melsew Setegn Alie
- Department Public Health, School of Public Health, College of Medicine and Health Science, Mizan-Tepi University, Mizan-Aman, Ethiopia.
| | - Yilkal Negesse
- Department of Public Health, College of Medicine and Health Science, Debre Markos University, Gojjam, Ethiopia
| | - Kassa Kindie
- Department Nursing, College of Medicine and Health Science, Mizan-Tepi University, Mizan-Aman, Ethiopia
| | - Dereje Senay Merawi
- Department of Information Technology, Faculty of Technology, Debre Tabor University, Gonder, Ethiopia
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Yıldız Potter İ, Yeritsyan D, Rodriguez EK, Wu JS, Nazarian A, Vaziri A. Detection and Localization of Spine Disorders from Plain Radiography. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024:10.1007/s10278-024-01175-x. [PMID: 38937344 DOI: 10.1007/s10278-024-01175-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 05/16/2024] [Accepted: 06/09/2024] [Indexed: 06/29/2024]
Abstract
Spine disorders can cause severe functional limitations, including back pain, decreased pulmonary function, and increased mortality risk. Plain radiography is the first-line imaging modality to diagnose suspected spine disorders. Nevertheless, radiographical appearance is not always sufficient due to highly variable patient and imaging parameters, which can lead to misdiagnosis or delayed diagnosis. Employing an accurate automated detection model can alleviate the workload of clinical experts, thereby reducing human errors, facilitating earlier detection, and improving diagnostic accuracy. To this end, deep learning-based computer-aided diagnosis (CAD) tools have significantly outperformed the accuracy of traditional CAD software. Motivated by these observations, we proposed a deep learning-based approach for end-to-end detection and localization of spine disorders from plain radiographs. In doing so, we took the first steps in employing state-of-the-art transformer networks to differentiate images of multiple spine disorders from healthy counterparts and localize the identified disorders, focusing on vertebral compression fractures (VCF) and spondylolisthesis due to their high prevalence and potential severity. The VCF dataset comprised 337 images, with VCFs collected from 138 subjects and 624 normal images collected from 337 subjects. The spondylolisthesis dataset comprised 413 images, with spondylolisthesis collected from 336 subjects and 782 normal images collected from 413 subjects. Transformer-based models exhibited 0.97 Area Under the Receiver Operating Characteristic Curve (AUC) in VCF detection and 0.95 AUC in spondylolisthesis detection. Further, transformers demonstrated significant performance improvements against existing end-to-end approaches by 4-14% AUC (p-values < 10-13) for VCF detection and by 14-20% AUC (p-values < 10-9) for spondylolisthesis detection.
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Affiliation(s)
| | - Diana Yeritsyan
- Beth Israel Deaconess Medical Center (BIDMC), Carl J. Shapiro Department of Orthopedic Surgery, Harvard Medical School, 330 Brookline Avenue, Stoneman 10, Boston, MA, 02215, USA
- Musculoskeletal Translational Innovation Initiative, Beth Israel Deaconess Medical Center, Harvard Medical School, 330 Brookline Avenue, Boston, MA, RN123, USA
| | - Edward K Rodriguez
- Beth Israel Deaconess Medical Center (BIDMC), Carl J. Shapiro Department of Orthopedic Surgery, Harvard Medical School, 330 Brookline Avenue, Stoneman 10, Boston, MA, 02215, USA
- Musculoskeletal Translational Innovation Initiative, Beth Israel Deaconess Medical Center, Harvard Medical School, 330 Brookline Avenue, Boston, MA, RN123, USA
| | - Jim S Wu
- Department of Radiology, Massachusetts General Brigham (MGB), Harvard Medical School, 75 Francis Street, Boston, MA, 02215, USA
| | - Ara Nazarian
- Beth Israel Deaconess Medical Center (BIDMC), Carl J. Shapiro Department of Orthopedic Surgery, Harvard Medical School, 330 Brookline Avenue, Stoneman 10, Boston, MA, 02215, USA
- Musculoskeletal Translational Innovation Initiative, Beth Israel Deaconess Medical Center, Harvard Medical School, 330 Brookline Avenue, Boston, MA, RN123, USA
- Department of Orthopaedics Surgery, Yerevan State University, 0025, Yerevan, Armenia
| | - Ashkan Vaziri
- BioSensics, LLC, 57 Chapel Street, Newton, MA, 02458, USA
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Feng G, Gu Y, Wang C, Zhou Y, Huang S, Luo B. Wheat Fusarium Head Blight Automatic Non-Destructive Detection Based on Multi-Scale Imaging: A Technical Perspective. PLANTS (BASEL, SWITZERLAND) 2024; 13:1722. [PMID: 38999562 PMCID: PMC11243561 DOI: 10.3390/plants13131722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 06/17/2024] [Accepted: 06/19/2024] [Indexed: 07/14/2024]
Abstract
Fusarium head blight (FHB) is a major threat to global wheat production. Recent reviews of wheat FHB focused on pathology or comprehensive prevention and lacked a summary of advanced detection techniques. Unlike traditional detection and management methods, wheat FHB detection based on various imaging technologies has the obvious advantages of a high degree of automation and efficiency. With the rapid development of computer vision and deep learning technology, the number of related research has grown explosively in recent years. This review begins with an overview of wheat FHB epidemic mechanisms and changes in the characteristics of infected wheat. On this basis, the imaging scales are divided into microscopic, medium, submacroscopic, and macroscopic scales. Then, we outline the recent relevant articles, algorithms, and methodologies about wheat FHB from disease detection to qualitative analysis and summarize the potential difficulties in the practicalization of the corresponding technology. This paper could provide researchers with more targeted technical support and breakthrough directions. Additionally, this paper provides an overview of the ideal application mode of the FHB detection technologies based on multi-scale imaging and then examines the development trend of the all-scale detection system, which paved the way for the fusion of non-destructive detection technologies of wheat FHB based on multi-scale imaging.
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Affiliation(s)
- Guoqing Feng
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
- College of Agricultural Engineering, Jiangsu University, Zhenjiang 212000, China
| | - Ying Gu
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
| | - Cheng Wang
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
- College of Agricultural Engineering, Jiangsu University, Zhenjiang 212000, China
| | - Yanan Zhou
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
| | - Shuo Huang
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
| | - Bin Luo
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
- College of Agricultural Engineering, Jiangsu University, Zhenjiang 212000, China
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Yu H, Zhao H, Liu D, Dong Y, Nai M, Song Y, Liu J, Wang L, Li L, Li X. Prediction of myofascial pelvic pain syndrome based on random forest model. Heliyon 2024; 10:e31928. [PMID: 38868063 PMCID: PMC11167342 DOI: 10.1016/j.heliyon.2024.e31928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 05/23/2024] [Accepted: 05/24/2024] [Indexed: 06/14/2024] Open
Abstract
Objective The objective is to construct a random forest model for predicting the occurrence of Myofascial pelvic pain syndrome (MPPS) and compare its performance with a logistic regression model to demonstrate the superiority of the random forest model. Methods We retrospectively analyze the clinical data of female patients who underwent pelvic floor screening due to chronic pelvic pain at the Pelvic Floor Rehabilitation Center of the Third Affiliated Hospital of Zhengzhou University from January 2021 to December 2023. A total of 543 female patients meeting the study's inclusion and exclusion criteria are randomly selected from this dataset and allocated to the MPPS group. Furthermore, 702 healthy female patients who underwent pelvic floor screening during routine physical examinations within the same timeframe are randomly selected and assigned to the non-MPPS group. Chi-square test and rank-sum test are used to select demographic variables, pelvic floor pressure assessment data variables, and modified Oxford muscle strength grading data for logistic univariate analysis. The selected variables are further subjected to multivariate logistic regression analysis, and a random forest model is also established. The predictive performance of the two models is evaluated by comparing their accuracy, sensitivity, specificity, precision, receiver operating characteristic (ROC) curve, and area under the curve (AUC) area. Results Based on a dataset of 1245 cases, we implement the random forest algorithm for the first time in the screening of MPPS. In this investigation, the Logistic regression model forecasts the accuracy, sensitivity, specificity, and precision of MPPS at 69.96 %, 57.46 %, 79.63 %, and 68.57 % respectively, with an AUC of the ROC curve at 0.755. Conversely, the random forest prediction model exhibits accuracy, sensitivity, specificity, and precision rates of 87.11 %, 90.66 %, 90.91 %, and 83.51 % respectively, with an AUC of the ROC curve at 0.942. The random forest model showcases exceptional predictive performance during the initial screening of MPPS. Conclusion The random forest model has exhibited exceptional predictive performance in the initial screening evaluation of MPPS disease. The development of this predictive framework holds significant importance in refining the precision of MPPS prediction within clinical environments and elevating treatment outcomes. This research carries profound global implications, given the potentially elevated misdiagnosis rates and delayed diagnosis proportions of MPPS on a worldwide scale, coupled with a potential scarcity of seasoned healthcare providers. Moving forward, continual refinement and validation of the model will be imperative to further augment the precision of MPPS risk assessment, thereby furnishing clinicians with more dependable decision-making support in clinical practice.
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Affiliation(s)
- Hang Yu
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Hongguo Zhao
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Dongxia Liu
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Yanhua Dong
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Manman Nai
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Yikun Song
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Jiaxi Liu
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Luwen Wang
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Lei Li
- The Department of Obstetrics and Gynecology, The Third Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, PR China
| | - Xinbin Li
- School of Marine Science and Technology, Northwestern Polytechnical University, Xi'an, 710072, PR China
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14
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Zou C, Ji H, Cui J, Qian B, Chen YC, Zhang Q, He S, Sui Y, Bai Y, Zhong Y, Zhang X, Ni T, Che Z. Preliminary study on AI-assisted diagnosis of bone remodeling in chronic maxillary sinusitis. BMC Med Imaging 2024; 24:140. [PMID: 38858631 PMCID: PMC11165780 DOI: 10.1186/s12880-024-01316-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Accepted: 05/30/2024] [Indexed: 06/12/2024] Open
Abstract
OBJECTIVE To construct the deep learning convolution neural network (CNN) model and machine learning support vector machine (SVM) model of bone remodeling of chronic maxillary sinusitis (CMS) based on CT image data to improve the accuracy of image diagnosis. METHODS Maxillary sinus CT data of 1000 samples in 500 patients from January 2018 to December 2021 in our hospital was collected. The first part is the establishment and testing of chronic maxillary sinusitis detection model by 461 images. The second part is the establishment and testing of the detection model of chronic maxillary sinusitis with bone remodeling by 802 images. The sensitivity, specificity and accuracy and area under the curve (AUC) value of the test set were recorded, respectively. RESULTS Preliminary application results of CT based AI in the diagnosis of chronic maxillary sinusitis and bone remodeling. The sensitivity, specificity and accuracy of the test set of 93 samples of CMS, were 0.9796, 0.8636 and 0.9247, respectively. Simultaneously, the value of AUC was 0.94. And the sensitivity, specificity and accuracy of the test set of 161 samples of CMS with bone remodeling were 0.7353, 0.9685 and 0.9193, respectively. Simultaneously, the value of AUC was 0.89. CONCLUSION It is feasible to use artificial intelligence research methods such as deep learning and machine learning to automatically identify CMS and bone remodeling in MSCT images of paranasal sinuses, which is helpful to standardize imaging diagnosis and meet the needs of clinical application.
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Affiliation(s)
- Caiyun Zou
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China
| | - Hongbo Ji
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China
| | - Jie Cui
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China
| | - Bo Qian
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China
| | - Yu-Chen Chen
- Department of Radiology, Nanjing First Hospital, Nanjing Medical University, Nanjing, PR China
| | - Qingxiang Zhang
- Department of Otolaryngology Head and Neck Surgery, Nanjing Tongren Hospital, School of Medicine, Southeast University, Nanjing, PR China
| | - Shuangba He
- Department of Otolaryngology Head and Neck Surgery, Nanjing Tongren Hospital, School of Medicine, Southeast University, Nanjing, PR China
| | - Yang Sui
- School of Statistics and Management, Shanghai University of Finance and Economics, Shanghai, PR China
| | - Yang Bai
- School of Statistics and Management, Shanghai University of Finance and Economics, Shanghai, PR China
| | - Yeming Zhong
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China
| | - Xu Zhang
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China
| | - Ting Ni
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China
| | - Zigang Che
- Department of Radiology, Nanjing Tongren Hospital, School of Medicine, Southeast University, No. 2007, Ji Yin Avenue, Jiang Ning District, Nanjing, 211102, PR China.
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15
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Ge S, Wu K, Li S, Li R, Yang C. Machine learning methods for adult OSAHS risk prediction. BMC Health Serv Res 2024; 24:706. [PMID: 38840121 PMCID: PMC11151612 DOI: 10.1186/s12913-024-11081-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Accepted: 05/07/2024] [Indexed: 06/07/2024] Open
Abstract
BACKGROUND Obstructive sleep apnea hypopnea syndrome (OSAHS) is a common disease that can cause multiple organ damage in the whole body. Our aim was to use machine learning (ML) to build an independent polysomnography (PSG) model to analyze risk factors and predict OSAHS. MATERIALS AND METHODS Clinical data of 2064 snoring patients who underwent physical examination in the Health Management Center of the First Affiliated Hospital of Shanxi Medical University from July 2018 to July 2023 were retrospectively collected, involving 24 characteristic variables. Then they were randomly divided into training group and verification group according to the ratio of 7:3. By analyzing the importance of these features, it was concluded that LDL-C, Cr, common carotid artery plaque, A1c and BMI made major contributions to OSAHS. Moreover, five kinds of machine learning algorithm models such as logistic regression, support vector machine, Boosting, Random Forest and MLP were further established, and cross validation was used to adjust the model hyperparameters to determine the final prediction model. We compared the accuracy, Precision, Recall rate, F1-score and AUC indexes of the model, and finally obtained that MLP was the optimal model with an accuracy of 85.80%, Precision of 0.89, Recall of 0.75, F1-score of 0.82, and AUC of 0.938. CONCLUSION We established the risk prediction model of OSAHS using ML method, and proved that the MLP model performed best among the five ML models. This predictive model helps to identify patients with OSAHS and provide early, personalized diagnosis and treatment options.
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Affiliation(s)
- Shanshan Ge
- Health Management Center, the First Hospital of Shanxi Medical University, Taiyuan, 030001, China.
| | - Kainan Wu
- Health Management Center, the First Hospital of Shanxi Medical University, Taiyuan, 030001, China
| | - Shuhui Li
- Nursing College of Shanxi Medical University, Taiyuan, 030001, China
| | - Ruiling Li
- Nursing College of Shanxi Medical University, Taiyuan, 030001, China
| | - Caizheng Yang
- Nursing College of Shanxi Medical University, Taiyuan, 030001, China
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Isinkaye FO, Olusanya MO, Singh PK. Deep learning and content-based filtering techniques for improving plant disease identification and treatment recommendations: A comprehensive review. Heliyon 2024; 10:e29583. [PMID: 38737274 PMCID: PMC11088271 DOI: 10.1016/j.heliyon.2024.e29583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 03/30/2024] [Accepted: 04/10/2024] [Indexed: 05/14/2024] Open
Abstract
The importance of identifying plant diseases has risen recently due to the adverse effect they have on agricultutal production. Plant diseases have been a big concern in agriculture, as they affect crop production, and constitute a major threat to global food security. In the domain of modern agriculture, effective plant disease management is vital to ensure healthy crop yields and sustainable practices. Traditional means of identifying plant disease are faced with lots of challenges and the need for better and efficient detection methods cannot be overemphazised. The emergence of advanced technologies, particularly deep learning and content-based filtering techniques, if integrated together can changed the way plant diseases are identified and treated. Such as speedy and correct identification of plant diseases and efficient treatment recommendations which are keys for sustainable food production. In this work, We try to investigate the current state of research, identified gaps and limitations in knowledge, and suggests future directions for researchers, experts and farmers that could help to provide better ways of mitigating plant disease problems.
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Affiliation(s)
- Folasade Olubusola Isinkaye
- Department of Computer Science and Information Technology, Sol Plaatje University Kimberley, 8301, South Africa
| | - Michael Olusoji Olusanya
- Department of Computer Science and Information Technology, Sol Plaatje University Kimberley, 8301, South Africa
| | - Pramod Kumar Singh
- Department of Computer Science and Engineering, ABV-Indian Institute of Information Technology and Management Gwalior, Gwalior, 474015, MP, India
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Binson VA, Thomas S, Subramoniam M, Arun J, Naveen S, Madhu S. A Review of Machine Learning Algorithms for Biomedical Applications. Ann Biomed Eng 2024; 52:1159-1183. [PMID: 38383870 DOI: 10.1007/s10439-024-03459-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Accepted: 01/24/2024] [Indexed: 02/23/2024]
Abstract
As the amount and complexity of biomedical data continue to increase, machine learning methods are becoming a popular tool in creating prediction models for the underlying biomedical processes. Although all machine learning methods aim to fit models to data, the methodologies used can vary greatly and may seem daunting at first. A comprehensive review of various machine learning algorithms per biomedical applications is presented. The key concepts of machine learning are supervised and unsupervised learning, feature selection, and evaluation metrics. Technical insights on the major machine learning methods such as decision trees, random forests, support vector machines, and k-nearest neighbors are analyzed. Next, the dimensionality reduction methods like principal component analysis and t-distributed stochastic neighbor embedding methods, and their applications in biomedical data analysis were reviewed. Moreover, in biomedical applications predominantly feedforward neural networks, convolutional neural networks, and recurrent neural networks are utilized. In addition, the identification of emerging directions in machine learning methodology will serve as a useful reference for individuals involved in biomedical research, clinical practice, and related professions who are interested in understanding and applying machine learning algorithms in their research or practice.
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Affiliation(s)
- V A Binson
- Department of Electronics Engineering, Saintgits College of Engineering, Kottayam, India
| | - Sania Thomas
- Department of Computer Science and Engineering, Saintgits College of Engineering, Kottayam, India
| | - M Subramoniam
- Department of Electronics Engineering, Sathyabama Institute of Science and Technology, Chennai, Tamil Nadu, India
| | - J Arun
- Centre for Waste Management-International Research Centre, Sathyabama Institute of Science and Technology, Chennai, 600119, India
| | - S Naveen
- Department of Automobile Engineering, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, Tamil Nadu, India
| | - S Madhu
- Department of Automobile Engineering, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, Tamil Nadu, India.
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Saingam P, Jain T, Woicik A, Li B, Candry P, Redcorn R, Wang S, Himmelfarb J, Bryan A, Winkler MKH, Gattuso M. Integrating socio-economic vulnerability factors improves neighborhood-scale wastewater-based epidemiology for public health applications. WATER RESEARCH 2024; 254:121415. [PMID: 38479175 DOI: 10.1016/j.watres.2024.121415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2023] [Revised: 02/28/2024] [Accepted: 03/03/2024] [Indexed: 04/06/2024]
Abstract
Wastewater Based Epidemiology (WBE) of COVID-19 is a low-cost, non-invasive, and inclusive early warning tool for disease spread. Previously studied WBE focused on sampling at wastewater treatment plant scale, limiting the level at which demographic and geographic variations in disease dynamics can be incorporated into the analysis of certain neighborhoods. This study demonstrates the integration of demographic mapping to improve the WBE of COVID-19 and associated post-COVID disease prediction (here kidney disease) at the neighborhood level using machine learning. WBE was conducted at six neighborhoods in Seattle during October 2020 - February 2022. Wastewater processing and RT-qPCR were performed to obtain SARS-CoV-2 RNA concentration. Census data, clinical data of COVID-19, as well as patient data of acute kidney injury (AKI) cases reported during the study period were collected and the distribution across the city was studied using Geographic Information System (GIS) mapping. Further, we analyzed the data set to better understand socioeconomic impacts on disease prevalence of COVID-19 and AKI per neighborhood. The heterogeneity of eleven demographic factors (such as education and age among others) was observed within neighborhoods across the city of Seattle. Dynamics of COVID-19 clinical cases and wastewater SARS-CoV-2 varied across neighborhood with different levels of demographics. Machine learning models trained with data from the earlier stages of the pandemic were able to predict both COVID-19 and AKI incidence in the later stages of the pandemic (Spearman correlation coefficient of 0·546 - 0·904), with the most predictive model trained on the combination of wastewater data and demographics. The integration of demographics strengthened machine learning models' capabilities to predict prevalence of COVID-19, and of AKI as a marker for post-COVID sequelae. Demographic-based WBE presents an effective tool to monitor and manage public health beyond COVID-19 at the neighborhood level.
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Affiliation(s)
- Prakit Saingam
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States.
| | - Tanisha Jain
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - Addie Woicik
- Department of Computer Science & Engineering, University of Washington, Seattle, WA, United States
| | - Bo Li
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - Pieter Candry
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - Raymond Redcorn
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - Sheng Wang
- Department of Computer Science & Engineering, University of Washington, Seattle, WA, United States
| | - Jonathan Himmelfarb
- Kidney Research Institute, University of Washington, Seattle, WA, United States; Center for Dialysis Innovation, University of Washington, Seattle, WA, United States
| | - Andrew Bryan
- Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA, United States
| | - Mari K H Winkler
- Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, United States
| | - Meghan Gattuso
- Seattle Public Utilities, Project Delivery and Engineering, 700 5th Ave, Seattle, WA 98104, United States
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Tariq MU, Ismail SB. AI-powered COVID-19 forecasting: a comprehensive comparison of advanced deep learning methods. Osong Public Health Res Perspect 2024; 15:115-136. [PMID: 38621765 PMCID: PMC11082441 DOI: 10.24171/j.phrp.2023.0287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 01/07/2024] [Accepted: 01/26/2024] [Indexed: 04/17/2024] Open
Abstract
BACKGROUND The coronavirus disease 2019 (COVID-19) pandemic continues to pose significant challenges to the public health sector, including that of the United Arab Emirates (UAE). The objective of this study was to assess the efficiency and accuracy of various deep-learning models in forecasting COVID-19 cases within the UAE, thereby aiding the nation's public health authorities in informed decision-making. METHODS This study utilized a comprehensive dataset encompassing confirmed COVID-19 cases, demographic statistics, and socioeconomic indicators. Several advanced deep learning models, including long short-term memory (LSTM), bidirectional LSTM, convolutional neural network (CNN), CNN-LSTM, multilayer perceptron, and recurrent neural network (RNN) models, were trained and evaluated. Bayesian optimization was also implemented to fine-tune these models. RESULTS The evaluation framework revealed that each model exhibited different levels of predictive accuracy and precision. Specifically, the RNN model outperformed the other architectures even without optimization. Comprehensive predictive and perspective analytics were conducted to scrutinize the COVID-19 dataset. CONCLUSION This study transcends academic boundaries by offering critical insights that enable public health authorities in the UAE to deploy targeted data-driven interventions. The RNN model, which was identified as the most reliable and accurate for this specific context, can significantly influence public health decisions. Moreover, the broader implications of this research validate the capability of deep learning techniques in handling complex datasets, thus offering the transformative potential for predictive accuracy in the public health and healthcare sectors.
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Affiliation(s)
- Muhammad Usman Tariq
- Marketing, Operations, and Information System, Abu Dhabi University, Abu Dhabi, United Arab Emirates
- Faculty of Computer Science and Information Technology, Univesiti Tun Hussien Onn Malaysia, Parit Raja, Malaysia
| | - Shuhaida Binti Ismail
- Faculty of Computer Science and Information Technology, Univesiti Tun Hussien Onn Malaysia, Parit Raja, Malaysia
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Lu Y, Lu X, Zheng L, Sun M, Chen S, Chen B, Wang T, Yang J, Lv C. Application of Multimodal Transformer Model in Intelligent Agricultural Disease Detection and Question-Answering Systems. PLANTS (BASEL, SWITZERLAND) 2024; 13:972. [PMID: 38611501 PMCID: PMC11013167 DOI: 10.3390/plants13070972] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 03/22/2024] [Accepted: 03/24/2024] [Indexed: 04/14/2024]
Abstract
In this study, an innovative approach based on multimodal data and the transformer model was proposed to address challenges in agricultural disease detection and question-answering systems. This method effectively integrates image, text, and sensor data, utilizing deep learning technologies to profoundly analyze and process complex agriculture-related issues. The study achieved technical breakthroughs and provides new perspectives and tools for the development of intelligent agriculture. In the task of agricultural disease detection, the proposed method demonstrated outstanding performance, achieving a precision, recall, and accuracy of 0.95, 0.92, and 0.94, respectively, significantly outperforming the other conventional deep learning models. These results indicate the method's effectiveness in identifying and accurately classifying various agricultural diseases, particularly excelling in handling subtle features and complex data. In the task of generating descriptive text from agricultural images, the method also exhibited impressive performance, with a precision, recall, and accuracy of 0.92, 0.88, and 0.91, respectively. This demonstrates that the method can not only deeply understand the content of agricultural images but also generate accurate and rich descriptive texts. The object detection experiment further validated the effectiveness of our approach, where the method achieved a precision, recall, and accuracy of 0.96, 0.91, and 0.94. This achievement highlights the method's capability for accurately locating and identifying agricultural targets, especially in complex environments. Overall, the approach in this study not only demonstrated exceptional performance in multiple tasks such as agricultural disease detection, image captioning, and object detection but also showcased the immense potential of multimodal data and deep learning technologies in the application of intelligent agriculture.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Chunli Lv
- China Agricultural University, Beijing 100083, China
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21
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Ayub Khan A, Laghari AA, M. Baqasah A, Alroobaea R, Almadhor A, Avelino Sampedro G, Kryvinska N. Blockchain-enabled infrastructural security solution for serverless consortium fog and edge computing. PeerJ Comput Sci 2024; 10:e1933. [PMID: 38660154 PMCID: PMC11041953 DOI: 10.7717/peerj-cs.1933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Accepted: 02/18/2024] [Indexed: 04/26/2024]
Abstract
The robust development of the blockchain distributed ledger, the Internet of Things (IoT), and fog computing-enabled connected devices and nodes has changed our lifestyle nowadays. Due to this, the increased rate of device sales and utilization increases the demand for edge computing technology with collaborative procedures. However, there is a well-established paradigm designed to optimize various distinct quality-of-service requirements, including bandwidth, latency, transmission power, delay, duty cycle, throughput, response, and edge sense, and bring computation and data storage closer to the devices and edges, along with ledger security and privacy during transmission. In this article, we present a systematic review of blockchain Hyperledger enabling fog and edge computing, which integrates as an outsourcing computation over the serverless consortium network environment. The main objective of this article is to classify recently published articles and survey reports on the current status in the domain of edge distributed computing and outsourcing computation, such as fog and edge. In addition, we proposed a blockchain-Hyperledger Sawtooth-enabled serverless edge-based distributed outsourcing computation architecture. This theoretical architecture-based solution delivers robust data security in terms of integrity, transparency, provenance, and privacy-protected preservation in the immutable storage to store the outsourcing computational ledgers. This article also highlights the changes between the proposed taxonomy and the current system based on distinct parameters, such as system security and privacy. Finally, a few open research issues and limitations with promising future directions are listed for future research work.
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Affiliation(s)
- Abdullah Ayub Khan
- Department of Computer Science, Benazir Bhutto Shaheed University Lyari, Karachi, Sindh, Pakistan
- Department of Computer Science, Sindh Madressatul Islam University, Karachi, Sindh, Pakistan
| | | | - Abdullah M. Baqasah
- Department of Information Technology, College of Computers and Information Technology, Taif University, Taif, Saudi Arabia
| | - Roobaea Alroobaea
- Department of Computer Science, College of Computers and Information Technology, Taif University, Taif, Saudi Arabia
| | - Ahmad Almadhor
- Department of Computer Engineering and Networks, College of Computer and Information Sciences, Jouf University, Sakaka, Saudi Arabia
| | - Gabriel Avelino Sampedro
- Center for Computational Imaging and Visual Innovations, De La Salle University, Manila, Philippines
- Faculty of Information and Communication Studies, University of the Philippines Open University, Los Baños, Philippines
| | - Natalia Kryvinska
- Department of Information Management and Business Systems, Faculty of Management, Comenius University Bratislava, Bratislava, Slovakia
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Song TH, Clemente L, Pan X, Jang J, Santillana M, Lee K. Fine-Grained Forecasting of COVID-19 Trends at the County Level in the United States. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.01.13.24301248. [PMID: 38293076 PMCID: PMC10827234 DOI: 10.1101/2024.01.13.24301248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
The novel coronavirus (COVID-19) pandemic, first identified in Wuhan China in December 2019, has profoundly impacted various aspects of daily life, society, healthcare systems, and global health policies. There have been more than half a billion human infections and more than 6 million deaths globally attributable to COVID-19. Although treatments and vaccines to protect against COVID-19 are now available, people continue being hospitalized and dying due to COVID-19 infections. Real-time surveillance of population-level infections, hospitalizations, and deaths has helped public health officials better allocate healthcare resources and deploy mitigation strategies. However, producing reliable, real-time, short-term disease activity forecasts (one or two weeks into the future) remains a practical challenge. The recent emergence of robust time-series forecasting methodologies based on deep learning approaches has led to clear improvements in multiple research fields. We propose a recurrent neural network model named Fine-Grained Infection Forecast Network (FIGI-Net), which utilizes a stacked bidirectional LSTM structure designed to leverage fine-grained county-level data, to produce daily forecasts of COVID-19 infection trends up to two weeks in advance. We show that FIGI-Net improves existing COVID-19 forecasting approaches and delivers accurate county-level COVID-19 disease estimates. Specifically, FIGI-Net is capable of anticipating upcoming sudden changes in disease trends such as the onset of a new outbreak or the peak of an ongoing outbreak, a skill that multiple existing state-of-the-art models fail to achieve. This improved performance is observed across locations and periods. Our enhanced forecasting methodologies may help protect human populations against future disease outbreaks.
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Affiliation(s)
- Tzu-Hsi Song
- Vascular Biology Program and Department of Surgery, Boston Children’s Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Leonardo Clemente
- Department of Physics and Department of Electrical and Computer Engineering, Northeastern University, Boston, MA 02115, USA
| | - Xiang Pan
- Vascular Biology Program and Department of Surgery, Boston Children’s Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Junbong Jang
- Vascular Biology Program and Department of Surgery, Boston Children’s Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Mauricio Santillana
- Department of Physics and Department of Electrical and Computer Engineering, Northeastern University, Boston, MA 02115, USA
| | - Kwonmoo Lee
- Vascular Biology Program and Department of Surgery, Boston Children’s Hospital, Harvard Medical School, Boston, MA 02115, USA
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Ejiyi CJ, Qin Z, Ukwuoma CC, Nneji GU, Monday HN, Ejiyi MB, Ejiyi TU, Okechukwu U, Bamisile OO. Comparative performance analysis of Boruta, SHAP, and Borutashap for disease diagnosis: A study with multiple machine learning algorithms. NETWORK (BRISTOL, ENGLAND) 2024:1-38. [PMID: 38511557 DOI: 10.1080/0954898x.2024.2331506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Accepted: 03/13/2024] [Indexed: 03/22/2024]
Abstract
Interpretable machine learning models are instrumental in disease diagnosis and clinical decision-making, shedding light on relevant features. Notably, Boruta, SHAP (SHapley Additive exPlanations), and BorutaShap were employed for feature selection, each contributing to the identification of crucial features. These selected features were then utilized to train six machine learning algorithms, including LR, SVM, ETC, AdaBoost, RF, and LR, using diverse medical datasets obtained from public sources after rigorous preprocessing. The performance of each feature selection technique was evaluated across multiple ML models, assessing accuracy, precision, recall, and F1-score metrics. Among these, SHAP showcased superior performance, achieving average accuracies of 80.17%, 85.13%, 90.00%, and 99.55% across diabetes, cardiovascular, statlog, and thyroid disease datasets, respectively. Notably, the LGBM emerged as the most effective algorithm, boasting an average accuracy of 91.00% for most disease states. Moreover, SHAP enhanced the interpretability of the models, providing valuable insights into the underlying mechanisms driving disease diagnosis. This comprehensive study contributes significant insights into feature selection techniques and machine learning algorithms for disease diagnosis, benefiting researchers and practitioners in the medical field. Further exploration of feature selection methods and algorithms holds promise for advancing disease diagnosis methodologies, paving the way for more accurate and interpretable diagnostic models.
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Affiliation(s)
- Chukwuebuka Joseph Ejiyi
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, China
| | - Zhen Qin
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, China
| | - Chiagoziem Chima Ukwuoma
- School of Information and Software Engineering, University of Electronic Science and Technology of China, Chengdu, China
| | - Grace Ugochi Nneji
- Software Engineering Department, Sino-British Collaborative Education, Chengdu University of Technology, Oxford Brookes University, Chengdu, China
| | - Happy Nkanta Monday
- Software Engineering Department, Sino-British Collaborative Education, Chengdu University of Technology, Oxford Brookes University, Chengdu, China
| | | | - Thomas Ugochukwu Ejiyi
- Department of Pure and Industrial Chemistry, University of Nigeria Nsukka, Enugu, Nigeria
| | | | - Olusola O Bamisile
- Sichuan Industrial Internet Intelligent Monitoring and Application Engineering Technology Research Centre, Chengdu University of Technology, Chengdu, China
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24
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Marinda E, Mathentamo Q, Coulson N, Parker S, Dmc Katoto P, Houston G, Magampa M, Pillay N, Ngungu M, Wiysonge CS, van Rooyen H. Impact evaluation of a youth led intervention to increase COVID-19 vaccine uptake in Kwazulu-Natal, South Africa. Vaccine 2024; 42:2089-2098. [PMID: 38423816 DOI: 10.1016/j.vaccine.2024.02.052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 02/14/2024] [Accepted: 02/17/2024] [Indexed: 03/02/2024]
Abstract
BACKGROUND COVID-19 vaccination rates in South Africa remain low at 51% of the adult population being fully vaccinated, defined as having two shorts of the COVID-19 vaccine with or without a booster. To improve vaccine uptake, a community-based intervention was tested in a high vaccine hesitancy community in South Africa. Trained community youths used social media, face to face interactions, door to door and neighbourhood outreach activities to deliver the intervention. METHODS To assess if the intervention had an impact, data was collected before the intervention and after the intervention in two districts, Wentworth an intervention site and Newlands East a control site. Both districts are in KwaZulu Natal Province, South Africa. The following outcomes, changes on perceptions and knowledge about COVID-19, intention to get vaccinated for those who were not fully vaccinated and vaccination uptake were assessed using difference-in-difference methods applied through Augmented Inverse-Probability Weighting and contrasts of Potential Outcome Means (POM). RESULTS One thousand, one hundred and fifty (1 150) participants agreed to take part in the study at baseline, and 916 (80%) were followed up after the 9-week intervention period. Intention to get vaccinated for COVID-19 was higher (difference-in-difference, DID 20%, 95% CI 6% - 35% higher), more people were fully vaccinated (DID 10%, 95% CI 0% - 20%) or partially vaccinated (DID 16%, 95% CI 6% - 26%) in Wentworth the intervention site compared to Newlands East, the control site. There were noticeable increases on the percentage of study participants indicating trust on the Government's COVID 19 programme, from 24% at baseline to 48% after the intervention in the intervention group than in the control group, 26% baseline and 29% at follow-up. There was a 10% (absolute) increase on the percentage of participants' saying they believed health care workers provided reliable information, 58% at baseline and 68% at follow-up in the intervention group, but there was little change in the control group 56% and 57% for baseline and follow-up respectively. CONCLUSION The youth-led intervention implemented in Wentworth, a community with a high rate of vaccine hesitancy, was effective in increasing vaccination uptake. Given the low COVID-19 vaccine coverage in South Africa and across the African region, as well as the new emerging variant of concern (XBB 1.5), there is an urgent need to scale up such intervention at the community level to address persistent misinformation and promote vaccine equality.
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Affiliation(s)
- Edmore Marinda
- Human Sciences Research Council, Pretoria, South Africa; School of Public Health, University of the Witwatersrand, Johannesburg 2050, South Africa.
| | | | - Nancy Coulson
- The Sarraounia Public Health Trust, Johannesburg 2193, South Africa; Wits Mining Institute, University of the Witwatersrand, Johannesburg 2050, South Africa
| | | | - Patrick Dmc Katoto
- Cochrane South Africa, South African Medical Research Council, Cape Town 7501, South Africa; Department of Global Health, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town 7505, South Africa; Centre for General Medicine and Global Health, Department of Medicine, University of Cape Town, Cape Town 7505, South Africa
| | | | | | - Nirvana Pillay
- School of Public Health, University of the Witwatersrand, Johannesburg 2050, South Africa; The Sarraounia Public Health Trust, Johannesburg 2193, South Africa
| | - Mercy Ngungu
- Human Sciences Research Council, Pretoria, South Africa
| | - Charles S Wiysonge
- Cochrane South Africa, South African Medical Research Council, Cape Town 7501, South Africa; HIV and Other Infectious Diseases Research Unit, South African Medical Research Council, Durban, 4001, South Africa
| | - Heidi van Rooyen
- Human Sciences Research Council, Pretoria, South Africa; SAMRC-Wits Developmental Pathways for Health Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg 2050, South Africa
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25
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Liu X, Tian J, Duan P, Yu Q, Wang G, Wang Y. GrMoNAS: A granularity-based multi-objective NAS framework for efficient medical diagnosis. Comput Biol Med 2024; 171:108118. [PMID: 38394799 DOI: 10.1016/j.compbiomed.2024.108118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 01/31/2024] [Accepted: 02/04/2024] [Indexed: 02/25/2024]
Abstract
Neural Architecture Search (NAS) has been widely applied to automate medical image diagnostics. However, traditional NAS methods require significant computational resources and time for performance evaluation. To address this, we introduce the GrMoNAS framework, designed to balance diagnostic accuracy and efficiency using proxy datasets for granularity transformation and multi-objective optimization algorithms. The approach initiates with a coarse granularity phase, wherein diverse candidate neural architectures undergo evaluation utilizing a reduced proxy dataset. This initial phase facilitates the swift and effective identification of architectures exhibiting promise. Subsequently, in the fine granularity phase, a comprehensive validation and optimization process is undertaken for these identified architectures. Concurrently, employing multi-objective optimization and Pareto frontier sorting aims to enhance both accuracy and computational efficiency simultaneously. Importantly, the GrMoNAS framework is particularly suitable for hospitals with limited computational resources. We evaluated GrMoNAS in a range of medical scenarios, such as COVID-19, Skin cancer, Lung, Colon, and Acute Lymphoblastic Leukemia diseases, comparing it against traditional models like VGG16, VGG19, and recent NAS approaches including GA-CNN, EBNAS, NEXception, and CovNAS. The results show that GrMoNAS achieves comparable or superior diagnostic precision, significantly enhancing diagnostic efficiency. Moreover, GrMoNAS effectively avoids local optima, indicating its significant potential for precision medical diagnosis.
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Affiliation(s)
- Xin Liu
- College of Information Science and Engineering, Shandong Normal University, Street, Jinan, 250358, Shandong, China.
| | - Jie Tian
- College of Data Science and Computer Science, Shandong Women's University, Street, Jinan, 250300, Shandong, China.
| | - Peiyong Duan
- College of Information Science and Engineering, Shandong Normal University, Street, Jinan, 250358, Shandong, China.
| | - Qian Yu
- College of Data Science and Computer Science, Shandong Women's University, Street, Jinan, 250300, Shandong, China.
| | - Gaige Wang
- School of Computer Science and Technology, Ocean University of China, Street, Qingdao, 266100, Shandong, China.
| | - Yingjie Wang
- College of Computer and Control Engineering, Yantai University, Street, Yantai, 264005, Shandong, China.
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26
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Auliya AA, Syafarina I, Latifah AL, Wiharto. Significance of weather condition, human mobility, and vaccination on global COVID-19 transmission. Spat Spatiotemporal Epidemiol 2024; 48:100635. [PMID: 38355259 DOI: 10.1016/j.sste.2024.100635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 01/03/2024] [Accepted: 01/15/2024] [Indexed: 02/16/2024]
Abstract
The transmission growth rate of infectious diseases, particularly COVID-19, has forced governments to take immediate control decisions. Previous studies have shown that human mobility, weather condition, and vaccination are potential factors influencing virus transmission. This study investigates the contribution of weather conditions, namely temperature and precipitation, human mobility, and vaccination to coronavirus transmission. Three machine learning models: random forest (RF), XGBoost, and neural networks, are applied to predict the confirmed cases based on three aforementioned variables. All models' prediction are evaluated via spatial and temporal analysis. The spatial analysis observes the model performance over countries on certain times. The temporal analysis looks at the model prediction of each country during the specified period. The models' prediction results effectively indicate the transmission trend. The RF model performs best with a coefficient of determination of up to 89%. Meanwhile, all models confirm that vaccination is most significantly associated with COVID-19 cases.
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Affiliation(s)
- Amandha Affa Auliya
- Research Center for Computing, National Research and Innovation Agency, Jl. Raya Jakarta Bogor KM 46, Cibinong, 16911, Indonesia; Sebelas Maret University, Jl. Ir Sutami No. 36, Surakarta, 57126, Indonesia
| | - Inna Syafarina
- Research Center for Computing, National Research and Innovation Agency, Jl. Raya Jakarta Bogor KM 46, Cibinong, 16911, Indonesia
| | - Arnida L Latifah
- Research Center for Computing, National Research and Innovation Agency, Jl. Raya Jakarta Bogor KM 46, Cibinong, 16911, Indonesia; School of Computing, Telkom University, Jl. Telekomunikasi No. 1, Bandung, 40257, Indonesia.
| | - Wiharto
- Sebelas Maret University, Jl. Ir Sutami No. 36, Surakarta, 57126, Indonesia
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27
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Li J, Jiang P, An Q, Wang GG, Kong HF. Medical image identification methods: A review. Comput Biol Med 2024; 169:107777. [PMID: 38104516 DOI: 10.1016/j.compbiomed.2023.107777] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 10/30/2023] [Accepted: 11/28/2023] [Indexed: 12/19/2023]
Abstract
The identification of medical images is an essential task in computer-aided diagnosis, medical image retrieval and mining. Medical image data mainly include electronic health record data and gene information data, etc. Although intelligent imaging provided a good scheme for medical image analysis over traditional methods that rely on the handcrafted features, it remains challenging due to the diversity of imaging modalities and clinical pathologies. Many medical image identification methods provide a good scheme for medical image analysis. The concepts pertinent of methods, such as the machine learning, deep learning, convolutional neural networks, transfer learning, and other image processing technologies for medical image are analyzed and summarized in this paper. We reviewed these recent studies to provide a comprehensive overview of applying these methods in various medical image analysis tasks, such as object detection, image classification, image registration, segmentation, and other tasks. Especially, we emphasized the latest progress and contributions of different methods in medical image analysis, which are summarized base on different application scenarios, including classification, segmentation, detection, and image registration. In addition, the applications of different methods are summarized in different application area, such as pulmonary, brain, digital pathology, brain, skin, lung, renal, breast, neuromyelitis, vertebrae, and musculoskeletal, etc. Critical discussion of open challenges and directions for future research are finally summarized. Especially, excellent algorithms in computer vision, natural language processing, and unmanned driving will be applied to medical image recognition in the future.
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Affiliation(s)
- Juan Li
- School of Information Engineering, Wuhan Business University, Wuhan, 430056, China; School of Artificial Intelligence, Wuchang University of Technology, Wuhan, 430223, China; Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, 130012, China
| | - Pan Jiang
- School of Information Engineering, Wuhan Business University, Wuhan, 430056, China
| | - Qing An
- School of Artificial Intelligence, Wuchang University of Technology, Wuhan, 430223, China
| | - Gai-Ge Wang
- School of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China.
| | - Hua-Feng Kong
- School of Information Engineering, Wuhan Business University, Wuhan, 430056, China.
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28
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Aluri S, Imambi SS. Brain tumour classification using MRI images based on lenet with golden teacher learning optimization. NETWORK (BRISTOL, ENGLAND) 2024; 35:27-54. [PMID: 37947040 DOI: 10.1080/0954898x.2023.2275720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 10/22/2023] [Indexed: 11/12/2023]
Abstract
Brain tumour (BT) is a dangerous neurological disorder produced by abnormal cell growth within the skull or brain. Nowadays, the death rate of people with BT is linearly growing. The finding of tumours at an early stage is crucial for giving treatment to patients, which improves the survival rate of patients. Hence, the BT classification (BTC) is done in this research using magnetic resonance imaging (MRI) images. In this research, the input MRI image is pre-processed using a non-local means (NLM) filter that denoises the input image. For attaining the effective classified result, the tumour area from the MRI image is segmented by the SegNet model. Furthermore, the BTC is accomplished by the LeNet model whose weight is optimized by the Golden Teacher Learning Optimization Algorithm (GTLO) such that the classified output produced by the LeNet model is Gliomas, Meningiomas, and Pituitary tumours. The experimental outcome displays that the GTLO-LeNet achieved an Accuracy of 0.896, Negative Predictive value (NPV) of 0.907, Positive Predictive value (PPV) of 0.821, True Negative Rate (TNR) of 0.880, and True Positive Rate (TPR) of 0.888.
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Affiliation(s)
- Srilakshmi Aluri
- Research Scholar, Computer Science & Engineering, K L Educational foundation, deemed to be University, Vaddeswaram, India
| | - Sagar S Imambi
- Professor, Computer Science and Engineering, K L Educational foundation, deemed to be University, Vaddeswaram, India
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29
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Mathieu L, Reder M, Siah A, Ducasse A, Langlands-Perry C, Marcel TC, Morel JB, Saintenac C, Ballini E. SeptoSympto: a precise image analysis of Septoria tritici blotch disease symptoms using deep learning methods on scanned images. PLANT METHODS 2024; 20:18. [PMID: 38297386 PMCID: PMC10832182 DOI: 10.1186/s13007-024-01136-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 01/07/2024] [Indexed: 02/02/2024]
Abstract
BACKGROUND Investigations on plant-pathogen interactions require quantitative, accurate, and rapid phenotyping of crop diseases. However, visual assessment of disease symptoms is preferred over available numerical tools due to transferability challenges. These assessments are laborious, time-consuming, require expertise, and are rater dependent. More recently, deep learning has produced interesting results for evaluating plant diseases. Nevertheless, it has yet to be used to quantify the severity of Septoria tritici blotch (STB) caused by Zymoseptoria tritici-a frequently occurring and damaging disease on wheat crops. RESULTS We developed an image analysis script in Python, called SeptoSympto. This script uses deep learning models based on the U-Net and YOLO architectures to quantify necrosis and pycnidia on detached, flattened and scanned leaves of wheat seedlings. Datasets of different sizes (containing 50, 100, 200, and 300 leaves) were annotated to train Convolutional Neural Networks models. Five different datasets were tested to develop a robust tool for the accurate analysis of STB symptoms and facilitate its transferability. The results show that (i) the amount of annotated data does not influence the performances of models, (ii) the outputs of SeptoSympto are highly correlated with those of the experts, with a similar magnitude to the correlations between experts, and (iii) the accuracy of SeptoSympto allows precise and rapid quantification of necrosis and pycnidia on both durum and bread wheat leaves inoculated with different strains of the pathogen, scanned with different scanners and grown under different conditions. CONCLUSIONS SeptoSympto takes the same amount of time as a visual assessment to evaluate STB symptoms. However, unlike visual assessments, it allows for data to be stored and evaluated by experts and non-experts in a more accurate and unbiased manner. The methods used in SeptoSympto make it a transferable, highly accurate, computationally inexpensive, easy-to-use, and adaptable tool. This study demonstrates the potential of using deep learning to assess complex plant disease symptoms such as STB.
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Affiliation(s)
- Laura Mathieu
- PHIM Plant Health Institute, Univ Montpellier, INRAE, CIRAD, Institut Agro, IRD, Montpellier, France.
| | - Maxime Reder
- PHIM Plant Health Institute, Univ Montpellier, INRAE, CIRAD, Institut Agro, IRD, Montpellier, France
| | - Ali Siah
- BioEcoAgro, Junia, Lille University, Liège University, UPJV, Artois University, ULCO, INRAE, Lille, France
| | - Aurélie Ducasse
- PHIM Plant Health Institute, Univ Montpellier, INRAE, CIRAD, Institut Agro, IRD, Montpellier, France
| | | | | | - Jean-Benoît Morel
- PHIM Plant Health Institute, Univ Montpellier, INRAE, CIRAD, Institut Agro, IRD, Montpellier, France
| | | | - Elsa Ballini
- PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, IRD, Institut Agro, Montpellier, France.
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30
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Liu B, Wei S, Zhang F, Guo N, Fan H, Yao W. Tomato leaf disease recognition based on multi-task distillation learning. FRONTIERS IN PLANT SCIENCE 2024; 14:1330527. [PMID: 38352252 PMCID: PMC10862124 DOI: 10.3389/fpls.2023.1330527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 12/28/2023] [Indexed: 02/16/2024]
Abstract
Introduction Tomato leaf diseases can cause major yield and quality losses. Computer vision techniques for automated disease recognition show promise but face challenges like symptom variations, limited labeled data, and model complexity. Methods Prior works explored hand-crafted and deep learning features for tomato disease classification and multi-task severity prediction, but did not sufficiently exploit the shared and unique knowledge between these tasks. We present a novel multi-task distillation learning (MTDL) framework for comprehensive diagnosis of tomato leaf diseases. It employs knowledge disentanglement, mutual learning, and knowledge integration through a multi-stage strategy to leverage the complementary nature of classification and severity prediction. Results Experiments show our framework improves performance while reducing model complexity. The MTDL-optimized EfficientNet outperforms single-task ResNet101 in classification accuracy by 0.68% and severity estimation by 1.52%, using only 9.46% of its parameters. Discussion The findings demonstrate the practical potential of our framework for intelligent agriculture applications.
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Affiliation(s)
- Bo Liu
- College of Information Science and Technology, Hebei Agricultural University, Baoding, China
- Hebei Key Laboratory of Agricultural Big Data, Baoding, China
| | - Shusen Wei
- College of Information Science and Technology, Hebei Agricultural University, Baoding, China
- Hebei Key Laboratory of Agricultural Big Data, Baoding, China
| | - Fan Zhang
- College of Information Science and Technology, Hebei Agricultural University, Baoding, China
- Hebei Key Laboratory of Agricultural Big Data, Baoding, China
| | - Nawei Guo
- College of Information Science and Technology, Hebei Agricultural University, Baoding, China
- Hebei Key Laboratory of Agricultural Big Data, Baoding, China
| | - Hongyu Fan
- College of Information Science and Technology, Hebei Agricultural University, Baoding, China
- Hebei Key Laboratory of Agricultural Big Data, Baoding, China
| | - Wei Yao
- College of Information Science and Technology, Hebei Agricultural University, Baoding, China
- Hebei Key Laboratory of Agricultural Big Data, Baoding, China
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Haque UM, Kabir E, Khanam R. Investigating school absenteeism and refusal among Australian children and adolescents using Apriori association rule mining. Sci Rep 2024; 14:1907. [PMID: 38253599 PMCID: PMC10803378 DOI: 10.1038/s41598-024-51230-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 01/02/2024] [Indexed: 01/24/2024] Open
Abstract
Identifying and determining the multitude of reasons behind school absences of students is often challenging. This study aims to uncover the hidden reasons for school absence in children and adolescents. The analysis is conducted on a national survey that includes 2967 Australian children and adolescents aged 11-17. The Apriori association rule generator of machine learning techniques and binary logistic regression are used to identify the significant predictors of school absences. Out of 2484, 83.7% (n = 2079) aged (11-17) years children and adolescents have missed school for various reasons, 42.28% (n = 879) are (11-15) years old, 24.52% (n = 609) and 16.9% (n = 420) are 16- and 17-years old adolescents respectively. A considerable proportion of adolescents, specifically 16.4% (n = 407) and 23.4% (n = 486) of 16 and 17 years old, respectively, have selected 'refused to say' as their reason for not attending school. It also highlights the negative outcomes associated with undisclosed reasons for school absence, such as bullying, excessive internet/gaming, reduced family involvement, suicide attempts, and existential hopelessness. The findings of the national survey underscore the importance of addressing these undisclosed reasons for school absence to improve the overall well-being and educational outcomes of children and adolescents.
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Affiliation(s)
- Umme Marzia Haque
- School of Mathematics, Physics and Computing, University of Southern Queensland, Toowoomba, Australia.
| | - Enamul Kabir
- School of Mathematics, Physics and Computing, University of Southern Queensland, Toowoomba, Australia
| | - Rasheda Khanam
- School of Business, University of Southern Queensland, Toowoomba, Australia
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Usman M, Mujahid M, Rustam F, Flores E, Vidal Mazón JL, Díez IDLT, Ashraf I. Analyzing patients satisfaction level for medical services using twitter data. PeerJ Comput Sci 2024; 10:e1697. [PMID: 38259896 PMCID: PMC10803080 DOI: 10.7717/peerj-cs.1697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 10/23/2023] [Indexed: 01/24/2024]
Abstract
Public concern regarding health systems has experienced a rapid surge during the last two years due to the COVID-19 outbreak. Accordingly, medical professionals and health-related institutions reach out to patients and seek feedback to analyze, monitor, and uplift medical services. Such views and perceptions are often shared on social media platforms like Facebook, Instagram, Twitter, etc. Twitter is the most popular and commonly used by the researcher as an online platform for instant access to real-time news, opinions, and discussion. Its trending hashtags (#) and viral content make it an ideal hub for monitoring public opinion on a variety of topics. The tweets are extracted using three hashtags #healthcare, #healthcare services, and #medical facilities. Also, location and tweet sentiment analysis are considered in this study. Several recent studies deployed Twitter datasets using ML and DL models, but the results show lower accuracy. In addition, the studies did not perform extensive comparative analysis and lack validation. This study addresses two research questions: first, what are the sentiments of people toward medical services worldwide? and second, how effective are the machine learning and deep learning approaches for the classification of sentiment on healthcare tweets? Experiments are performed using several well-known machine learning models including support vector machine, logistic regression, Gaussian naive Bayes, extra tree classifier, k nearest neighbor, random forest, decision tree, and AdaBoost. In addition, this study proposes a transfer learning-based LSTM-ETC model that effectively predicts the customer's satisfaction level from the healthcare dataset. Results indicate that despite the best performance by the ETC model with an 0.88 accuracy score, the proposed model outperforms with a 0.95 accuracy score. Predominantly, the people are happy about the provided medical services as the ratio of the positive sentiments is substantially higher than the negative sentiments. The sentiments, either positive or negative, play a crucial role in making important decisions through customer feedback and enhancing quality.
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Affiliation(s)
- Muhammad Usman
- Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Muhammad Mujahid
- Khwaja Fareed University of Engineering and Information Technology, Rahim Yar Khan, Pakistan
| | - Furqan Rustam
- Department of Software Engineering, University of Management & Technology, Lahore, Lahore, Pakistan
| | - EmmanuelSoriano Flores
- Universidad Europea Del Atlantico, Santander, Spain
- Department of Project Management, Universidad Internacional Iberoamericana (UNINI-MX), Campeche, Mexico
| | - Juan Luis Vidal Mazón
- Universidad Europea Del Atlantico, Santander, Spain
- Universidade Internacional do Cuanza, Municipio do Kuito, Bairro Sede, Angola
| | | | - Imran Ashraf
- Information and Communication Engineering, Yeungnam University, Gyeongsan si, South Korea
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Bedi P, Gole P, Marwaha S. PDSE-Lite: lightweight framework for plant disease severity estimation based on Convolutional Autoencoder and Few-Shot Learning. FRONTIERS IN PLANT SCIENCE 2024; 14:1319894. [PMID: 38259916 PMCID: PMC10800669 DOI: 10.3389/fpls.2023.1319894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 12/12/2023] [Indexed: 01/24/2024]
Abstract
Plant disease diagnosis with estimation of disease severity at early stages still remains a significant research challenge in agriculture. It is helpful in diagnosing plant diseases at the earliest so that timely action can be taken for curing the disease. Existing studies often rely on labor-intensive manually annotated large datasets for disease severity estimation. In order to conquer this problem, a lightweight framework named "PDSE-Lite" based on Convolutional Autoencoder (CAE) and Few-Shot Learning (FSL) is proposed in this manuscript for plant disease severity estimation with few training instances. The PDSE-Lite framework is designed and developed in two stages. In first stage, a lightweight CAE model is built and trained to reconstruct leaf images from original leaf images with minimal reconstruction loss. In subsequent stage, pretrained layers of the CAE model built in the first stage are utilized to develop the image classification and segmentation models, which are then trained using FSL. By leveraging FSL, the proposed framework requires only a few annotated instances for training, which significantly reduces the human efforts required for data annotation. Disease severity is then calculated by determining the percentage of diseased leaf pixels obtained through segmentation out of the total leaf pixels. The PDSE-Lite framework's performance is evaluated on Apple-Tree-Leaf-Disease-Segmentation (ATLDS) dataset. However, the proposed framework can identify any plant disease and quantify the severity of identified diseases. Experimental results reveal that the PDSE-Lite framework can accurately detect healthy and four types of apple tree diseases as well as precisely segment the diseased area from leaf images by using only two training samples from each class of the ATLDS dataset. Furthermore, the PDSE-Lite framework's performance is compared with existing state-of-the-art techniques, and it is found that this framework outperformed these approaches. The proposed framework's applicability is further verified by statistical hypothesis testing using Student t-test. The results obtained from this test confirm that the proposed framework can precisely estimate the plant disease severity with a confidence interval of 99%. Hence, by reducing the reliance on large-scale manual data annotation, the proposed framework offers a promising solution for early-stage plant disease diagnosis and severity estimation.
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Affiliation(s)
- Punam Bedi
- Department of Computer Science, University of Delhi, New Delhi, India
| | - Pushkar Gole
- Department of Computer Science, University of Delhi, New Delhi, India
| | - Sudeep Marwaha
- ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
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Saha S, Nandi D. SVM-RLF-DNN: A DNN with reliefF and SVM for automatic identification of COVID from chest X-ray and CT images. Digit Health 2024; 10:20552076241257045. [PMID: 38812845 PMCID: PMC11135098 DOI: 10.1177/20552076241257045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 05/08/2024] [Indexed: 05/31/2024] Open
Abstract
Aim To develop an advanced determination technology for detecting COVID-19 patterns from chest X-ray and CT-scan films with distinct applications of deep learning and machine learning methods. Methods and Materials The newly enhanced proposed hybrid classification network (SVM-RLF-DNN) comprises of three phases: feature extraction, selection and classification. The in-depth features are extracted from a series of 3×3 convolution, 2×2 max polling operations followed by a flattened and fully connected layer of the deep neural network (DNN). ReLU activation function and Adam optimizer are used in the model. The ReliefF is an improved feature selection algorithm of Relief that uses Manhattan distance instead of Euclidean distance. Based on the significance of the feature, the ReliefF assigns weight to each extracted feature received from a fully connected layer. The weight to each feature is the average of k closest hits and misses in each class for a neighbouring instance pair in multiclass problems. The ReliefF eliminates lower-weight features by setting the node value to zero. The higher weights of the features are kept to obtain the feature selection. At the last layer of the neural network, the multiclass Support Vector Machine (SVM) is used to classify the patterns of COVID-19, viral pneumonia and healthy cases. The three classes with three binary SVM classifiers use linear kernel function for each binary SVM following a one-versus-all approach. The hinge loss function and L2-norm regularization are selected for more stable results. The proposed method is assessed on publicly available chest X-ray and CT-scan image databases from Kaggle and GitHub. The performance of the proposed classification model has comparable training, validation, and test accuracy, as well as sensitivity, specificity, and confusion matrix for quantitative evaluation on five-fold cross-validation. Results Our proposed network has achieved test accuracy of 98.48% and 95.34% on 2-class X-rays and CT. More importantly, the proposed model's test accuracy, sensitivity, and specificity are 87.9%, 86.32%, and 90.25% for 3-class classification (COVID-19, Pneumonia, Normal) on chest X-rays. The proposed model provides the test accuracy, sensitivity, and specificity of 95.34%, 94.12%, and 96.15% for 2-class classification (COVID-19, Non-COVID) on chest CT. Conclusion Our proposed classification network experimental results indicate competitiveness with existing neural networks. The proposed neural network assists clinicians in determining and surveilling the disease.
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Affiliation(s)
- Sanjib Saha
- Department of Computer Science and Engineering, National Institute of Technology, Durgapur, India
- Department of Computer Science and Engineering, Dr. B. C. Roy Engineering College, Durgapur, India
| | - Debashis Nandi
- Department of Computer Science and Engineering, National Institute of Technology, Durgapur, India
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Shankari N, Kudva V, Hegde RB. Breast Mass Detection and Classification Using Machine Learning Approaches on Two-Dimensional Mammogram: A Review. Crit Rev Biomed Eng 2024; 52:41-60. [PMID: 38780105 DOI: 10.1615/critrevbiomedeng.2024051166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Abstract
Breast cancer is a leading cause of mortality among women, both in India and globally. The prevalence of breast masses is notably common in women aged 20 to 60. These breast masses are classified, according to the breast imaging-reporting and data systems (BI-RADS) standard, into categories such as fibroadenoma, breast cysts, benign, and malignant masses. To aid in the diagnosis of breast disorders, imaging plays a vital role, with mammography being the most widely used modality for detecting breast abnormalities over the years. However, the process of identifying breast diseases through mammograms can be time-consuming, requiring experienced radiologists to review a significant volume of images. Early detection of breast masses is crucial for effective disease management, ultimately reducing mortality rates. To address this challenge, advancements in image processing techniques, specifically utilizing artificial intelligence (AI) and machine learning (ML), have tiled the way for the development of decision support systems. These systems assist radiologists in the accurate identification and classification of breast disorders. This paper presents a review of various studies where diverse machine learning approaches have been applied to digital mammograms. These approaches aim to identify breast masses and classify them into distinct subclasses such as normal, benign and malignant. Additionally, the paper highlights both the advantages and limitations of existing techniques, offering valuable insights for the benefit of future research endeavors in this critical area of medical imaging and breast health.
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Affiliation(s)
- N Shankari
- NITTE (Deemed to be University), Department of Electronics and Communication Engineering, NMAM Institute of Technology, Nitte 574110, Karnataka, India
| | - Vidya Kudva
- School of Information Sciences, Manipal Academy of Higher Education, Manipal, India -576104; Nitte Mahalinga Adyanthaya Memorial Institute of Technology, Nitte, India - 574110
| | - Roopa B Hegde
- NITTE (Deemed to be University), Department of Electronics and Communication Engineering, NMAM Institute of Technology, Nitte - 574110, Karnataka, India
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Li Z, Pei L, Duan G, Chen S. A non-autonomous time-delayed SIR model for COVID-19 epidemics prediction in China during the transmission of Omicron variant. ELECTRONIC RESEARCH ARCHIVE 2024; 32:2203-2228. [DOI: 10.3934/era.2024100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/03/2024]
Abstract
<abstract><p>With the continuous evolution of the coronavirus, the Omicron variant has gradually replaced the Delta variant as the prevalent strain. Their inducing epidemics last longer, have a higher number of asymptomatic cases, and are more serious. In this article, we proposed a nonautonomous time-delayed susceptible-infected-removed (NATD-SIR) model to predict them in different regions of China. We obtained the maximum and its time of current infected persons, the final size, and the end time of COVID-19 epidemics from January 2022 in China. The method of the fifth-order moving average was used to preprocess the time series of the numbers of current infected and removed cases to obtain more accurate parameter estimations. We found that usually the transmission rate $ \beta(t) $ was a piecewise exponential decay function, but due to multiple bounces in Shanghai City, $ \beta(t) $ was approximately a piecewise quadratic function. In most regions, the removed rate $ \gamma(t) $ was approximately equal to a piecewise linear increasing function of (a*t+b)*H(t-k), but in a few areas, $ \gamma(t) $ displayed an exponential increasing trend. For cases where the removed rate cannot be obtained, we proposed a method for setting the removed rate, which has a good approximation. Using the numerical solution, we obtained the prediction results of the epidemics. By analyzing those important indicators of COVID-19, we provided valuable suggestions for epidemic prevention and control and the resumption of work and production.</p></abstract>
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Affiliation(s)
- Zhiliang Li
- School of Mathematics and Statistics, Zhengzhou University, Henan 450001, China
| | - Lijun Pei
- School of Mathematics and Statistics, Zhengzhou University, Henan 450001, China
| | - Guangcai Duan
- School of Public Health, Zhengzhou University, Henan 450001, China
| | - Shuaiyin Chen
- School of Public Health, Zhengzhou University, Henan 450001, China
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Kaur I, Ahmad T. A cluster-based ensemble approach for congenital heart disease prediction. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 243:107922. [PMID: 37984098 DOI: 10.1016/j.cmpb.2023.107922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2023] [Revised: 10/24/2023] [Accepted: 11/06/2023] [Indexed: 11/22/2023]
Abstract
BACKGROUND One of the most prevalent birth disorders is congenital heart diseases (CHD). Although CHD risk factors have been the subject of numerous studies, their propensity to cause CHD has not been tested. Particularly few research has attempted to forecast CHD risk using population-based cross-sectional data, which is inherently imbalanced. OBJECTIVE The main goals of this study are to create a reliable data analysis model that can help with (i) a better understanding of congenital heart disease prediction in the presence of missing and unbalanced data and (ii) creating cohorts of expectant mothers with similar lifestyle characteristics. METHODS Clusters of patient cohorts are produced using the unsupervised data mining technique density-based spatial clustering of applications with noise (DBSCAN). For more accurate CHD prediction, a random forest model was trained using these clusters and their corresponding patterns. This study uses a dataset of 33,831 expectant mothers to make its prediction. Missing data were handled using the k-NN imputation approach, while extremely unbalanced data were balanced using SMOTE. These techniques are all data-driven and need little to no user or expert involvement. RESULTS AND CONCLUSION Using DBSCAN, three cohorts were found. The cluster information enhanced the random forest-based CHD prediction and revealed intricate factors that influence prediction accuracy. The proposed approach gave the highest results with 99 % accuracy and 0.91 AUC and performed better than the state-of-the-art methodologies. Hence, the suggested method using unsupervised learning can provide intricate information to the classifier and further enhance the performance of the classification.
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Affiliation(s)
- Ishleen Kaur
- Sri Guru Tegh Bahadur Khalsa College, University of Delhi, Delhi, India.
| | - Tanvir Ahmad
- Department of Computer Engineering, Jamia Millia Islamia, New Delhi, India
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Shyamala A, Murugeswari S, Mahendran G, Jothi Chitra R. Hybrid grey assisted whale optimization based machine learning for the COVID-19 prediction. Comput Methods Biomech Biomed Engin 2023:1-10. [PMID: 38112339 DOI: 10.1080/10255842.2023.2292008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Accepted: 12/03/2023] [Indexed: 12/21/2023]
Abstract
Recently, COVID-19 (coronavirus) has been a huge influence on the socio and economic field. COVID-19 cases are seriously increasing day-day and also don't identified proper vaccine for COVID-19. Hence, COVID-19 is fast spreading virus and it causes more deaths. In order to address this, the work has proposed a machine learning (ML) scheme for the prediction of COVID-19 positive, negative, and deceased instances. Initially, the data is pre-processed by eliminating redundant and missing values. Then, the features are selected using hybrid grey assisted whale optimization algorithm (H-GAWOA). Finally, the classifier ANFIS (adaptive network-based fuzzy inference systems) is used for investigating the confirmed, survival and death rate of COVID-19. The performance is analysed on John Hopkins University dataset and the performances like MSE, RMSE, MAPE, and R2 are measured. In all the comparisons, the MSE value is very less for the proposed model. Particularly, in the deceased cases prediction, the MSE value is 0.00 for the proposed H-GAWOA-ANFIS. Finally, it is proved that the suggested model is able to generate the better results when contrast to the other approaches.
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Affiliation(s)
- A Shyamala
- Department of Electronics and Communication Engineering, Mohamed Sathak Engineering College, Kilakarai, Ramanathapuram, Chennai, Tamil Nadu, India
| | - S Murugeswari
- Department of Electronics and Communication Engineering, Syed Ammal Engineering College, Ramanathapuram, Tamil Nadu, India
| | - G Mahendran
- Department of Electronics and Communication Engineering, Syed Ammal Engineering College, Ramanathapuram, Tamil Nadu, India
| | - R Jothi Chitra
- Department of Electronics and Communication Engineering, Velammal Institute of Technology, Thiruvallur, Chennai, Tamil Nadu, India
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Zhou P, Zhang H, Liu L, Pan Y, Liu Y, Sang X, Liu C, Chen Z. Sustainable planning in Wuhan City during COVID-19: an analysis of influential factors, risk profiles, and clustered patterns. Front Public Health 2023; 11:1241029. [PMID: 38152666 PMCID: PMC10751330 DOI: 10.3389/fpubh.2023.1241029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 11/21/2023] [Indexed: 12/29/2023] Open
Abstract
The outbreak of novel coronavirus pneumonia (COVID-19) is closely related to the intra-urban environment. It is important to understand the influence mechanism and risk characteristics of urban environment on infectious diseases from the perspective of urban environment composition. In this study, we used python to collect Sina Weibo help data as well as urban multivariate big data, and The random forest model was used to measure the contribution of each influential factor within to the COVID-19 outbreak. A comprehensive risk evaluation system from the perspective of urban environment was constructed, and the entropy weighting method was used to produce the weights of various types of risks, generate the specific values of the four types of risks, and obtain the four levels of comprehensive risk zones through the K-MEANS clustering of Wuhan's central urban area for zoning planning. Based on the results, we found: ①the five most significant indicators contributing to the risk of the Wuhan COVID-19 outbreak were Road Network Density, Shopping Mall Density, Public Transport Density, Educational Facility Density, Bank Density. Floor Area Ration, Poi Functional Mix ②After streamlining five indicators such as Proportion of Aged Population, Tertiary Hospital Density, Open Space Density, Night-time Light Intensity, Number of Beds Available in Designated Hospitals, the prediction accuracy of the random forest model was the highest. ③The spatial characteristics of the four categories of new crown epidemic risk, namely transmission risk, exposure risk, susceptibility risk and Risk of Scarcity of Medical Resources, were highly differentiated, and a four-level integrated risk zone was obtained by K-MEANS clustering. Its distribution pattern was in the form of "multicenter-periphery" gradient diffusion. For the risk composition of the four-level comprehensive zones combined with the internal characteristics of the urban environment in specific zones to develop differentiated control strategies. Targeted policies were then devised for each partition, offering a practical advantage over singular COVID-19 impact factor analyses. This methodology, beneficial for future public health crises, enables the swift identification of unique risk profiles in different partitions, streamlining the formulation of precise policies. The overarching goal is to maintain regular social development, harmonizing preventive measures and economic efforts.
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Affiliation(s)
| | | | - Lanjun Liu
- School of Civil Engineering and Architecture, Wuhan Institute of Technology, Wuhan, China
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Li Y, Guo J, Qiu H, Chen F, Zhang J. Denoising Diffusion Probabilistic Models and Transfer Learning for citrus disease diagnosis. FRONTIERS IN PLANT SCIENCE 2023; 14:1267810. [PMID: 38146275 PMCID: PMC10749533 DOI: 10.3389/fpls.2023.1267810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Accepted: 11/14/2023] [Indexed: 12/27/2023]
Abstract
Problems Plant Disease diagnosis based on deep learning mechanisms has been extensively studied and applied. However, the complex and dynamic agricultural growth environment results in significant variations in the distribution of state samples, and the lack of sufficient real disease databases weakens the information carried by the samples, posing challenges for accurately training models. Aim This paper aims to test the feasibility and effectiveness of Denoising Diffusion Probabilistic Models (DDPM), Swin Transformer model, and Transfer Learning in diagnosing citrus diseases with a small sample. Methods Two training methods are proposed: The Method 1 employs the DDPM to generate synthetic images for data augmentation. The Swin Transformer model is then used for pre-training on the synthetic dataset produced by DDPM, followed by fine-tuning on the original citrus leaf images for disease classification through transfer learning. The Method 2 utilizes the pre-trained Swin Transformer model on the ImageNet dataset and fine-tunes it on the augmented dataset composed of the original and DDPM synthetic images. Results and conclusion The test results indicate that Method 1 achieved a validation accuracy of 96.3%, while Method 2 achieved a validation accuracy of 99.8%. Both methods effectively addressed the issue of model overfitting when dealing with a small dataset. Additionally, when compared with VGG16, EfficientNet, ShuffleNet, MobileNetV2, and DenseNet121 in citrus disease classification, the experimental results demonstrate the superiority of the proposed methods over existing approaches to a certain extent.
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Affiliation(s)
| | - Jianwen Guo
- School of Mechanical Engineering, Dongguan University of Technology, Dongguan, Guangdong, China
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Liang J, Wu M, Hu Z, Zhao M, Xue Y. Enhancing lead adsorption capacity prediction in biochar: a comparative study of machine learning models and parameter optimization. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:120832-120843. [PMID: 37945960 DOI: 10.1007/s11356-023-30864-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 10/31/2023] [Indexed: 11/12/2023]
Abstract
Machine learning models for predicting lead adsorption in biochar, based on preparation features, are currently lacking in the environmental field. Existing conventional models suffer from accuracy limitations. This study addresses these challenges by developing back-propagation neural network (BPNN) and random forest (RF) models using selected features: preparation temperature (T), specific surface area (BET), relative carbon content (C), molar ratios of hydrogen to carbon (H/C), oxygen to carbon (O/C), nitrogen to carbon (N/C), and cation exchange capacity (CEC). The RF model outperforms BPNN, improving R2 by 10%. Additional features and particle swarm optimization enhance the RF model's accuracy, resulting in an 8.3% improvement in R2, a decrease in RMSE by up to 56.1%, and a 55.7% reduction in MAE. The importance ranking of features places CEC > C > BET > O/C > H/C > N/C > T, highlighting the significance of CEC in lead adsorption. Strengthening the complexation effect may improve lead removal in biochar. This study contributes valuable insights for predicting and optimizing lead adsorption in biochar, addressing the accuracy gap in existing models. It lays the foundation for future investigations and the development of effective biochar-based solutions for sustainable lead removal in water remediation.
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Affiliation(s)
- Jiatong Liang
- School of Civil Engineering, Wuhan University, Wuhan, China
| | - Mingxuan Wu
- School of Civil Engineering, Wuhan University, Wuhan, China
| | - Zhangyi Hu
- School of Civil Engineering, Wuhan University, Wuhan, China
| | - Manyu Zhao
- School of Civil Engineering, Wuhan University, Wuhan, China
| | - Yingwen Xue
- School of Civil Engineering, Wuhan University, Wuhan, China.
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Zhao X, Wang J, Wang J, Wang J, Hong R, Shen T, Liu Y, Liang Y. DTLR-CS: Deep tensor low rank channel cross fusion neural network for reproductive cell segmentation. PLoS One 2023; 18:e0294727. [PMID: 38032913 PMCID: PMC10688749 DOI: 10.1371/journal.pone.0294727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Accepted: 11/07/2023] [Indexed: 12/02/2023] Open
Abstract
In recent years, with the development of deep learning technology, deep neural networks have been widely used in the field of medical image segmentation. U-shaped Network(U-Net) is a segmentation network proposed for medical images based on full-convolution and is gradually becoming the most commonly used segmentation architecture in the medical field. The encoder of U-Net is mainly used to capture the context information in the image, which plays an important role in the performance of the semantic segmentation algorithm. However, it is unstable for U-Net with simple skip connection to perform unstably in global multi-scale modelling, and it is prone to semantic gaps in feature fusion. Inspired by this, in this work, we propose a Deep Tensor Low Rank Channel Cross Fusion Neural Network (DTLR-CS) to replace the simple skip connection in U-Net. To avoid space compression and to solve the high rank problem, we designed a tensor low-ranking module to generate a large number of low-rank tensors containing context features. To reduce semantic differences, we introduced a cross-fusion connection module, which consists of a channel cross-fusion sub-module and a feature connection sub-module. Based on the proposed network, experiments have shown that our network has accurate cell segmentation performance.
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Affiliation(s)
- Xia Zhao
- Reproductive Medicine Center, Zhongda Hospital, Southeast University, Nanjing, Jiangsu Province, China
| | - Jiahui Wang
- School of Medicine, Southeast University, Nanjing, Jiangsu Province, China
| | - Jing Wang
- Reproductive Medicine Center, Zhongda Hospital, Southeast University, Nanjing, Jiangsu Province, China
| | - Jing Wang
- Reproductive Medicine Center, Zhongda Hospital, Southeast University, Nanjing, Jiangsu Province, China
| | - Renyun Hong
- Reproductive Medicine Center, Zhongda Hospital, Southeast University, Nanjing, Jiangsu Province, China
| | - Tao Shen
- Reproductive Medicine Center, Zhongda Hospital, Southeast University, Nanjing, Jiangsu Province, China
| | - Yi Liu
- School of Medicine, Southeast University, Nanjing, Jiangsu Province, China
| | - Yuanjiao Liang
- Reproductive Medicine Center, Zhongda Hospital, Southeast University, Nanjing, Jiangsu Province, China
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Jyothi P, Dhanasekaran S. An attention 3DUNET and visual geometry group-19 based deep neural network for brain tumor segmentation and classification from MRI. J Biomol Struct Dyn 2023:1-12. [PMID: 37979152 DOI: 10.1080/07391102.2023.2283164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 11/06/2023] [Indexed: 11/20/2023]
Abstract
There has been an abrupt increase in brain tumor (BT) related medical cases during the past ten years. The tenth most typical type of tumor affecting millions of people is the BT. The cure rate can, however, rise if it is found early. When evaluating BT diagnosis and treatment options, MRI is a crucial tool. However, segmenting the tumors from magnetic resonance (MR) images is complex. The advancement of deep learning (DL) has led to the development of numerous automatic segmentation and classification approaches. However, most need improvement since they are limited to 2D images. So, this article proposes a novel and optimal DL system for segmenting and classifying the BTs from 3D brain MR images. Preprocessing, segmentation, feature extraction, feature selection, and tumor classification are the main phases of the proposed work. Preprocessing, such as noise removal, is performed on the collected brain MR images using bilateral filtering. The tumor segmentation uses spatial and channel attention-based three-dimensional u-shaped network (SC3DUNet) to segment the tumor lesions from the preprocessed data. After that, the feature extraction is done based on dilated convolution-based visual geometry group-19 (DCVGG-19), making the classification task more manageable. The optimal features are selected from the extracted feature sets using diagonal linear uniform and tangent flight included butterfly optimization algorithm. Finally, the proposed system applies an optimal hyperparameters-based deep neural network to classify the tumor classes. The experiments conducted on the BraTS2020 dataset show that the suggested method can segment tumors and categorize them more accurately than the existing state-of-the-art mechanisms.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Parvathy Jyothi
- Department of Computer Science and Engineering, Kalasalingam Academy of Research and Education, Krishnankoil, India
| | - S Dhanasekaran
- Department of Information Technology, Kalasalingam Academy of Research and Education, Krishnankoil, India
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Oyageshio OP, Myrick JW, Saayman J, van der Westhuizen L, Al-Hindi D, Reynolds AW, Zaitlen N, Uren C, Möller M, Henn BM. Strong Effect of Demographic Changes on Tuberculosis Susceptibility in South Africa. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2023:2023.11.02.23297990. [PMID: 37961495 PMCID: PMC10635255 DOI: 10.1101/2023.11.02.23297990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
South Africa is among the world's top eight TB burden countries, and despite a focus on HIV-TB co-infection, most of the population living with TB are not HIV co-infected. The disease is endemic across the country with 80-90% exposure by adulthood. We investigated epidemiological risk factors for tuberculosis (TB) in the Northern Cape Province, South Africa: an understudied TB endemic region with extreme TB incidence (645/100,000) and the lowest provincial population density. We leveraged the population's high TB incidence and community transmission to design a case-control study with population-based controls, reflecting similar mechanisms of exposure between the groups. We recruited 1,126 participants with suspected TB from 12 community health clinics, and generated a cohort of 878 individuals (cases =374, controls =504) after implementing our enrollment criteria. All participants were GeneXpert Ultra tested for active TB by a local clinic. We assessed important risk factors for active TB using logistic regression and random forest modeling. Additionally, a subset of individuals were genotyped to determine genome-wide ancestry components. Male gender had the strongest effect on TB risk (OR: 2.87 [95% CI: 2.1-3.8]); smoking and alcohol consumption did not significantly increase TB risk. We identified two interactions: age by socioeconomic status (SES) and birthplace by residence locality on TB risk (OR = 3.05, p = 0.016) - where rural birthplace but town residence was the highest risk category. Finally, participants had a majority Khoe-San ancestry, typically greater than 50%. Epidemiological risk factors for this cohort differ from other global populations. The significant interaction effects reflect rapid changes in SES and mobility over recent generations and strongly impact TB risk in the Northern Cape of South Africa. Our models show that such risk factors combined explain 16% of the variance (r2) in case/control status.
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Affiliation(s)
- Oshiomah P. Oyageshio
- Center for Population Biology, University of California, Davis, Davis, CA 95616, USA
| | - Justin W. Myrick
- UC Davis Genome Center, University of California, Davis, Davis, CA 95616, USA
| | - Jamie Saayman
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research; South African Medical Research Council Centre for Tuberculosis Research; Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
| | - Lena van der Westhuizen
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research; South African Medical Research Council Centre for Tuberculosis Research; Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
| | - Dana Al-Hindi
- Department of Anthropology, University of California, Davis, Davis, CA 95616, USA
| | | | - Noah Zaitlen
- Department of Computational Medicine, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, 90095, USA
| | - Caitlin Uren
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research; South African Medical Research Council Centre for Tuberculosis Research; Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
- Centre for Bioinformatics and Computational Biology, Stellenbosch University, Stellenbosch, South Africa
| | - Marlo Möller
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research; South African Medical Research Council Centre for Tuberculosis Research; Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
- Centre for Bioinformatics and Computational Biology, Stellenbosch University, Stellenbosch, South Africa
| | - Brenna M. Henn
- Center for Population Biology, University of California, Davis, Davis, CA 95616, USA
- UC Davis Genome Center, University of California, Davis, Davis, CA 95616, USA
- Department of Anthropology, University of California, Davis, Davis, CA 95616, USA
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Li J, Jia K, Zhao W, Yuan B, Liu Y. Natural and socio-environmental factors contribute to the transmissibility of COVID-19: evidence from an improved SEIR model. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2023; 67:1789-1802. [PMID: 37561207 DOI: 10.1007/s00484-023-02539-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 06/28/2023] [Accepted: 08/01/2023] [Indexed: 08/11/2023]
Abstract
COVID-19 has ravaged Brazil, and its spread showed spatial heterogeneity. Changes in the environment have been implicated as potential factors involved in COVID-19 transmission. However, considerable research efforts have not elucidated the risk of environmental factors on COVID-19 transmission from the perspective of infectious disease dynamics. The aim of this study is to model the influence of the environment on COVID-19 transmission and to analyze how the socio-ecological factors affecting the probability of virus transmission in 10 states dramatically shifted during the early stages of the epidemic in Brazil. First, this study used a Pearson correlation to analyze the interconnection between COVID-19 morbidity and socio-ecological factors and identified factors with significant correlations as the dominant factors affecting COVID-19 transmission. Then, the time-lag effect of dominant factors on the morbidity of COVID-19 was investigated by constructing a distributed lag nonlinear model and standard two-stage meta-analytic model, and the results were considered in the improved SEIR model. Lastly, a machine learning method was introduced to explore the nonlinear relationship between the environmental propagation probability and socio-ecological factors. By analyzing the impact of environmental factors on virus transmission, it can be found that population mobility directly caused by human activities had a greater impact on virus transmission than temperature and humidity. The heterogeneity of meteorological factors can be accounted for by the diverse climate patterns in Brazil. The improved SEIR model was adopted to explore the interconnection of COVID-19 transmission and the environment, which revealed a new strategy to probe the causal links between them.
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Affiliation(s)
- Jie Li
- State Key Laboratory of Remote Sensing Science, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Kun Jia
- State Key Laboratory of Remote Sensing Science, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China.
| | - Wenwu Zhao
- Stake Key Laboratory of Earth Surface Processes and Resource Ecology, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
- Institute of Land Surface System and Sustainable Development, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Bo Yuan
- State Key Laboratory of Remote Sensing Science, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
| | - Yanxu Liu
- Stake Key Laboratory of Earth Surface Processes and Resource Ecology, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
- Institute of Land Surface System and Sustainable Development, Faculty of Geographical Science, Beijing Normal University, Beijing, 100875, China
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Chai G, Li S, Yang Y, Zhou G, Wang Y. CTSF: An Intrusion Detection Framework for Industrial Internet Based on Enhanced Feature Extraction and Decision Optimization Approach. SENSORS (BASEL, SWITZERLAND) 2023; 23:8793. [PMID: 37960495 PMCID: PMC10647644 DOI: 10.3390/s23218793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 10/20/2023] [Accepted: 10/27/2023] [Indexed: 11/15/2023]
Abstract
The traditional Transformer model primarily employs a self-attention mechanism to capture global feature relationships, potentially overlooking local relationships within sequences and thus affecting the modeling capability of local features. For Support Vector Machine (SVM), it often requires the joint use of feature selection algorithms or model optimization methods to achieve maximum classification accuracy. Addressing the issues in both models, this paper introduces a novel network framework, CTSF, specifically designed for Industrial Internet intrusion detection. CTSF effectively addresses the limitations of traditional Transformers in extracting local features while compensating for the weaknesses of SVM. The framework comprises a pre-training component and a decision-making component. The pre-training section consists of both CNN and an enhanced Transformer, designed to capture both local and global features from input data while reducing data feature dimensions. The improved Transformer simultaneously decreases certain training parameters within CTSF, making it more suitable for the Industrial Internet environment. The classification section is composed of SVM, which receives initial classification data from the pre-training phase and determines the optimal decision boundary. The proposed framework is evaluated on an imbalanced subset of the X-IIOTID dataset, which represent Industrial Internet data. Experimental results demonstrate that with SVM using both "linear" and "rbf" kernel functions, CTSF achieves an overall accuracy of 0.98875 and effectively discriminates minor classes, showcasing the superiority of this framework.
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Affiliation(s)
| | - Shiming Li
- College of Computer Science and Information Engineering, Harbin Normal University, Harbin 150025, China; (G.C.); (Y.Y.); (G.Z.)
| | | | | | - Yuhe Wang
- College of Computer Science and Information Engineering, Harbin Normal University, Harbin 150025, China; (G.C.); (Y.Y.); (G.Z.)
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Healthcare Engineering JO. Retracted: A Real-Time Crowd Monitoring and Management System for Social Distance Classification and Healthcare Using Deep Learning. JOURNAL OF HEALTHCARE ENGINEERING 2023; 2023:9832757. [PMID: 37829371 PMCID: PMC10567156 DOI: 10.1155/2023/9832757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Accepted: 10/03/2023] [Indexed: 10/14/2023]
Abstract
[This retracts the article DOI: 10.1155/2022/2130172.].
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Patel M, Surti M, Adnan M. Artificial intelligence (AI) in Monkeypox infection prevention. J Biomol Struct Dyn 2023; 41:8629-8633. [PMID: 36218112 PMCID: PMC9627635 DOI: 10.1080/07391102.2022.2134214] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Accepted: 10/03/2022] [Indexed: 11/08/2022]
Abstract
Monkeypox is a possible public health concern that requires appropriate attention in order to prevent the spread of the disease. Currently, artificial intelligence (AI) is making a significant impact on precision medicine, reshaping and integrating the large amount of data derived from multiomics analyses and revolutionizing the deep-learning strategies. There has been a significant progress in the use of AI to detect, screen, diagnose, and classify diseases, characterize virus genomes, assess biomarkers for prognostic and predictive purposes, and develop follow-up strategies. Hence, it is possible to use AI for the identification of disease clusters, cases monitoring, forecasting the future outbreak, determining mortality risk, diagnosing, managing, and identifying patterns for studying disease trends. AI may also be utilized to assist gene therapy and other therapies that we are not currently able to use in healthcare. It is possible to combine pharmacology and gene therapy with regenerative medicine with the help of AI. It will directly benefit the public in overcoming fear and panic of health risks. Therefore, AI can be an effective weapon to fight against Monkeypox infection, and may prove to be an invaluable future tool in improving the clinical management of patients. Key Points: Emergence and spread of the Monkeypox virus is a new public health crisis; threatening the world. This opinion piece highlights the urgently required information for immediate delivery of solutions on controlling and monitoring the spread of Monkeypox infection through Artificial IntelligenceCommunicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Mitesh Patel
- Department of Biotechnology, Parul Institute of Applied Sciences and Centre of Research for Development, Parul University, Vadodara, Gujarat, India
| | - Malvi Surti
- Bapalal Vaidya Botanical Research Centre, Department of Biosciences, Veer Narmad South Gujarat University, Surat, Gujarat, India
| | - Mohd Adnan
- Department of Biology, College of Science, University of Hail, Hail, Saudi Arabia
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Chatterjee A, Prinz A, Riegler MA, Das J. A systematic review and knowledge mapping on ICT-based remote and automatic COVID-19 patient monitoring and care. BMC Health Serv Res 2023; 23:1047. [PMID: 37777722 PMCID: PMC10543863 DOI: 10.1186/s12913-023-10047-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2023] [Accepted: 09/20/2023] [Indexed: 10/02/2023] Open
Abstract
BACKGROUND e-Health has played a crucial role during the COVID-19 pandemic in primary health care. e-Health is the cost-effective and secure use of Information and Communication Technologies (ICTs) to support health and health-related fields. Various stakeholders worldwide use ICTs, including individuals, non-profit organizations, health practitioners, and governments. As a result of the COVID-19 pandemic, ICT has improved the quality of healthcare, the exchange of information, training of healthcare professionals and patients, and facilitated the relationship between patients and healthcare providers. This study systematically reviews the literature on ICT-based automatic and remote monitoring methods, as well as different ICT techniques used in the care of COVID-19-infected patients. OBJECTIVE The purpose of this systematic literature review is to identify the e-Health methods, associated ICTs, method implementation strategies, information collection techniques, advantages, and disadvantages of remote and automatic patient monitoring and care in COVID-19 pandemic. METHODS The search included primary studies that were published between January 2020 and June 2022 in scientific and electronic databases, such as EBSCOhost, Scopus, ACM, Nature, SpringerLink, IEEE Xplore, MEDLINE, Google Scholar, JMIR, Web of Science, Science Direct, and PubMed. In this review, the findings from the included publications are presented and elaborated according to the identified research questions. Evidence-based systematic reviews and meta-analyses were conducted using the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) framework. Additionally, we improved the review process using the Rayyan tool and the Scale for the Assessment of Narrative Review Articles (SANRA). Among the eligibility criteria were methodological rigor, conceptual clarity, and useful implementation of ICTs in e-Health for remote and automatic monitoring of COVID-19 patients. RESULTS Our initial search identified 664 potential studies; 102 were assessed for eligibility in the pre-final stage and 65 articles were used in the final review with the inclusion and exclusion criteria. The review identified the following eHealth methods-Telemedicine, Mobile Health (mHealth), and Telehealth. The associated ICTs are Wearable Body Sensors, Artificial Intelligence (AI) algorithms, Internet-of-Things, or Internet-of-Medical-Things (IoT or IoMT), Biometric Monitoring Technologies (BioMeTs), and Bluetooth-enabled (BLE) home health monitoring devices. Spatial or positional data, personal and individual health, and wellness data, including vital signs, symptoms, biomedical images and signals, and lifestyle data are examples of information that is managed by ICTs. Different AI and IoT methods have opened new possibilities for automatic and remote patient monitoring with associated advantages and weaknesses. Our findings were represented in a structured manner using a semantic knowledge graph (e.g., ontology model). CONCLUSIONS Various e-Health methods, related remote monitoring technologies, different approaches, information categories, the adoption of ICT tools for an automatic remote patient monitoring (RPM), advantages and limitations of RMTs in the COVID-19 case are discussed in this review. The use of e-Health during the COVID-19 pandemic illustrates the constraints and possibilities of using ICTs. ICTs are not merely an external tool to achieve definite remote and automatic health monitoring goals; instead, they are embedded in contexts. Therefore, the importance of the mutual design process between ICT and society during the global health crisis has been observed from a social informatics perspective. A global health crisis can be observed as an information crisis (e.g., insufficient information, unreliable information, and inaccessible information); however, this review shows the influence of ICTs on COVID-19 patients' health monitoring and related information collection techniques.
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Affiliation(s)
- Ayan Chatterjee
- Department of Information and Communication Technology, Centre for e-Health, University of Agder, Grimstad, Norway.
- Department of Holistic Systems, Simula Metropolitan Center for Digital Engineering, Oslo, Norway.
| | - Andreas Prinz
- Department of Information and Communication Technology, Centre for e-Health, University of Agder, Grimstad, Norway
| | - Michael A Riegler
- Department of Holistic Systems, Simula Metropolitan Center for Digital Engineering, Oslo, Norway
| | - Jishnu Das
- Department of Information Systems, Centre for e-Health, University of Agder, Kristiansand, Norway
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Narasimhan G, Victor A. Analysis of computational intelligence approaches for predicting disease severity in humans: Challenges and research guidelines. JOURNAL OF EDUCATION AND HEALTH PROMOTION 2023; 12:334. [PMID: 38023081 PMCID: PMC10671019 DOI: 10.4103/jehp.jehp_298_23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 04/12/2023] [Indexed: 12/01/2023]
Abstract
The word disease is a common word and there are many diseases like heart disease, diabetes, breast cancer, COVID-19, and kidney disease that threaten humans. Data-mining methods are proving to be increasingly beneficial in the present day, especially in the field of medical applications; through the use of machine-learning methods, that are used to extract valuable information from healthcare data, which can then be used to predict and treat diseases early, reducing the risk of human life. Machine-learning techniques are useful especially in the field of health care in extracting information from healthcare data. These data are very much helpful in predicting the disease early and treating the patients to reduce the risk of human life. For classification and decision-making, data mining is very much suitable. In this paper, a comprehensive study on several diseases and diverse machine-learning approaches that are functional to predict those diseases and also the different datasets used in prediction and making decisions are discussed in detail. The drawbacks of the models from various research papers have been observed and reveal countless computational intelligence approaches. Naïve Bayes, logistic regression (LR), SVM, and random forest are able to produce the best accuracy. With further optimization algorithms like genetic algorithm, particle swarm optimization, and ant colony optimization combined with machine learning, better performance can be achieved in terms of accuracy, specificity, precision, recall, and specificity.
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Affiliation(s)
- Geetha Narasimhan
- School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, Tamil Nadu, India
| | - Akila Victor
- School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, Tamil Nadu, India
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