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Costa P, Pereira C, Romalde JL, Almeida A. A game of resistance: War between bacteria and phages and how phage cocktails can be the solution. Virology 2024; 599:110209. [PMID: 39186863 DOI: 10.1016/j.virol.2024.110209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 08/12/2024] [Accepted: 08/14/2024] [Indexed: 08/28/2024]
Abstract
While phages hold promise as an antibiotic alternative, they encounter significant challenges in combating bacterial infections, primarily due to the emergence of phage-resistant bacteria. Bacterial defence mechanisms like superinfection exclusion, CRISPR, and restriction-modification systems can hinder phage effectiveness. Innovative strategies, such as combining different phages into cocktails, have been explored to address these challenges. This review delves into these defence mechanisms and their impact at each stage of the infection cycle, their challenges, and the strategies phages have developed to counteract them. Additionally, we examine the role of phage cocktails in the evolving landscape of antibacterial treatments and discuss recent studies that highlight the effectiveness of diverse phage cocktails in targeting essential bacterial receptors and combating resistant strains.
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Affiliation(s)
- Pedro Costa
- CESAM, Department of Biology, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.
| | - Carla Pereira
- CESAM, Department of Biology, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.
| | - Jesús L Romalde
- Department of Microbiology and Parasitology, CRETUS & CIBUS - Faculty of Biology, University of Santiago de Compostela, CP 15782 Santiago de Compostela, Spain.
| | - Adelaide Almeida
- CESAM, Department of Biology, University of Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal.
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2
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Peters DL, Gaudreault F, Chen W. Functional domains of Acinetobacter bacteriophage tail fibers. Front Microbiol 2024; 15:1230997. [PMID: 38690360 PMCID: PMC11058221 DOI: 10.3389/fmicb.2024.1230997] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 03/08/2024] [Indexed: 05/02/2024] Open
Abstract
A rapid increase in antimicrobial resistant bacterial infections around the world is causing a global health crisis. The Gram-negative bacterium Acinetobacter baumannii is categorized as a Priority 1 pathogen for research and development of new antimicrobials by the World Health Organization due to its numerous intrinsic antibiotic resistance mechanisms and ability to quickly acquire new resistance determinants. Specialized phage enzymes, called depolymerases, degrade the bacterial capsule polysaccharide layer and show therapeutic potential by sensitizing the bacterium to phages, select antibiotics, and serum killing. The functional domains responsible for the capsule degradation activity are often found in the tail fibers of select A. baumannii phages. To further explore the functional domains associated with depolymerase activity, tail-associated proteins of 71 sequenced and fully characterized phages were identified from published literature and analyzed for functional domains using InterProScan. Multisequence alignments and phylogenetic analyses were conducted on the domain groups and assessed in the context of noted halo formation or depolymerase characterization. Proteins derived from phages noted to have halo formation or a functional depolymerase, but no functional domain hits, were modeled with AlphaFold2 Multimer, and compared to other protein models using the DALI server. The domains associated with depolymerase function were pectin lyase-like (SSF51126), tailspike binding (cd20481), (Trans)glycosidases (SSF51445), and potentially SGNH hydrolases. These findings expand our knowledge on phage depolymerases, enabling researchers to better exploit these enzymes for therapeutic use in combating the antimicrobial resistance crisis.
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Affiliation(s)
- Danielle L. Peters
- Human Health Therapeutics (HHT) Research Center, National Research Council Canada, Ottawa, ON, Canada
| | | | - Wangxue Chen
- Human Health Therapeutics (HHT) Research Center, National Research Council Canada, Ottawa, ON, Canada
- Department of Biology, Brock University, St. Catharines, ON, Canada
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3
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Berezina OV, Rykov SV, Schwarz WH, Liebl W. Xanthan: enzymatic degradation and novel perspectives of applications. Appl Microbiol Biotechnol 2024; 108:227. [PMID: 38381223 PMCID: PMC10881899 DOI: 10.1007/s00253-024-13016-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 01/04/2024] [Accepted: 01/11/2024] [Indexed: 02/22/2024]
Abstract
The extracellular heteropolysaccharide xanthan, synthesized by bacteria of the genus Xanthomonas, is widely used as a thickening and stabilizing agent across the food, cosmetic, and pharmaceutical sectors. Expanding the scope of its application, current efforts target the use of xanthan to develop innovative functional materials and products, such as edible films, eco-friendly oil surfactants, and biocompatible composites for tissue engineering. Xanthan-derived oligosaccharides are useful as nutritional supplements and plant defense elicitors. Development and processing of such new functional materials and products often necessitate tuning of xanthan properties through targeted structural modification. This task can be effectively carried out with the help of xanthan-specific enzymes. However, the complex molecular structure and intricate conformational behavior of xanthan create problems with its enzymatic hydrolysis or modification. This review summarizes and analyzes data concerning xanthan-degrading enzymes originating from microorganisms and microbial consortia, with a particular focus on the dependence of enzymatic activity on the structure and conformation of xanthan. Through a comparative study of xanthan-degrading pathways found within various bacterial classes, different microbial enzyme systems for xanthan utilization have been identified. The characterization of these new enzymes opens new perspectives for modifying xanthan structure and developing innovative xanthan-based applications. KEY POINTS: • The structure and conformation of xanthan affect enzymatic degradation. • Microorganisms use diverse multienzyme systems for xanthan degradation. • Xanthan-specific enzymes can be used to develop xanthan variants for novel applications.
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Affiliation(s)
- Oksana V Berezina
- National Research Centre «Kurchatov Institute», Academician Kurchatov Sq. 1, 123182, Moscow, Russian Federation
| | - Sergey V Rykov
- National Research Centre «Kurchatov Institute», Academician Kurchatov Sq. 1, 123182, Moscow, Russian Federation
| | - Wolfgang H Schwarz
- Chair of Microbiology, Technical University of Munich, TUM School of Life Sciences, Emil-Ramann-Str. 4, 85354, Freising, Germany
| | - Wolfgang Liebl
- Chair of Microbiology, Technical University of Munich, TUM School of Life Sciences, Emil-Ramann-Str. 4, 85354, Freising, Germany.
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4
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Li P, Yin R, Cheng J, Lin J. Bacterial Biofilm Formation on Biomaterials and Approaches to Its Treatment and Prevention. Int J Mol Sci 2023; 24:11680. [PMID: 37511440 PMCID: PMC10380251 DOI: 10.3390/ijms241411680] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 07/13/2023] [Accepted: 07/17/2023] [Indexed: 07/30/2023] Open
Abstract
Bacterial biofilms can cause widespread infection. In addition to causing urinary tract infections and pulmonary infections in patients with cystic fibrosis, biofilms can help microorganisms adhere to the surfaces of various medical devices, causing biofilm-associated infections on the surfaces of biomaterials such as venous ducts, joint prostheses, mechanical heart valves, and catheters. Biofilms provide a protective barrier for bacteria and provide resistance to antimicrobial agents, which increases the morbidity and mortality of patients. This review summarizes biofilm formation processes and resistance mechanisms, as well as the main features of clinically persistent infections caused by biofilms. Considering the various infections caused by clinical medical devices, we introduce two main methods to prevent and treat biomaterial-related biofilm infection: antibacterial coatings and the surface modification of biomaterials. Antibacterial coatings depend on the covalent immobilization of antimicrobial agents on the coating surface and drug release to prevent and combat infection, while the surface modification of biomaterials affects the adhesion behavior of cells on the surfaces of implants and the subsequent biofilm formation process by altering the physical and chemical properties of the implant material surface. The advantages of each strategy in terms of their antibacterial effect, biocompatibility, limitations, and application prospects are analyzed, providing ideas and research directions for the development of novel biofilm infection strategies related to therapeutic materials.
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Affiliation(s)
| | | | | | - Jinshui Lin
- Shaanxi Key Laboratory of Chinese Jujube, College of Life Sciences, Yan’an University, Yan’an 716000, China; (P.L.); (R.Y.); (J.C.)
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5
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Development and Evaluation of Bacteriophage Cocktail to Eradicate Biofilms Formed by an Extensively Drug-Resistant (XDR) Pseudomonas aeruginosa. Viruses 2023; 15:v15020427. [PMID: 36851640 PMCID: PMC9965693 DOI: 10.3390/v15020427] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/22/2023] [Accepted: 01/31/2023] [Indexed: 02/05/2023] Open
Abstract
Extensive and multiple drug resistance in P. aeruginosa combined with the formation of biofilms is responsible for its high persistence in nosocomial infections. A sequential method to devise a suitable phage cocktail with a broad host range and high lytic efficiency against a biofilm forming XDR P. aeruginosa strain is presented here. Out of a total thirteen phages isolated against P. aeruginosa, five were selected on the basis of their high lytic spectra assessed using spot assay and productivity by efficiency of plating assay. Phages, after selection, were tested individually and in combinations of two-, three-, four-, and five-phage cocktails using liquid infection model. Out of total 22 combinations tested, the cocktail comprising four phages viz. φPA170, φPA172, φPA177, and φPA180 significantly inhibited the bacterial growth in liquid infection model (p < 0.0001). The minimal inhibitory dose of each phage in a cocktail was effectively reduced to >10 times than the individual dose in the inhibition of XDR P. aeruginosa host. Field emission-scanning electron microscopy was used to visualize phage cocktail mediated eradication of 4-day-old multi-layers of XDR P. aeruginosa biofilms from urinary catheters and glass cover slips, and was confirmed by absence of any viable cells. Differential bacterial inhibition was observed with different phage combinations where multiple phages were found to enhance the cocktail's lytic range, but the addition of too many phages reduced the overall inhibition. This study elaborates an effective and sequential method for the preparation of a phage cocktail and evaluates its antimicrobial potential against biofilm forming XDR strains of P. aeruginosa.
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6
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Dantas R, Brocchi M, Pacheco Fill T. Chemical-Biology and Metabolomics Studies in Phage-Host Interactions. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2023; 1439:71-100. [PMID: 37843806 DOI: 10.1007/978-3-031-41741-2_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2023]
Abstract
For many years, several studies have explored the molecular mechanisms involved in the infection of bacteria by their specific phages to understand the main infection strategies and the host defense strategies. The modulation of the mechanisms involved in the infection, as well as the expression of key substances in the development of the different life cycles of phages, function as a natural source of strategies capable of promoting the control of different pathogens that are harmful to human and animal health. Therefore, this chapter aims to provide an overview of the mechanisms involved in virus-bacteria interaction to explore the main compounds produced or altered as a chemical survival strategy and the metabolism modulation when occurring a host-phage interaction. In this context, emphasis will be given to the chemistry of peptides/proteins and enzymes encoded by bacteriophages in the control of pathogenic bacteria and the use of secondary metabolites recently reported as active participants in the mechanisms of phage-bacteria interaction. Finally, metabolomics strategies developed to gain new insights into the metabolism involved in the phage-host interaction and the metabolomics workflow in host-phage interaction will be presented.
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Affiliation(s)
- Rodolfo Dantas
- Institute of Chemistry, University of Campinas, Campinas, São Paulo, Brazil
| | - Marcelo Brocchi
- Institute of Biology, University of Campinas, Campinas, São Paulo, Brazil
| | - Taícia Pacheco Fill
- Institute of Chemistry, University of Campinas, Campinas, São Paulo, Brazil.
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7
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Hijacking host components for bacterial biofilm formation: An advanced mechanism. Int Immunopharmacol 2021; 103:108471. [PMID: 34952466 DOI: 10.1016/j.intimp.2021.108471] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Revised: 12/13/2021] [Accepted: 12/14/2021] [Indexed: 12/12/2022]
Abstract
Biofilm is a community of bacteria embedded in the extracellular matrix that accounts for 80% of bacterial infections. Biofilm enables bacterial cells to provide particular conditions and produce virulence determinants in response to the unavailability of micronutrients and local oxygen, resulting in their resistance to various antibacterial agents. Besides, the human immune reactions are not completely competent in the elimination of biofilm. Most importantly, the growing body of evidence shows that some bacterial spp. use a variety of mechanisms by which hijack the host components to form biofilm. In this regard, host components, such as DNA, hyaluronan, collagen, fibronectin, mucin, oligosaccharide moieties, filamentous polymers (F-actin), plasma, platelets, keratin, sialic acid, laminin, vitronectin, C3- and C4- binding proteins, antibody, proteases, factor I, factor H, and acidic proline-rich proteins have been reviewed. Hence, the characterization of interactions between bacterial biofilm and the host would be critical to effectively address biofilm-associated infections. In this paper, we review the latest information on the hijacking of host factors by bacteria to form biofilm.
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8
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Pannekens M, Voskuhl L, Mohammadian S, Köster D, Meier A, Köhne JM, Kulbatzki M, Akbari A, Haque S, Meckenstock RU. Microbial Degradation Rates of Natural Bitumen. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:8700-8708. [PMID: 34169718 PMCID: PMC8264945 DOI: 10.1021/acs.est.1c00596] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 06/10/2021] [Accepted: 06/15/2021] [Indexed: 06/13/2023]
Abstract
Microorganisms are present in nearly every oil or bitumen sample originating from temperate reservoirs. Nevertheless, it is very difficult to obtain reliable estimates about microbial processes taking place in deep reservoirs, since metabolic rates are rather low and differ strongly during artificially cultivation. Here, we demonstrate the importance and impact of microorganisms entrapped in microscale water droplets for the overall biodegradation process in bitumen. To this end, we measured degradation rates of heavily biodegraded bitumen from the Pitch Lake (Trinidad and Tobago) using the novel technique of reverse stable isotope labeling, allowing precise measurements of comparatively low mineralization rates in the ng range in microcosms under close to natural conditions. Freshly taken bitumen samples were overlain with artificial brackish water and incubated for 945 days. Additionally, three-dimensional distribution of water droplets in bitumen was studied with computed tomography, revealing a water bitumen interface of 1134 cm2 per liter bitumen, resulting in an average mineralization rate of 9.4-38.6 mmol CO2 per liter bitumen and year. Furthermore, a stable and biofilm-forming microbial community established on the bitumen itself, mainly composed of fermenting and sulfate-reducing bacteria. Our results suggest that small water inclusions inside the bitumen substantially increase the bitumen-water interface and might have a major impact on the overall oil degradation process.
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Affiliation(s)
- Mark Pannekens
- Environmental
Microbiology and Biotechnology, Aquatic Microbiology, University of Duisburg—Essen, 45141 Essen, Germany
| | - Lisa Voskuhl
- Environmental
Microbiology and Biotechnology, Aquatic Microbiology, University of Duisburg—Essen, 45141 Essen, Germany
| | - Sadjad Mohammadian
- Environmental
Microbiology and Biotechnology, Aquatic Microbiology, University of Duisburg—Essen, 45141 Essen, Germany
| | - Daniel Köster
- Instrumental
Analytical Chemistry, University of Duisburg—Essen, 45141 Essen, Germany
| | - Arne Meier
- Environmental
Microbiology and Biotechnology, Aquatic Microbiology, University of Duisburg—Essen, 45141 Essen, Germany
| | - John M. Köhne
- Department
of Soil System Science, Helmholtz Centre
for Environmental Research, 06120 Halle, Germany
| | - Michelle Kulbatzki
- Environmental
Microbiology and Biotechnology, Aquatic Microbiology, University of Duisburg—Essen, 45141 Essen, Germany
| | - Ali Akbari
- Environmental
Microbiology and Biotechnology, Aquatic Microbiology, University of Duisburg—Essen, 45141 Essen, Germany
| | - Shirin Haque
- Department
of Physics, Faculty of Science and Technology, The University of The West Indies, St. Augustine, Trinidad and Tobago
| | - Rainer U. Meckenstock
- Environmental
Microbiology and Biotechnology, Aquatic Microbiology, University of Duisburg—Essen, 45141 Essen, Germany
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9
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Figueiredo CM, Malvezzi Karwowski MS, da Silva Ramos RCP, de Oliveira NS, Peña LC, Carneiro E, Freitas de Macedo RE, Rosa EAR. Bacteriophages as tools for biofilm biocontrol in different fields. BIOFOULING 2021; 37:689-709. [PMID: 34304662 DOI: 10.1080/08927014.2021.1955866] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Revised: 07/07/2021] [Accepted: 07/10/2021] [Indexed: 06/13/2023]
Abstract
Microbial biofilms are difficult to control due to the limited accessibility that antimicrobial drugs and chemicals have to the entrapped inner cells. The extracellular matrix, binds water, contributes to altered cell physiology within biofilms and act as a barrier for most antiproliferative molecules. Thus, new strategies need to be developed to overcome biofilm vitality. In this review, based on 223 documents, the advantages, recommendations, and limitations of using bacteriophages as 'biofilm predators' are presented. The plausibility of using phages (bacteriophages and mycoviruses) to control biofilms grown in different environments is also discussed. The topics covered here include recent historical experiences in biofilm control/eradication using phages in medicine, dentistry, veterinary, and food industries, the pros and cons of their use, and the development of microbial resistance/immunity to such viruses.
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Affiliation(s)
| | | | | | | | - Lorena Caroline Peña
- Xenobiotics Research Unit, Pontifícia Universidade Católica do Paraná, Curitiba, Brazil
| | - Everdan Carneiro
- Graduate Program in Dentistry, Pontifícia Universidade Católica do Paraná, Curitiba, Brazil
| | | | - Edvaldo Antonio Ribeiro Rosa
- Graduate Program in Dentistry, Pontifícia Universidade Católica do Paraná, Curitiba, Brazil
- Graduate Program in Animal Sciences, Pontifícia Universidade Católica do Paraná, Curitiba, Brazil
- Xenobiotics Research Unit, Pontifícia Universidade Católica do Paraná, Curitiba, Brazil
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10
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Pathak P, Kumar V, Bhardwaj NK, Sharma C. Slime control in paper mill using biological agents as biocides. PHYSICAL SCIENCES REVIEWS 2021. [DOI: 10.1515/psr-2019-0049] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Abstract
The environmental conditions of paper mills are suitable for the growth of slime-forming microorganisms due to the supply of nutrients, favorable temperature, and moisture. The slime formation causes the spoilage of raw materials & additives, breaks in the paper during papermaking, loss of production, reduces the hygienic quality of the end products, produces off-spec and rejected products, creates microbiological corrosion, and produces harmful gases. The main microorganisms are Bacteria (mainly Bacillus spp., Achromobacter spp., Enterobacter spp., Pseudomonas spp., Clostridium, etc.), Fungi (Aspergillus, Penicillium, Saccharomyces, etc.), and Algae. Besides the use of conventional toxic chemical biocides or slimicides, slime formation can also be controlled in an eco-friendly way using enzymes, bacteriophages, biodispersants, and biocontrol agents alone or along with biocides to remove the slime. Enzymes have shown their effectiveness over conventional chemicals due to nontoxic and biodegradable nature to provide clean and sustainable technology. Globally enzymes are being used at some of the paper mills and many enzymatic products are presently being prepared and under the trail at laboratory scale. The specificity of enzymes to degrade a specific substrate is the main drawback of controlling the mixed population of microorganisms present in slime. The enzyme has the potential to provide the chemical biocide-free solution as a useful alternative in the future with the development of new technologies. Microorganisms control in the paper mill may appear as a costly offer but the cost of uncontrolled microbial growth can be much higher leading to slime production and large economic drain.
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Affiliation(s)
- Puneet Pathak
- Nanotechnology & Advanced Biomaterials , Avantha Centre for Industrial Research and Development , Paper mill campus , Yamuna Nagar , Haryana , 135001 India
| | - Varun Kumar
- Nanotechnology & Advanced Biomaterials , Avantha Centre for Industrial Research and Development , Paper mill campus , Yamuna Nagar , Haryana , 135001 India
| | - Nishi Kant Bhardwaj
- Directorate , Avantha Centre for Industrial Research and Development , Yamuna Nagar , Haryana , 135001 India
| | - Chhavi Sharma
- Women Scientist (WOS-A, DST) , Avantha Centre for Industrial Research & Development , Paper Mill Campus , Yamuna Nagar , India
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11
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Mehta D, Shah D. Cyanobacteria and microalgae growing on monuments of UNESCO World Heritage site Champaner Pavagadh, India: biofilms and their exopolysaccharide composition. Arch Microbiol 2021; 203:3425-3433. [PMID: 33891130 DOI: 10.1007/s00203-021-02334-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 04/12/2021] [Accepted: 04/13/2021] [Indexed: 10/21/2022]
Abstract
The present study investigated the biofilm organisms growing on selected monuments of the Champaner Pavagadh complex (Gujarat, India), which is a UNESCO World Heritage Site. The cyanobacteria and microalgae were isolated from biofilms collected through non-destructive methods. The identification of these biological organisms was done using micro-morphological characters and confirmed by 16S rRNA gene sequencing. The exopolysaccharide of each of the isolated strains was extracted, hydrolysed and analysed by the HPTLC. Six isolated strains representing five cyanobacteria and one microalga belong to the genera Desmonostoc, Nostoc, Leptolyngbya, Chroococcidiopsis and Asterarcys. The relationships between substrates' specificity of these isolated biofilm organisms and those identified globally were evaluated using maximum parsimony analysis to generate a consensus phylogenetic tree. The five strains of cyanobacteria isolated were closely clustered with cyanobacteria belonging to a tropical region. At the generic level, no relationship between the species and substratum specificity was recorded. The exopolysaccharide analysis of the isolated strains revealed the presence of seven monosaccharides. While glucose was present in all the analysed species, the concentration of either fucose or arabinose was high. The current study presents a novel HPTLC-based method for determination of monosaccharides composition from the extracellular polymeric substances.
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Affiliation(s)
- Disha Mehta
- Department of Botany, The Maharaja Sayajirao University of Baroda, Vadodara, India.
| | - Dharmendra Shah
- Department of Botany, The Maharaja Sayajirao University of Baroda, Vadodara, India
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12
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Blanco-Ameijeiras S, Cabanes DJE, Cable RN, Trimborn S, Jacquet S, Wiegmann S, Völkner C, Lelchat F, Bracher A, Duhaime MB, Hassler CS. Exopolymeric Substances Control Microbial Community Structure and Function by Contributing to both C and Fe Nutrition in Fe-Limited Southern Ocean Provinces. Microorganisms 2020; 8:E1980. [PMID: 33322799 PMCID: PMC7763086 DOI: 10.3390/microorganisms8121980] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 12/02/2020] [Accepted: 12/05/2020] [Indexed: 11/23/2022] Open
Abstract
Organic ligands such as exopolymeric substances (EPS) are known to form complexes with iron (Fe) and modulate phytoplankton growth. However, the effect of organic ligands on bacterial and viral communities remains largely unknown. Here, we assessed how Fe associated with organic ligands influences phytoplankton, microbial, and viral abundances and their diversity in the Southern Ocean. While the particulate organic carbon (POC) was modulated by Fe chemistry and bioavailability in the Drake Passage, the abundance and diversity of microbes and viruses were not governed by Fe bioavailability. Only following amendments with bacterial EPS did bacterial abundances increase, while phenotypic alpha diversity of bacterial and viral communities decreased. The latter was accompanied by significantly enhanced POC, pointing toward the relief of C limitation or other drivers of the microbial loop. Based on the literature and our findings, we propose a conceptual framework by which EPS may affect phytoplankton, bacteria, and viruses. Given the importance of the Southern Ocean for Earth's climate as well as the prevalence of viruses and their increasingly recognized impact on marine biogeochemistry and C cycling; the role of microbe-virus interactions on primary productivity in the Southern Ocean needs urgent attention.
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Affiliation(s)
- Sonia Blanco-Ameijeiras
- Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva—Faculty of Science, Boulevard Carl-Vogt 66, 1211 Geneva, Switzerland; (S.B.-A.); (D.J.E.C.); (F.L.); (C.S.H.)
| | - Damien J. E. Cabanes
- Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva—Faculty of Science, Boulevard Carl-Vogt 66, 1211 Geneva, Switzerland; (S.B.-A.); (D.J.E.C.); (F.L.); (C.S.H.)
| | - Rachel N. Cable
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA; (R.N.C.); (M.B.D.)
| | - Scarlett Trimborn
- Sections Ecological Chemistry and Physical Oceanography, Alfred Wegener Institute—Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany; (S.W.); (C.V.); (A.B.)
- Department Marine Botany, University of Bremen, Leobener Strasse NW2-A, 28359 Bremen, Germany
| | - Stéphan Jacquet
- INRAE, UMR CARRTEL, Université Savoie Mont-Blanc, 75bis Avenue de Corzent, 74200 Thonon-les-Bains, France ;
| | - Sonja Wiegmann
- Sections Ecological Chemistry and Physical Oceanography, Alfred Wegener Institute—Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany; (S.W.); (C.V.); (A.B.)
| | - Christian Völkner
- Sections Ecological Chemistry and Physical Oceanography, Alfred Wegener Institute—Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany; (S.W.); (C.V.); (A.B.)
| | - Florian Lelchat
- Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva—Faculty of Science, Boulevard Carl-Vogt 66, 1211 Geneva, Switzerland; (S.B.-A.); (D.J.E.C.); (F.L.); (C.S.H.)
- Leo Viridis, 245 rue René Descartes, 29280 Plouzané, Bretagne, France
| | - Astrid Bracher
- Sections Ecological Chemistry and Physical Oceanography, Alfred Wegener Institute—Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, 27570 Bremerhaven, Germany; (S.W.); (C.V.); (A.B.)
- Institute of Environmental Physics, University Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany
| | - Melissa B. Duhaime
- Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA; (R.N.C.); (M.B.D.)
| | - Christel S. Hassler
- Department F.-A. Forel for Environmental and Aquatic Sciences, University of Geneva—Faculty of Science, Boulevard Carl-Vogt 66, 1211 Geneva, Switzerland; (S.B.-A.); (D.J.E.C.); (F.L.); (C.S.H.)
- Swiss Polar Institute, Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
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13
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Battling Biofilm Forming Nosocomial Pathogens Using Chitosan and Pluronic F127. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2020. [DOI: 10.22207/jpam.14.3.28] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Biofilm represents a potential strut in bacterial treatment failure. It has a dual action; it affords microbial resistance against antibiotics and facilitate transmission of pathogenic bacteria. Nosocomial bacteria pose a serious problem in healthcare units; it prolongs patient hospital stay and increases the mortality rates beside other awful economical effect. This study was planned for targeting nosocomial bacterial biofilm using natural and biologically safe compounds like Chitosan and/or Pluronic F127. Ninety-five isolates were recovered from 107 nosocomial clinical samples. Different bacterial and fungal species were detected, from which Klebsiella pneumonia (23%), Pseudomonas aeruginosa (19%), Acinetobacter baumannii (18%) and E.coli (17%) were the predominate organisms. Pseudomonas aeruginosa, Acinetobacter baumanni and Klebsiella pneumonia were the abundant antibiotic resistant strains with multi-resistance pattern of 72%, 65% and 59%, respectively. A significant percentage of these isolates were strong biofilm forming. Herein, we investigate the effect of Chitosan and Pluronic F127 alone and in combination with each other against biofilm production. Chitosan show variable degree of biofilm inhibition, while Pluronic F127 was able to retard biofilm formation by 80% to 90% in most strain. There is no significant difference (P< 0.05) between Pluronic F127 alone and its effect in combination with Chitosan.
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14
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Hou R, Luo C, Zhou S, Wang Y, Yuan Y, Zhou S. Anode potential-dependent protection of electroactive biofilms against metal ion shock via regulating extracellular polymeric substances. WATER RESEARCH 2020; 178:115845. [PMID: 32353609 DOI: 10.1016/j.watres.2020.115845] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Revised: 04/01/2020] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
Extracellular polymeric substances (EPS) have been considered as a barrier for toxic species penetration into the cells, but their function in protecting electroactive biofilms (EABs) had been rarely revealed. In this study, the anode potential was used to regulate the EPS quantity and components in mixed-culture EABs, where their resistance to Ag+ shock was assessed. The results showed that the EAB grown at 0 V showed the highest anti-shock capability by the Ag+ exposure compared to those grown at -0.2, 0.2, and 0.4 V. The EAB produced at 0 V had both of the highest amounts of loosely bound EPS (LB-EPS; 61.9 mg-EPS/g-VSS) and tightly bound EPS (TB-EPS; 74.8 mg-EPS/g-VSS) than those grown under other potentials, where proteins and humic acid were the predominated components. The abundance of genes associated with EPS biosynthesis were also confirmed to be related with the applied anode potentials, based on the metagenomic analysis. Considering proteins and humic acid in LB-EPS showed positive linearity with the current recovery and viability of the EABs, these two main components might play important roles in reducing the Ag+ toxicity. Synchronous fourier transform infrared (FTIR) spectroscopy integrated two-dimensional correlation spectroscopy (2D-COS) analyses further confirmed that the oxygen and nitrogen moieties (i.e. amide, carbonyl CO, phenolic, and C-O-C) in proteins and humic acid of the LB-EPS were response for the binding with the Ag+ to prevent the penetration into the cells. The underlying molecular mechanisms of EPS in protecting EABs from the Ag+ shock explored in this study can provide implications for developing new methods to construct highly stable EABs.
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Affiliation(s)
- Rui Hou
- Guangzhou Key Laboratory Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, 510006, China
| | - Cheng Luo
- Guangzhou Key Laboratory Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, 510006, China
| | - Shaofeng Zhou
- Guangzhou Key Laboratory Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, 510006, China
| | - Yi Wang
- Guangzhou Key Laboratory Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, 510006, China
| | - Yong Yuan
- Guangzhou Key Laboratory Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, 510006, China.
| | - Shungui Zhou
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, School of Resources and Environment, Fujian Agriculture and Forestry, Fuzhou, 350000, China
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15
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Lelchat F, Mocaer PY, Ojima T, Michel G, Sarthou G, Bucciarelli E, Cérantola S, Colliec-Jouault S, Boisset C, Baudoux AC. Viral degradation of marine bacterial exopolysaccharides. FEMS Microbiol Ecol 2020; 95:5498295. [PMID: 31125051 DOI: 10.1093/femsec/fiz079] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Accepted: 05/23/2019] [Indexed: 11/14/2022] Open
Abstract
The identification of the mechanisms by which marine dissolved organic matter (DOM) is produced and regenerated is critical to develop robust prediction of ocean carbon cycling. Polysaccharides represent one of the main constituents of marine DOM and their degradation is mainly attributed to polysaccharidases derived from bacteria. Here, we report that marine viruses can depolymerize the exopolysaccharides (EPS) excreted by their hosts using five bacteriophages that infect the notable EPS producer, Cobetia marina DSMZ 4741. Degradation monitorings as assessed by gel electrophoresis and size exclusion chromatography showed that four out of five phages carry structural enzymes that depolymerize purified solution of Cobetia marina EPS. The depolymerization patterns suggest that these putative polysaccharidases are constitutive, endo-acting and functionally diverse. Viral adsorption kinetics indicate that the presence of these enzymes provides a significant advantage for phages to adsorb onto their hosts upon intense EPS production conditions. The experimental demonstration that marine phages can display polysaccharidases active on bacterial EPS lead us to question whether viruses could also contribute to the degradation of marine DOM and modify its bioavailability. Considering the prominence of phages in the ocean, such studies may unveil an important microbial process that affects the marine carbon cycle.
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Affiliation(s)
- F Lelchat
- Laboratoire BMM, centre Ifremer de Brest, ZI pointe du diable, 29280 Plouzané, France
| | - P Y Mocaer
- Sorbonne Université, CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Roscoff, France
| | - T Ojima
- Laboratory of Marine Biotechnology and Microbiology, Graduate School of Fisheries Sciences, Hokkaido University, Minato-cho 3-1-1, Hakodate 041-8611, Japan
| | - G Michel
- Sorbonne Université, CNRS, Laboratoire de Biologie Intégrative des Modèles Marins UMR 8227, Station Biologique de Roscoff, Roscoff, France
| | - G Sarthou
- CNRS, Université de Brest, IRD, Ifremer, UMR 6539/LEMAR/IUEM, Technopôle Brest Iroise, Place Nicolas Copernic, 29280 Plouzané, France
| | - E Bucciarelli
- CNRS, Université de Brest, IRD, Ifremer, UMR 6539/LEMAR/IUEM, Technopôle Brest Iroise, Place Nicolas Copernic, 29280 Plouzané, France
| | - S Cérantola
- Service commun de résonnance magnétique nucléaire, Faculté de science de Brest, Université de Bretagne Occidentale, 6 av. Victor Le Gorgeu, 29238 Brest Cedex 3, France
| | - S Colliec-Jouault
- Laboratoire EM3B, Centre Ifremer Atlantique - Rue de l'Ile d'Yeu - 44311 Nantes, France
| | - C Boisset
- Service commun de chromatographie, CERMAV-CNRS, 601 rue de la chimie, St Martin d'Hère, 38041 Grenoble, France
| | - A-C Baudoux
- Sorbonne Université, CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Roscoff, France
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16
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Li A, Luo H, Hu T, Huang J, Alam NU, Meng Y, Meng F, Korkor NL, Hu X, Li O. Screening and enzymatic activity of high-efficiency gellan lyase producing bacteria Pseudoalteromonas hodoensis PE1. Bioengineered 2019; 10:240-249. [PMID: 31181994 PMCID: PMC6592359 DOI: 10.1080/21655979.2019.1628882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2019] [Revised: 05/27/2019] [Accepted: 05/30/2019] [Indexed: 11/06/2022] Open
Abstract
Gellan is a widely used microbial polysaccharide and one of the more effective ways to expand its application value would be to investigate the mechanism of gellan lyase and to produce gellan oligosaccharide. In this study, efficient gellan degrading bacteria were screened. One of the strains with high efficient gellan degradation capacity was labeled PE1. Through physiological and biochemical analysis of 16S rDNA, the species was identified as Pseudoalteromonas hodoensis. The optimum conditions for enzymatic activity and how it was affected by metal ions were determined, and the results showed that the lyase activities were much higher than those of previously reported (about 20 times). The gellan degradation products were determined by thin-layer chromatography and the oligosaccharides were determined by high-efficiency liquid chromatography to analyze the action site of lyase. This study laid a solid foundation which elucidates the production and application of gellan oligosaccharides. Research highlights ● High efficiency gellan lyase producing bacteria ● Optimization of reaction conditions for gellan degradation ● Oligosaccharides were detected by TLC and HPLC to speculate the lyase action sites.
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Affiliation(s)
- Ang Li
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Hangqi Luo
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Tingting Hu
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Jingyu Huang
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Nafee-Ul Alam
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Yuan Meng
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Fenbin Meng
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Nartey Linda Korkor
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Xiufang Hu
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
| | - Ou Li
- College of Life Science and Medicine, Zhejiang Sci-Tech University, Hangzhou, China
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17
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Campoccia D, Mirzaei R, Montanaro L, Arciola CR. Hijacking of immune defences by biofilms: a multifront strategy. BIOFOULING 2019; 35:1055-1074. [PMID: 31762334 DOI: 10.1080/08927014.2019.1689964] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Revised: 10/05/2019] [Accepted: 11/04/2019] [Indexed: 06/10/2023]
Abstract
Biofilm formation by pathogens and opportunistic bacteria is the basis of persistent or recurrent infections. Up to 80% of bacterial infections in humans are associated with biofilms. Despite the efficiency of the evolved and complex human defence system against planktonic bacteria, biofilms are capable of subverting host defences. The immune system is not completely effective in opposing bacteria and preventing infection. Increasing attention is being focussed on the mechanisms enabling bacterial biofilms to skew the coordinate action of humoral and cell mediated responses. Knowledge of the interactions between biofilm bacteria and the immune system is critical to effectively address biofilm infections, which have multiplied over the years with the spread of biomaterials in medicine. In this article, the latest information on the interactions between bacterial biofilms and immune cells is examined and the areas where of information is still lacking are explored.
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Affiliation(s)
- Davide Campoccia
- Laboratorio di Patologia delle Infezioni Associate all'Impianto, IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy
| | - Rasoul Mirzaei
- Department of Microbiology, Faculty of Medicine, Iran University of Medical Sciences, Tehran, Iran
| | - Lucio Montanaro
- Laboratorio di Patologia delle Infezioni Associate all'Impianto, IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy
- Department of Experimental, Diagnostic, and Specialty Medicine, University of Bologna, Bologna, Italy
| | - Carla Renata Arciola
- Laboratorio di Patologia delle Infezioni Associate all'Impianto, IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy
- Department of Experimental, Diagnostic, and Specialty Medicine, University of Bologna, Bologna, Italy
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18
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Eswaran R, Khandeparker L. Seasonal variation in β-glucosidase-producing culturable bacterial diversity in a monsoon-influenced tropical estuary. ENVIRONMENTAL MONITORING AND ASSESSMENT 2019; 191:662. [PMID: 31650269 DOI: 10.1007/s10661-019-7818-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Accepted: 09/11/2019] [Indexed: 06/10/2023]
Abstract
The episodic monsoon condition in a tropical estuarine environment inputs high allochthonous materials that are rich in carbohydrates and are mainly broken down by enzymatic hydrolysis thus alter both organic matter and microbial community composition of an estuary. β-Glucosidases are one of the enzymes mediating the degradation of carbohydrates and are majorly produced by heterotrophic bacteria. The present study elucidated β-glucosidase-producing culturable bacterial diversity and measured their activity during non-monsoon and monsoon seasons in Zuari estuary. The results revealed that both bacterial abundance and β-glucosidase activity decreased significantly from non-monsoon to monsoon, whereas phylogenetic diversity increased. Majority of β-glucosidase producers during non-monsoon belonged to the members of Bacillales (53%), Pseudomonadales (26%), and Vibrionales (11%) which shifted to the members of Enterobacteriales (51%), Bacillales (14%), Alteromonadales (12%), Aeromonadales (9%), Xanthomonadales (7%), Pseudomonadales (5%), and Flavobacteriales (2%) during the monsoon. The shift in bacterial community structure points out the occurrence of different allochthonous forms with carbohydrate-metabolizing ability during the monsoon, and their relevance in ecology and health of this estuary can be elucidated by studying their functional diversity and is a step ahead.
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Affiliation(s)
- Ranjith Eswaran
- CSIR-National Institute of Oceanography, Dona Paula, Goa, 403004, India
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19
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Rhizobium spp exopolysaccharides production and xanthan lyase use on its structural modification. Int J Biol Macromol 2019; 136:424-435. [DOI: 10.1016/j.ijbiomac.2019.06.077] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 05/25/2019] [Accepted: 06/11/2019] [Indexed: 12/15/2022]
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20
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Panariello BH, Klein MI, Alves F, Pavarina AC. DNase increases the efficacy of antimicrobial photodynamic therapy on Candida albicans biofilms. Photodiagnosis Photodyn Ther 2019; 27:124-131. [DOI: 10.1016/j.pdpdt.2019.05.038] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Revised: 04/29/2019] [Accepted: 05/28/2019] [Indexed: 12/21/2022]
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21
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Effect of proteases secreted from a marine isolated bacterium Bacillus vietnamensis on the corrosion behaviour of different alloys. Bioelectrochemistry 2019; 126:64-71. [DOI: 10.1016/j.bioelechem.2018.08.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Revised: 08/13/2018] [Accepted: 08/19/2018] [Indexed: 12/30/2022]
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22
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Geredew Kifelew L, Mitchell JG, Speck P. Mini-review: efficacy of lytic bacteriophages on multispecies biofilms. BIOFOULING 2019; 35:472-481. [PMID: 31144513 DOI: 10.1080/08927014.2019.1613525] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Revised: 04/07/2019] [Accepted: 04/27/2019] [Indexed: 06/09/2023]
Abstract
There is potential for phages to prevent and control bacterial biofilms, but few studies have examined the effect of phages on the multispecies biofilms that characterize most bacterial infections. This paper reviews the mechanism of action of phages, the evidence supporting the view that phage therapy will be effective against bacterial targets and the opposite viewpoint, phage application approaches, and the comparative advantage of phage therapy in multispecies biofilms. The few reports measuring the actions of lytic phages against multispecies biofilms are also reviewed. The authors are cautiously optimistic about the application of phages against their targets when in multispecies biofilms because some lysis mechanisms do not require species specificity.
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Affiliation(s)
| | - James G Mitchell
- a Flinders University, College of Science and Engineering , Bedford Park , South Australia
| | - Peter Speck
- a Flinders University, College of Science and Engineering , Bedford Park , South Australia
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23
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24
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Chen L, Yuan S, Liu Q, Mai G, Yang J, Deng D, Zhang B, Liu C, Ma Y. In Vitro Design and Evaluation of Phage Cocktails Against Aeromonas salmonicida. Front Microbiol 2018; 9:1476. [PMID: 30034378 PMCID: PMC6043867 DOI: 10.3389/fmicb.2018.01476] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Accepted: 06/13/2018] [Indexed: 01/21/2023] Open
Abstract
As an alternative approach against multidrug-resistant bacterial infections, phages are now being increasingly investigated as effective therapeutic agents. Here, aiming to design an efficient phage cocktail against Aeromonas salmonicida infections, we isolated and characterized five lytic A. salmonicida phages, AS-szw, AS-yj, AS-zj, AS-sw, and AS-gz. The results of morphological and genomic analysis suggested that all these phages are affiliated to the T4virus genus of the Caudovirales order. Their heterogeneous lytic capacities against A. salmonicida strains were demonstrated by experiments. A series of phage cocktails were prepared and investigated in vitro. We observed that the cocktail combining AS-gz and AS-yj showed significantly higher antimicrobial activity than other cocktails and individual phages. Given the divergent genomes between the phages AS-yj and AS-gz, our results highlight that the heterogeneous mechanisms that phages use to infect their hosts likely lead to phage synergy in killing the host. Conclusively, our study described a strategy to develop an effective and promising phage cocktail as a therapeutic agent to combat A. salmonicida infections, and thereby to control the outbreak of relevant fish diseases. Our study suggests that in vitro investigations into phages are prerequisite to obtain satisfying phage cocktails prior to application in practice.
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Affiliation(s)
- Ling Chen
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Shengjian Yuan
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Quan Liu
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.,College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Guoqin Mai
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Jinfang Yang
- R&D Center, Shenzhen Alpha Feed Co., Ltd., Shenzhen, China
| | - Deng Deng
- R&D Center, Shenzhen Alpha Feed Co., Ltd., Shenzhen, China
| | - Bingzhao Zhang
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Chenli Liu
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
| | - Yingfei Ma
- Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China
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25
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Castro JPLD, Costa LEC, Pinheiro MP, Francisco TDS, Vasconcelos PHMD, Funari LM, Daudt RM, Santos GRCD, Cardozo NSM, Freitas ALP. Polysaccharides of red alga Gracilaria intermedia: structure, antioxidant activity and rheological behavior. POLIMEROS 2018. [DOI: 10.1590/0104-1428.013116] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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26
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Enzymatic depolymerization of the GY785 exopolysaccharide produced by the deep-sea hydrothermal bacterium Alteromonas infernus : Structural study and enzyme activity assessment. Carbohydr Polym 2018. [DOI: 10.1016/j.carbpol.2018.01.086] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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27
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Gafri HFS, Mohamed Zuki F, Aroua MK, Hashim NA. Mechanism of bacterial adhesion on ultrafiltration membrane modified by natural antimicrobial polymers (chitosan) and combination with activated carbon (PAC). REV CHEM ENG 2018. [DOI: 10.1515/revce-2017-0006] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Abstract
Bacterial adhesion to surfaces is related to several factors, such as surface charge, surface energy, and substrate characteristics (leading to the formation of biofilms). Organisms are dominant in most environmental, industrial, and medical problems and processes that are of interest to microbiologists. Biofilm cells are at least 500 times more resistant to antibacterial agents compared to planktonic cells. The usage of ultrafiltration membranes is fast becoming popular for water treatment. Membrane lifetime and permeate flux are primarily affected by the phenomena of microbial accumulation and fouling at the membrane’s surface. This review intends to understand the mechanism of membrane fouling by bacterial attachment on polymeric ultrafiltration membrane modified by natural antimicrobial polymers (chitosan) combined with powder activated carbon. Also, to guide future research on membrane water treatment processes, adhesion prediction using the extended Derjaguin-Landau-Verwey-Overbeek theory is discussed.
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Affiliation(s)
- Hasan Fouzi S. Gafri
- Department of Chemical Engineering , University of Malaya , 50603 Kuala Lumpur , Malaysia
| | - Fathiah Mohamed Zuki
- Department of Chemical Engineering , University of Malaya , 50603 Kuala Lumpur , Malaysia
| | - Mohamed Kheireddine Aroua
- Centre for Carbon Dioxide Capture and Utilization (CCDCU), School of Science and Technology , Sunway University, Bandar Sunway , 47500 Petaling Jaya , Malaysia
- Department of Engineering , Lancaster University , Lancaster, LA1 4YW , UK
| | - Nur Awanis Hashim
- Department of Chemical Engineering , University of Malaya , 50603 Kuala Lumpur , Malaysia
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28
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Nouha K, Kumar RS, Balasubramanian S, Tyagi RD. Critical review of EPS production, synthesis and composition for sludge flocculation. J Environ Sci (China) 2018; 66:225-245. [PMID: 29628091 DOI: 10.1016/j.jes.2017.05.020] [Citation(s) in RCA: 136] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2016] [Revised: 05/12/2017] [Accepted: 05/12/2017] [Indexed: 05/08/2023]
Abstract
Extracellular polymeric substances (EPS) produced by microorganisms represent biological macromolecules with unfathomable potentials and they are required to be explored further for their potential application as a bioflocculant in various wastewater sludge treatment. Although several studies already exist on biosynthetic pathways of different classical biopolymers like alginate and xanthan, no dedicated studies are available for EPS in sludge. This review highlights the EPS composition, functionality, and biodegradability for its potential use as a carbon source for production of other metabolites. Furthermore, the effect of various extraction methods (physical and chemical) on compositional, structural, physical and functional properties of microbial EPS has been addressed. The vital knowledge of the effect of extraction method on various important attributes of EPS can help to choose the suitable extraction method depending upon the intended use of EPS. The possible use of different molecular biological techniques for enhanced production of desired EPS was summarized.
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Affiliation(s)
- Klai Nouha
- Université du Québec, Institut national de la Recherche Scientifique, Centre Eau, Terre & Environnement, 490 de la Couronne, Québec G1K 9A9, Canada
| | - Ram Saurabh Kumar
- Université du Québec, Institut national de la Recherche Scientifique, Centre Eau, Terre & Environnement, 490 de la Couronne, Québec G1K 9A9, Canada.
| | | | - Rajeshwar Dayal Tyagi
- Université du Québec, Institut national de la Recherche Scientifique, Centre Eau, Terre & Environnement, 490 de la Couronne, Québec G1K 9A9, Canada
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29
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Geobacillus and Anoxybacillus spp. from Terrestrial Geothermal Springs Worldwide: Diversity and Biotechnological Applications. EXTREMOPHILES IN EURASIAN ECOSYSTEMS: ECOLOGY, DIVERSITY, AND APPLICATIONS 2018. [DOI: 10.1007/978-981-13-0329-6_5] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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30
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Pyra A, Brzozowska E, Pawlik K, Gamian A, Dauter M, Dauter Z. Tail tubular protein A: a dual-function tail protein of Klebsiella pneumoniae bacteriophage KP32. Sci Rep 2017; 7:2223. [PMID: 28533535 PMCID: PMC5440376 DOI: 10.1038/s41598-017-02451-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Accepted: 04/11/2017] [Indexed: 11/09/2022] Open
Abstract
Tail tubular protein A (TTPA) is a structural tail protein of Klebsiella pneumoniae bacteriophage KP32, and is responsible for adhering the bacteriophage to host cells. For the first time, we found that TTPA also exhibits lytic activity towards capsular exopolysaccharide (EPS) of the multiresistant clinical strain of Klebsiella pneumoniae, PCM2713, and thus should be regarded as a dual-function macromolecule that exhibits both structural and enzymatic actions. Here, we present our crystallographic and enzymatic studies of TTPA. TTPA was crystallized and X-ray diffraction data were collected to a resolution of 1.9 Å. In the crystal, TTPA molecules were found to adopt a tetrameric structure with α-helical domains on one side and β-strands and loops on the other. The novel crystal structure of TTPA resembles those of the bacteriophage T7 tail protein gp11 and gp4 of bacteriophage P22, but TTPA contains an additional antiparallel β-sheet carrying a lectin-like domain that could be responsible for EPS binding. The enzymatic activity of TTPA may reflect the presence of a peptidoglycan hydrolase domain in the α-helical region (amino acid residues 126 to 173). These novel results provide new insights into the enzymatic mechanism through which TTPA acts on polysaccharides.
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Affiliation(s)
- Anna Pyra
- University of Wroclaw, Faculty of Chemistry, Department of Crystallography, 14 F. Joliot-Curie, Wroclaw, 50383, Poland.
| | - Ewa Brzozowska
- Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, 12 R. Weigl, Wroclaw, 53114, Poland.
| | - Krzysztof Pawlik
- Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, 12 R. Weigl, Wroclaw, 53114, Poland
| | - Andrzej Gamian
- Hirszfeld Institute of Immunology and Experimental Therapy, Polish Academy of Sciences, 12 R. Weigl, Wroclaw, 53114, Poland
| | - Miroslawa Dauter
- Leidos Biomedical Research Inc., Basic Research Program, Argonne National Laboratory, Argonne, IL, 60439, USA
| | - Zbigniew Dauter
- Synchrotron Radiation Research Section, MCL, National Cancer Institute, Argonne National Laboratory, Argonne, IL, 60439, USA
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Recent advances in endophytic exopolysaccharides: Production, structural characterization, physiological role and biological activity. Carbohydr Polym 2017; 157:1113-1124. [DOI: 10.1016/j.carbpol.2016.10.084] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Revised: 10/24/2016] [Accepted: 10/27/2016] [Indexed: 01/08/2023]
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Azevedo AS, Almeida C, Melo LF, Azevedo NF. Impact of polymicrobial biofilms in catheter-associated urinary tract infections. Crit Rev Microbiol 2016; 43:423-439. [PMID: 28033847 DOI: 10.1080/1040841x.2016.1240656] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Recent reports have demonstrated that most biofilms involved in catheter-associated urinary tract infections are polymicrobial communities, with pathogenic microorganisms (e.g. Escherichia coli, Pseudomonas aeruginosa, Klebsiella pneumoniae) and uncommon microorganisms (e.g. Delftia tsuruhatensis, Achromobacter xylosoxidans) frequently co-inhabiting the same urinary catheter. However, little is known about the interactions that occur between different microorganisms and how they impact biofilm formation and infection outcome. This lack of knowledge affects CAUTIs management as uncommon bacteria action can, for instance, influence the rate at which pathogens adhere and grow, as well as affect the overall biofilm resistance to antibiotics. Another relevant aspect is the understanding of factors that drive a single pathogenic bacterium to become prevalent in a polymicrobial community and subsequently cause infection. In this review, a general overview about the IMDs-associated biofilm infections is provided, with an emphasis on the pathophysiology and the microbiome composition of CAUTIs. Based on the available literature, it is clear that more research about the microbiome interaction, mechanisms of biofilm formation and of antimicrobial tolerance of the polymicrobial consortium are required to better understand and treat these infections.
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Affiliation(s)
- Andreia S Azevedo
- a Department of Chemical Engineering, Faculty of Engineering , Laboratory for Process Engineering, Environment, and Energy and Biotechnology Engineering (LEPABE), University of Porto , Porto , Portugal
| | - Carina Almeida
- a Department of Chemical Engineering, Faculty of Engineering , Laboratory for Process Engineering, Environment, and Energy and Biotechnology Engineering (LEPABE), University of Porto , Porto , Portugal.,b Institute for Biotechnology and Bioengineering (IBB), Centre of Biological Engineering, Universidade do Minho , Braga , Portugal
| | - Luís F Melo
- a Department of Chemical Engineering, Faculty of Engineering , Laboratory for Process Engineering, Environment, and Energy and Biotechnology Engineering (LEPABE), University of Porto , Porto , Portugal
| | - Nuno F Azevedo
- a Department of Chemical Engineering, Faculty of Engineering , Laboratory for Process Engineering, Environment, and Energy and Biotechnology Engineering (LEPABE), University of Porto , Porto , Portugal
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Alp Avci G. Selection of superior bifidobacteria in the presence of rotavirus. ACTA ACUST UNITED AC 2016; 49:e5562. [PMID: 27849251 PMCID: PMC5122309 DOI: 10.1590/1414-431x20165562] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Accepted: 09/13/2016] [Indexed: 01/28/2023]
Abstract
The main purpose of this study was to investigate bifidobacteria flora in fecal
samples from children with rotavirus infection and determine the significance of
their selected probiotic properties for improvement of health status. Enzyme-linked
immunosorbent assay was used to identify rotavirus antigen in fecal samples from 94
patients with gastroenteritis and from 30 without gastroenteritis. Bifidobacteria
were identified by selective media, gram reaction, colony morphology,
fructose-6-phosphate phosphoketolase enzyme activity and classical identification
tests. Exopolysaccharide (EPS) production was identified by phenol-sulphuric acid
method. The modified method was then used to identify the quantity of taurocholic and
glycocholic acid deconjugation and cholesterol elimination of the strains.
Thirty-five of the 94 fecal samples were found positive for rotavirus antigen
(37.23%). Bifidobacteria were identified in 59 of the samples. The EPS production
ranges were 29.56-102.21 mg/L. The cholesterol elimination rates ranged between
8.36-39.22%. Furthermore, a positive and strong correlation was determined between
EPS production and the presence of cholesterol (r=0.984,
P<0.001). The deconjugation rates for the sodium glycocholate group was higher
than the sodium taurocholate group. Rotavirus (+) bifidobacteria strains had higher
EPS production, deconjugation rate and cholesterol elimination compared to
bifidobacteria strains isolated from children in the rotavirus (-) sample and without
gastroenteritis. Significant differences were observed among groups in all parameters
(P<0.05). Given the increased number of rotavirus cases in Turkey and worldwide,
it is very important to add superior bifidobacteria in the diets of infected children
to improve the intestinal and vital functions.
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Affiliation(s)
- G Alp Avci
- Department of Molecular Biology and Genetics, Molecular Microbiology and Biotechnology, Faculty of Science and Arts, Hitit University, Corum, Turkey
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Analysis of exopolysaccharide production patterns of Cordyceps militaris under various light-emitting diodes. Biochem Eng J 2016. [DOI: 10.1016/j.bej.2016.04.028] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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van der Kooij D, Martijn B, Schaap PG, Hoogenboezem W, Veenendaal HR, van der Wielen PWJJ. Improved biostability assessment of drinking water with a suite of test methods at a water supply treating eutrophic lake water. WATER RESEARCH 2015; 87:347-355. [PMID: 26451977 DOI: 10.1016/j.watres.2015.09.043] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Revised: 09/24/2015] [Accepted: 09/25/2015] [Indexed: 06/05/2023]
Abstract
Assessment of drinking-water biostability is generally based on measuring bacterial growth in short-term batch tests. However, microbial growth in the distribution system is affected by multiple interactions between water, biofilms and sediments. Therefore a diversity of test methods was applied to characterize the biostability of drinking water distributed without disinfectant residual at a surface-water supply. This drinking water complied with the standards for the heterotrophic plate count and coliforms, but aeromonads periodically exceeded the regulatory limit (1000 CFU 100 mL(-1)). Compounds promoting growth of the biopolymer-utilizing Flavobacterium johnsoniae strain A3 accounted for c. 21% of the easily assimilable organic carbon (AOC) concentration (17 ± 2 μg C L(-1)) determined by growth of pure cultures in the water after granular activated-carbon filtration (GACF). Growth of the indigenous bacteria measured as adenosine tri-phosphate in water samples incubated at 25 °C confirmed the low AOC in the GACF but revealed the presence of compounds promoting growth after more than one week of incubation. Furthermore, the concentration of particulate organic carbon in the GACF (83 ± 42 μg C L(-1), including 65% carbohydrates) exceeded the AOC concentration. The increased biomass accumulation rate in the continuous biofouling monitor (CBM) at the distribution system reservoir demonstrated the presence of easily biodegradable by-products related to ClO2 dosage to the GACF and in the CBM at 42 km from the treatment plant an iron-associated biomass accumulation was observed. The various methods applied thus distinguished between easily assimilable compounds, biopolymers, slowly biodegradable compounds and biomass-accumulation potential, providing an improved assessment of the biostability of the water. Regrowth of aeromonads may be related to biomass-turnover processes in the distribution system, but establishment of quantitative relationships is needed for confirmation.
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Affiliation(s)
- Dick van der Kooij
- KWR Watercycle Research Institute, Post Box 1072, 3430 BB Nieuwegein, The Netherlands.
| | - Bram Martijn
- PWN Technologies, PO Box 2046, 1990 AA Velserbroek, The Netherlands.
| | - Peter G Schaap
- Water Supply Company Noord-Holland PWN, Rijksweg 501, Velserbroek, The Netherlands.
| | - Wim Hoogenboezem
- Het Waterlaboratorium, J.W. Lucasweg 2, 2031 BE Haarlem, The Netherlands.
| | - Harm R Veenendaal
- KWR Watercycle Research Institute, Post Box 1072, 3430 BB Nieuwegein, The Netherlands
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Zhang Z, Chen Y, Wang R, Cai R, Fu Y, Jiao N. The Fate of Marine Bacterial Exopolysaccharide in Natural Marine Microbial Communities. PLoS One 2015; 10:e0142690. [PMID: 26571122 PMCID: PMC4646686 DOI: 10.1371/journal.pone.0142690] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2015] [Accepted: 10/26/2015] [Indexed: 12/02/2022] Open
Abstract
Most marine bacteria produce exopolysaccharides (EPS), and bacterial EPS represent an important source of dissolved organic carbon in marine ecosystems. It was proposed that bacterial EPS rich in uronic acid is resistant to mineralization by microbes and thus has a long residence time in global oceans. To confirm this hypothesis, bacterial EPS rich in galacturonic acid was isolated from Alteromonas sp. JL2810. The EPS was used to amend natural seawater to investigate the bioavailability of this EPS by native populations, in the presence and absence of ammonium and phosphate amendment. The data indicated that the bacterial EPS could not be completely consumed during the cultivation period and that the bioavailability of EPS was not only determined by its intrinsic properties, but was also determined by other factors such as the availability of inorganic nutrients. During the experiment, the humic-like component of fluorescent dissolved organic matter (FDOM) was freshly produced. Bacterial community structure analysis indicated that the class Flavobacteria of the phylum Bacteroidetes was the major contributor for the utilization of EPS. This report is the first to indicate that Flavobacteria are a major contributor to bacterial EPS degradation. The fraction of EPS that could not be completely utilized and the FDOM (e.g., humic acid-like substances) produced de novo may be refractory and may contribute to the carbon storage in the oceans.
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Affiliation(s)
- Zilian Zhang
- State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, Fujian, People’s Republic of China
- * E-mail: (NJ); (ZZ)
| | - Yi Chen
- State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, Fujian, People’s Republic of China
| | - Rui Wang
- State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, Fujian, People’s Republic of China
| | - Ruanhong Cai
- State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, Fujian, People’s Republic of China
| | - Yingnan Fu
- State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, Fujian, People’s Republic of China
| | - Nianzhi Jiao
- State Key Laboratory of Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, Fujian, People’s Republic of China
- * E-mail: (NJ); (ZZ)
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Gupta P, Sarkar S, Das B, Bhattacharjee S, Tribedi P. Biofilm, pathogenesis and prevention--a journey to break the wall: a review. Arch Microbiol 2015; 198:1-15. [PMID: 26377585 DOI: 10.1007/s00203-015-1148-6] [Citation(s) in RCA: 236] [Impact Index Per Article: 26.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Revised: 09/02/2015] [Accepted: 09/07/2015] [Indexed: 01/31/2023]
Abstract
Biofilms contain group(s) of microorganisms that are found to be associated with the biotic and abiotic surfaces. Biofilms contain either homogenous or heterogeneous populations of bacteria which remain in the matrix made up of extracellular polymeric substances secreted by constituent population of the biofilm. Biofilms can be either single or multilayered. Biofilms are an increasing issue of concern that is gaining importance with each passing day. Due to the ubiquitous nature of biofilms, it is difficult to eradicate them. It has been seen that many infectious diseases harbour biofilms of bacterial pathogens as the reservoir of persisting infections which can prove fatal at times. The presence of biofilms can be seen in diseases like endocarditis, cystic fibrosis, periodontitis, rhinosinusitis and osteomyelitis. The presence of biofilms has been mostly seen in medical implants and urinary catheters. Various signalling events including two-component signalling, extra cytoplasmic function and quorum sensing are involved in the formation of biofilms. The presence of an extracellular polymeric matrix in biofilms makes it difficult for the antimicrobials to act on them and make the bacteria tolerant to antibiotics and other drugs. The aim of this review was to discuss about the basic formation of a biofilm, various signalling cascades involved in biofilm formation, possible mechanisms of drug resistance in biofilms and recent therapeutic approaches involved in successful eradication of biofilms.
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Affiliation(s)
- Priya Gupta
- Department of Molecular Biology and Bioinformatics, Tripura University (A Central University), Suryamaninagar, Agartala, Tripura, 799022, India.
| | - Subhasis Sarkar
- Department of Molecular Biology and Bioinformatics, Tripura University (A Central University), Suryamaninagar, Agartala, Tripura, 799022, India.
| | - Bannhi Das
- Department of Biotechnology, Mount Carmel College, Bangalore, 560 052, India.
| | - Surajit Bhattacharjee
- Department of Molecular Biology and Bioinformatics, Tripura University (A Central University), Suryamaninagar, Agartala, Tripura, 799022, India.
| | - Prosun Tribedi
- Department of Microbiology, Assam Don Bosco University, Guwahati, Assam, 781017, India.
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Zevin AS, Nam T, Rittmann B, Krajmalnik-Brown R. Effects of phosphate limitation on soluble microbial products and microbial community structure in semi-continuousSynechocystis-based photobioreactors. Biotechnol Bioeng 2015; 112:1761-9. [DOI: 10.1002/bit.25602] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2015] [Revised: 02/19/2015] [Accepted: 03/06/2015] [Indexed: 11/09/2022]
Affiliation(s)
- Alexander S. Zevin
- Swette Center for Environmental Biotechnology; Arizona State University; Tempe Arizona
| | - Taekgul Nam
- Swette Center for Environmental Biotechnology; Arizona State University; Tempe Arizona
| | - Bruce Rittmann
- Swette Center for Environmental Biotechnology; Arizona State University; Tempe Arizona
- School of Sustainable Engineering and the Built Environment; Biodesign Institute at Arizona State University; 1001 South McAllister Avenue Tempe Arizona 85287-5701
| | - Rosa Krajmalnik-Brown
- Swette Center for Environmental Biotechnology; Arizona State University; Tempe Arizona
- School of Sustainable Engineering and the Built Environment; Biodesign Institute at Arizona State University; 1001 South McAllister Avenue Tempe Arizona 85287-5701
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Roach DR, Donovan DM. Antimicrobial bacteriophage-derived proteins and therapeutic applications. BACTERIOPHAGE 2015; 5:e1062590. [PMID: 26442196 DOI: 10.1080/21597081.2015.1062590] [Citation(s) in RCA: 136] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2015] [Revised: 06/08/2015] [Accepted: 06/11/2015] [Indexed: 02/07/2023]
Abstract
Antibiotics have the remarkable power to control bacterial infections. Unfortunately, widespread use, whether regarded as prudent or not, has favored the emergence and persistence of antibiotic resistant strains of human pathogenic bacteria, resulting in a global health threat. Bacteriophages (phages) are parasites that invade the cells of virtually all known bacteria. Phages reproduce by utilizing the host cell's machinery to replicate viral proteins and genomic material, generally damaging and killing the cell in the process. Thus, phage can be exploited therapeutically as bacteriolytic agents against bacteria. Furthermore, understanding of the molecular processes involved in the viral life cycle, particularly the entry and cell lysis steps, has led to the development of viral proteins as antibacterial agents. Here we review the current preclinical state of using phage-derived endolysins, virion-associated peptidoglycan hydrolases, polysaccharide depolymerases, and holins for the treatment of bacterial infection. The scope of this review is a focus on the viral proteins that have been assessed for protective effects against human pathogenic bacteria in animal models of infection and disease.
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Affiliation(s)
- Dwayne R Roach
- Molecular Biology of the Genes in Extremophiles; Department of Microbiology; Institute Pasteur ; Paris, France
| | - David M Donovan
- Animal Biosciences and Biotechnology Laboratory; NEA; Agricultural Research Service; US Department of Agriculture ; Beltsville, MD USA
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The marine bacteria Cobetia marina DSMZ 4741 synthesizes an unexpected K-antigen-like exopolysaccharide. Carbohydr Polym 2015; 124:347-56. [PMID: 25839829 DOI: 10.1016/j.carbpol.2015.02.038] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2014] [Revised: 02/04/2015] [Accepted: 02/19/2015] [Indexed: 01/21/2023]
Abstract
We have studied the exopolysaccharide produced by Cobetia marina DSMZ 4741, a marine bacterium isolated from coastal seawater. This strain is able to produce a polysaccharide in presence of carbon sources as glucose, mannitol and alginate. The maximum production occurs in aerobic condition, during the end of the exponential phase. The polymer is a non-viscous, acidic heteropolysaccharide of 270kDa constituted of a repeating unit of: This kind of chemical structure is generally related to K-antigen polysaccharide of pathogenic Escherichia coli strains. This is the first time this type of EPS is described from a marine bacterium. Moreover the polysaccharide exhibits a pyruvate substitution on its 3-deoxy-d-manno-oct-2-ulosonic acid (KDO) residue never encountered before. The discovery of such an unexpected EPS with high biotechnological potential is a new incentive for a better exploration of bioactive marine resources.
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41
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The Control of Microbiological Problems∗∗Some excerpts taken from Bajpai P (2012). Biotechnology for Pulp and Paper Processing with kind permission from Springer Science1Business Media. PULP AND PAPER INDUSTRY 2015. [PMCID: PMC7158184 DOI: 10.1016/b978-0-12-803409-5.00008-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Methods used to control microbiological problems are discussed. Good housekeeping and regular inspection of all areas, effective boilouts, and regularly scheduled washups reduce slime development. Conventional slime control methods generally employ combinations of biocides. Alternative control measures use enzymes, biodispersants, bacteriophages, competing organisms, and biological complex formers. Using enzymes for slime control is expected to bring important benefits to the pulp and paper industry. Enzymes represent a clean and sustainable technology: they are nontoxic, readily biodegradable, and are produced using renewable raw materials. Use of enzymes in combination with biodispersants appears to be a promising method for slime control.
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42
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Jeganathan A, Ramamoorthy S, Thillaichidambaram M. Optimization of extracellular polysaccharide production in Halobacillus trueperi AJSK using response surface methodology. ACTA ACUST UNITED AC 2014. [DOI: 10.5897/ajb2014.14109] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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43
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Shao L, Wu Z, Zhang H, Chen W, Ai L, Guo B. Partial characterization and immunostimulatory activity of exopolysaccharides from Lactobacillus rhamnosus KF5. Carbohydr Polym 2014; 107:51-6. [DOI: 10.1016/j.carbpol.2014.02.037] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2014] [Revised: 02/03/2014] [Accepted: 02/09/2014] [Indexed: 11/28/2022]
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44
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Zhang Q, Yang B, Brashears MM, Yu Z, Zhao M, Liu N, Li Y. Influence of casein hydrolysates on exopolysaccharide synthesis by Streptococcus thermophilus and Lactobacillus delbrueckii ssp. bulgaricus. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2014; 94:1366-1372. [PMID: 24114597 DOI: 10.1002/jsfa.6420] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2013] [Revised: 08/23/2013] [Accepted: 09/30/2013] [Indexed: 06/02/2023]
Abstract
BACKGROUND A lot of interesting research has been undertaken to enhance the yield of exopolysaccharides (EPS) produced by lactic acid bacteria (LAB). The objective of this study was to determine the influence of casein hydrolysates (CH) with molecular weight less than 3 kDa on cell viability, EPS synthesis and the enzyme activity involved in EPS synthesis during the co-culturing of Streptococcus thermophilus and Lactobacillus delbrueckii ssp. bulgaricus in MRS broth for 72 h at 37 ± 0.1 °C. RESULTS The highest EPS yield (150.1 mg L⁻¹) was obtained on CH prepared with papain (CHP) at 48 h. At 24 h, EPS were composed of galactose, glucose and rhamnose in a molar ratio of 1.0:2.4:1.5. The monosaccharide composition changed with extension of the fermentation time. The activities of α-phosphoglucomutase, uridine 5'-diphosphate (UDP)-glucose pyrophosphorylase and UDP-galactose 4-epimerase were associated with EPS synthesis. Moreover, the activities of β-phosphoglucomutase and deoxythymadine 5'-diphosphate (dTDP)-glucose pyrophosphorylase involved in rhamnose synthesis were very low at the exponential growth phase and could not be detected during other given periods. CONCLUSION The influence of different CH (<3 kDa) on LAB viability, EPS production, EPS monomeric composition and activity levels of key metabolic enzymes was distinct. Besides, their influence was related to the distribution of amino acids.
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Affiliation(s)
- Qingli Zhang
- College of Light Industry and Food Sciences, South China University of Technology, Guangzhou, 510640, China; Department of Animal and Food Science, Texas Tech University, Lubbock, TX, 79409, USA
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45
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Production and characterization of extracellular carbohydrate polymer from Cyanothece sp. CCY 0110. Carbohydr Polym 2013; 92:1408-15. [DOI: 10.1016/j.carbpol.2012.10.070] [Citation(s) in RCA: 72] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2012] [Revised: 10/22/2012] [Accepted: 10/28/2012] [Indexed: 11/20/2022]
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Mills S, Shanahan F, Stanton C, Hill C, Coffey A, Ross RP. Movers and shakers: influence of bacteriophages in shaping the mammalian gut microbiota. Gut Microbes 2013; 4:4-16. [PMID: 23022738 PMCID: PMC3555884 DOI: 10.4161/gmic.22371] [Citation(s) in RCA: 157] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
The human intestinal microbiota is one of the most densely populated ecosystems on Earth, containing up to 10 ( 13) bacteria/g and in some respects can be considered an organ itself given its role in human health. Bacteriophages (phages) are the most abundant replicating entities on the planet and thrive wherever their bacterial hosts exist. They undoubtedly influence the dominant microbial populations in many ecosystems including the human intestine. Within this setting, lysogeny appears to be the preferred life cycle, presumably due to nutrient limitations and lack of suitable hosts protected in biofilms, hence the predator/prey dynamic observed in many ecosystems is absent. On the other hand, free virulent phages in the gut are more common among sufferers of intestinal diseases and have been shown to increase with antibiotic usage. Many of these phages evolve from prophages of intestinal bacteria and emerge under conditions where their bacterial hosts encounter stress suggesting that prophages can significantly alter the microbial community composition. Based on these observations, we propose the "community shuffling" model which hypothesizes that prophage induction contributes to intestinal dysbiosis by altering the ratio of symbionts to pathobionts, enabling pathobiont niche reoccupation. The consequences of the increased phage load on the mammalian immune system are also addressed. While this is an area of intestinal biology which has received little attention, this review assembles evidence from the literature which supports the role of phages as one of the biological drivers behind the composition of the gut microbiota.
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Affiliation(s)
- Susan Mills
- Teagasc Food Research Centre; Moorepark; Fermoy, County Cork, Ireland
| | - Fergus Shanahan
- Alimentary Pharmabiotic Centre; University College Cork; National University of Ireland; Cork, Ireland,Department of Medicine; University College Cork; National University of Ireland; Cork, Ireland
| | - Catherine Stanton
- Teagasc Food Research Centre; Moorepark; Fermoy, County Cork, Ireland,Alimentary Pharmabiotic Centre; University College Cork; National University of Ireland; Cork, Ireland
| | - Colin Hill
- Alimentary Pharmabiotic Centre; University College Cork; National University of Ireland; Cork, Ireland,Department of Microbiology; University College Cork; National University of Ireland; Cork, Ireland
| | - Aidan Coffey
- Department of Biological Sciences; Cork Institute of Technology; Bishopstown, Cork, Ireland
| | - R. Paul Ross
- Teagasc Food Research Centre; Moorepark; Fermoy, County Cork, Ireland,Alimentary Pharmabiotic Centre; University College Cork; National University of Ireland; Cork, Ireland,Correspondence to: R. Paul Ross,
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47
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Raza W, Yang W, Jun Y, Shakoor F, Huang Q, Shen Q. Optimization and characterization of a polysaccharide produced by Pseudomonas fluorescens WR-1 and its antioxidant activity. Carbohydr Polym 2012; 90:921-9. [DOI: 10.1016/j.carbpol.2012.06.021] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2012] [Revised: 05/17/2012] [Accepted: 06/10/2012] [Indexed: 11/16/2022]
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İnal M, Yiğitoğlu M. Improvement of bioethanol productivity of immobilized Saccharomyces bayanus with using sodium alginate-graft-poly(N-vinyl-2-pyrrolidone) matrix. Appl Biochem Biotechnol 2012; 168:266-78. [PMID: 22717770 DOI: 10.1007/s12010-012-9770-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2012] [Accepted: 06/05/2012] [Indexed: 11/26/2022]
Abstract
In this study, immobilization conditions and bioethanol production characteristics of immobilized Saccharomyces bayanus were investigated into sodium alginate-graft-poly(N-vinyl-2-pyrrolidone; NaAlg-g-PVP) matrix. The matrix that crosslinked with calcium clorid was used for immobilization of S. bayanus. Bioethanol productivity of the NaAlg-g-PVP matrix was found to increase from 4.21 to 4.84 gL(-1) h(-1) when compared with the convential sodium alginate matrix. The production of bioethanol was affected by initial glucose concentration and percentage of immobilized cell beads in fermentation medium. Bioethanol productivity was increased from 3.62 to 4.84 gL(-1) h(-1) while the glucose concentration increasing from 50 to 100 gL(-1). Due to the increase in percentage from 10 to 20 % of immobilized cell beads in the fermentation medium, bioethanol productivity was increased from 4.84 to 8.68 gL(-1) h(-1). The cell immobilized NaAlg-g-PVP beads were protected 92 % of initial activity after six repeated fermentation.
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Affiliation(s)
- Murat İnal
- Science and Art Faculty, Department of Chemistry, Kirikkale University, Yahşihan 71450 Kirikkale, Turkey.
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Patel S, Majumder A, Goyal A. Potentials of exopolysaccharides from lactic Acid bacteria. Indian J Microbiol 2012; 52:3-12. [PMID: 23449986 PMCID: PMC3298600 DOI: 10.1007/s12088-011-0148-8] [Citation(s) in RCA: 149] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2009] [Accepted: 11/04/2009] [Indexed: 10/18/2022] Open
Abstract
Recent research in the area of importance of microbes has revealed the immense industrial potential of exopolysaccharides and their derivative oligosaccharides from lactic acid bacteria. However, due to lack of adequate technological knowledge, the exopolysaccharides have remained largely under exploited. In the present review, the enormous potentials of different types of exopolysaccharides from lactic acid bacteria are described. This also summarizes the recent advances in the applications of exopolysaccharides, certain problems associated with their commercial production and the remedies.
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Affiliation(s)
- Seema Patel
- Department of Biotechnology, Indian Institute of Technology Guwahati, Guwahati, 781 039 Assam India
| | - Avishek Majumder
- Department of System Biology, Technical University of Denmark, Building 224, DK-2800 Kgs., Lyngby, Denmark
| | - Arun Goyal
- Department of Biotechnology, Indian Institute of Technology Guwahati, Guwahati, 781 039 Assam India
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Rigouin C, Delbarre-Ladrat C, Ratiskol J, Sinquin C, Colliec-Jouault S, Dion M. Screening of enzymatic activities for the depolymerisation of the marine bacterial exopolysaccharide HE800. Appl Microbiol Biotechnol 2012; 96:143-51. [DOI: 10.1007/s00253-011-3822-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2011] [Revised: 12/01/2011] [Accepted: 12/05/2011] [Indexed: 12/19/2022]
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