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Prokop P. Urban environment decreases pollinator availability, fertility, and prolongs anthesis in the field bindweed ( Convolvulus arvensis Linnaeus, 1753). PLANT SIGNALING & BEHAVIOR 2024; 19:2325225. [PMID: 38448395 PMCID: PMC10936644 DOI: 10.1080/15592324.2024.2325225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 12/23/2023] [Indexed: 03/08/2024]
Abstract
Urbanization alters the natural environment, with broad negative impacts on living organisms. Urbanization can also disrupt plant-pollinator networks by reducing the abundance and diversity of invertebrates. Firstly, I investigated whether the field bindweed (Convolvulus arvensis) is an obligatory entomophilous plant because previous reports were ambiguous. Secondly, I investigated how the obligatory entomophilous plant, field bindweed, responds to urbanization by comparing the flowering duration (anthesis) and the reproductive success of field bindweeds in urban and rural populations. Unlike cross-pollinated flowers and controls, flowers experimentally prevented from pollination and self-pollinated flowers did not produce seeds, suggesting that the field bindweed is self-incompatible and obligatory entomophilous. The abundance of urban pollinators was 5-6 times lower than the abundance of rural pollinators, and flies (Diptera), beetles (Coleoptera) and moths (Lepidoptera) were significantly more negatively influenced by the urban environment than hymenopterans (Hymenoptera). Urban plants showed significantly longer anthesis duration and lower reproductive success than rural plants. Illuminance and low pollinator abundance were negatively associated with the duration of the anthesis, but relative humidity did not affect the anthesis. Prolonged duration of the anthesis may be an adaptation to pollinator scarcity because more prolonged flowering increases the likelihood of pollination. Future research should unravel whether the longer anthesis of urban flowers is determined by behavioral plasticity or by the evolutionary selection of plants with a genetically determined longer anthesis.
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Affiliation(s)
- Pavol Prokop
- Department of Environmental Ecology and Landscape Management, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakia
- Institute of Zoology, Slovak Academy of Sciences, Bratislava, Slovakia
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2
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Mmbando GS. The link between changing in host carbon allocation and resistance to Magnaporthe oryzae: a possible tactic for mitigating the rice blast fungus. PLANT SIGNALING & BEHAVIOR 2024; 19:2326870. [PMID: 38465846 PMCID: PMC10936674 DOI: 10.1080/15592324.2024.2326870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 02/29/2024] [Indexed: 03/12/2024]
Abstract
One of the most destructive diseases affecting rice is rice blast, which is brought on by the rice blast fungus Magnaporthe oryzae. The preventive measures, however, are not well established. To effectively reduce the negative effects of rice blasts on crop yields, it is imperative to comprehend the dynamic interactions between pathogen resistance and patterns of host carbon allocation. This review explores the relationship between variations in carbon allocation and rice plants' ability to withstand the damaging effects of M. oryzae. The review highlights potential strategies for altering host carbon allocation including transgenic, selective breeding, crop rotation, and nutrient management practices as a promising avenue for enhancing rice blast resistance. This study advances our knowledge of the interaction between plants' carbon allocation and M. oryzae resistance and provides stakeholders and farmers with practical guidance on mitigating the adverse effects of the rice blast globally. This information may be used in the future to create varieties that are resistant to M. oryzae.
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Affiliation(s)
- Gideon Sadikiel Mmbando
- Department of Biology, College of Natural and Mathematical Sciences, University of Dodoma, Dodoma, Tanzania
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3
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Kessler A, Mueller MB. Induced resistance to herbivory and the intelligent plant. PLANT SIGNALING & BEHAVIOR 2024; 19:2345985. [PMID: 38687704 PMCID: PMC11062368 DOI: 10.1080/15592324.2024.2345985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 04/17/2024] [Indexed: 05/02/2024]
Abstract
Plant induced responses to environmental stressors are increasingly studied in a behavioral ecology context. This is particularly true for plant induced responses to herbivory that mediate direct and indirect defenses, and tolerance. These seemingly adaptive alterations of plant defense phenotypes in the context of other environmental conditions have led to the discussion of such responses as intelligent behavior. Here we consider the concept of plant intelligence and some of its predictions for chemical information transfer in plant interaction with other organisms. Within this framework, the flow, perception, integration, and storage of environmental information are considered tunable dials that allow plants to respond adaptively to attacking herbivores while integrating past experiences and environmental cues that are predictive of future conditions. The predictive value of environmental information and the costs of acting on false information are important drivers of the evolution of plant responses to herbivory. We identify integrative priming of defense responses as a mechanism that allows plants to mitigate potential costs associated with acting on false information. The priming mechanisms provide short- and long-term memory that facilitates the integration of environmental cues without imposing significant costs. Finally, we discuss the ecological and evolutionary prediction of the plant intelligence hypothesis.
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Affiliation(s)
- André Kessler
- Cornell University, Department of Ecology and Evolutionary Biology, Ithaca, NY, USA
| | - Michael B. Mueller
- Cornell University, Department of Ecology and Evolutionary Biology, Ithaca, NY, USA
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4
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Marder M, Geremia Parise A. Extending cognition: a vegetal rejoinder to extensionless thought and to extended cognition. PLANT SIGNALING & BEHAVIOR 2024; 19:2345984. [PMID: 38654490 PMCID: PMC11057674 DOI: 10.1080/15592324.2024.2345984] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 04/17/2024] [Indexed: 04/26/2024]
Abstract
In this paper, we propose a crucial supplement to the framework of plant cognition, namely extending cognition. We argue that plants and other organisms with an open-ended body plan actively extend their cognition when growing tissues or organs. Their cognition expands with their body expansion. After considering the defining features of extending cognition, we present a model where growth, along with aspects of plant physiology (e.g. biochemical exudates), as well as the "negative extension" of growing away from obstacles or stressful environments, are the building blocks for a more refined understanding of plant cognition. We conclude by outlining the general implications of the theory of extending cognition and indicating directions for future research.
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Affiliation(s)
- Michael Marder
- Department of Philosophy, University of the Basque Country, UPV-EHU, Vitoria-Gasteiz, Spain
- Philosophy, Ikerbasque: Basque Foundation for Science, Vitoria, Spain
| | - André Geremia Parise
- School of Biological Sciences, University of Reading, Reading, UK
- School of Agriculture, Policy and Development, University of Reading, Reading, UK
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5
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Minorsky PV. The "plant neurobiology" revolution. PLANT SIGNALING & BEHAVIOR 2024; 19:2345413. [PMID: 38709727 PMCID: PMC11085955 DOI: 10.1080/15592324.2024.2345413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 04/10/2024] [Indexed: 05/08/2024]
Abstract
The 21st-century "plant neurobiology" movement is an amalgam of scholars interested in how "neural processes", broadly defined, lead to changes in plant behavior. Integral to the movement (now called plant behavioral biology) is a triad of historically marginalized subdisciplines, namely plant ethology, whole plant electrophysiology and plant comparative psychology, that set plant neurobiology apart from the mainstream. A central tenet held by these "triad disciplines" is that plants are exquisitely sensitive to environmental perturbations and that destructive experimental manipulations rapidly and profoundly affect plant function. Since destructive measurements have been the norm in plant physiology, much of our "textbook knowledge" concerning plant physiology is unrelated to normal plant function. As such, scientists in the triad disciplines favor a more natural and holistic approach toward understanding plant function. By examining the history, philosophy, sociology and psychology of the triad disciplines, this paper refutes in eight ways the criticism that plant neurobiology presents nothing new, and that the topics of plant neurobiology fall squarely under the purview of mainstream plant physiology. It is argued that although the triad disciplines and mainstream plant physiology share the common goal of understanding plant function, they are distinct in having their own intellectual histories and epistemologies.
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Affiliation(s)
- Peter V. Minorsky
- Department of Natural Sciences, Mercy University, Dobbs Ferry, NY, USA
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6
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Hidvégi N, Dobránszki J, Tóth B, Gulyás A. Expression responses of XTH genes in tomato and potato to environmental mechanical forces: focus on behavior in response to rainfall, wind and touch. PLANT SIGNALING & BEHAVIOR 2024; 19:2360296. [PMID: 38808631 PMCID: PMC11141476 DOI: 10.1080/15592324.2024.2360296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Accepted: 05/22/2024] [Indexed: 05/30/2024]
Abstract
Rainfall, wind and touch, as mechanical forces, were mimicked on 6-week-old soil-grown tomato and potato under controlled conditions. Expression level changes of xyloglucan endotransglucosylase/hydrolase genes (XTHs) of tomato (Solanum lycopersicum L. cv. Micro Tom; SlXTHs) and potato (Solanum tuberosum L. cv. Desirée; StXTHs) were analyzed in response to these mechanical forces. Transcription intensity of every SlXTHs of tomato was altered in response to rainfall, while the expression intensity of 72% and 64% of SlXTHs was modified by wind and touch, respectively. Ninety-one percent of StXTHs (32 out of 35) in potato responded to the rainfall, while 49% and 66% of the StXTHs were responsive to the wind and touch treatments, respectively. As previously demonstrated, all StXTHs were responsive to ultrasound treatment, and all were sensitive to one or more of the environmental mechanical factors examined in the current study. To our best knowledge, this is the first study to demonstrate that these ubiquitous mechanical environmental cues, such as rainfall, wind and touch, influence the transcription of most XTHs examined in both species.
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Affiliation(s)
- Norbert Hidvégi
- Centre for Agricultural Genomics and Biotechnology, Faculty of the Agricultural and Food Science and Environmental Management, University of Debrecen, Nyíregyháza, Hungary
| | - Judit Dobránszki
- Centre for Agricultural Genomics and Biotechnology, Faculty of the Agricultural and Food Science and Environmental Management, University of Debrecen, Nyíregyháza, Hungary
| | - Bianka Tóth
- Centre for Agricultural Genomics and Biotechnology, Faculty of the Agricultural and Food Science and Environmental Management, University of Debrecen, Nyíregyháza, Hungary
| | - Andrea Gulyás
- Centre for Agricultural Genomics and Biotechnology, Faculty of the Agricultural and Food Science and Environmental Management, University of Debrecen, Nyíregyháza, Hungary
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7
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Wang S, Wang C, Zhang J, Jiang K, Nian F. Allelopathy and potential allelochemicals of Ligularia sagitta as an invasive plant. PLANT SIGNALING & BEHAVIOR 2024; 19:2335025. [PMID: 38678583 PMCID: PMC11057658 DOI: 10.1080/15592324.2024.2335025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 03/20/2024] [Indexed: 05/01/2024]
Abstract
Allelopathy is the main chemical means in the invasion process of exotic plants and one of the key factors in grassland degradation. In this experiment, we investigated the effects of ethyl acetate phase extract (EAE), n-butanol phase extract (BE) and aqueous phase extract (AE) from the aboveground (stems and leaves) and roots of Ligularia sagitta on seed germination and seedling growth of four Gramineae forages (Poa pratensis L. Festuca ovina L. Elymus nutans Griseb. Agropyron cristatum (L.) Gaertn.) in their sympatric domains and one Legosuminae forage (Medicago sativa L.). The chemical components in each phase extract of L. sagitta were determined with UHPLC-MS/MS non-targeted metabolomics, and the differential compounds were screened using Orthogonal Partial Least Squares-Discriminant Analysis (OPLS-DA). Within a set concentration range, EAE significantly inhibited seed germination and seedling growth of four Gramineae forages. BE and AE acted mainly in the seedling growth stage and did not significantly inhibit forage seed germination. P. pratensis was most sensitive to L. sagitta extracts; at 2.0 mg/mL of EAE from roots, germination energy and germination rate of P. pratensis seeds were 0. L. sagitta extracts inhibited the growth of M. sativa seedlings and did not inhibit its seed germination. A total of 904 compounds were identified with UHPLC-MS/MS, among which 31, 64, 81 and 66 metabolites displayed different accumulation patterns in the four comparison groups (R.EAE vs. R.BE, R.EAE vs. R.AE, SL.EAE vs. SL.BE, SL.EAE vs. SL.AE), respectively. In particular, 9 compounds were found to be common up-regulated differential metabolites in the four comparison groups and were enriched in EAE. Additionally, N,N-dimethylaniline, Caffeic acid, 4-Hydroxybenzoic acid, 4-Hydroxybenzaldehyde and cis-9-Octadecenoic acid as potential allelochemicals in L. sagitta. The results of this study support efforts at finding alternative control plants for the restoration of poisonous grass-type degraded grasslands.
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Affiliation(s)
- Shengxiao Wang
- College of Science, Gansu Agricultural University, Lanzhou, China
| | - Chenyue Wang
- College of Agronomy, Gansu Agricultural University, Lanzhou, China
| | - Jun Zhang
- College of Agronomy, Gansu Agricultural University, Lanzhou, China
| | - Kan Jiang
- College of Agronomy, Gansu Agricultural University, Lanzhou, China
| | - Fang Nian
- College of Science, Gansu Agricultural University, Lanzhou, China
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8
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Liao H, Lyon CJ, Ying B, Hu T. Climate change, its impact on emerging infectious diseases and new technologies to combat the challenge. Emerg Microbes Infect 2024; 13:2356143. [PMID: 38767202 PMCID: PMC11138229 DOI: 10.1080/22221751.2024.2356143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Accepted: 05/10/2024] [Indexed: 05/22/2024]
Abstract
ABSTRACTImproved sanitation, increased access to health care, and advances in preventive and clinical medicine have reduced the mortality and morbidity rates of several infectious diseases. However, recent outbreaks of several emerging infectious diseases (EIDs) have caused substantial mortality and morbidity, and the frequency of these outbreaks is likely to increase due to pathogen, environmental, and population effects driven by climate change. Extreme or persistent changes in temperature, precipitation, humidity, and air pollution associated with climate change can, for example, expand the size of EID reservoirs, increase host-pathogen and cross-species host contacts to promote transmission or spillover events, and degrade the overall health of susceptible host populations leading to new EID outbreaks. It is therefore vital to establish global strategies to track and model potential responses of candidate EIDs to project their future behaviour and guide research efforts on early detection and diagnosis technologies and vaccine development efforts for these targets. Multi-disciplinary collaborations are demanding to develop effective inter-continental surveillance and modelling platforms that employ artificial intelligence to mitigate climate change effects on EID outbreaks. In this review, we discuss how climate change has increased the risk of EIDs and describe novel approaches to improve surveillance of emerging pathogens that pose the risk for EID outbreaks, new and existing measures that could be used to contain or reduce the risk of future EID outbreaks, and new methods to improve EID tracking during further outbreaks to limit disease transmission.
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Affiliation(s)
- Hongyan Liao
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, People’s Republic of China
- Center for Cellular and Molecular Diagnostics and Department of Biochemistry and Molecular Biology, Tulane University School of Medicine, New Orleans, LA, United States
| | - Christopher J. Lyon
- Center for Cellular and Molecular Diagnostics and Department of Biochemistry and Molecular Biology, Tulane University School of Medicine, New Orleans, LA, United States
| | - Binwu Ying
- Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu, People’s Republic of China
| | - Tony Hu
- Center for Cellular and Molecular Diagnostics and Department of Biochemistry and Molecular Biology, Tulane University School of Medicine, New Orleans, LA, United States
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9
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Liu Z, Guo Z, Zhou J, Guo X, Chen Y. Biotic interactions and environmental modifications determine symbiotic microbial diversity and stability. Comput Struct Biotechnol J 2024; 23:2717-2726. [PMID: 39040687 PMCID: PMC11260581 DOI: 10.1016/j.csbj.2024.05.047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2023] [Revised: 05/09/2024] [Accepted: 05/28/2024] [Indexed: 07/24/2024] Open
Abstract
Taking amphibians as island models, we examined the effects of interspecific interaction on the diversity and stability of microbial ecological. As skin area increased, the diversity and stability of skin microbes decreased, but the strength of negative interactions increased significantly. In contrast, as gut area increased, the diversity and stability of gut microbes increased, but the strength of interactions remained constant. These results indicate that microbial interactions are affected by habitat properties. When living in fluctuating environments without strong filtering, microorganisms can enhance their negative interactions with other taxa by changing the pH of their surroundings. In contrast, the pH of the gut is relatively stable, and colonized microorganisms cannot alter the gut pH and inhibit other colonizers. This study demonstrates that in the field of microbiology, diversity and stability are predominantly influenced by the intensity of interspecies interactions. The findings in this study deepen our understanding of microbial diversity and stability and provide a mechanistic link between species interactions, biodiversity, and stability in microbial ecosystems.
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Affiliation(s)
- Zhidong Liu
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zeguang Guo
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jin Zhou
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xuecheng Guo
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Youhua Chen
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
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10
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Van Le V, Kang M, Ko SR, Park CY, Lee JJ, Choi IC, Oh HM, Ahn CY. Response of particle-attached and free-living bacterial communities to Microcystis blooms. Appl Microbiol Biotechnol 2024; 108:42. [PMID: 38183480 DOI: 10.1007/s00253-023-12828-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 07/29/2023] [Accepted: 11/13/2023] [Indexed: 01/08/2024]
Abstract
The massive proliferation of Microcystis threatens freshwater ecosystems and degrades water quality globally. Understanding the mechanisms that contribute to Microcystis growth is crucial for managing Microcystis blooms. The lifestyles of bacteria can be classified generally into two groups: particle-attached (PA; > 3 µm) and free-living (FL; 0.2-3.0 µm). However, little is known about the response of PA and FL bacteria to Microcystis blooms. Using 16S rRNA gene high-throughput sequencing, we investigated the stability, assembly process, and co-occurrence patterns of PA and FL bacterial communities during distinct bloom stages. PA bacteria were phylogenetically different from their FL counterparts. Microcystis blooms substantially influenced bacterial communities. The time decay relationship model revealed that Microcystis blooms might increase the stability of both PA and FL bacterial communities. A contrasting community assembly mechanism was observed between the PA and FL bacterial communities. Throughout Microcystis blooms, homogeneous selection was the major assembly process that impacted the PA bacterial community, whereas drift explained much of the turnover of the FL bacterial community. Both PA and FL bacterial communities could be separated into modules related to different phases of Microcystis blooms. Microcystis blooms altered the assembly process of PA and FL bacterial communities. PA bacterial community appeared to be more responsive to Microcystis blooms than FL bacteria. Decomposition of Microcystis blooms may enhance cooperation among bacteria. Our findings highlight the importance of studying bacterial lifestyles to understand their functions in regulating Microcystis blooms. KEY POINTS: • Microcystis blooms alter the assembly process of PA and FL bacterial communities • Microcystis blooms increase the stability of both PA and FL bacterial communities • PA bacteria seem to be more responsive to Microcystis blooms than FL bacteria.
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Affiliation(s)
- Ve Van Le
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-Ro, Yuseong-Gu, Daejeon, 34141, Republic of Korea
- Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology, Daejeon, 34113, Republic of Korea
| | - Mingyeong Kang
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-Ro, Yuseong-Gu, Daejeon, 34141, Republic of Korea
- Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology, Daejeon, 34113, Republic of Korea
| | - So-Ra Ko
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-Ro, Yuseong-Gu, Daejeon, 34141, Republic of Korea
| | - Chan-Yeong Park
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-Ro, Yuseong-Gu, Daejeon, 34141, Republic of Korea
- Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology, Daejeon, 34113, Republic of Korea
| | - Jay Jung Lee
- Geum River Environment Research Center, National Institute of Environmental Research, Chungbuk, 29027, Republic of Korea
| | - In-Chan Choi
- Geum River Environment Research Center, National Institute of Environmental Research, Chungbuk, 29027, Republic of Korea
| | - Hee-Mock Oh
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-Ro, Yuseong-Gu, Daejeon, 34141, Republic of Korea
- Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology, Daejeon, 34113, Republic of Korea
| | - Chi-Yong Ahn
- Cell Factory Research Centre, Korea Research Institute of Bioscience & Biotechnology, 125 Gwahak-Ro, Yuseong-Gu, Daejeon, 34141, Republic of Korea.
- Department of Environmental Biotechnology, KRIBB School of Biotechnology, University of Science and Technology, Daejeon, 34113, Republic of Korea.
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11
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Jeremias G, Muñiz-González AB, Mendes Gonçalves FJ, Martínez-Guitarte JL, Asselman J, Luísa Pereira J. History of exposure to copper influences transgenerational gene expression responses in Daphnia magna. Epigenetics 2024; 19:2296275. [PMID: 38154067 PMCID: PMC10761054 DOI: 10.1080/15592294.2023.2296275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 12/13/2023] [Indexed: 12/30/2023] Open
Abstract
The establishment of transgenerational effects following chemical exposure is a powerful phenomenon, capable of modulating ecosystem health beyond exposure periods. This study assessed the transgenerational effects occurring due to copper exposure in the invertebrate D. magna at the transcriptional level, while evaluating the role of exposure history on such responses. Thus, daphnids acclimated for several generations in a copper vs. clean medium were then exposed for one generation (F0) to this metal, and monitored for the following non-exposed generations (F1, F2 and F3). Organisms differing in exposure histories showed remarkably different transcriptional profiles at the F0, with naïve organisms being more profoundly affected. These trends were confirmed for F3 treatments, which presented different transcriptional patterns for genes involved in detoxification, oxidative stress, DNA damage repair, circadian clock functioning and epigenetic regulation. Furthermore, regardless of exposure history, a great number of histone modifier genes were always found transcriptionally altered, thus suggesting the involvement of histone modifications in the response of Daphnia to metal exposure. Lastly, remarkably distinct transgenerational transcriptional responses were found between naïve and non-naïve organisms, thereby highlighting the influence of exposure history on gene expression and confirming the capacity of metals to determine transgenerational transcriptional effects across non-exposed generations.
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Affiliation(s)
- Guilherme Jeremias
- CESAM - Centre for Environmental and Marine Studies & Department of Biology, University of Aveiro, Aveiro, Portugal
| | - Ana-Belén Muñiz-González
- CESAM - Centre for Environmental and Marine Studies & Department of Biology, University of Aveiro, Aveiro, Portugal
- Biology & Toxicology Group, Department of Mathematics, Physics, and Fluids, National Distance Education University (UNED), Madrid, Spain
| | | | - José-Luis Martínez-Guitarte
- Biology & Toxicology Group, Department of Mathematics, Physics, and Fluids, National Distance Education University (UNED), Madrid, Spain
| | - Jana Asselman
- Blue Growth Research Lab, Ghent University, Ostend, Belgium
| | - Joana Luísa Pereira
- CESAM - Centre for Environmental and Marine Studies & Department of Biology, University of Aveiro, Aveiro, Portugal
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12
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Barchi A, Massimino L, Mandarino FV, Vespa E, Sinagra E, Almolla O, Passaretti S, Fasulo E, Parigi TL, Cagliani S, Spanò S, Ungaro F, Danese S. Microbiota profiling in esophageal diseases: Novel insights into molecular staining and clinical outcomes. Comput Struct Biotechnol J 2024; 23:626-637. [PMID: 38274997 PMCID: PMC10808859 DOI: 10.1016/j.csbj.2023.12.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Revised: 12/22/2023] [Accepted: 12/23/2023] [Indexed: 01/27/2024] Open
Abstract
Gut microbiota is recognized nowadays as one of the key players in the development of several gastro-intestinal diseases. The first studies focused mainly on healthy subjects with staining of main bacterial species via culture-based techniques. Subsequently, lots of studies tried to focus on principal esophageal disease enlarged the knowledge on esophageal microbial environment and its role in pathogenesis. Gastro Esophageal Reflux Disease (GERD), the most widespread esophageal condition, seems related to a certain degree of mucosal inflammation, via interleukin (IL) 8 potentially enhanced by bacterial components, lipopolysaccharide (LPS) above all. Gram- bacteria, producing LPS), such as Campylobacter genus, have been found associated with GERD. Barrett esophagus (BE) seems characterized by a Gram- and microaerophils-shaped microbiota. Esophageal cancer (EC) development leads to an overturn in the esophageal environment with the shift from an oral-like microbiome to a prevalently low-abundant and low-diverse Gram--shaped microbiome. Although underinvestigated, also changes in the esophageal microbiome are associated with rare chronic inflammatory or neuropathic disease pathogenesis. The paucity of knowledge about the microbiota-driven mechanisms in esophageal disease pathogenesis is mainly due to the scarce sensitivity of sequencing technology and culture methods applied so far to study commensals in the esophagus. However, the recent advances in molecular techniques, especially with the advent of non-culture-based genomic sequencing tools and the implementation of multi-omics approaches, have revolutionized the microbiome field, with promises of implementing the current knowledge, discovering more mechanisms underneath, and giving insights into the development of novel therapies aimed to re-establish the microbial equilibrium for ameliorating esophageal diseases..
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Affiliation(s)
- Alberto Barchi
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Luca Massimino
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
| | | | - Edoardo Vespa
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Emanuele Sinagra
- Gastroenterology & Endoscopy Unit, Fondazione Istituto G. Giglio, Cefalù, Italy
| | - Omar Almolla
- Università Vita-Salute San Raffaele, Faculty of Medicine, Milan, Italy
| | - Sandro Passaretti
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Ernesto Fasulo
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Tommaso Lorenzo Parigi
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
- Università Vita-Salute San Raffaele, Faculty of Medicine, Milan, Italy
| | - Stefania Cagliani
- Università Vita-Salute San Raffaele, Faculty of Medicine, Milan, Italy
| | - Salvatore Spanò
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Federica Ungaro
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
| | - Silvio Danese
- Gastroenterology and Digestive Endoscopy, IRCCS Ospedale San Raffaele, Milan, Italy
- Università Vita-Salute San Raffaele, Faculty of Medicine, Milan, Italy
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13
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Chen M, Yang J, Xue C, Tu T, Su Z, Feng H, Shi M, Zeng G, Zhang D, Qian X. Community composition of phytopathogenic fungi significantly influences ectomycorrhizal fungal communities during subtropical forest succession. Appl Microbiol Biotechnol 2024; 108:99. [PMID: 38204135 PMCID: PMC10781812 DOI: 10.1007/s00253-023-12992-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 11/21/2023] [Accepted: 12/28/2023] [Indexed: 01/12/2024]
Abstract
Ectomycorrhizal fungi (EMF) can form symbiotic relationships with plants, aiding in plant growth by providing access to nutrients and defense against phytopathogenic fungi. In this context, factors such as plant assemblages and soil properties can impact the interaction between EMF and phytopathogenic fungi in forest soil. However, there is little understanding of how these fungal interactions evolve as forests move through succession stages. In this study, we used high-throughput sequencing to investigate fungal communities in young, intermediate, and old subtropical forests. At the genus level, EMF communities were dominated by Sebacina, Russula, and Lactarius, while Mycena was the most abundant genus in pathogenic fungal communities. The relative abundances of EMF and phytopathogenic fungi in different stages showed no significant difference with the regulation of different factors. We discovered that interactions between phytopathogenic fungi and EMF maintained a dynamic balance under the influence of the differences in soil quality attributed to each forest successional stage. The community composition of phytopathogenic fungi is one of the strong drivers in shaping EMF communities over successions. In addition, the EMF diversity was significantly related to plant diversity, and these relationships varied among successional stages. Despite the regulation of various factors, the positive relationship between the diversity of phytopathogenic fungi and EMF remained unchanged. However, there is no significant difference in the ratio of the abundance of EMF and phytopathogenic fungi over the course of successions. These results will advance our understanding of the biodiversity-ecosystem functioning during forest succession. KEY POINTS: •Community composition of both EMF and phytopathogenic fungi changed significantly over forest succession. •Phytopathogenic fungi is a key driver in shaping EMF community. •The effect of plant Shannon's diversity on EMF communities changed during the forest aging process.
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Affiliation(s)
- Meirong Chen
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jiazhi Yang
- Guangdong Forestry Survey and Planning Institute, Guangzhou, China
| | - Chunquan Xue
- Guangdong Forestry Survey and Planning Institute, Guangzhou, China.
| | - Tieyao Tu
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Zhiyao Su
- South China Agriculture University, Guangzhou, China
| | - Hanhua Feng
- Guangdong Forestry Survey and Planning Institute, Guangzhou, China
| | - Miaomiao Shi
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China
| | - Gui Zeng
- College of Life Sciences, China West Normal University, Nanchong, China
| | - Dianxiang Zhang
- Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
| | - Xin Qian
- College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.
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14
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Zhou J, Liu J, Wang D, Ruan Y, Gong S, Gou J, Zou X. Fungal communities are more sensitive to mildew than bacterial communities during tobacco storage processes. Appl Microbiol Biotechnol 2024; 108:88. [PMID: 38194134 DOI: 10.1007/s00253-023-12882-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 12/09/2023] [Accepted: 12/14/2023] [Indexed: 01/10/2024]
Abstract
Mildew poses a significant threat to tobacco production; however, there is limited information on the structure of the abundant and rare microbial subcommunities in moldy tobacco leaves. In this study, we employed high-throughput sequencing technology to discern the disparities in the composition, diversity, and co-occurrence patterns of abundant and rare fungal and bacterial subcommunities between moldy and normal tobacco leaves collected from Guizhou, Shanghai, and Jilin provinces, China. Furthermore, we explored the correlation between microorganisms and metabolites by integrating the metabolic profiles of moldy and normal tobacco leaves. The results showed that the fungi are more sensitive to mildew than bacteria, and that the fungal abundant taxa exhibit greater resistance and environmental adaptability than the rare taxa. The loss of rare taxa results in irreversible changes in the diversity, richness, and composition of the fungal community. Moreover, rare fungal taxa and abundant bacterial taxa played crucial roles in maintaining the stability and functionality of the tobacco microecosystem. In moldy tobacco, however, the disappearance of rare taxa as key nodes resulted in reduced connectivity and stability within the fungal network. In addition, metabolomic analysis showed that the contents of indoles, pyridines, polyketones, phenols, and peptides were significantly enriched in the moldy tobacco leaves, while the contents of amino acids, carbohydrates, lipids, and other compounds were significantly reduced in these leaves. Most metabolites showed negative correlations with Dothideomycetes, Alphaproteobacteria, and Gammaproteobacteria, but showed positive correlations with Eurotiales and Bacilli. This study has demonstrated that abundant fungal taxa are the predominant biological agents responsible for tobacco mildew, while bacteria may indirectly contribute to this process through the production and degradation of metabolites. KEY POINTS: • Fungi exhibited greater sensitivity to mildew of tobacco leaf compared to bacteria • Rare fungal taxa underwent significant damage during the mildew process • Mildew may damage the defense system of the tobacco leaf microecosystem.
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Affiliation(s)
- Jiaxi Zhou
- Department of Ecology / Institute of Fungus Resources, College of Life Sciences, Guizhou University, Guiyang, China
- Postdoctoral Research Workstation of China Tobacco Guizhou Industrial Co. Ltd, Guiyang, China
- China Tobacco Guizhou Industrial Co. Ltd, Guiyang, China
| | - Jing Liu
- Guizhou Tobacco Company Zunyi Branch, Zunyi, China
| | - Dongfei Wang
- China Tobacco Guizhou Industrial Co. Ltd, Guiyang, China
| | - Yibin Ruan
- China Tobacco Guizhou Industrial Co. Ltd, Guiyang, China
| | - Shuang Gong
- China Tobacco Guizhou Industrial Co. Ltd, Guiyang, China
| | - Jianyu Gou
- Guizhou Tobacco Company Zunyi Branch, Zunyi, China
| | - Xiao Zou
- Department of Ecology / Institute of Fungus Resources, College of Life Sciences, Guizhou University, Guiyang, China.
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15
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Sundar Panja A. The systematic codon usage bias has an important effect on genetic adaption in native species. Gene 2024; 926:148627. [PMID: 38823656 DOI: 10.1016/j.gene.2024.148627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 05/06/2024] [Accepted: 05/29/2024] [Indexed: 06/03/2024]
Abstract
Random mutations increase genetic variety and natural selection enhances adaption over generations. Codon usage biases (CUB) provide clues about the genome adaptation mechanisms of native species and extremophile species. Significant numbers of gene (CDS) of nine classes of endangered, native species, including extremophiles and mesophiles were utilised to compute CUB. Codon usage patterns differ among the lineages of endangered and extremophiles with native species. Polymorphic usage of nucleotides with codon burial suggests parallelism of native species within relatively confined taxonomic groups. Utilizing the deviation pattern of CUB of endangered and native species, I present a calculation parameter to estimate the extinction risk of endangered species. Species diversity and extinction risk are both positively associated with the propensity of random mutation in CDS (Coding DNA sequence). Codon bias tenet profoundly selected and it governs to adaptive evolution of native species.
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Affiliation(s)
- Anindya Sundar Panja
- Department of Biotechnology, Molecular Informatics Laboratory, Oriental Institute of Science and Technology, Vidyasagar University, Midnapore, West Bengal 721102, India.
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16
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Li S, Gao G, Wang C, Li Z, Feng X, Fu B. Aridity regulates the impacts of multiple dimensional plant diversity on soil properties in the drylands of northern China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174211. [PMID: 38914324 DOI: 10.1016/j.scitotenv.2024.174211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 05/25/2024] [Accepted: 06/21/2024] [Indexed: 06/26/2024]
Abstract
Relationships between plant diversity and soil properties are important for restoring ecosystem function to adapt climate change in drylands. Taxonomic, functional and phylogenetic diversity are widely used for understanding community assembly and the responses of plant communities to environmental change. However, one dimension of diversity index is difficult to reflect the multiple dimensional plant diversity, and their effects on soil properties (i.e., moisture, nutrients, and texture characteristics) along aridity gradient in drylands are limitedly understood. In this study, we proposed a holistic biodiversity (HB) index to integrate all the characteristics of plant diversity, and investigated the relationships between plant diversity and soil properties across 41 sites along aridity gradient (from hyperarid to arid and semiarid levels) in drylands of northern China. The results showed that the taxonomic diversity and phylogenetic diversity increased significantly while most of functional diversity indices did not differ significantly along the aridity gradient. The functional diversity was more important than taxonomic and phylogenetic diversity to plant communities, and the importance of taxonomic and phylogenetic diversity varied greatly and inversely along the aridity gradient. The HB index could much better reflect the positive or negative exponential relationships with soil properties compared to the single diversity index. Further, the aridity weakened the positive effects of plant diversity on several soil properties (including soil water content, soil organic carbon and soil total nitrogen), and indirectly strengthened the accumulation of soil total phosphorus, as well as intensified the soil coarsening by limiting the negative effects of plant diversity on soil sand content. Our findings suggest that the holistic biodiversity index can represent the overall traits of plant diversity in drylands, and guide a further step to understand the role of plant diversity in plant-soil relationships of dryland ecosystems.
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Affiliation(s)
- Shuhan Li
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Guangyao Gao
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Cong Wang
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Zongshan Li
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Xiaoming Feng
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Bojie Fu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
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17
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Bosco L, Yañez O, Schauer A, Maurer C, Cushman SA, Arlettaz R, Jacot A, Seuberlich T, Neumann P, Schläppi D. Landscape structure affects temporal dynamics in the bumble bee virome: Landscape heterogeneity supports colony resilience. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174280. [PMID: 38942311 DOI: 10.1016/j.scitotenv.2024.174280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 06/23/2024] [Accepted: 06/23/2024] [Indexed: 06/30/2024]
Abstract
Virus spillovers from managed honey bees, Apis mellifera, are thought to contribute to the decline of wild pollinators, including bumble bees. However, data on the impact of such viruses on wild pollinators remain scarce, and the influence of landscape structure on virus dynamics is poorly understood. In this study, we deployed bumble bee colonies in an agricultural landscape and studied changes in the bumble bee virome during field placement under varying habitat composition and configuration using a multiscale analytical framework. We estimated prevalence of viruses and viral loads (i.e. number of viral genomic equivalent copies) in bumble bees before and after placing them in the field using next generation sequencing and quantitative PCR. The results show that viral loads and number of different viruses present increased during placement in the field and that the virus composition of the colonies shifted from an initial dominance of honey bee associated viruses to a higher number (in both viral loads and number of viruses present) of bumble bee associated viruses. Especially DWV-B, typical for honey bees, drastically decreased after the time in the field. Viral loads prior to placing colonies in the field showed no effect on colony development, suggesting low impacts of these viruses in field settings. Notably, we further demonstrate that increased habitat diversity results in a lower number of different viruses present in Bombus colonies, while colonies in areas with well-connected farmland patches decreased in their total viral load after field placement. Our results emphasize the importance of landscape heterogeneity and connectivity for wild pollinator health and that these influences predominate at fine spatial scales.
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Affiliation(s)
- Laura Bosco
- LUOMUS - Finnish Museum of Natural History, PL 17 - P.O. Box 17, 00014, University of Helsinki, Finland; Division of Conservation Biology, Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland.
| | - Orlando Yañez
- Institute of Bee Health, Vetsuisse Faculty, University of Bern, Schwarzenburgstrasse 161, 3003 Bern, Switzerland.
| | - Alexandria Schauer
- Institute of Bee Health, Vetsuisse Faculty, University of Bern, Schwarzenburgstrasse 161, 3003 Bern, Switzerland.
| | - Corina Maurer
- Division of Conservation Biology, Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland; Agroecology and Environment, Agroscope, Reckenholzstrasse 191, 8046 Zürich, Switzerland; Ecosystems Landscape Evolution, Institute of Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, 8092 Zürich, Switzerland.
| | - Samuel A Cushman
- Wildlife Conservation Research Unit, Department of Biology, University of Oxford, Oxford, United Kingdom
| | - Raphaël Arlettaz
- Division of Conservation Biology, Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland.
| | - Alain Jacot
- Division of Conservation Biology, Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, 3012 Bern, Switzerland; Swiss Ornithological Institute, Regional Office Valais, 1950 Sion, Switzerland.
| | - Torsten Seuberlich
- Division of Neurological Sciences, University of Bern, Bern, Switzerland.
| | - Peter Neumann
- Institute of Bee Health, Vetsuisse Faculty, University of Bern, Schwarzenburgstrasse 161, 3003 Bern, Switzerland.
| | - Daniel Schläppi
- Institute of Bee Health, Vetsuisse Faculty, University of Bern, Schwarzenburgstrasse 161, 3003 Bern, Switzerland; School of Biological Sciences, University of Bristol, Life Science Building, 24 Tyndall Avenue, BS8 1TQ Bristol, United Kingdom.
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18
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Liebmann L, Schreiner VC, Vormeier P, Weisner O, Liess M. Combined effects of herbicides and insecticides reduce biomass of sensitive aquatic invertebrates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174343. [PMID: 38960172 DOI: 10.1016/j.scitotenv.2024.174343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 06/24/2024] [Accepted: 06/26/2024] [Indexed: 07/05/2024]
Abstract
The structure and biomass of aquatic invertebrate communities play a crucial role in the matter dynamics of streams. However, biomass is rarely quantified in ecological assessments of streams, and little is known about the environmental and anthropogenic factors that influence it. In this study, we aimed to identify environmental factors that are associated with invertebrate structure and biomass through a monitoring of 25 streams across Germany. We identified invertebrates, assigned them to taxonomic and trait-based groups, and quantified biomass using image-based analysis. We found that insecticide pressure generally reduced the abundance of insecticide-vulnerable populations (R2 = 0.43 applying SPEARpesticides indicator), but not invertebrate biomass. In contrast, herbicide pressure reduced the biomass of several biomass aggregations. Especially, insecticide-sensitive populations, that were directly (algae feeder, R2 = 0.39) or indirectly (predators, R2 = 0.29) dependent on algae, were affected. This indicated a combined effect of possible food shortage due to herbicides and direct insecticide pressure. Specifically, all streams with increased herbicide pressure showed a reduced overall biomass share of Trichoptera from 43 % to 3 % and those of Ephemeroptera from 20 % to 3 % compared to streams grouped by low herbicide pressure. In contrast, insecticide-insensitive Gastropoda increased from 10 % to 45 %, and non-vulnerable leaf-shredding Crustacea increased from 10 % to 22 %. In summary, our results indicate that at the community level, the direct effects of insecticides and the indirect, food-mediated effects of herbicides exert a combined effect on the biomass of sensitive insect groups, thus disrupting food chains at ecosystem level.
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Affiliation(s)
- Liana Liebmann
- UFZ, Helmholtz Centre for Environmental Research, System-Ecotoxicology, 04318 Leipzig, Germany; Department Evolutionary Ecology & Environmental Toxicology (E3T), Institute of Ecology, Diversity and Evolution, Faculty of Biological Sciences, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany
| | - Verena C Schreiner
- Ecotoxicology, Research Centre One Health Ruhr of the University Alliance Ruhr, Faculty of Biology, University Duisburg-Essen, 45141 Essen, Germany
| | - Philipp Vormeier
- UBA, German Environment Agency, Department Water and Soil, 06844 Dessau-Roßlau, Germany
| | - Oliver Weisner
- UBA, German Environment Agency, Department International Aspects and Pesticides, 06844 Dessau-Roßlau, Germany
| | - Matthias Liess
- UFZ, Helmholtz Centre for Environmental Research, System-Ecotoxicology, 04318 Leipzig, Germany; RWTH Aachen University, Institute of Ecology & Computational Life Science, 52056 Aachen, Germany.
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19
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Liu YJ, Gong S, Wang YB, Yang ZL, Hu WH, Feng B. Biogeography and community assembly of soil fungi from alpine meadows in southwestern China show the importance of climatic selection. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174477. [PMID: 38964412 DOI: 10.1016/j.scitotenv.2024.174477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Revised: 07/01/2024] [Accepted: 07/01/2024] [Indexed: 07/06/2024]
Abstract
Soil fungi are pivotal in alpine and arctic ecosystems that are vulnerable to climate changes. Previous studies have shown broad connections between soil fungi in the arctic and alpine regions, but most of these studies are mainly from Europe and North America, with more sporadic studies from East Asia. Currently, little is known about the biogeographic relationships between soil fungi in alpine meadows of southwestern China (AMSC) and other regions of the world. In addition, the regional-scale spatial patterns of fungal communities in the AMSC, as well as their driving factors and ecological processes, are also poorly understood. In this study, we collected roots and surrounding soils of two dominant ectomycorrhizal plants, Bistorta vivipara and B. macrophylla from the AMSC, and performed bioinformatic and statistical analyses based on high-throughput sequencing of ITS2 amplicons. We found that: (1) fungi from the AMSC were closely related with those from boreal forests and tundra, and saprotrophic fungi had higher dispersal potential than ectomycorrhizal fungi; (2) community compositions exhibited clear divergences among geographic regions and between root and soil samples; (3) climate was the predominant factor driving regional-scale spatial patterns but had less explanatory power for saprotrophic and total fungi from roots than those from soils; (4) homogeneous selection and drift were the key ecological processes governing community assembly, but in communities of saprotrophic and total fungi from soil samples, drift contributed less and its role was partially replaced by dispersal limitation. This study highlights the importance of climatic selection and stochastic processes on fungal community assembly in alpine regions, and emphasizes the significance of simultaneously investigating fungi with different trophic modes and from both roots and soils.
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Affiliation(s)
- Yong Jie Liu
- Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, China; School of Life Sciences, Yunnan University, China
| | - Sai Gong
- School of Horticulture, Anhui Agricultural University, China
| | - Yuan Bing Wang
- Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, China
| | - Zhu L Yang
- Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, China
| | - Wei Hong Hu
- School of Life Sciences, Yunnan University, China.
| | - Bang Feng
- Key Laboratory of Phytochemistry and Natural Medicines, Kunming Institute of Botany, Chinese Academy of Sciences & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, China.
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20
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Lu Q, An Z, Zhang B, Lu X, Mao X, Li J, Chang SX, Liu Y, Fu X. Optimizing tradeoff strategies of soil microbial community between metabolic efficiency and resource acquisition along a natural regeneration chronosequence. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174337. [PMID: 38964388 DOI: 10.1016/j.scitotenv.2024.174337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 05/09/2024] [Accepted: 06/26/2024] [Indexed: 07/06/2024]
Abstract
The tradeoff between community-level soil microbial metabolic efficiency and resource acquisition strategies during natural regeneration remains unclear. Herein, we examined variations in soil extracellular enzyme activity, microbial metabolic quotient (qCO2), and microbial carbon use efficiency (CUE) along a chronosequence of natural regeneration by sampling secondary forests at 1, 10, 20, 30, 40, and 100 years after rubber plantation (RP) clearance. The results showed that the natural logarithms of carbon (C)-, nitrogen (N)-, and phosphorus (P)-acquiring enzyme activities were 1:1.68:1.37 and 1:1.54:1.38 in the RP and secondary forests, respectively, thus demonstrating that microbial metabolism was co-limited by N and P. Moreover, the soil microbial C limitation initially increased (1-40 years) and later decreased (100 years). Overall, the qCO2 increased, decreased, and then increased again in the initial (< 10 years), middle (10-40 years), and late (100 years) successional stages, respectively. Except for specific P-acquiring enzyme activities, the changes in other indicators with natural regeneration were consistent in the dry and wet seasons. Both qCO2 and CUE were mainly predicted by microbial community composition and physiological traits. These results indicate that soil microbial communities could employ tradeoff strategies between metabolic efficiency and resource acquisition to cope with variations in resources. Our findings provide new information on tradeoff strategies between metabolic efficiency and resource acquisition during natural regeneration.
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Affiliation(s)
- Qiang Lu
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China; Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China; Department of Renewable Resources, University of Alberta, Edmonton, AB T6G 2E3, Canada
| | - Zhengfeng An
- Department of Renewable Resources, University of Alberta, Edmonton, AB T6G 2E3, Canada
| | - Beibei Zhang
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China
| | - Xiaoqiang Lu
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Xia Mao
- Jiangsu Vocational College of Agriculture and Forestry, Zhenjiang 212400, China
| | - Jiaqi Li
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China
| | - Scott X Chang
- Department of Renewable Resources, University of Alberta, Edmonton, AB T6G 2E3, Canada
| | - Yan Liu
- State Environmental Protection Key Laboratory of Biodiversity and Biosafety, Nanjing Institute of Environmental Sciences, Ministry of Ecology and Environment, Nanjing 210042, China.
| | - Xiangxiang Fu
- Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing 210037, China.
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21
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Díaz-Ruiz F, Descalzo E, Martínez-Jauregui M, Soliño M, Márquez AL, Farfán MÁ, Real R, Ferreras P, Delibes-Mateos M. Combining ranger records and biogeographical models to identify the current and potential distribution of an expanding mesocarnivore in southern Europe. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174216. [PMID: 38914319 DOI: 10.1016/j.scitotenv.2024.174216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Revised: 06/20/2024] [Accepted: 06/21/2024] [Indexed: 06/26/2024]
Abstract
Human-wildlife conflicts (HWC) are increasing and are potentially harmful to both people and wildlife. Understanding the current and potential distribution of wildlife species involved in HWC, such as carnivores, is essential for implementing management and conservation measures for such species. In this study, we assessed both the current distribution and potential distribution (forecast) of the Egyptian mongoose (Herpestes ichneumon) in the central part of the Iberian Peninsula. We acquired data concerning mongoose occurrences through an online questionnaire sent to environmental rangers. We used the municipality level as the sampling unit because all municipalities within the study area were covered at least by one ranger. Using the information provided by rangers (i.e. occurrences in their municipalities), we constructed environmental favourability distribution models to assess current and potential mongoose distribution through current distribution models (CDM) and ecological models (EM), respectively. >300 rangers participated in the survey and mongooses were reported in a total of 181 of 921 municipalities studied. The CDM model showed a current distribution mainly concentrated on the western part of the study area, where intermediate-high favourability values predominated. The EM model revealed a wider potential distribution, including the south-east part of the study area, which was also characterised by intermediate-high favourability values. Our predictions were verified using independent data, including confirmation of mongoose reproduction by rangers, reports by other experts, and field sampling in some areas. Our innovative approach based on an online survey to rangers coupled with environmental favourability models is shown to be a useful methodology for assessing the current distribution of cryptic but expanding wildlife species, while also enabling estimations of future steps in their expansion. The approach proposed may help policy decision-makers seeking to ensure the conservation of expanding wildlife species, for example, by designing awareness campaigns in areas where the target species is expected to arrive.
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Affiliation(s)
- Francisco Díaz-Ruiz
- Conservation Biology Research Group, Departamento de Anatomía, Biología Celular y Zoología, Universidad de Extremadura, 06006 Badajoz, Spain; Biogeography, Diversity, and Conservation Research Team, Dept. Biología Animal, Facultad de Ciencias, Universidad de Málaga, 29071 Málaga, Spain
| | - Esther Descalzo
- Instituto de Investigación en Recursos Cinegéticos, IREC (CSIC-UCLM-JCCM), Ronda de Toledo 12, 13071 Ciudad Real, Spain
| | - María Martínez-Jauregui
- Instituto de Ciencias Forestales (ICIFOR), INIA-CSIC, Ctra. de La Coruña km 7.5, 28040 Madrid, Spain
| | - Mario Soliño
- Institute of Marine Research-CSIC, Department of Ecology and Marine Resources, C/Eduardo Cabello 6, Vigo, 36208, Pontevedra, Spain
| | - Ana Luz Márquez
- Biogeography, Diversity, and Conservation Research Team, Dept. Biología Animal, Facultad de Ciencias, Universidad de Málaga, 29071 Málaga, Spain
| | - Miguel Ángel Farfán
- Biogeography, Diversity, and Conservation Research Team, Dept. Biología Animal, Facultad de Ciencias, Universidad de Málaga, 29071 Málaga, Spain
| | - Raimundo Real
- Biogeography, Diversity, and Conservation Research Team, Dept. Biología Animal, Facultad de Ciencias, Universidad de Málaga, 29071 Málaga, Spain
| | - Pablo Ferreras
- Instituto de Investigación en Recursos Cinegéticos, IREC (CSIC-UCLM-JCCM), Ronda de Toledo 12, 13071 Ciudad Real, Spain
| | - Miguel Delibes-Mateos
- Instituto de Estudios Sociales Avanzados (IESA-CSIC), Campo Santo de los Mártires 7, 14004 Córdoba, Spain.
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22
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Walthert L, Etzold S, Carminati A, Saurer M, Köchli R, Zweifel R. Coordination between degree of isohydricity and depth of root water uptake in temperate tree species. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174346. [PMID: 38944298 DOI: 10.1016/j.scitotenv.2024.174346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 06/26/2024] [Accepted: 06/26/2024] [Indexed: 07/01/2024]
Abstract
In an increasingly dry environment, it is crucial to understand how tree species use soil water and cope with drought. However, there is still a knowledge gap regarding the relationships between species-specific stomatal behaviour, spatial root distribution, and root water uptake (RWU) dynamics. Our study aimed to investigate above- and below-ground aspects of water use during soil drying periods in four temperate tree species that differ in stomatal behaviour: two isohydric tracheid-bearing conifers, Scots pine and Norway spruce, and two more anisohydric deciduous species, the diffuse-porous European beech, and the ring-porous Downy oak. From 2015 to 2020, soil-tree-atmosphere-continuum parameters were measured for each species in monospecific forests where trees had no access to groundwater. The hourly time series included data on air temperature, vapor pressure deficit, soil water potential, soil hydraulic conductivity, and RWU to a depth of 2 m. Analysis of drought responses included data on stem radius, leaf water potential, estimated osmotically active compounds, and drought damage. Our study reveals an inherent coordination between stomatal regulation, fine root distribution and water uptake. Compared to conifers, the more anisohydric water use of oak and beech was associated with less strict stomatal closure, greater investment in deep roots, four times higher maximum RWU, a shift of RWU to deeper soil layers as the topsoil dried, and a more pronounced soil drying below 1 m depth. Soil hydraulic conductivity started to limit RWU when values fell below 10-3 to 10-5 cm/d, depending on the soil. As drought progressed, oak and beech may also have benefited from their leaf osmoregulatory capacity, but at the cost of xylem embolism with around 50 % loss of hydraulic conductivity when soil water potential dropped below -1.25 MPa. Consideration of species-specific water use is crucial for forest management and vegetation modelling to improve forest resilience to drought.
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Affiliation(s)
- Lorenz Walthert
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland.
| | - Sophia Etzold
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Andrea Carminati
- Physics of Soils and Terrestrial Ecosystems, Department of Environmental Systems Science, ETH Zürich, Universitätsstrasse 16, 8092 Zürich, Switzerland
| | - Matthias Saurer
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Roger Köchli
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
| | - Roman Zweifel
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland
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Toumi C, Gauthier O, Grall J, Thiébaut É, Boyé A. Disentangling the effect of space, time, and environmental and anthropogenic drivers on coastal macrobenthic β diversity in contrasting habitats over 15 years. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:173919. [PMID: 38889817 DOI: 10.1016/j.scitotenv.2024.173919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Revised: 05/22/2024] [Accepted: 06/09/2024] [Indexed: 06/20/2024]
Abstract
Coastal zones are biodiversity hotspots and deliver essential ecosystem functions and services, yet they are exposed to multiple and interacting anthropogenic and environmental constraints. The individual and cumulative effects of these constraints on benthic communities, a key component of coastal ecosystems, and their variability across space and time, remains to be thoroughly quantified to guide conservation actions. Here, we explored how the presence of biogenic habitats influences the response of benthic communities to natural and anthropogenic constraints. We investigated this effect in both intertidal and subtidal habitats exposed to different pressures. We used data collected in the North-East Atlantic over 15 years (2005-2019) as part of the REBENT monitoring program, covering 38 sites of bare sediments, intertidal seagrass beds and maerl beds. We collected a range of environmental variables and proxies of anthropogenic pressures and used variation and hierarchical partitioning with redundancy analyses to estimate their relative effect on macrobenthic communities. We used descriptors modeling spatial and temporal structures (dbMEMs) to explore the scale of their effects and potential missing predictors. The selected variables explained between 53 % and 64 % of macrobenthic β diversity depending on habitat and depth. Fishing pressures, sedimentary and hydrodynamics variables stood out as the most important predictors across all habitats while proxies of anthropogenic pressures were overall more important in intertidal habitats. In the intertidal, presence of biogenic habitat strongly modulated the amount of explained variance and the identity of the selected variable. Across both tidal levels, analysis of models' residuals further indicated that biogenic habitats might mitigate the effect of extreme environmental events. Our study provides a hierarchy of the most important drivers of benthic communities across different habitats and tidal levels, emphasizing the prominence of anthropogenic pressures on intertidal communities and the role of biogenic habitats in mitigating environmental changes.
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Affiliation(s)
- Chirine Toumi
- LEMAR, Univ Brest, CNRS, IRD, Ifremer, 29280 Plouzané, France.
| | - Olivier Gauthier
- LEMAR, Univ Brest, CNRS, IRD, Ifremer, 29280 Plouzané, France; OSU IUEM, Univ Brest, CNRS, IRD, 29280 Plouzané, France
| | - Jacques Grall
- LEMAR, Univ Brest, CNRS, IRD, Ifremer, 29280 Plouzané, France; OSU IUEM, Univ Brest, CNRS, IRD, 29280 Plouzané, France
| | - Éric Thiébaut
- Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, Adaptation et Diversité en Milieu Marin, Place Georges Teissier, CS90074, 29688 Roscoff Cedex, France; Sorbonne Université, CNRS, OSU STAMAR, UAR2017, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - Aurélien Boyé
- Ifremer, Centre de Bretagne, DYNECO, Laboratory of Coastal Benthic Ecology, 29280 Plouzané, France
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24
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Huang L, Bao W, Kuzyakov Y, Hu H, Zhang H, Li F. Enzyme stoichiometry reveals microbial nitrogen limitation in stony soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174124. [PMID: 38909790 DOI: 10.1016/j.scitotenv.2024.174124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 04/19/2024] [Accepted: 06/16/2024] [Indexed: 06/25/2024]
Abstract
Resource limitation for soil microorganisms is the crucial factor in nutrient cycling and vegetation development, which are especially important in arid climate. Given that rock fragments strongly impact hydrologic and geochemical processes in arid areas, we hypothesized that microbial resource (C and N) limitation will increase along the rock fragment content (RFC) gradient. We conducted a field experiment in Minjiang river arid valleys with four RFC content (0 %, 25 %, 50 %, and 75 %, V V-1) and four vegetation types (Artemisia vestita, Bauhinia brachycarpa, Sophora davidii, and the soil without plants). Activities of C (β-1,4-glucosidase, BG), N (β-1,4-N-acetyl-glucosaminidase, NAG; L-leucine aminopeptidase, LAP), and P (acid phosphatase, ACP) acquiring enzymes were investigated to assess the limitations by C, N or P. In unplanted soil, the C acquiring enzyme activity decreased by 43 %, but N acquiring enzyme activity increased by 72 % in 75 % RFC than those in rock-free soils (0 % RFC). Increasing RFC reduced C:N and C:P enzymatic ratios, as well as vector length and vector angle (< 45°). Plants increased the activities of C and N acquiring enzymes in soils, as well as C:P and N:P enzyme activities, as well as vector length (by 5.6 %-25 %), but decreased vector angle (by 13 %-21 %). Enzyme stoichiometry was dependent on biotic and abiotic factors, such as soil water content, soil C:N, and total content of phospholipid fatty acids, reflecting microbial biomass content. Increased RFC shifted enzymatic stoichiometry toward lower C but stronger N limitation for microorganisms. Vegetation increased microbial C and N limitation, and impacted the enzymatic activities and stoichiometry depending on shrub functional groups. Consequently, the direct effects of vegetation, nutrient availability and microbial biomass content, as well as indirect effects of soil properties collectively increased microbial resource limitations along the RFC gradient.
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Affiliation(s)
- Long Huang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization& Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Weikai Bao
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization& Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan, China
| | - Yakov Kuzyakov
- Department of Soil Science of Temperate Ecosystems, Department of Agricultural Soil Science, University of Goettingen, 37077 Göttingen, Germany; Peoples Friendship University of Russia (RUDN University), 117198 Moscow, Russia; Institute of Environmental Sciences, Kazan Federal University, 420049 Kazan, Russia
| | - Hui Hu
- Henan Key Laboratory of Water Pollution Control and Rehabilitation, Henan University of Urban Construction, Pingdingshan 467000, China
| | - Hanyue Zhang
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization& Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Fanglan Li
- CAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization& Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, Sichuan, China.
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25
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Zheng Y, Ye J, Pei J, Fang C, Li D, Ke W, Song X, Sardans J, Peñuelas J. Initial soil condition, stand age, and aridity alter the pathways for modifying the soil carbon under afforestation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174448. [PMID: 38969120 DOI: 10.1016/j.scitotenv.2024.174448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Revised: 06/25/2024] [Accepted: 07/01/2024] [Indexed: 07/07/2024]
Abstract
Afforestation is a crucial pathway for ecological restoration and has the potential to modify soil microbial community, thereby impacting the cycling and accumulation of carbon in soil across diverse patterns. However, the overall patterns of how afforestation impacts below-ground carbon cycling processes remain uncertain. In this comprehensive meta-analysis, we systematically evaluated 7045 observations from 210 studies worldwide to evaluate the influence of afforestation on microbial communities, enzyme activities, microbial functions, and associated physicochemical properties of soils. Afforestation increases microbial biomass, carbon and nitrogen hydrolase activities, and microbial respiration, but not carbon oxidase activity and nitrogen decomposition rate. Conversely, afforestation leads to a reduction in the metabolic quotient, with significant alteration of bacterial and fungal community structures and positive effects on the fungi: bacteria ratio rather than alpha and beta diversity metrics. We found a total 77 % increase in soil organic carbon (SOC) content after afforestation, which varied depending on initial SOC content before afforestation, afforestation stand age, and aridity index of afforestation sites. The modified SOC is associated with bacterial community composition along with intracellular metabolic quotient and extracellular carbon degrading enzyme activity playing a role. These findings provide insights into the pathways through which afforestation affects carbon cycling via microorganisms, thus improving our knowledge of soil carbon reservoir's responses to afforestation under global climate change.
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Affiliation(s)
- Yang Zheng
- Key Laboratory of Water Cycle and Related Land Surface Processes, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jiansheng Ye
- State Key Laboratory of Grassland Agro-ecosystems, College of Ecology, Lanzhou University, No. 222, South Tianshui Road, Lanzhou 730000, China
| | - Jiuying Pei
- State Key Laboratory of Grassland Agro-ecosystems, College of Ecology, Lanzhou University, No. 222, South Tianshui Road, Lanzhou 730000, China; CSIC Global Ecology Unit CREAF-CSIC-UAB, E08193 Bellaterra, Catalonia, Spain; CREAF, E08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Chao Fang
- Key Laboratory of Ecosystem Carbon Source and Sink, China Meteorological Administration (ECSS-CMA), School of Ecology and Applied Meteorology, Nanjing University of Information Science and Technology, Nanjing 210044, China
| | - Danfeng Li
- Key Laboratory of Water Cycle and Related Land Surface Processes, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Wenbin Ke
- State Key Laboratory of Grassland Agro-ecosystems, College of Ecology, Lanzhou University, No. 222, South Tianshui Road, Lanzhou 730000, China
| | - Xin Song
- State Key Laboratory of Grassland Agro-ecosystems, College of Ecology, Lanzhou University, No. 222, South Tianshui Road, Lanzhou 730000, China; CSIC Global Ecology Unit CREAF-CSIC-UAB, E08193 Bellaterra, Catalonia, Spain; CREAF, E08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Jordi Sardans
- CSIC Global Ecology Unit CREAF-CSIC-UAB, E08193 Bellaterra, Catalonia, Spain; CREAF, E08193 Cerdanyola del Vallès, Catalonia, Spain
| | - Josep Peñuelas
- CSIC Global Ecology Unit CREAF-CSIC-UAB, E08193 Bellaterra, Catalonia, Spain; CREAF, E08193 Cerdanyola del Vallès, Catalonia, Spain
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26
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Martinez Del Castillo E, Torbenson MCA, Reinig F, Konter O, Ziaco E, Büntgen U, Esper J. Diverging growth trends and climate sensitivities of individual pine trees after the 1976 extreme drought. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174370. [PMID: 38945248 DOI: 10.1016/j.scitotenv.2024.174370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 06/27/2024] [Accepted: 06/27/2024] [Indexed: 07/02/2024]
Abstract
Summer droughts are affecting the productivity and functioning of central European forests, with potentially lasting consequences for species composition and carbon sequestration. Long-term recovery rates and individual growth responses that may diverge from species-specific and population-wide behaviour are, however, poorly understood. Here, we present 2052 pine (Pinus sylvestris) ring width series from 19 forest sites in south-west Germany to investigate growth responses of individual trees to the exceptionally hot and dry summer of 1976. This outstanding drought event presents a distinctive test case to examine long-term post-drought recovery dynamics. We have proposed a new classification approach to identify a distinct sub-population of trees, referred to as "temporarily affected trees", with a prevalence ranging from 9 to 33 % across the forest stands. These trees exhibited an exceptionally prolonged growth suppression, lasting over a decade, indicating significantly lower resilience to the 1976 drought and a 50 % reduced capacity to recover to pre-drought states. Furthermore, shifts in resilience and recovery dynamics are accompanied by changing climate sensitivities, notably an increased response to maximum temperatures and summer droughts in post-1976 affected pines. Our findings underscore the likely interplay between individual factors and micro-site conditions that contribute to divergent tree responses to droughts. Assessing these factors at the individual tree level is recommended to advancing our understanding of forest responses to extreme drought events. By analyzing sub-population growth patterns, our study provides valuable insights into the impacts of summer droughts on central European forests in context of increasing drought events.
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Affiliation(s)
| | - Max C A Torbenson
- Department of Geography, Johannes Gutenberg-University Mainz, Mainz, Germany
| | - Frederick Reinig
- Department of Geography, Johannes Gutenberg-University Mainz, Mainz, Germany
| | - Oliver Konter
- Department of Geography, Johannes Gutenberg-University Mainz, Mainz, Germany
| | - Emanuele Ziaco
- Department of Geography, Johannes Gutenberg-University Mainz, Mainz, Germany
| | - Ulf Büntgen
- Department of Geography, University of Cambridge, Cambridge, United Kingdom; Global Change Research Institute of the Czech Academy of Sciences (CzechGlobe), Brno, Czech Republic; Department of Geography, Faculty of Science, Masaryk University, Brno, Czech Republic; Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Jan Esper
- Department of Geography, Johannes Gutenberg-University Mainz, Mainz, Germany; Global Change Research Institute of the Czech Academy of Sciences (CzechGlobe), Brno, Czech Republic
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27
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Caravaca F, Torres P, Díaz G, Roldán A. Selective shifts in the rhizosphere microbiome during the drought season could explain the success of the invader Nicotiana glauca in semiarid ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174444. [PMID: 38964394 DOI: 10.1016/j.scitotenv.2024.174444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 06/28/2024] [Accepted: 06/30/2024] [Indexed: 07/06/2024]
Abstract
The rhizosphere microbiome plays a crucial role in the ability of plants to colonize and thrive in stressful conditions such as drought, which could be decisive for the success of exotic plant invasion in the context of global climate change. The aim of this investigation was to examine differences in the composition, structure, and functional traits of the microbial community of the invader Nicotiana glauca R.C. Graham and native species growing at seven different Mediterranean semiarid locations under two distinct levels of water availability, corresponding to the wet and dry seasons. The results show that the phylum Actinobacteriota was an indicator phylum of the dry season as well as for the community of N. glauca. The dominant indicator bacterial families of the dry season were 67-14 (unclassified family), Pseudonocardiaceae, and Sphingomonadaceae, being relatively more abundant in the invasive rhizosphere. The relative abundances of the indicator fungal families Aspergillaceae (particularly the indicator genus Aspergillus), Glomeraceae, and Claroideoglomeraceae were higher in the invasive rhizosphere. The relative abundance of mycorrhizal fungi was higher in the invasive rhizosphere in the dry season (by about 40 % in comparison to that of native plants), without significant differences between invasive and native plants in the wet season. Bacterial potential functional traits related to energy and precursor metabolites production and also biosynthesis of cell wall, cofactors, vitamins, and amino acids as well as catabolic enzymes involved in the P cycle prevailed in the invasive rhizosphere under drought conditions. This study shows that the pronounced and beneficial shifts in the microbiome assembly and functions in the rhizosphere of N. glauca under conditions of low soil water availability can represent a clear advantage for its establishment.
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Affiliation(s)
- F Caravaca
- CSIC-Centro de Edafología y Biología Aplicada del Segura, Department of Soil and Water Conservation, P.O. Box 164, Campus de Espinardo 30100, Murcia, Spain.
| | - P Torres
- Universidad Miguel Hernández de Elche, Department of Applied Biology, Avda. Ferrocarril, s/n. Edf. Laboratorios-03202-Elche, Alicante, Spain
| | - G Díaz
- Universidad Miguel Hernández de Elche, Department of Applied Biology, Avda. Ferrocarril, s/n. Edf. Laboratorios-03202-Elche, Alicante, Spain
| | - A Roldán
- CSIC-Centro de Edafología y Biología Aplicada del Segura, Department of Soil and Water Conservation, P.O. Box 164, Campus de Espinardo 30100, Murcia, Spain
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28
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Zhang W, Song Y, Ma S, Lu J, Zhu J, Wang J, Li X. Rice-crayfish farming system promote subsoil microbial residual carbon accumulation and stabilization by mediating microbial metabolism process. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174188. [PMID: 38925393 DOI: 10.1016/j.scitotenv.2024.174188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 06/20/2024] [Accepted: 06/20/2024] [Indexed: 06/28/2024]
Abstract
Rice-crayfish farming systems (RCs) can help mitigate climate change by enhancing soil organic carbon (SOC) sequestration. However, the mechanisms that govern the responses of microbial residues carbon (MRC), a key component of SOC, in RCs are not fully understood. We conducted a 6-year field experiment comparing RCs and rice monoculture systems (RMs). Specifically, we explored how MRC formation and stabilization differ between the two systems and how those differences are linked to changes in the metabolic processes of microbes. Results showed that MRC levels in RCs were 5.2 % and 40.0 % higher in the topsoil and subsoil, respectively, compared to RMs, indicating depth-dependent effects. Notably, MRC accumulation and stabilization in RCs were promoted through a cascade of processes of dissolved organic carbon (DOC) accessibility-microbial metabolism-mineral protection. In addition, the mechanism of MRC accumulation in subsoil differed between the two systems. Specifically, RMs improved accessibility of DOC by reducing humification and aromaticity of subsoil DOC, which helped microbes access to resources at lower cost. This decreased the respiration rate of microbes, thereby increasing microbial carbon pump (MCP) efficiency and thus promoting MRC accumulation. By contrast, the crayfish in RCs facilitated carbon exchange between topsoil and subsoil through their burrowing behaviors. This increased carbon allocation for microbial metabolism in the subsoil, supporting a larger microbial population and thus enhancing the MCP capacity, while reducing MRC re-decomposition via enhanced mineral protection, further increasing subsoil MRC accumulation. That is, MRC accumulation in the subsoil of RCs was predominantly driven by microbial population numbers (MCP capacity) whereas that of RMs was mostly driven by microbial anabolic efficacy (MCP efficiency). Our findings reveal a key mechanism by which RCs promoted soil MRC accumulation and stabilization, highlighting the potential role of DOC accessibility-microbial metabolism-mineral protection pathway in regulating MRC accumulation and stabilization.
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Affiliation(s)
- Wanyang Zhang
- College of Resources and Environment, Huazhong Agricultural University/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs/Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China
| | - Yi Song
- College of Resources and Environment, Huazhong Agricultural University/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs/Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China
| | - Shihao Ma
- College of Resources and Environment, Huazhong Agricultural University/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs/Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China
| | - Jianwei Lu
- College of Resources and Environment, Huazhong Agricultural University/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs/Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China
| | - Jun Zhu
- College of Resources and Environment, Huazhong Agricultural University/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs/Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China
| | - Jinping Wang
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; Shuangshui Shuanglv Institute, Huazhong Agricultural University, Wuhan 430070, China
| | - Xiaokun Li
- College of Resources and Environment, Huazhong Agricultural University/Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtze River), Ministry of Agriculture and Rural Affairs/Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Shuangshui Shuanglv Institute, Huazhong Agricultural University, Wuhan 430070, China.
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29
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Fuchs B, Helander M, Saikkonen K, Dobrev PI, Vankova R, Blande JD, Salminen JP, Luntamo N, Muola A. Plant metabolic responses to soil herbicide residues differ under herbivory in two woodland strawberry genotypes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174198. [PMID: 38914330 DOI: 10.1016/j.scitotenv.2024.174198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2024] [Revised: 06/18/2024] [Accepted: 06/20/2024] [Indexed: 06/26/2024]
Abstract
The use of glyphosate-based herbicides (GBHs) to control weeds has increased exponentially in recent decades, and their residues and degradation products have been found in soils across the globe. GBH residues in soil have been shown to affect plant physiology and specialised metabolite biosynthesis, which, in turn, may impact plant resistance to biotic stressors. In a greenhouse study, we investigated the interactive effects between soil GBH residues and herbivory on the performance, phytohormone concentrations, phenolic compound concentrations and volatile organic compound (VOC) emissions of two woodland strawberry (Fragaria vesca) genotypes, which were classified as herbivore resistant and herbivore susceptible. Plants were subjected to herbivory by strawberry leaf beetle (Galerucella tenella) larvae, and to GBH residues by growing in soil collected from a field site with GBH treatments twice a year over the past eight years. Soil GBH residues reduced the belowground biomass of the susceptible genotype and the aboveground biomass of both woodland strawberry genotypes. Herbivory increased the belowground biomass of the resistant genotype and the root-shoot ratio of both genotypes. At the metabolite level, herbivory induced the emission of several VOCs. Jasmonic acid, abscisic acid and auxin concentrations were induced by herbivory, in contrast to salicylic acid, which was only induced by herbivory in combination with soil GBH residues in the resistant genotype. The concentrations of phenolic compounds were higher in the resistant genotype compared to the susceptible genotype and were induced by soil GBH residues in the resistant genotype. Our results indicate that soil GBH residues can differentially affect plant performance, phytohormone concentrations and phenolic compound concentrations under herbivore attack, in a genotype-dependent manner. Soil GBH altered plant responses to herbivory, which may impact plant resistance traits and species interactions. With ongoing agrochemical pollution, we need to consider plant cultivars with better resistance to polluted soils while maintaining plant resilience under challenging environmental conditions.
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Affiliation(s)
- Benjamin Fuchs
- Biodiversity Unit, University of Turku, 20014 Turku, Finland.
| | - Marjo Helander
- Department of Biology, University of Turku, 20014 Turku, Finland
| | - Kari Saikkonen
- Biodiversity Unit, University of Turku, 20014 Turku, Finland
| | - Petre I Dobrev
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojova 263, 16502 Prague, Czech Republic
| | - Radomira Vankova
- Laboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojova 263, 16502 Prague, Czech Republic
| | - James D Blande
- Department of Environmental and Biological Sciences, University of Eastern Finland, P.O. Box 1627, 70211 Kuopio, Finland
| | - Juha-Pekka Salminen
- Natural Chemistry Research Group, Department of Chemistry, FI-20014, University of Turku, Finland
| | - Niko Luntamo
- Natural Chemistry Research Group, Department of Chemistry, FI-20014, University of Turku, Finland
| | - Anne Muola
- Biodiversity Unit, University of Turku, 20014 Turku, Finland; Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy Research, Ås, Norway
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30
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Ni G, Zhao P, Hou Y, Bai X, Zhang L, Yuan J, Ouyang L, Liu F, Zhu L, Zhao X. Coordination of water use strategies and leaf economic traits in coexisting exotic and native woody species from evergreen and deciduous broadleaf forests. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:173936. [PMID: 38885703 DOI: 10.1016/j.scitotenv.2024.173936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 06/07/2024] [Accepted: 06/09/2024] [Indexed: 06/20/2024]
Abstract
The leaf economics spectrum (LES) describes the covariation of traits relevant for carbon and nutrient economy in different plant species. However, much less is known about the correlation of LES with leaf water economy, not only because some woody species do not follow the rules, but also because they are rarely tested on the widespread, non-native, fast-growing trees. We hypothesized that fast-growing exotic species that spread on the fast side of the LES coordinate their water-use strategies (WUS) to maintain rapid growth, and that the pattern of coordination differs between evergreen and deciduous forests. Using 4 exotic and 4 native species from evergreen and deciduous broadleaf forests in China, we measured 17 traits of LES and WUS and analyzed their functional roles in different species groups. Our results suggest that LES plays a more important role in the coexistence of species within a community, while WUS contributes more to the distribution of species across different regions. The multidimensional coordination of LES and WUS could better explain the growth and distribution of different plant species and shed light on the coexistence of species from different forest types, especially fast-growing woody exotics.
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Affiliation(s)
- Guangyan Ni
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Guangzhou, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Ping Zhao
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Guangzhou, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yuping Hou
- School of Life Sciences, Ludong University, Yantai 264025, China
| | - Xinfu Bai
- School of Life Sciences, Ludong University, Yantai 264025, China
| | - Luohan Zhang
- School of Life Sciences, Ludong University, Yantai 264025, China
| | - Jingjing Yuan
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Guangzhou, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lei Ouyang
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Guangzhou, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Fangyuan Liu
- School of Life Sciences, Ludong University, Yantai 264025, China
| | - Liwei Zhu
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Guangzhou, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiuhua Zhao
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of Vegetation Restoration and Management of Degraded Ecosystems, South China Botanical Garden, Guangzhou, China
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Zhao Y, Wang H, Li Z, Lin G, Fu J, Li Z, Zhang Z, Jiang D. Anthropogenic shrub encroachment has accelerated the degradation of desert steppe soil over the past four decades. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174487. [PMID: 38969107 DOI: 10.1016/j.scitotenv.2024.174487] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 07/02/2024] [Accepted: 07/02/2024] [Indexed: 07/07/2024]
Abstract
Anthropogenic and natural shrub encroachment have similar ecological consequences on native grassland ecosystems. In fact, there is an accelerating trend toward anthropogenic shrub encroachment, as opposed to the century-long process of natural shrub encroachment. However, the soil quality during the transition of anthropogenic shrub encroachment into grasslands remains insufficiently understood. Here, we used a soil quality assessment method that utilized three datasets and two scoring methods to evaluate changes in soil quality during the anthropogenic transition from temperate desert grassland to shrubland. Our findings demonstrated that the soil quality index decreased with increasing shrub cover, from 0.49 in the desert grassland to 0.31 in the shrubland. Our final results revealed a gradual and significant decline of 36.73 % in soil quality during the transition from desert grassland to shrubland. Reduced soil moisture levels, nutrient availability, and microbial activity characterized this decline. Nearly four decades of anthropogenic shrub encroachment have exacerbated soil drought conditions while leading to a decrease in perennial herbaceous plants and an increase in bare ground cover; these factors can explain the observed decline in soil quality. These findings emphasize the importance of considering soil moisture availability and potential thresholds when implementing revegetation strategies in arid and semiarid regions.
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Affiliation(s)
- Yanan Zhao
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; College of Forestry and Pratacuture, Ningxia University, Yinchuan 750021, China
| | - Hongmei Wang
- College of Forestry and Pratacuture, Ningxia University, Yinchuan 750021, China; Ministry of Education Key Laboratory for Restoration and Reconstruction of Degraded Ecosystem in Northwest China, Yinchuan 750021, China.
| | - Zhigang Li
- College of Forestry and Pratacuture, Ningxia University, Yinchuan 750021, China; Ministry of Education Key Laboratory for Restoration and Reconstruction of Degraded Ecosystem in Northwest China, Yinchuan 750021, China
| | - Gang Lin
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jingying Fu
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhili Li
- College of Forestry and Pratacuture, Ningxia University, Yinchuan 750021, China
| | - Zhenjie Zhang
- College of Forestry and Pratacuture, Ningxia University, Yinchuan 750021, China
| | - Dong Jiang
- Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China.
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32
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Liu R, Zhou X, He Y, Du Z, Chen H, Fu Y, Guo L, Zhou G, Zhou L, Li J, Chai H, Huang C, Delgado-Baquerizo M. A transition from arbuscular to ectomycorrhizal forests halts soil carbon sequestration during subtropical forest rewilding. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174330. [PMID: 38945245 DOI: 10.1016/j.scitotenv.2024.174330] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 06/18/2024] [Accepted: 06/25/2024] [Indexed: 07/02/2024]
Abstract
Ecological succession and restoration rapidly promote multiple dimensions of ecosystem functions and mitigate global climate change. However, the factors governing the limited capacity to sequester soil organic carbon (SOC) in old forests are poorly understood. Ecological theory predicts that plants and microorganisms jointly evolve into a more mutualistic relationship to accelerate detritus decomposition and nutrient regeneration in old than young forests, likely explaining the changes in C sinks across forest succession or rewilding. To test this hypothesis, we conducted a field experiment of root-mycorrhizal exclusion in successional subtropical forests to investigate plant-decomposer interactions and their effects on SOC sequestration. Our results showed that SOC accrual rate at the 0-10 cm soil layer was 1.26 mg g-1 yr-1 in early-successional arbuscular mycorrhizal (AM) forests, which was higher than that in the late-successional ectomycorrhizal (EcM) forests with non-significant change. A transition from early-successional AM to late-successional EcM forests increase fungal diversity, especially EcM fungi. In the late-successional forests, the presence of ectomycorrhizal hyphae promotes SOC decomposition and nutrient cycle by increasing soil nitrogen and phosphorus degrading enzyme activity as well as saprotrophic microbial richness. Across early- to late-successional forests, mycorrhizal priming effects on SOC decomposition explain a slow-down in the capacity of older forests to sequester soil C. Our findings suggest that a transition from AM to EcM forests supporting greater C decomposition can halt the capacity of forests to provide nature-based global climate change solutions.
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Affiliation(s)
- Ruiqiang Liu
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Xuhui Zhou
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China; Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem Research, Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China.
| | - Yanghui He
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Zhenggang Du
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Hongyang Chen
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Yuling Fu
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem Research, Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China
| | - Liqi Guo
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Guiyao Zhou
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes 10, E-41012 Sevilla, Spain
| | - Lingyan Zhou
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem Research, Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200062, China
| | - Jie Li
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Hua Chai
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Changjiang Huang
- Northeast Asia ecosystem Carbon sink research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin 150040, China
| | - Manuel Delgado-Baquerizo
- Laboratorio de Biodiversidad y Funcionamiento Ecosistémico, Instituto de Recursos Naturales y Agrobiología de Sevilla (IRNAS), CSIC, Av. Reina Mercedes 10, E-41012 Sevilla, Spain
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Ortúzar M, Riesco R, Criado M, Alonso MDP, Trujillo ME. Unraveling the dynamic interplay of microbial communities associated to Lupinus angustifolius in response to environmental and cultivation conditions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174277. [PMID: 38944300 DOI: 10.1016/j.scitotenv.2024.174277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 06/05/2024] [Accepted: 06/23/2024] [Indexed: 07/01/2024]
Abstract
Microorganisms form dynamic communities with plants, providing benefits such as nutrient acquisition and stress resilience. Understanding how these microorganisms are affected by environmental factors such as growth conditions and soil characteristics are essential for harnessing these communities for sustainable agriculture practices and their response to climate change. The microbiome associated to Lupinus angustifolius, a legume native in Europe, with a high protein value and stress resilience was characterized for the first time. Using 16S rRNA gene and ITS amplicon sequencing, we characterized the compositional and temporal changes of the bacterial and fungal communities associated to the soil, rhizosphere, and plant compartments where Lupinus angustifolius grows naturally. Our results suggest that the main difference in the soil microbial communities is related to the edaphic properties, although environmental factors such as temperature, humidity or rainfall also influenced the composition of the soil microbial communities. We also characterized the bacterial communities associated with the rhizosphere, roots, nodules, and leaves of wild plants collected in the field and compared them against plants obtained under greenhouse conditions. In the plant compartments, the bacterial composition appeared to be more affected by the growing conditions (field vs greenhouse), than by soil characteristics or location. These results can be used to identify key taxa that may play crucial roles in the development and adaptation of the host plant and its associated microbiota to environmental changes and highlight the importance of characterizing the plant microbiomes in their natural habitats. Soil, influenced by climatic seasons, shapes the plant microbiome assembly. Lupinus recruits a core microbiome across rhizosphere, roots, nodules, and leaves, that is stable across locations. However, cultivation conditions may alter microbiome dynamics, impacting the adaptability of its components. Wild plants show a resilient and adaptable microbiome while germination and cultivation in greenhouse conditions alter its composition and vulnerability.
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Affiliation(s)
- Maite Ortúzar
- Departamento de Microbiología y Genética, Campus Miguel de Unamuno, University of Salamanca, 37007 Salamanca, Spain.
| | - Raúl Riesco
- Departamento de Microbiología y Genética, Campus Miguel de Unamuno, University of Salamanca, 37007 Salamanca, Spain.
| | - Marco Criado
- Area of Edaphology and Agricultural Chemistry, Faculty of Agricultural and Environmental Sciences, University of Salamanca, 37007 Salamanca, Spain.
| | - María Del Pilar Alonso
- Area of Edaphology and Agricultural Chemistry, Faculty of Agricultural and Environmental Sciences, University of Salamanca, 37007 Salamanca, Spain.
| | - Martha E Trujillo
- Departamento de Microbiología y Genética, Campus Miguel de Unamuno, University of Salamanca, 37007 Salamanca, Spain.
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Zhou F, Jiang Y, Han C, Deng H, Dai Z, Wang Z, Zhong W. Ensemble learning algorithms to elucidate the core microbiome's impact on carbon content and degradation properties at the soil aggregate level. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174528. [PMID: 38971243 DOI: 10.1016/j.scitotenv.2024.174528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Revised: 06/10/2024] [Accepted: 07/03/2024] [Indexed: 07/08/2024]
Abstract
Soil aggregates are crucial for soil organic carbon (OC) accumulation. This study, utilizing a 32-year fertilization experiment, investigates whether the core microbiome can elucidate variations in carbon content and decomposition across different aggregate sizes more effectively than broader bacterial and fungal community analyses. Employing ensemble learning algorithms that integrate machine learning with network inference, we found that the core microbiome accounts for an average increase of 26 % and 20 % in the explained variance of PCoA and Adonis analyses, respectively, in response to fertilization. Compared to the control, inorganic and organic fertilizers decreased the decomposition index (DDI) by 31 % and 38 %, respectively. The fungal core microbiome predominantly influenced OC content and DDI in larger macroaggregates (>2000 μm), explaining over 35 % of the variance, while the bacterial core microbiome had a lesser impact, explaining <30 %. Conversely, in smaller aggregates (<2000 μm), the bacterial core microbiome significantly influenced DDI (R2 > 0.2), and the fungal core microbiome more strongly affected OC content (R2 > 0.3). Mantel tests showed that pH is the most significant environmental factor affecting core microbiome composition across all aggregate sizes (Mantel's r > 0.8, P < 0.01). Linear correlation analysis further confirmed that the core microbiome's community structure could accurately predict OC content and DDI in aggregates (R2 > 0.8, P < 0.05). Overall, our findings suggested that the core microbiome provides deeper insights into the variability of aggregate organic carbon content and decomposition, with the bacterial core microbiome playing a particularly pivotal role within the soil aggregates.
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Affiliation(s)
- Fengwu Zhou
- Jiangsu Provincial Key Laboratory of Materials Cycling and Pollution Control, School of Geography, Nanjing Normal University, Nanjing 210023, China
| | - Yunbin Jiang
- Jiangsu Provincial Key Laboratory of Materials Cycling and Pollution Control, School of Geography, Nanjing Normal University, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing 210023, China
| | - Cheng Han
- Jiangsu Provincial Key Laboratory of Materials Cycling and Pollution Control, School of Geography, Nanjing Normal University, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing 210023, China
| | - Huan Deng
- Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing 210023, China
| | - Zongren Dai
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China
| | - Zimeng Wang
- Department of Environmental Science and Engineering, Fudan University, Shanghai 200433, China.
| | - Wenhui Zhong
- Jiangsu Provincial Key Laboratory of Materials Cycling and Pollution Control, School of Geography, Nanjing Normal University, Nanjing 210023, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing 210023, China.
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Chiappero MF, Rossetti MR, Moreno ML, Pérez-Harguindeguy N. A global meta-analysis reveals a consistent reduction of soil fauna abundance and richness as a consequence of land use conversion. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:173822. [PMID: 38906293 DOI: 10.1016/j.scitotenv.2024.173822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 06/04/2024] [Accepted: 06/05/2024] [Indexed: 06/23/2024]
Abstract
Land use conversion of natural to production systems is one of the most important threats to belowground communities and to the key ecosystem processes in which they are involved. Available literature shows positive, negative, and neutral effects of land use changes on soil fauna communities; and these varying effects may be due to different characteristics of natural and production systems and soil organisms. We hypothesize that land conversion from high to low plant biomass, diversity, and structural complexity systems may have the most negative impacts on soil fauna. Here, we performed the first meta-analysis evaluating the overall effects of land use conversion on soil invertebrate communities and the influence of factors related to characteristics of natural and production systems, of soil fauna communities and methods. We compiled a dataset of 260 publications that yielded 1732 observations for soil fauna abundance and 459 for richness. Both abundance and richness showed a global decline as a consequence of natural land conversion to production systems. These negative effects were stronger, in general, when the conversion occurred in tropical and subtropical sites, and when natural systems were replaced by croplands, pastures and grazing systems. The effects of land use conversion also depended on soil property changes. In addition, the abundance of most taxa and richness of Acari and Collembola were strongly reduced by land use changes while Annelida were not affected. The highest reduction in abundance was recorded in omnivores and predators, whereas detritivores showed a reduction in richness. Our meta-analysis shows consistent evidence of soil biodiversity decline due to different land use changes and the partial dependence of those effects on the magnitude of changes in vegetation. These findings stress the need to continue developing production modes that effectively preserve soil biodiversity and ecosystem processes, without hampering food production.
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Affiliation(s)
- María Fernanda Chiappero
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET-Universidad Nacional de Córdoba, Argentina
| | - María Rosa Rossetti
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET-Universidad Nacional de Córdoba, Argentina.
| | - María Laura Moreno
- Instituto de Ecorregiones Andinas (INECOA), CONICET - Universidad Nacional de Jujuy, Argentina
| | - Natalia Pérez-Harguindeguy
- Instituto Multidisciplinario de Biología Vegetal (IMBIV), CONICET-Universidad Nacional de Córdoba, Argentina; Departamento de Diversidad Biológica y Ecología, Facultad de Ciencias Exactas, Físicas y Naturales, Universidad Nacional de Córdoba, Argentina
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36
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Reif J, Gamero A, Hološková A, Aunins A, Chodkiewicz T, Hristov I, Kurlavičius P, Leivits M, Szép T, Voříšek P. Accelerated farmland bird population declines in European countries after their recent EU accession. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174281. [PMID: 38936735 DOI: 10.1016/j.scitotenv.2024.174281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Revised: 06/20/2024] [Accepted: 06/23/2024] [Indexed: 06/29/2024]
Abstract
Agricultural intensification is a major driver of global biodiversity loss. In Europe, intensification progressed over the 20th century and was accelerated by instruments of the EU's Common Agricultural Policy. Central and Eastern European (CEE) countries standing outside the EU until the beginning of the 21st century employed less intensive farming and are considered one of the continent's farmland biodiversity strongholds. Their recent EU accession might be either viewed as a threat to farmland biodiversity due to the availability of funds to increase agricultural production or as an opportunity to implement conservation measures aimed to preserve biodiversity. Here we assessed these possibilities using long-term monitoring data on farmland bird populations in seven CEE countries. We tested whether mean relative abundance and population trends changed after countries' EU accession, and whether such changes also occurred in agricultural management and conservation measures. Both agricultural intensity and spending for agri-environmental and climatic schemes increased when the CEE countries joined the EU. At the same time, farmland bird populations started to decline and their relative abundance was lower after than before EU accession. In addition, increases in fertilizer application were negatively associated with annual changes in relative farmland bird population sizes, indicating a negative impact of intensive agriculture. Taken together, these results indicate that despite the great power of the EU's environmental legislation to improve the population status of species at risk, this does not apply to farmland birds. In their case, the adverse impacts of agricultural intensification most likely overrode the possible benefits of conservation measures. To secure this region as one of the continent's farmland biodiversity strongholds, policy and management actions are urgently needed.
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Affiliation(s)
- Jiří Reif
- Institute for Environmental Studies, Faculty of Science, Charles University, Prague, Czechia; Department of Zoology, Faculty of Science, Palacký University, Olomouc, Czechia.
| | - Anna Gamero
- Czech Society for Ornithology/Pan-European Common Bird Monitoring Scheme, Prague, Czechia
| | - Adriana Hološková
- Institute for Environmental Studies, Faculty of Science, Charles University, Prague, Czechia
| | - Ainars Aunins
- Department of Zoology and Animal Ecology, Faculty of Biology, University of Latvia, Jelgavas iela 1, Riga LV-1004, Latvia; Latvian Ornithological Society, Skolas iela 3, Riga LV-1010, Latvia
| | - Tomasz Chodkiewicz
- Museum & Institute of Zoology, Polish Academy of Sciences, Warszawa, Poland; Polish Society for the Protection of Birds (OTOP), Marki, Poland
| | - Iordan Hristov
- Bulgarian Society for the Protection of Birds/BirdLife Bulgaria, Sofia, Bulgaria
| | - Petras Kurlavičius
- Vytautas Magnus University, Kaunas, Lithuania; Lithuanian Ornithological Society (LOD), Vilnius, Lithuania
| | - Meelis Leivits
- Estonian Environment Agency, Nigula Nature Centre, 86107 Reinu village, Estonia
| | - Tibor Szép
- University of Nyíregyháza, Nyíregyháza, Hungary
| | - Petr Voříšek
- Czech Society for Ornithology/European Bird Census Council, Prague, Czechia
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37
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Pharaoh E, Diamond M, Jarvie HP, Ormerod SJ, Rutt G, Vaughan IP. Potential drivers of changing ecological conditions in English and Welsh rivers since 1990. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174369. [PMID: 38955282 DOI: 10.1016/j.scitotenv.2024.174369] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/24/2024] [Accepted: 06/27/2024] [Indexed: 07/04/2024]
Abstract
River invertebrate communities across Europe have been changing in response to variations in water quality over recent decades, but the underlying drivers are difficult to identify because of the complex stressors and environmental heterogeneity involved. Here, using data from ∼4000 locations across England and Wales, collected over 29 years, we use three approaches to help resolve the drivers of spatiotemporal variation in the face of this complexity: i) mapping changes in invertebrate richness and community composition; ii) structural equation modelling (SEM) to distinguish land cover, water quality and climatic influences; and iii) geographically weighted regression (GWR) to identify how the apparent relationships between invertebrate communities and abiotic variables change across the area. Mapping confirmed widespread increases in richness and the proportion of pollution-sensitive taxa across much of England and Wales. It also revealed regions where pollution-sensitive taxa or overall richness declined, the former primarily in the uplands. SEMs confirmed strong increases in average biochemical oxygen demand and nutrient concentrations related to urban and agricultural land cover, but only a minority of land cover's effect upon invertebrate communities was explained by average water chemistry, highlighting potential factors such as episodic extremes or emerging contaminants. GWR identified strong geographical variation in estimated relationships between macroinvertebrate communities and environmental variables, with evidence that the estimated negative impacts of nutrients and water temperature were increasing through time. Overall the results are consistent with widespread biological recovery of Britain's rivers from past gross organic pollution, whilst highlighting declines in some of the most diverse and least impacted streams. Modelling points to a complex and changing set of drivers, highlighting the multifaceted impacts of catchment land cover and the evolving role of different stressors, with the relationship to gross organic pollution weakening, whilst estimated nutrient and warming effects strengthened.
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Affiliation(s)
- Emma Pharaoh
- Water Research Institute and School of Biosciences, Cardiff University, Museum Avenue, Cardiff CF10 3AX, UK
| | - Mark Diamond
- Environment Agency, PO Box 12, Warrington WA4 1HG, UK
| | - Helen P Jarvie
- Water Institute and Department of Geography and Environmental Management, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada; UK Centre for Ecology and Hydrology, Maclean Building, Crowmarsh Gifford, Wallingford OX10 8BB, UK
| | - Steve J Ormerod
- Water Research Institute and School of Biosciences, Cardiff University, Museum Avenue, Cardiff CF10 3AX, UK
| | - Graham Rutt
- Natural Resources Wales, Southwest Area Environmental Assessment & Advice Team, Swansea University, Singleton Campus, Swansea SA2 8PP, UK
| | - Ian P Vaughan
- Water Research Institute and School of Biosciences, Cardiff University, Museum Avenue, Cardiff CF10 3AX, UK.
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38
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Huang L, Jiang L, Zhang Y, Yuan T, Sun Y, Liu C, Lei X, Yuan X, Lian J, Liu S, Huang H. Distribution patterns of reef-building corals in the Northwest Pacific and their environmental drivers. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174429. [PMID: 38960185 DOI: 10.1016/j.scitotenv.2024.174429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 06/27/2024] [Accepted: 06/30/2024] [Indexed: 07/05/2024]
Abstract
Understanding species distribution and the related driving processes is a fundamental issue in ecology. However, incomplete data on reef-building corals in the ecoregions of the South China Sea have hindered a comprehensive understanding of coral distribution patterns and their ecological drivers in the Northwest Pacific (NWP). This study investigated the coral species diversity and distribution patterns in the NWP by collecting species presence/absence data from the South China Sea and compiling an extensive species distribution database for the region, and explored their major environmental drivers. Our NWP coral database included 612 recorded coral species across 15 ecoregions. Of these, 536 coral species were recorded in the South China Sea Oceanic Islands after compilation, confirming the extraordinary coral species diversity in this ecoregion. Coral alpha diversity was found to decrease with increasing latitude in the whole NWP, while the influence of the Kuroshio Current on environmental conditions in its path results in a slower decline in species richness with latitude compared to regions within the South China Sea. Beta-diversity decomposition revealed that nestedness patterns mainly occurred between low and high latitude ecoregions, while communities within similar latitudes exhibited a turnover component, particularly pronounced at high latitudes. The impact of environmental factors on coral assemblage structure outweighed the effects of spatial distance. Temperature, especially winter temperature, and light intensity strongly influenced alpha diversity and beta diversity's nestedness component. Additionally, turbidity and winter temperature variations at high latitudes contributed to the turnover pattern observed among communities in the NWP. These findings elucidate the assembly processes and major environmental drivers shaping different coral communities in the NWP, highlighting the significant role of specific environmental filtering in coral distribution patterns and providing valuable insights for coral species conservation efforts.
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Affiliation(s)
- Lintao Huang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lei Jiang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Yuyang Zhang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Tao Yuan
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Youfang Sun
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Chengyue Liu
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Xinming Lei
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
| | - Xiangcheng Yuan
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
| | - Jiansheng Lian
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Sheng Liu
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
| | - Hui Huang
- CAS Key Laboratory of Tropical Marine Bio-resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China; CAS-HKUST Sanya Joint Laboratory of Marine Science Research, Key Laboratory of Tropical Marine Biotechnology of Hainan Province, Sanya 572000, China; Sanya National Marine Ecosystem Research Station, Tropical Marine Biological Research Station in Hainan, Chinese Academy of Sciences, Sanya 572000, China.
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39
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Kozlov MV, Zverev V. Effects of industrial pollution and ambient air temperature on larval performance and population dynamics of Eriocrania leafminers (Lepidoptera). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174342. [PMID: 38960173 DOI: 10.1016/j.scitotenv.2024.174342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/25/2024] [Accepted: 06/26/2024] [Indexed: 07/05/2024]
Abstract
Pollution is an integral part of global environmental change, yet the combined and interactive effects of pollution and climate on terrestrial ecosystems remain inadequately understood. This study aims to explore whether pollution alters the impacts of ambient air temperature on the population dynamics of herbivorous insects. Between 1995 and 2005, we studied populations of two closely related moths, Eriocrania semipurpurella and E. sangii, at eight sites located 1 to 64 km from a large copper‑nickel smelter in Monchegorsk, Russia. We found that pollution and temperature influence the performance of Eriocrania larvae mining in the leaves of mountain birch, Betula pubescens var. pumila, through multiple pathways. This is evident from the unconsistent changes observed in larval and frass weight, mine area, and leaf size. We found increases in both leaf quality and larval weight with decreasing pollution levels at both spatial and temporal scales and attributed these to the impact of sulphur dioxide, rather than trace elements (nickel and copper). The quality of birch leaves increased with spring (May) temperatures, enabling Eriocrania larvae to achieve greater weight while consuming less biomass. During the larval growth period (early June to early July), Eriocrania larvae increased their consumption with rising temperatures, presumably to compensate for increased metabolic expenses. Contrary to our expectations, the per capita rate of population change did not correlate with larval weight and did not vary along the pollution gradient. Nevertheless, we detected interactive effects of pollution and climate on the rate of population change. This rate decreased with rising winter temperatures in slightly polluted and unpolluted sites but remained unchanged in heavily polluted sites. We conclude that pollution disrupts mechanisms regulating the natural population dynamics of Eriocrania moths.
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Affiliation(s)
- Mikhail V Kozlov
- Department of Biology, University of Turku, FI-20014 Turku, Finland.
| | - Vitali Zverev
- Department of Biology, University of Turku, FI-20014 Turku, Finland
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40
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Duval E, Blanchet S, Quéméré E, Jacquin L, Veyssière C, Loot G. When does a parasite become a disease? eDNA unravels complex host-pathogen dynamics across environmental stress gradients in wild salmonid populations. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174367. [PMID: 38955267 DOI: 10.1016/j.scitotenv.2024.174367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/20/2024] [Accepted: 06/27/2024] [Indexed: 07/04/2024]
Abstract
Infectious diseases stem from disrupted interactions among hosts, parasites, and the environment. Both abiotic and biotic factors can influence infection outcomes by shaping the abundance of a parasite's infective stages, as well as the host's ability to fight infection. However, disentangling these mechanisms within natural ecosystems remains challenging. Here, combining environmental DNA analysis and niche modelling at a regional scale, we uncovered the biotic and abiotic drivers of an infectious disease of salmonid fish, triggered by the parasite Tetracapsuloides bryosalmonae. We found that the occurrence and abundance of the parasite in the water-i.e., the propagule pressure- were mainly correlated to the abundances of its two primary hosts, the bryozoan Fredericella sultana and the fish Salmo trutta, but poorly to local abiotic environmental stressors. In contrast, the occurrence and abundance of parasites within fish hosts-i.e., proxies for disease emergence-were closely linked to environmental stressors (water temperature, agricultural activities, dams), and to a lesser extent to parasite propagule pressure. These results suggest that pathogen distribution alone cannot predict the risk of disease in wildlife, and that local anthropogenic stressors may play a pivotal role in disease emergence among wild host populations, likely by modulating the hosts' immune response. Our study sheds light on the intricate interplay between biotic and abiotic factors in shaping pathogen distribution and raises concerns about the effects of global change on pathogen emergence.
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Affiliation(s)
- Eloïse Duval
- Bureau d'études Fish-Pass, 18 rue de la plaine, 35890 Laillé, France.
| | - Simon Blanchet
- CNRS, Station d'Écologie Théorique et Expérimentale du CNRS, UAR-2029, 2 route du CNRS, F-09200 Moulis, France.
| | - Erwan Quéméré
- DECOD (Ecosystem Dynamics and Sustainability), INRAE, Institut Agro, IFREMER, 65 rue de Saint Brieuc F-35042, Rennes, France
| | - Lisa Jacquin
- Université Toulouse III Paul Sabatier, CNRS, IRD, UMR-5300 CRBE (Centre de Recherche sur la Biodiversité et l'Environnement), 118 route de Narbonne, F-31062 Toulouse, France; Institut Universitaire de France, Paris, France
| | - Charlotte Veyssière
- Université Toulouse III Paul Sabatier, CNRS, IRD, UMR-5300 CRBE (Centre de Recherche sur la Biodiversité et l'Environnement), 118 route de Narbonne, F-31062 Toulouse, France
| | - Géraldine Loot
- Université Toulouse III Paul Sabatier, CNRS, IRD, UMR-5300 CRBE (Centre de Recherche sur la Biodiversité et l'Environnement), 118 route de Narbonne, F-31062 Toulouse, France; Institut Universitaire de France, Paris, France
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41
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Bastos JR, Capellesso ES, Marcilio-Silva V, Zwiener VP, Vibrans AC, Marques MCM. Mixed effects of climate and species richness on aboveground carbon stock in subtropical Atlantic forests. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:174156. [PMID: 38909803 DOI: 10.1016/j.scitotenv.2024.174156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Revised: 06/18/2024] [Accepted: 06/18/2024] [Indexed: 06/25/2024]
Abstract
Tropical forests are global biodiversity hotspots and are crucial in the global carbon (C) cycle. Understanding the drivers of aboveground carbon stock (AGC) in a heterogeneous and biodiverse system can shed light on the processes underlying the relationship between biodiversity and carbon accumulation. Here, we investigate how biodiversity, environment, and landscape structure affect AGC. We examined such associations in 349 plots comprising over 95,346 km2 the Atlantic Forest of southern Brazil, encompassing three forest types: Dense Ombrophylous Forest (DF), Mixed Ombrophylous Forest (MF), and Seasonal Deciduous Forest (SF). Each plot was described by environmental variables, landscape metrics, and biodiversity (species richness and functional diversity). We used diversity, environmental, and landscape variables to build generalized linear mixed models and understand which can affect the forest AGC. We found that species richness is associated positively with AGC in all forest types, combined and separately. Seasonal temperature and isothermality affect AGC in all forest types; additionally, stocks are positively influenced by annual precipitation in SF and isothermality in MF. Among landscape metrics, total fragment edge negatively affects carbon stocks in MF. Our results show the importance of species diversity for carbon stocks in subtropical forests. The climate effect was also relevant, showing the importance of these factors, especially in a world where climate change tends to affect forest stock capacity negatively.
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Affiliation(s)
- Júlio R Bastos
- Laboratório de Ecologia Vegetal, Departamento de Botânica, Setor de Ciências Biológicas, Universidade Federal do Paraná, Caixa Postal 19031, 81531-980 Curitiba, PR, Brazil.
| | - Elivane S Capellesso
- Laboratório de Ecologia Vegetal, Departamento de Botânica, Setor de Ciências Biológicas, Universidade Federal do Paraná, Caixa Postal 19031, 81531-980 Curitiba, PR, Brazil
| | | | - Victor P Zwiener
- Laboratório de Ecologia e Biogeografia de Plantas, Departamento de Biodiversidade, Setor Palotina, Universidade Federal do Paraná, 2153, 85950-000 Palotina, PR, Brazil
| | - Alexander C Vibrans
- Departamento de Engenharia Florestal, Universidade Regional de Blumenau, Rua São Paulo, 3250, 89030-000 Blumenau, SC, Brazil
| | - Márcia C M Marques
- Laboratório de Ecologia Vegetal, Departamento de Botânica, Setor de Ciências Biológicas, Universidade Federal do Paraná, Caixa Postal 19031, 81531-980 Curitiba, PR, Brazil
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42
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Fox JT, Magoulick DD. Fish beta diversity associated with hydrologic and anthropogenic disturbance gradients in contrasting stream flow regimes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:173825. [PMID: 38857792 DOI: 10.1016/j.scitotenv.2024.173825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 06/01/2024] [Accepted: 06/05/2024] [Indexed: 06/12/2024]
Abstract
Understanding the role of hydrologic variation in structuring aquatic communities is crucial for successful conservation and sustainable management of native freshwater biodiversity. Partitioning beta diversity into the additive components of spatial turnover and nestedness can provide insight into the forces driving variability in fish assemblages across stream flow regimes. We examined stream fish beta diversity across hydrologic and anthropogenic disturbance gradients using long-term (1916-2016) site occurrence records (n = 17,375) encompassing 252 species. We assessed total beta diversity (Sørensen dissimilarity), spatial turnover, and nestedness of fish assemblages in contrasting stream flow regimes across a gradient of decreasing flow stability: groundwater stable (n = 77), groundwater (n = 67), groundwater flashy (n = 175), perennial runoff (n = 141), runoff flashy (n = 255), and intermittent (n = 63) streams. Differences in total beta diversity among the stream flow regimes were driven predominantly (>86 %) by spatial turnover (i.e. species replacement) as opposed to nestedness (i.e. species loss or gain). Total fish beta diversity and spatial turnover were highest in streams with intermediate flow stability (groundwater flashy), while more flow-stable streams (groundwater stable and groundwater) had lower turnover and higher nestedness. Species turnover was also strongly associated with seasonal variation in hydrology across all flow regimes, but these relationships were most evident for assemblages in intermittent streams. Distance-based statistical comparisons showed significant correlations between beta diversity and anthropogenic disturbance variables, including dam density, dam storage volume and water withdrawals in catchments of groundwater stable streams, while hydrologic variables were more strongly correlated with beta diversity in streams with runoff-dominated and flashy flow regimes. The high spatial turnover of species implies that fish conservation actions would benefit from watershed-focused approaches targeting multiple streams with wide spatial distribution, as opposed to simply focusing on preserving sites with the greatest number of species.
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Affiliation(s)
- J Tyler Fox
- Arkansas Cooperative and Wildlife Research Unit, Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA.
| | - Daniel D Magoulick
- U.S. Geological Survey, Arkansas Cooperative Fish and Wildlife Research Unit, Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA
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Yang K, Zhang Z, Tang M, Ren Y, Hu J, Zhen Q, Zheng J. Seabuckthorn (Hippophae rhamnoides L.) plantation degradation aggravates microbial metabolic C and P limitations on the Northern Loess Plateau in China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:174088. [PMID: 38908587 DOI: 10.1016/j.scitotenv.2024.174088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Revised: 06/11/2024] [Accepted: 06/16/2024] [Indexed: 06/24/2024]
Abstract
Vegetation degradation in arid and semi-arid regions reduces plant C inputs to the soil, which can impede soil nutrient cycling because of the limited C source for microbial metabolism. However, whether vegetation degradation aggravates microbial nutrient limitation in degraded ecosystems in arid and semi-arid regions is not fully understood. Here, we investigated changes in soil enzyme activity and microbial nutrient limitation along a well-documented gradient of degraded seabuckthorn (Hippophae rhamnoides L.) (slightly degraded, canopy dieback <25 %, moderately degraded, canopy dieback 25 %-75 %, and severely degraded, canopy dieback >75 %) in Liang (long ridge) and gully channel locations in the Pisha Sandstone region of the Loess Plateau, China. We found that as the magnitude of seabuckthorn degradation increased, activities of C-acquiring enzymes and ratios of C:N and C:P enzymes (0.54-0.80 and 0.52-0.77, respectively) increased whereas the N:P enzyme ratio (0.93-0.99) decreased. Stoichiometric modelling further indicated that microorganisms were limited by soil C and P (vector angle >45°) in the seabuckthorn plantation region, and the degradation of seabuckthorn plantation aggravated microbial C and P limitations. Partial least squares path modelling revealed that seabuckthorn degradation (canopy dieback) was the main factor explaining microbial C limitation variations, while soil physicochemical properties (pH and soil moisture content) and understory plant parameters (litter biomass) were the major factors underlying microbial P limitation of long ridge and gully channel formations, respectively. Our findings highlight synergistic changes between aboveground and belowground processes, suggesting an unexpected negative effect of vegetation degradation on soil microbial community and nutrient cycling. These insights offer a direction for the development of plantation nutrients management strategies in semi-arid and arid areas.
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Affiliation(s)
- Kaiqi Yang
- College of Natural Resources and Environment/State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A & F University, Yangling 712100, China
| | - Zhiao Zhang
- College of Natural Resources and Environment/State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A & F University, Yangling 712100, China
| | - Mei Tang
- College of Natural Resources and Environment/State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A & F University, Yangling 712100, China
| | - Yunzhuo Ren
- College of Natural Resources and Environment/State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A & F University, Yangling 712100, China
| | - Jian Hu
- College of Natural Resources and Environment/State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A & F University, Yangling 712100, China
| | - Qing Zhen
- College of Natural Resources and Environment/State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A & F University, Yangling 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resource, Yangling 712100, China.
| | - Jiyong Zheng
- College of Natural Resources and Environment/State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A & F University, Yangling 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resource, Yangling 712100, China
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Wang X, Cheng J, Zhang J, Chen F. Influences of crop diversification on yield, resource use efficiency, and environmental footprint in farmland landscapes in intensive farming. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:174009. [PMID: 38901579 DOI: 10.1016/j.scitotenv.2024.174009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Revised: 05/14/2024] [Accepted: 06/11/2024] [Indexed: 06/22/2024]
Abstract
Enhancing crop diversification in intensive fields has the potential to increase crop yield and reduce environmental footprint. However, these relationships at the landscape scale remained unclear in intensive farming. Addressing this gap, this paper aims to elucidate how crop yield, resources use efficiency (RUE), and environmental footprint (EF) vary with crop diversification levels in the North China Plain. Management practices, including crop pattern, field size, and agronomic inputs, were collected for 421 landscapes of 1 × 1 km subplots using Sentinel-2 and Landsat-8 images and survey. The results showed that, at the landscape scale, energy and fertilizer contributed over 53 %, and 37 % of the carbon footprint, respectively. N fertilizer constituted >98 % of the nitrogen footprint. P fertilizer accounted for over 80 %, while electricity comprised >13 % of the phosphorus footprint. Compared with simplified landscapes, diversified landscapes exhibited several significant features: 1) 56 % reduction of the area ratio of winter wheat-summer maize double crop pattern (WM), 2) a significant decrease in field size, 3) the decreased use of total NPK fertilizers at 32 %, 30 %, and 30 %, respectively, 4) the increased inputs of irrigation water, diesel, electricity, pesticide and labour at 21 %, 19 %, 21 %, 77 %, and 92 %, respectively. Although yield could be reduced at 33 % when transforming simplified landscapes into moderately diversified ones, they increased with the further promotion of crop diversification. Thus, the diversified landscapes could achieve a balance in yield, RUE, and EF to enhance sustainability, whereas simplified landscapes can similarly achieve a balance to benefit productivity. We emphasize the viable potential of diversified landscapes to enhance sustainable agricultural development by optimizing crop composition. This analysis offers pioneering evidence of landscape-scale agronomic and environmental performances of crop diversification.
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Affiliation(s)
- Xiaohui Wang
- College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; School of Biology and Agriculture, Shaoguan University, Shaoguan, 512005, China; Key Labouratory of Farming System, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing 100193, China.
| | - Jiali Cheng
- Key Labouratory of Farming System, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing 100193, China
| | - Jiaen Zhang
- Guangdong Provincial Key Labouratory of Eco-circular Agriculture, South China Agricultural University, Guangzhou 510642, China
| | - Fu Chen
- Key Labouratory of Farming System, Ministry of Agriculture and Rural Affairs, China Agricultural University, Beijing 100193, China.
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Zhang L, Zhang G, Shi Z, He M, Ma D, Liu J. Effects of polypropylene micro(nano)plastics on soil bacterial and fungal community assembly in saline-alkaline wetlands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:173890. [PMID: 38885717 DOI: 10.1016/j.scitotenv.2024.173890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2024] [Revised: 05/31/2024] [Accepted: 06/08/2024] [Indexed: 06/20/2024]
Abstract
Microplastic pollution is a major environmental threat, especially to terrestrial ecosystems. To better understand the effects of microplastics on soil microbiota, the influence of micro- to nano-scale polypropylene plastics was investigated on microbial community diversity, functionality, co-occurrence, assembly, and their interaction with soil-plant using high-throughput sequencing approaches and multivariate analyses. The results showed that polypropylene micro/nano-plastics mainly reduced bacterial diversity, not fungal, and that plastic size had a stronger effect than concentration on the assembly of microbial communities. Nano-plastics decreased the complexity and connectivity of both bacterial and fungal networks compared to micro-plastics. Moreover, bacteria were more sensitive and deterministic to polypropylene micro/nano-plastic stress than fungi, as shown by their different growth rates, guanine-cytosine content, and cell structure. Interestingly, the dominant ecological process for bacteria shifted from stochastic drift to deterministic selection with polypropylene micro/nano-plastic exposure. Furthermore, nano-plastics directly or indirectly disrupted the interactions within intra-microbes and between soil-bacteria-plant by altering soil nutrients and stoichiometry (C:N:P) or plant diversity. Collectively, the results indicate that polypropylene nano-plastics pose more ecological risks to soil microbes and their plant-soil interactions. This study sheds light on the potential ecological consequences of polypropylene micro/nano-plastic pollution in terrestrial ecosystems.
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Affiliation(s)
- Lan Zhang
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, Center for Grassland Microbiome, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China
| | - Guorui Zhang
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, Center for Grassland Microbiome, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China
| | - Ziyue Shi
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, Center for Grassland Microbiome, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China
| | - Mengxuan He
- School of Geographic and Environmental Science, Tianjin Key Laboratory of Water Resources and Environment, Tianjin Normal University, Tianjin 300387, China..
| | - Dan Ma
- School of Life Sciences, Institute of Life Science and Green Development, Hebei University, Baoding, 071002, Hebei, China
| | - Jie Liu
- State Key Laboratory of Herbage Improvement and Grassland Agro-ecosystems, Center for Grassland Microbiome, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou 730020, China.
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Shen C, Yan R, Lu B, Li Z, Zhang R, Zhang D, Wang C. Dissimilarity of megabenthic community structure between deep-water seamounts with cobalt-rich crusts: Case study in the northwestern Pacific Ocean. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:173914. [PMID: 38885715 DOI: 10.1016/j.scitotenv.2024.173914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2024] [Revised: 05/15/2024] [Accepted: 06/08/2024] [Indexed: 06/20/2024]
Abstract
As anthropogenic disturbance on deep-sea seamount ecosystems grows, there is an urgent need for a better understanding of the biodiversity and community structure in benthic ecosystems, which can vary at local and regional scales. A survey of the benthic megafauna on two adjacent deep-water seamounts in the northwestern Pacific Ocean was conducted, which are covered by cobalt-rich crusts, to assess the biodiversity patterns and dissimilarity of assemblage composition. Based on a multidisciplinary dataset generated from video recordings, multibeam bathymetry data, and near-bottom currents, environmental and spatial factors impacting the megabenthic communities were explored. Results showed that these two deep-water seamounts were dominated by hexactinellids, crinoids, and octocorals. The seamounts were able to support diverse and moderately abundant megafauna, with a total of 6436 individuals classified into 94 morphospecies. The survey covered a distance of 52.2 km across a depth range of 1421-3335 m, revealing multiple distinct megabenthic assemblages. The megabenthic communities of the two deep-water seamounts, with comparable environmental conditions, exhibited similarities in overall density, richness, and faunal lists, while dissimilarities in the relative abundance of taxa and assemblage composition. No gradual depth-related change in terms of abundance, richness, or species turnover was observed across the two seamounts, despite the statistical significance of depth in structuring the overall communities. The spatial distribution of megabenthic communities displayed a discontinuous and patchy pattern throughout the two deep-water seamounts. This patchiness was driven by the interactive effects of multiple environmental factors. Near-bottom currents and microhabitat features were the primary drivers influencing their dissimilarities in megabenthic community structure. This case study on the megabenthic community structure of two adjacent seamounts with cobalt-rich crusts can serve as an environmental baseline, providing a reference status for the conservation and management of seamount ecosystems, particularly valuable for areas being considered for deep-sea mining.
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Affiliation(s)
- Chengcheng Shen
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China; Laoshan Laboratory, Qingdao 266237, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
| | - Runxuan Yan
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China; College of Oceanography, Hohai University, Nanjing 210098, China
| | - Bo Lu
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
| | - Zhenggang Li
- Key Laboratory of Submarine Geosciences, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
| | - Ruiyan Zhang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China
| | - Dongsheng Zhang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China; School of Oceanography, Shanghai Jiao Tong University, Shanghai 200240, China.
| | - Chunsheng Wang
- Key Laboratory of Marine Ecosystem Dynamics, Second Institute of Oceanography, Ministry of Natural Resources, Hangzhou 310012, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China; College of Oceanography, Hohai University, Nanjing 210098, China; School of Oceanography, Shanghai Jiao Tong University, Shanghai 200240, China.
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Tan M, Hall KC, Litchfield S, Champion C, de Carvalho MC, Mos B, Dworjanyn S, Kelaher BP. Water temperature affects somatic growth, body condition and oxygen and carbon otolith isotopes of stout whiting (Sillago robusta). THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:174058. [PMID: 38897478 DOI: 10.1016/j.scitotenv.2024.174058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 05/22/2024] [Accepted: 06/14/2024] [Indexed: 06/21/2024]
Abstract
Ocean warming will continue to affect the growth, body condition and geographic distributions of marine fishes and understanding these effects is an urgent challenge for fisheries research and management. Determining how temperature is recorded in fish otolith carbonate, provides an additional chronological tool to investigate thermal histories, preferences and patterns of movement throughout an individual's life history. The influence of three water temperature treatments (22°C, 25°C, and 28°C) on hatchery-reared juvenile stout whiting, Sillago robusta, was tested using a controlled outdoor mesocosm system. Fish were measured for change in length and weight, and body condition was determined using bioelectrical impedance analysis. Sagittal otoliths were analysed for stable oxygen (δ18Ootolith) and carbon (δ13Cotolith) isotopes via isotope ratio mass spectrometry. Whiting kept at 22°C were significantly smaller and had diminished body condition compared to fish in 25°C and 28°C, which did not significantly differ from each other. The δ18O otolith values of stout whiting demonstrated a negative temperature-dependent fractionation relationship which was similar in slope but had a different intercept to the relationships reported for inorganic aragonite and other marine fish species. The δ13C otolith values also showed a negative relationship with water temperature, and the calculated proportion of metabolic carbon M in otoliths differed between fish reared in the coolest (22°C) and warmest (28°C) temperature treatments. Overall, the results suggest that stout whiting may have reached an upper growth threshold between 25°C and 28°C, and that growth and body condition may be optimised during warmer seasons and toward the northerly regions of their distribution. Otolith oxygen thermometry shows promise as a natural tracer of thermal life history, and species-specific fractionation equations should be utilised when possible to prevent errors in temperature reconstructions of wild-caught fish.
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Affiliation(s)
- Melissa Tan
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia.
| | - Karina C Hall
- Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Sebastian Litchfield
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Curtis Champion
- Fisheries Research, NSW Department of Primary Industries, National Marine Science Centre, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Matheus Carvalho de Carvalho
- Southern Cross Analytical Research Services, Centre for Coastal Biogeochemistry - IRMS laboratory, Military Rd, East Lismore, New South Wales 2480, Australia
| | - Benjamin Mos
- Moreton Bay Research Station, School of the Environment, The University of Queensland, Dunwich/Goompi, QLD 4183, Australia; Centre for Marine Science, The University of Queensland, Brisbane, QLD 4072, Australia
| | - Symon Dworjanyn
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
| | - Brendan P Kelaher
- National Marine Science Centre, Southern Cross University, 2 Bay Dr, Coffs Harbour, New South Wales 2450, Australia
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48
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Shahzad K, Alatalo JM, Zhu M, Cao L, Hao Y, Dai J. Geographic conditions impact the relationship between plant phenology and phylogeny. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:174083. [PMID: 38906301 DOI: 10.1016/j.scitotenv.2024.174083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2024] [Revised: 06/12/2024] [Accepted: 06/15/2024] [Indexed: 06/23/2024]
Abstract
Plant phenology is influenced by a combined effect of phylogeny and climate, although it is yet unclear how these two variables work together to change phenology. We synthesized 107 previously published studies to examine whether phenological changes were impacted by both phylogeny and climate changes in various geographical settings globally. Phenological observation data from 52,463 plant species at 71 sites worldwide revealed that 90 % of phenological records showed phylogenetic conservation. i.e., closely related species exhibited similar phenology. To explore the significant and non-significant phylogenetic conservation between plant phenophases, our dataset comprises 5,47,000 observation records from the four main phenophases (leaf bud, leaf, flower, and fruit). Three-dimensional geographical distribution (altitude, latitude, and longitude) data analysis revealed that plant phenology may exhibit phylogenetic signals at finer special scales (optimal environmental conditions) that vanish in high altitude and latitude regions. Additionally, climatic sensitivity analysis suggested that phylogenetic signals were associated with plant phenophases and were stronger in the regions of ideal temperature (7-18 °C) and photoperiod (10-14 h) and weaker in harsh climatic conditions. These results show that phylogenetic conservation in plant phenological traits is frequently influenced by the interaction of harsh climatic conditions and geographical ranges. This meta-analysis enhances our knowledge of predicting species responses over geographic gradients under varied climatic conditions.
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Affiliation(s)
- Khurram Shahzad
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, CAS, Beijing 100101, China; Nebraska Food for Health Center, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA.
| | | | - Mengyao Zhu
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, CAS, Beijing 100101, China
| | - Lijuan Cao
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, CAS, Beijing 100101, China
| | - Yulong Hao
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, CAS, Beijing 100101, China
| | - Junhu Dai
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, CAS, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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49
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Gonzalez JF, Sánchez-Carnero N, Frere E, Yorio P, Ciancio JE. Developing δ 15N and δ 13C isoscapes using whole blood from Magellanic penguins, Spheniscus magellanicus. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2024; 38:e9860. [PMID: 38989637 DOI: 10.1002/rcm.9860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Revised: 06/12/2024] [Accepted: 06/15/2024] [Indexed: 07/12/2024]
Abstract
RATIONALE Understanding the migration of marine animals is hindered by the limitations of traditional tracking methods. It is therefore crucial to develop alternative methods. Stable isotope-based tracking has proven useful for this task, although it requires detailed isoscapes in the focal area. Here, we present predator-based isoscapes of the coastal zone of the Patagonian Shelf Large Marine Ecosystem (PSLME), which offers a novel tool for geolocation. METHODS Whole-blood samples from breeding Magellanic penguins nesting at 11 colonies were used to create δ15N and δ13C isoscapes. Isotopic values were assigned to random positions inside their corresponding foraging area. Spatial analysis and data interpolation resulted in δ15N and δ13C isoscapes for the coastal zone of the PSLME, which were validated through cross-validation. RESULTS The isoscapes mean standard error ranged from 0.05 to 0.41 for δ15N and from 0.07 to 0.3 for δ13C, similar to the error range of the mass spectrometer used for measuring isotope ratios. Predictive surfaces reflected the latitudinal trends, with δ13C and δ15N values increasing northwards. δ13C values showed a strong latitudinal gradient, while δ15N values had two distinct domains, with higher values in the north. The error surface indicated the highest certainty within 130 km from the shore and within the reported Magellanic penguin foraging areas. CONCLUSIONS Both isoscapes revealed strong spatial variation. The δ13C isoscape showed a latitudinal gradient, consistent with patterns in other oceans. The δ15N isoscape clearly separated northern and southern colonies, likely influenced by nitrogen sources. The error obtained fell within the measurement error ranges, adding credibility to the models.
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Affiliation(s)
- Juliana F Gonzalez
- Centro Regional Universitario Patagónico, Universidad Nacional del Comahue, San Carlos de Bariloche, Río Negro, Argentina
| | - Noela Sánchez-Carnero
- CESIMAR Centro Nacional Patagónico-CONICET, Puerto Madryn, Chubut, Argentina
- Grupo de Oceanografía Física y Centro de Investigación Mariña, Universidade de Vigo, Vigo, Spain
| | - Esteban Frere
- Centro de Investigaciones Puerto Deseado UNPA CP, CONICET, Buenos Aires, Argentina
- Wildlife Conservation Society Argentina, Ciudad Autónoma de Buenos Aires, Argentina
| | - Pablo Yorio
- CESIMAR Centro Nacional Patagónico-CONICET, Puerto Madryn, Chubut, Argentina
- Wildlife Conservation Society Argentina, Ciudad Autónoma de Buenos Aires, Argentina
| | - Javier E Ciancio
- CESIMAR Centro Nacional Patagónico-CONICET, Puerto Madryn, Chubut, Argentina
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50
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Dong Y, Van de Maele M, De Meester L, Verheyen J, Stoks R. Pollution offsets the rapid evolution of increased heat tolerance in a natural population. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 944:173070. [PMID: 38734087 DOI: 10.1016/j.scitotenv.2024.173070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 04/08/2024] [Accepted: 05/06/2024] [Indexed: 05/13/2024]
Abstract
Despite the increasing evidence for rapid thermal evolution in natural populations, evolutionary rescue under global warming may be constrained by the presence of other stressors. Highly relevant in our polluted planet, is the largely ignored evolutionary trade-off between heat tolerance and tolerance to pollutants. By using two subpopulations (separated 40 years in time) from a resurrected natural population of the water flea Daphnia magna that experienced a threefold increase in heat wave frequency during this period, we tested whether rapid evolution of heat tolerance resulted in reduced tolerance to the widespread metal zinc and whether this would affect heat tolerance upon exposure to the pollutant. Our results revealed rapid evolution of increased heat tolerance in the recent subpopulation. Notably, the sensitivity to the metal tended to be stronger (reduction in net energy budget) or was only present (reductions in heat tolerance and in sugar content) in the recent subpopulation. As a result, the rapidly evolved higher heat tolerance of the recent subpopulation was fully offset when exposed to zinc. Our results highlight that the many reports of evolutionary rescue to global change stressors may give a too optimistic view as our warming planet is polluted by metals and other pollutants.
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Affiliation(s)
- Ying Dong
- Evolutionary Stress Ecology and Ecotoxicology, University of Leuven, Charles Debériotstraat 32, B-3000 Leuven, Belgium
| | - Marlies Van de Maele
- Evolutionary Stress Ecology and Ecotoxicology, University of Leuven, Charles Debériotstraat 32, B-3000 Leuven, Belgium
| | - Luc De Meester
- Freshwater Ecology, Evolution and Biodiversity Conservation, University of Leuven, Charles Debériotstraat 32, B-3000 Leuven, Belgium; Leibniz Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany; Institute of Biology, Freie Universitat Berlin, Berlin, Germany
| | - Julie Verheyen
- Evolutionary Stress Ecology and Ecotoxicology, University of Leuven, Charles Debériotstraat 32, B-3000 Leuven, Belgium
| | - Robby Stoks
- Evolutionary Stress Ecology and Ecotoxicology, University of Leuven, Charles Debériotstraat 32, B-3000 Leuven, Belgium.
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