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Number Cited by Other Article(s)
1
Mastrorilli V, Farioli-Vecchioli S. p21 as an essential regulator of neurogenic homeostasis in neuropathological conditions. Neural Regen Res 2026;21:675-676. [PMID: 39820329 DOI: 10.4103/nrr.nrr-d-24-01255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Accepted: 12/02/2024] [Indexed: 01/19/2025]  Open
2
Lewis EM, Becker O, Symons AN, LaCoss C, Baclig AJ, Guzman A, Sanders C, Gonzalez L, Warner LR, Lewis KA. The LARP6 La module from Tetrabaena socialis reveals structural and functional differences from plant and animal LARP6 homologues. RNA Biol 2025;22:1-9. [PMID: 40181506 PMCID: PMC11988235 DOI: 10.1080/15476286.2025.2489303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 02/06/2025] [Accepted: 03/26/2025] [Indexed: 04/05/2025]  Open
3
Nair A, Khanna J, Kler J, Ragesh R, Sengupta K. Nuclear envelope and chromatin choreography direct cellular differentiation. Nucleus 2025;16:2449520. [PMID: 39943681 PMCID: PMC11834525 DOI: 10.1080/19491034.2024.2449520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 12/28/2024] [Accepted: 12/30/2024] [Indexed: 02/20/2025]  Open
4
Marcela K, Vojtech K, Marie B, Fanny D, Jaroslava Z, Suhanya P, Anna S, Elena N, Hanna P, Ed K, Wiep Klaas S, Gabriela BN. Genomic islands and molecular mechanisms relating to drug-resistance in Clostridioides (Clostridium) difficile PCR ribotype 176. Emerg Microbes Infect 2025;14:2482698. [PMID: 40130321 PMCID: PMC11983580 DOI: 10.1080/22221751.2025.2482698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Revised: 03/03/2025] [Accepted: 03/17/2025] [Indexed: 03/26/2025]
5
Nguyen TD, Winek MA, Rao MK, Dhyani SP, Lee MY. Nuclear envelope components in vascular mechanotransduction: emerging roles in vascular health and disease. Nucleus 2025;16:2453752. [PMID: 39827403 DOI: 10.1080/19491034.2025.2453752] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 01/08/2025] [Accepted: 01/09/2025] [Indexed: 01/22/2025]  Open
6
Xu Z, Asakawa S. Release and degradation of dissolved environmental RNAs from zebrafish cells. RNA Biol 2025;22:1-12. [PMID: 40167163 PMCID: PMC12026185 DOI: 10.1080/15476286.2025.2486281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2024] [Revised: 02/27/2025] [Accepted: 03/21/2025] [Indexed: 04/02/2025]  Open
7
Kim H, Bell T, Lee K, Jeong J, Bardwell JCA, Lee C. Identification of host genetic factors modulating β-lactam resistance in Escherichia coli harbouring plasmid-borne β-lactamase through transposon-sequencing. Emerg Microbes Infect 2025;14:2493921. [PMID: 40231449 PMCID: PMC12024506 DOI: 10.1080/22221751.2025.2493921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 03/28/2025] [Accepted: 04/11/2025] [Indexed: 04/16/2025]
8
Sall I, Foxall R, Felth L, Maret S, Rosa Z, Gaur A, Calawa J, Pavlik N, Whistler JL, Whistler CA. Gut dysbiosis was inevitable, but tolerance was not: temporal responses of the murine microbiota that maintain its capacity for butyrate production correlate with sustained antinociception to chronic morphine. Gut Microbes 2025;17:2446423. [PMID: 39800714 PMCID: PMC11730370 DOI: 10.1080/19490976.2024.2446423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 11/24/2024] [Accepted: 12/18/2024] [Indexed: 01/16/2025]  Open
9
Boukili M, Zmerli O, Fenollar F, Bellali S, Bou Khalil J. Tips and tricks for gut microbiota investigation using scanning electron microscopy (SEM): going from sample preparation to imaging and landscape analysis. Gut Microbes 2025;17:2512016. [PMID: 40491126 DOI: 10.1080/19490976.2025.2512016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/26/2025] [Revised: 05/19/2025] [Accepted: 05/22/2025] [Indexed: 06/11/2025]  Open
10
Hartasánchez DA, Dumond M, Dubrulle N, Monéger F, Boudaoud A. Highly expressed cell wall genes contribute to robustness of sepal size. PLANT SIGNALING & BEHAVIOR 2025;20:2446858. [PMID: 39739543 DOI: 10.1080/15592324.2024.2446858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Revised: 12/18/2024] [Accepted: 12/19/2024] [Indexed: 01/02/2025]
11
Chang TM, Fang WY, Hsu HP, Chu PY, Jiang SS, Huang KW, Hung WC, Lin HY, Tsai HJ. PCK2 promotes invasion and epithelial-to-mesenchymal transition in triple-negative breast cancer by promoting TGF-β/SMAD3 signaling through inhibiting TRIM67-mediated SMAD3 ubiquitination. Cancer Biol Ther 2025;26:2478670. [PMID: 40081967 PMCID: PMC11913380 DOI: 10.1080/15384047.2025.2478670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2024] [Revised: 01/22/2025] [Accepted: 03/07/2025] [Indexed: 03/16/2025]  Open
12
Boulund U, Thorsen J, Trivedi U, Tranæs K, Jiang J, Shah SA, Stokholm J. The role of the early-life gut microbiome in childhood asthma. Gut Microbes 2025;17:2457489. [PMID: 39882630 PMCID: PMC11784655 DOI: 10.1080/19490976.2025.2457489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Revised: 12/05/2024] [Accepted: 01/17/2025] [Indexed: 01/31/2025]  Open
13
Zheng XQ, Wang DB, Jiang YR, Song CL. Gut microbiota and microbial metabolites for osteoporosis. Gut Microbes 2025;17:2437247. [PMID: 39690861 DOI: 10.1080/19490976.2024.2437247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Revised: 11/13/2024] [Accepted: 11/26/2024] [Indexed: 12/19/2024]  Open
14
Park JH, Cho YR. Draw+: network-based computational drug repositioning with attention walking and noise filtering. Health Inf Sci Syst 2025;13:14. [PMID: 39764174 PMCID: PMC11700073 DOI: 10.1007/s13755-024-00326-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Accepted: 12/11/2024] [Indexed: 02/02/2025]  Open
15
Su F, Su M, Wei W, Wu J, Chen L, Sun X, Liu M, Sun S, Mao R, Bourgonje AR, Hu S. Integrating multi-omics data to reveal the host-microbiota interactome in inflammatory bowel disease. Gut Microbes 2025;17:2476570. [PMID: 40063366 PMCID: PMC11901428 DOI: 10.1080/19490976.2025.2476570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Revised: 02/14/2025] [Accepted: 03/03/2025] [Indexed: 03/14/2025]  Open
16
Watkins L, Li M, Wu B. Translation elongation: measurements and applications. RNA Biol 2025;22:1-10. [PMID: 40377059 PMCID: PMC12087489 DOI: 10.1080/15476286.2025.2504727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Revised: 04/22/2025] [Accepted: 05/06/2025] [Indexed: 05/18/2025]  Open
17
Li Y, Bai R, Zhu Y, Shi P, Wang T, Zhou D, Zhou J, Zhu T, Zhang X, Gu R, Ding X, Chen H, Wang X, Zhu Z. Genetic variation in gut microbe as a key regulator of host social behavior in C. elegans. Gut Microbes 2025;17:2490828. [PMID: 40223740 PMCID: PMC12005443 DOI: 10.1080/19490976.2025.2490828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2025] [Revised: 02/25/2025] [Accepted: 03/25/2025] [Indexed: 04/15/2025]  Open
18
Schlicht K, Pape L, Rohmann N, Knappe C, Epe J, Geisler C, Pohlschneider D, Brodesser S, Kruse L, Rohlfing ME, Hartmann K, Türk K, Marquardt J, Beckmann J, von Schönfels W, Beckmann A, Wietzke-Braun P, Schulte DM, Hollstein T, Demetrowitsch T, Jensen-Kroll J, Brix F, Schreiber S, Franke A, Schwarz K, Waschina S, Laudes M. Prediabetes and type 2 diabetes but not obesity are associated with alterations in bile acid related gut microbe-microbe and gut microbe-host community metabolism. Gut Microbes 2025;17:2474143. [PMID: 40045464 PMCID: PMC11901388 DOI: 10.1080/19490976.2025.2474143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 01/20/2025] [Accepted: 02/25/2025] [Indexed: 03/14/2025]  Open
19
Famà V, Coscujuela Tarrero L, Albanese R, Calviello L, Biffo S, Pelizzola M, Furlan M. Coupling mechanisms coordinating mRNA translation with stages of the mRNA lifecycle. RNA Biol 2025;22:1-12. [PMID: 40116043 PMCID: PMC11934187 DOI: 10.1080/15476286.2025.2483001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2024] [Revised: 03/06/2025] [Accepted: 03/13/2025] [Indexed: 03/23/2025]  Open
20
Osnaya VG, Gómez-Romero L, Moreno-Hagelsieb G, Hernández G. AUGcontext DB: a comprehensive catalog of the mRNA AUG initiator codon context across eukaryotes. RNA Biol 2025;22:1-5. [PMID: 39936323 PMCID: PMC11834415 DOI: 10.1080/15476286.2025.2465196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2024] [Revised: 02/05/2025] [Accepted: 02/06/2025] [Indexed: 02/13/2025]  Open
21
Li P, Li M, Chen WH. Best practices for developing microbiome-based disease diagnostic classifiers through machine learning. Gut Microbes 2025;17:2489074. [PMID: 40186338 PMCID: PMC11980492 DOI: 10.1080/19490976.2025.2489074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/05/2024] [Revised: 03/13/2025] [Accepted: 03/28/2025] [Indexed: 04/07/2025]  Open
22
Zhang Y, Mo C, Ai P, He X, Xiao Q, Yang X. Pharmacomicrobiomics: a new field contributing to optimizing drug therapy in Parkinson's disease. Gut Microbes 2025;17:2454937. [PMID: 39875349 PMCID: PMC11776486 DOI: 10.1080/19490976.2025.2454937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/17/2024] [Revised: 11/19/2024] [Accepted: 01/13/2025] [Indexed: 01/30/2025]  Open
23
Dong H, Wang X, Zheng Y, Li J, Liu Z, Wang A, Shen Y, Wu D, Cui H. Mapping the rapid growth of multi-omics in tumor immunotherapy: Bibliometric evidence of technology convergence and paradigm shifts. Hum Vaccin Immunother 2025;21:2493539. [PMID: 40275437 PMCID: PMC12026087 DOI: 10.1080/21645515.2025.2493539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2024] [Revised: 04/01/2025] [Accepted: 04/11/2025] [Indexed: 04/26/2025]  Open
24
Chen L, Gao X, Liu X, Zhu Y, Wang D. Translational regulation of PKD1 by evolutionarily conserved upstream open reading frames. RNA Biol 2025;22:1-12. [PMID: 39757590 PMCID: PMC11810096 DOI: 10.1080/15476286.2024.2448387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 12/17/2024] [Accepted: 12/24/2024] [Indexed: 01/07/2025]  Open
25
Wu J, Xu S, Li Z, Cong B, Yang Z, Yang Z, Gao W, Liu S, Yu Z, Xu S, Li N, Hou J, Wang G, Cao X, Liu S. SARS-CoV-2 enhances complement-mediated endothelial injury via the suppression of membrane complement regulatory proteins. Emerg Microbes Infect 2025;14:2467781. [PMID: 39945674 PMCID: PMC11873982 DOI: 10.1080/22221751.2025.2467781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2024] [Revised: 01/29/2025] [Accepted: 02/11/2025] [Indexed: 03/01/2025]
26
Zhang D, Wang Q, Li D, Chen S, Chen J, Zhu X, Bai F. Gut microbiome composition and metabolic activity in metabolic-associated fatty liver disease. Virulence 2025;16:2482158. [PMID: 40122128 PMCID: PMC11959907 DOI: 10.1080/21505594.2025.2482158] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2024] [Revised: 01/24/2025] [Accepted: 03/12/2025] [Indexed: 03/25/2025]  Open
27
Maor M, Levy Barazany H, Kolodkin-Gal I. The ladder of regulatory stringency and balance: an application to the US FDA's regulation of bacterial live therapeutics. Gut Microbes 2025;17:2517377. [PMID: 40501442 PMCID: PMC12164374 DOI: 10.1080/19490976.2025.2517377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/17/2025] [Revised: 04/30/2025] [Accepted: 06/03/2025] [Indexed: 06/16/2025]  Open
28
Yi LX, Woon HR, Saw G, Zeng L, Tan EK, Zhou ZD. Induced pluripotent stem cell-related approaches to generate dopaminergic neurons for Parkinson's disease. Neural Regen Res 2025;20:3193-3206. [PMID: 39665833 PMCID: PMC11881713 DOI: 10.4103/nrr.nrr-d-24-00771] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2024] [Revised: 09/25/2024] [Accepted: 10/23/2024] [Indexed: 12/13/2024]  Open
29
Deshpande P, Chimata AV, Singh A. Exploring the role of N-acetyltransferases in diseases: a focus on N-acetyltransferase 9 in neurodegeneration. Neural Regen Res 2025;20:2862-2871. [PMID: 39435604 PMCID: PMC11826463 DOI: 10.4103/nrr.nrr-d-24-00779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Revised: 09/04/2024] [Accepted: 09/23/2024] [Indexed: 10/23/2024]  Open
30
Wang Z, Wang S, Liu X, Shi H, Zhang W, Yang Z, Feng L, Ji A, Liang Z, Liu J, Zhang L, Zhang Y. Discovery of specific protein markers in multiple body fluids and their application in forensic science. Talanta 2025;293:128032. [PMID: 40187281 DOI: 10.1016/j.talanta.2025.128032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2025] [Revised: 03/24/2025] [Accepted: 03/25/2025] [Indexed: 04/07/2025]
31
Hu P, Miao H, Li M, Zhou R, Lou Q, Wang D, Gao J, Guo F. Identification of plasma biomarkers for non-invasive diagnosis of hepatitis B cirrhosis. J Pharm Biomed Anal 2025;263:116909. [PMID: 40300315 DOI: 10.1016/j.jpba.2025.116909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2024] [Revised: 04/15/2025] [Accepted: 04/16/2025] [Indexed: 05/01/2025]
32
Morgan KJ, Carley E, Coyne AN, Rothstein JD, Lusk CP, King MC. Visualizing nuclear pore complex plasticity with pan-expansion microscopy. J Cell Biol 2025;224:e202409120. [PMID: 40504117 PMCID: PMC12162248 DOI: 10.1083/jcb.202409120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2024] [Revised: 04/09/2025] [Accepted: 05/30/2025] [Indexed: 06/16/2025]  Open
33
Zhang W, Zhao S, Wang M, Lou C, Xiang Y, Wu Q. Programming anti-ribozymes to sense trigger RNAs for modulating gene expression in mammalian cells. Synth Syst Biotechnol 2025;10:827-834. [PMID: 40291978 PMCID: PMC12033390 DOI: 10.1016/j.synbio.2025.03.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2025] [Revised: 03/28/2025] [Accepted: 03/31/2025] [Indexed: 04/30/2025]  Open
34
Liu C, Yi F, Niu C, Li Q. Unravelling microbial interactions in a synthetic broad bean paste microbial community. Food Microbiol 2025;130:104767. [PMID: 40210396 DOI: 10.1016/j.fm.2025.104767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Revised: 12/12/2024] [Accepted: 03/04/2025] [Indexed: 04/12/2025]
35
Arvaniti M, Balomenos A, Tsakanikas P, Skandamis P. VBNC induction and persistence of Listeria monocytogenes Scott A as a defence mechanism against free chlorine stress. Food Microbiol 2025;130:104781. [PMID: 40210404 DOI: 10.1016/j.fm.2025.104781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2024] [Revised: 03/23/2025] [Accepted: 03/25/2025] [Indexed: 04/12/2025]
36
Zhang H, Tong H, Yin Q, Qiu Y, Xu H, Li S. Efficient production of ectoine from Jerusalem artichoke using engineered Escherichia coli. BIORESOURCE TECHNOLOGY 2025;431:132589. [PMID: 40288656 DOI: 10.1016/j.biortech.2025.132589] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 01/24/2025] [Accepted: 04/24/2025] [Indexed: 04/29/2025]
37
Anderson A, Kinahan MW, Gonzalez AH, Udekwu K, Hernandez-Vargas EA. Invariant set theory for predicting potential failure of antibiotic cycling. Infect Dis Model 2025;10:897-908. [PMID: 40297503 PMCID: PMC12036053 DOI: 10.1016/j.idm.2025.04.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2024] [Revised: 01/22/2025] [Accepted: 04/01/2025] [Indexed: 04/30/2025]  Open
38
Qiao J, Guo X, Jin J, Wang D, Li K, Gao W, Cui F, Zhang Z, Shi H, Wei L. Taco-DDI: accurate prediction of drug-drug interaction events using graph transformer-based architecture and dynamic co-attention matrices. Neural Netw 2025;189:107655. [PMID: 40446573 DOI: 10.1016/j.neunet.2025.107655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2024] [Revised: 05/11/2025] [Accepted: 05/19/2025] [Indexed: 06/11/2025]
39
Yu H, Wang Y, Yang Z, Ying J, Guan F, Liu B, Miao M, Mohamed A, Wei X, Yang Y, Liu X, Sun L, Jiang Z, Yang S, Xin F. Enhancing the synthesis efficiency of galacto-oligosaccharides of a β-galactosidase from Paenibacillus barengoltzii by engineering the active and distal sites. Food Chem 2025;483:144208. [PMID: 40220440 DOI: 10.1016/j.foodchem.2025.144208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Revised: 03/20/2025] [Accepted: 04/03/2025] [Indexed: 04/14/2025]
40
Sena-Torralba A, Banguera-Ordoñez YD, Carrascosa J, Maquieira Á, Morais S. Portable electrophoretic lateral flow biosensing for ultra-sensitive human lactate dehydrogenase detection in serum samples. Biosens Bioelectron 2025;282:117504. [PMID: 40273775 DOI: 10.1016/j.bios.2025.117504] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2025] [Revised: 03/29/2025] [Accepted: 04/21/2025] [Indexed: 04/26/2025]
41
Liu Q, Ye YY, Yang S, Cui CY, Du H, Ye JC, Cheng JL, Hu RW, Xiang L, Liu BL, Li YW, Cai QY, Zhang M, Mo CH, Zhao HM. Sustainable remediation of butyl xanthate-contaminated mine wastewater by combining emergent macrophyte Cyperus alternifolius with a versatile bacterial isolate. JOURNAL OF HAZARDOUS MATERIALS 2025;493:138345. [PMID: 40280067 DOI: 10.1016/j.jhazmat.2025.138345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 03/25/2025] [Accepted: 04/18/2025] [Indexed: 04/29/2025]
42
Ameen ZS, Mubarak AS, Hamad M, Hamoudi R, Jemimah S, Ozsahin DU, Hamad M. Incorporating time as a third dimension in transcriptomic analysis using machine learning and explainable AI. Comput Biol Chem 2025;117:108432. [PMID: 40132403 DOI: 10.1016/j.compbiolchem.2025.108432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 03/03/2025] [Accepted: 03/14/2025] [Indexed: 03/27/2025]
43
Wong DPH, Wong KH, Park S, Boël G, Hunt JF, Aalberts DP. OPT: Codon optimize gene sequences for E. coli protein overexpression. J Mol Biol 2025;437:168965. [PMID: 40133777 PMCID: PMC12145263 DOI: 10.1016/j.jmb.2025.168965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2024] [Revised: 01/23/2025] [Accepted: 01/23/2025] [Indexed: 03/27/2025]
44
Liu J, Zhang WG, Rao ZM. Transcriptional regulator-based biosensors for biomanufacturing in Corynebacterium glutamicum. Microbiol Res 2025;297:128169. [PMID: 40209574 DOI: 10.1016/j.micres.2025.128169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2025] [Revised: 03/10/2025] [Accepted: 04/02/2025] [Indexed: 04/12/2025]
45
Tan L, Yang J, He Z, Wan Y, Li Z, Song J, Zhang W, Yang X. Inhibitory effects of extracts from Prunella vulgaris on biofilm formation of Staphylococcus aureus. Microb Pathog 2025;205:107694. [PMID: 40355056 DOI: 10.1016/j.micpath.2025.107694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 05/07/2025] [Accepted: 05/09/2025] [Indexed: 05/14/2025]
46
Ak B, Akısü M, Durmaz A, Yalaz M, Terek D, Sönmezler E, Oktay Y, Akın H, Aykut A. Expanding the genetic spectrum of short rib polydactyly syndrome: Novel DYNC2H1 variants and functional insights. Bone 2025;197:117511. [PMID: 40339774 DOI: 10.1016/j.bone.2025.117511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Revised: 04/28/2025] [Accepted: 05/02/2025] [Indexed: 05/10/2025]
47
Jiang Y, Tian Y, Han J, Wang X, Zhang R, Xu X, Ma X, Zhang W, Man C. CircITSN2-miR-17-5p/20a-5p/20b-5p-PD-L1 regulatory network is a potential molecular mechanism of PD-L1 gene involving in immune response to IBDV. Avian Pathol 2025;54:512-520. [PMID: 39980444 DOI: 10.1080/03079457.2025.2470754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 09/11/2024] [Accepted: 11/26/2024] [Indexed: 02/22/2025]
48
Zhang Y, Deng J, Dong M, Wu J, Zhao Q, Gao X, Xiong D. PILOT: Deep Siamese network with hybrid attention improves prediction of mutation impact on protein stability. Neural Netw 2025;188:107476. [PMID: 40252373 DOI: 10.1016/j.neunet.2025.107476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2024] [Revised: 02/13/2025] [Accepted: 04/07/2025] [Indexed: 04/21/2025]
49
Dar AI, Randhawa S, Verma M, Saini TC, Acharya A. Debugging the dynamics of protein corona: Formation, composition, challenges, and applications at the nano-bio interface. Adv Colloid Interface Sci 2025;342:103535. [PMID: 40319752 DOI: 10.1016/j.cis.2025.103535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 04/25/2025] [Accepted: 04/25/2025] [Indexed: 05/07/2025]
50
Hashem HR, Amin BH, Yosri M. Elucidation of the possible synergistic effect of Torulaspora delbrueckii and ciprofloxacin in a rat model of induced pulmonary fibrosis and infected with Klebsiella pneumonia: An in vivo study. Tissue Cell 2025;95:102865. [PMID: 40120428 DOI: 10.1016/j.tice.2025.102865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Revised: 02/13/2025] [Accepted: 03/14/2025] [Indexed: 03/25/2025]
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