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Berauer BJ, Akale A, Schweiger AH, Knott M, Diehl D, Wolf M, Sawers RJH, Ahmed MA. Differences in mucilage properties and stomatal sensitivity of locally adapted Zea mays in relation with precipitation seasonality and vapour pressure deficit regime of their native environment. PLANT DIRECT 2023; 7:e519. [PMID: 37600238 PMCID: PMC10435965 DOI: 10.1002/pld3.519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 07/05/2023] [Accepted: 07/27/2023] [Indexed: 08/22/2023]
Abstract
With ongoing climate change and the increase in extreme weather events, especially droughts, the challenge of maintaining food security is becoming ever greater. Locally adapted landraces of crops represent a valuable source of adaptation to stressful environments. In the light of future droughts-both by altered soil water supply and increasing atmospheric water demand (vapor pressure deficit [VPD])-plants need to improve their water efficiency. To do so, plants can enhance their access to soil water by improving rhizosphere hydraulic conductivity via the exudation of mucilage. Furthermore, plants can reduce transpirational water loss via stomatal regulation. Although the role of mucilage and stomata regulation on plant water management have been extensively studied, little is known about a possible coordination between root mucilage properties and stomatal sensitivity as well as abiotic drivers shaping the development of drought resistant trait suits within landraces. Mucilage properties and stomatal sensitivity of eight Mexican landraces of Zea mays in contrast with one inbred line were first quantified under controlled conditions and second related to water demand and supply at their respective site of origin. Mucilage physical properties-namely, viscosity, contact angle, and surface tension-differed between the investigated maize varieties. We found strong influences of precipitation seasonality, thus plant water availability, on mucilage production (R 2 = .88, p < .01) and mucilage viscosity (R 2 = .93, p < .01). Further, stomatal sensitivity to increased atmospheric water demand was related to mucilage viscosity and contact angle, both of which are crucial in determining mucilage's water repellent, thus maladaptive, behavior upon soil drying. The identification of landraces with pre-adapted suitable trait sets with regard to drought resistance is of utmost importance, for example, trait combinations such as exhibited in one of the here investigated landraces. Our results suggest a strong environmental selective force of seasonality in plant water availability on mucilage properties as well as regulatory stomatal effects to avoid mucilage's maladaptive potential upon drying and likely delay critical levels of hydraulic dysfunction. By this, landraces from highly seasonal climates may exhibit beneficial mucilage and stomatal traits to prolong plant functioning under edaphic drought. These findings may help breeders to efficiently screen for local landraces with pre-adaptations to drought to ultimately increase crop yield resistance under future climatic variability.
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Affiliation(s)
- Bernd J. Berauer
- Institute of Landscape and Plant Ecology, Department of Plant EcologyUniversity of HohenheimStuttgartGermany
| | - Asegidew Akale
- Root‐Soil Interaction, TUM School of Life SciencesTechnical University of MunichFreisingGermany
| | - Andreas H. Schweiger
- Institute of Landscape and Plant Ecology, Department of Plant EcologyUniversity of HohenheimStuttgartGermany
| | - Mathilde Knott
- Institute for Environmental Sciences, Group of Environmental and Soil ChemistryRPTU in LandauLandauGermany
| | - Dörte Diehl
- Institute for Environmental Sciences, Group of Environmental and Soil ChemistryRPTU in LandauLandauGermany
| | - Marc‐Philip Wolf
- Institute for Environmental Sciences, Group of Environmental and Soil ChemistryRPTU in LandauLandauGermany
| | - Ruairidh J. H. Sawers
- Department of Plant ScienceThe Pennsylvania State UniversityState CollegePennsylvaniaUSA
| | - Mutez A. Ahmed
- Root‐Soil Interaction, TUM School of Life SciencesTechnical University of MunichFreisingGermany
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Wen T, Xie P, Liu H, Liu T, Zhao M, Yang S, Niu G, Hale L, Singh BK, Kowalchuk GA, Shen Q, Yuan J. Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. Nat Commun 2023; 14:4497. [PMID: 37495619 PMCID: PMC10372070 DOI: 10.1038/s41467-023-40184-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Accepted: 07/05/2023] [Indexed: 07/28/2023] Open
Abstract
Prebiotics are compounds that selectively stimulate the growth and activity of beneficial microorganisms. The use of prebiotics is a well-established strategy for managing human gut health. This concept can also be extended to plants where plant rhizosphere microbiomes can improve the nutrient acquisition and disease resistance. However, we lack effective strategies for choosing metabolites to elicit the desired impacts on plant health. In this study, we target the rhizosphere of tomato (Solanum lycopersicum) suffering from wilt disease (caused by Ralstonia solanacearum) as source for potential prebiotic metabolites. We identify metabolites (ribose, lactic acid, xylose, mannose, maltose, gluconolactone, and ribitol) exclusively used by soil commensal bacteria (not positively correlated with R. solanacearum) but not efficiently used by the pathogen in vitro. Metabolites application in the soil with 1 µmol g-1 soil effectively protects tomato and other Solanaceae crops, pepper (Capsicum annuum) and eggplant (Solanum melongena), from pathogen invasion. After adding prebiotics, the rhizosphere soil microbiome exhibits enrichment of pathways related to carbon metabolism and autotoxin degradation, which were driven by commensal microbes. Collectively, we propose a novel pathway for mining metabolites from the rhizosphere soil and their use as prebiotics to help control soil-borne bacterial wilt diseases.
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Affiliation(s)
- Tao Wen
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China
- Key Laboratory of Green Intelligent Fertilizer Innovation, MARD, Sinong Bio-organic Fertilizer Institute, Nanjing, 210000, China
| | - Penghao Xie
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China
| | - Hongwei Liu
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2753, Australia
| | - Ting Liu
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China
| | - Mengli Zhao
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China
| | - Shengdie Yang
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China
| | - Guoqing Niu
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China
| | - Lauren Hale
- USDA, Agricultural Research Service, San Joaquin Valley Agricultural Sciences Center, Parlier, CA, USA
| | - Brajesh K Singh
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, 2753, Australia
| | - George A Kowalchuk
- Ecology and Biodiversity Group, Department of Biology, Institute of Environmental Biology, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands
| | - Qirong Shen
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China
| | - Jun Yuan
- Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, 210095, China.
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Mazoyon C, Firmin S, Bensaddek L, Pecourt A, Chabot A, Faucon MP, Sarazin V, Dubois F, Duclercq J. Optimizing Crop Production with Bacterial Inputs: Insights into Chemical Dialogue between Sphingomonas sediminicola and Pisum sativum. Microorganisms 2023; 11:1847. [PMID: 37513019 PMCID: PMC10385058 DOI: 10.3390/microorganisms11071847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/13/2023] [Accepted: 07/18/2023] [Indexed: 07/30/2023] Open
Abstract
The use of biological inputs is an interesting approach to optimize crop production and reduce the use of chemical inputs. Understanding the chemical communication between bacteria and plants is critical to optimizing this approach. Recently, we have shown that Sphingomonas (S.) sediminicola can improve both nitrogen supply and yield in pea. Here, we used biochemical methods and untargeted metabolomics to investigate the chemical dialog between S. sediminicola and pea. We also evaluated the metabolic capacities of S. sediminicola by metabolic profiling. Our results showed that peas release a wide range of hexoses, organic acids, and amino acids during their development, which can generally recruit and select fast-growing organisms. In the presence of S. sediminicola, a more specific pattern of these molecules took place, gradually adapting to the metabolic capabilities of the bacterium, especially for pentoses and flavonoids. In turn, S. sediminicola is able to produce several compounds involved in cell differentiation, biofilm formation, and quorum sensing to shape its environment, as well as several molecules that stimulate pea growth and plant defense mechanisms.
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Affiliation(s)
- Candice Mazoyon
- Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80039 Amiens, France
| | - Stéphane Firmin
- Agroécologie, Hydrogéochimie, Milieux et Ressources (AGHYLE, UP2018.C101) UniLaSalle, 60026 Beauvais, France
| | - Lamine Bensaddek
- Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80039 Amiens, France
| | - Audrey Pecourt
- Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80039 Amiens, France
- AgroStation, 68700 Aspach-le-Bas, France
| | - Amélie Chabot
- UFR des Sciences, Université de Picardie Jules Verne (UPJV), 80039 Amiens, France
| | - Michel-Pierre Faucon
- Agroécologie, Hydrogéochimie, Milieux et Ressources (AGHYLE, UP2018.C101) UniLaSalle, 60026 Beauvais, France
| | | | - Fréderic Dubois
- Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80039 Amiens, France
| | - Jérôme Duclercq
- Ecologie et Dynamique des Systèmes Anthropisés (EDYSAN, UMR7058 CNRS), Université de Picardie Jules Verne (UPJV), 80039 Amiens, France
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Feng X, Li S, Meng D, Di Q, Zhou M, Yu X, He C, Yan Y, Wang J, Sun M, Li Y. CsBPC2 is a key regulator of root growth and development. PHYSIOLOGIA PLANTARUM 2023; 175:e13977. [PMID: 37616013 DOI: 10.1111/ppl.13977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 07/02/2023] [Accepted: 07/03/2023] [Indexed: 08/25/2023]
Abstract
BASIC PENTACYSTEINE (BPCs) transcription factors are important regulators of plant growth and development. However, the regulatory mechanism of BPC2 in roots remains unclear. In our previous study, we created Csbpc2 cucumber mutants by the CRISPR/Cas9 system, and our studies on the phenotype of Csbpc2 mutants showed that the root growth was inhibited compared with wide-type (WT). Moreover, the surface area, volume and number of roots decreased significantly, with root system architecture changing from dichotomous branching to herringbone branching. Compared with WT, the leaf growth of the Csbpc2 mutants was not affected. However, the palisade and spongy tissue were significantly thinner, which was not beneficial for photosynthesis. The metabolome of root exudates showed that compared with WT, amino acids and their derivatives were significantly decreased, and the enriched pathways were mainly regulated by amino acids and their derivatives, indicating that knockout of CsBPC2 mainly affected the amino acid content in root exudates. Importantly, transcriptome analysis showed that knockout of CsBPC2 mainly affected root gene expression. Knockout of CsBPC2 significantly reduced the gene expression of gibberellins synthesis. However, the expression of genes related to amino acid synthesis, nitrogen fixation and PSII-related photosynthesis increased significantly, which may be due to the effect of knocking out CsBPC2 on gibberellins synthesis, resulting in the inhibition of seedling growth, thus forming negative feedback regulation. Generally, we showed for the first time that BPC2 is a key regulator gene of root growth and development, laying the foundation for future mechanisms of BPC2 regulation in roots.
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Affiliation(s)
- Xiaojie Feng
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Shuzhen Li
- Ganzhou Key Laboratory of Greenhouse Vegetable, College of Life Science, Gannan Normal University, Ganzhou, China
| | - Di Meng
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Qinghua Di
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Mengdi Zhou
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Xianchang Yu
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Chaoxing He
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yan Yan
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jun Wang
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Mintao Sun
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Yansu Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China
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55
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Graf M, Greenfield LM, Reay MK, Bargiela R, Williams GB, Onyije C, Lloyd CEM, Bull ID, Evershed RP, Golyshin PN, Chadwick DR, Jones DL. Increasing concentration of pure micro- and macro-LDPE and PP plastic negatively affect crop biomass, nutrient cycling, and microbial biomass. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131932. [PMID: 37390687 DOI: 10.1016/j.jhazmat.2023.131932] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Revised: 05/29/2023] [Accepted: 06/23/2023] [Indexed: 07/02/2023]
Abstract
Over the last 50 years, the intense use of agricultural plastic in the form of mulch films has led to an accumulation of plastic in soil, creating a legacy of plastic in agricultural fields. Plastic often contains additives, however it is still largely unknown how these compounds affect soil properties, potentially influencing or masking effects of the plastic itself. Therefore, the aim of this study was to investigate the effects of pure plastics of varying sizes and concentrations, to improve our understanding of plastic-only interactions within soil-plant mesocosms. Maize (Zea mays L.) was grown over eight weeks following the addition of micro and macro low-density polyethylene and polypropylene at increasing concentrations (equivalent to 1, 10, 25, and 50 years mulch film use) and the effects of plastic on key soil and plant properties were measured. We found the effect of both macro and microplastic on soil and plant health is negligible in the short-term (1 to <10 years). However, ≥ 10 years of plastic application for both plastic types and sizes resulted in a clear negative effect on plant growth and microbial biomass. This study provides vital insight into the effect of both macro and microplastics on soil and plant properties.
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Affiliation(s)
- Martine Graf
- School of Natural Sciences, Bangor University, Bangor, Gwynedd LL57 2UW, UK.
| | - Lucy M Greenfield
- School of Natural Sciences, Bangor University, Bangor, Gwynedd LL57 2UW, UK
| | - Michaela K Reay
- Organic Geochemistry Unit, School of Chemistry, University of Bristol, Bristol BS8 1TS, UK
| | - Rafael Bargiela
- Centre of Environmental Biotechnology, Bangor University, Bangor, Gwynedd LL57 2UW, UK
| | - Gwion B Williams
- Centre of Environmental Biotechnology, Bangor University, Bangor, Gwynedd LL57 2UW, UK
| | - Charles Onyije
- Organic Geochemistry Unit, School of Chemistry, University of Bristol, Bristol BS8 1TS, UK
| | - Charlotte E M Lloyd
- Organic Geochemistry Unit, School of Chemistry, University of Bristol, Bristol BS8 1TS, UK
| | - Ian D Bull
- Organic Geochemistry Unit, School of Chemistry, University of Bristol, Bristol BS8 1TS, UK
| | - Richard P Evershed
- Organic Geochemistry Unit, School of Chemistry, University of Bristol, Bristol BS8 1TS, UK
| | - Peter N Golyshin
- Centre of Environmental Biotechnology, Bangor University, Bangor, Gwynedd LL57 2UW, UK
| | - David R Chadwick
- School of Natural Sciences, Bangor University, Bangor, Gwynedd LL57 2UW, UK
| | - Davey L Jones
- School of Natural Sciences, Bangor University, Bangor, Gwynedd LL57 2UW, UK; Centre of Environmental Biotechnology, Bangor University, Bangor, Gwynedd LL57 2UW, UK; SoilsWest, Centre for Sustainable Farming Systems, Food Futures Institute, Murdoch University, Murdoch, WA 6150, Australia
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56
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Cascone P, Vuts J, Birkett MA, Rasmann S, Pickett JA, Guerrieri E. Small volatile lipophilic molecules induced belowground by aphid attack elicit a defensive response in neighbouring un-infested plants. FRONTIERS IN PLANT SCIENCE 2023; 14:1154587. [PMID: 37426972 PMCID: PMC10326905 DOI: 10.3389/fpls.2023.1154587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Accepted: 06/07/2023] [Indexed: 07/11/2023]
Abstract
In pioneering studies on plant-aphid interactions, we have observed that Vicia faba plants infested by aphids can transmit signals via the rhizosphere that induce aboveground defence in intact, neighbouring plants. The aphid parasitoid Aphidius ervi is significantly attracted towards intact broad bean plants grown in a hydroponic solution previously harbouring Acyrtosiphon pisum-infested plants. To identify the rhizosphere signal(s) possibly mediating this belowground plant-plant communication, root exudates were collected using Solid-Phase Extraction (SPE) from 10-day old A. pisum-infested and un-infested Vicia faba plants hydroponically grown. To verify the ability of these root exudates to trigger defence mechanisms against the aphids we added them to V. fabae plants grown in hydroponic solution, and tested these plants in the wind-tunnel bioassay to assess their attractiveness towards the aphids' parasitoids A. ervi. We identified three small volatile lipophilic molecules as plant defence elicitors: 1-octen-3-ol, sulcatone and sulcatol, in SPE extracts of A. pisum-infested broad bean plants. In wind tunnel assays, we recorded a significant increase in the attractiveness towards A. ervi of V. faba plants grown in hydroponic solution treated with these compounds, compared to plants grown in hydroponic treated with ethanol (control). Both 1-octen-3-ol and sulcatol have asymmetrically substituted carbon atoms at positions 3 and 2, respectively. Hence, we tested both their enantiomers alone or in mixture. We highlighted a synergistic effect on the level of attractiveness towards the parasitoid when testing the three compounds together in respect to the response recorded against them singly tested. These behavioural responses were supported by the characterization of headspace volatiles released by tested plants. These results shed new light on the mechanisms underlying plant-plant communication belowground and prompt the use of bio-derived semiochemicals for a sustainable protection of agricultural crops.
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Affiliation(s)
- Pasquale Cascone
- Institute for Sustainable Plant Protection, Consiglio Nazionale delle Ricerche, Portici, Napoli, Italy
| | - Jozsef Vuts
- Biointeractions and Crop Protection Department, Rothamsted Research, Harpenden, Hertfordshire, United Kingdom
| | - Michael A. Birkett
- Biointeractions and Crop Protection Department, Rothamsted Research, Harpenden, Hertfordshire, United Kingdom
| | - Sergio Rasmann
- Institute of Biology, University of Neuchatel, Neuchatel, Switzerland
| | - John A. Pickett
- School of Chemistry, Cardiff University, Cardiff, United Kingdom
| | - Emilio Guerrieri
- Institute for Sustainable Plant Protection, Consiglio Nazionale delle Ricerche, Portici, Napoli, Italy
- Institute for Sustainable Plant Protection, Consiglio Nazionale delle Ricerche, Torino, Italy
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Zhang NC, A D, Chao YQ, Li HY, Li C, Lin QQ, Li YY, Qiu RL. Mechanism of polycyclic aromatic hydrocarbons degradation in the rhizosphere of Phragmites australis: Organic acid co-metabolism, iron-driven, and microbial response. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 327:121608. [PMID: 37044257 DOI: 10.1016/j.envpol.2023.121608] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Revised: 04/06/2023] [Accepted: 04/07/2023] [Indexed: 06/19/2023]
Abstract
Microbial co-metabolism is crucial for the efficient biodegradation of polycyclic aromatic hydrocarbons (PAHs); however, their intrinsic mechanisms remain unclear. To explore the co-metabolic degradation of PAHs, root organic acids (ROAs) (phenolic ROAs: caffeic acid [CA] and ferulic acid [FA]; non-phenolic ROAs: oxalic acid [OA]) were exogenously added as co-metabolic substrates under high (HFe) and low (LFe) iron levels in this study. The results demonstrated that more than 90% of PAHs were eliminated from the rhizosphere of Phragmites australis. OA can promote the enrichment of unrelated degrading bacteria and non-specific dioxygenases. FA with a monohydroxy structure can activate hydroxylase; however, it relies on phytosiderophores released by plants (such as OA) to adapt to stress. Therefore, non-specific co-metabolism occurred in these units. The best performance for PAH removal was observed in the HFe-CA unit because: (a) HFe concentrations enriched the Fe-reducing and denitrifying bacteria and promoted the rate-limiting degradation for PAHs as the enzyme cofactor; (b) CA with a dihydroxyl structure enriched the related degrading bacteria, stimulated specific dioxygenase, and activated Fe to concentrate around the rhizosphere simultaneously to perform the specific co-metabolism. Understanding the co-metabolic degradation of PAHs will help improve the efficacy of rhizosphere-mediated remediation.
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Affiliation(s)
- Ni-Chen Zhang
- School of Environmental Science and Engineering, Guangdong Provincial Key Lab for Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510006, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China
| | - Dan A
- Engineering and Technology Research Center for Agricultural Land Pollution Integrated Prevention and Control of Guangdong Higher Education Institute, College of Resources and Environment, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China
| | - Yuan-Qing Chao
- School of Environmental Science and Engineering, Guangdong Provincial Key Lab for Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510006, China
| | - Hai-Yan Li
- Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs & Guangdong Provincial Key Laboratory of Aquatic Animal Immunology and Sustainable Aquaculture, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, 510380, China
| | - Charles Li
- Department of Public Health, California State University, East Bay, CA, 94542, USA
| | - Qing-Qi Lin
- Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China; Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China
| | - Ya-Ying Li
- Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China
| | - Rong-Liang Qiu
- School of Environmental Science and Engineering, Guangdong Provincial Key Lab for Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou, 510006, China; Guangdong Laboratory for Lingnan Modern Agriculture, Guangzhou, 510642, China; Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China.
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Fortier M, Lemyre J, Ancelin E, Oulyadi H, Driouich A, Vicré M, Follet-Gueye ML, Guilhaudis L. Development of a root exudate collection protocol for metabolomics analysis using Nuclear Magnetic Resonance. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2023; 331:111694. [PMID: 37004941 DOI: 10.1016/j.plantsci.2023.111694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 03/27/2023] [Accepted: 03/28/2023] [Indexed: 06/19/2023]
Abstract
Large amounts of root exudates are released by plant roots into the soil. Due to their importance in regulating the rhizosphere properties, it is necessary to unravel the precise composition and function of exudates at the root-soil interface. However, obtaining root exudates without inducing artefacts is a difficult task. To analyse the low molecular weight molecules secreted by pea roots, a protocol of root exudate collection was developed to perform a metabolomics analysis using Nuclear Magnetic Resonance (NMR). To date a few NMR studies are dedicated to root exudates. Plant culture, exudates collection and sample preparation methods had thus to be adapted to the NMR approach. Here, pea seedlings were hydroponically grown. The obtained NMR fingerprints show that osmotic stress increases the quantity of the exudates but not their diversity. We therefore selected a protocol reducing the harvest time and using an ionic solvent and applied it to the analysis of faba bean exudates. NMR analysis of the metabolic profiles allowed to discriminate between pea and faba bean according to their exudate composition. This protocol is therefore very promising for studying the composition of root exudates from different plant species as well as their evolution in response to different environmental conditions or pathophysiological events.
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Affiliation(s)
- Mélanie Fortier
- Univ Rouen Normandie, Laboratoire COBRA (UMR 6014 & FR 3038), INSA de Rouen, CNRS, F-76000 Rouen, France; Univ Rouen Normandie, Laboratoire Glyco-MEV UR 4358, SFR Normandie Végétal FED 4277, F-76000 Rouen, France
| | - Julie Lemyre
- Univ Rouen Normandie, Laboratoire COBRA (UMR 6014 & FR 3038), INSA de Rouen, CNRS, F-76000 Rouen, France
| | - Edouard Ancelin
- Univ Rouen Normandie, Laboratoire Glyco-MEV UR 4358, SFR Normandie Végétal FED 4277, F-76000 Rouen, France
| | - Hassan Oulyadi
- Univ Rouen Normandie, Laboratoire COBRA (UMR 6014 & FR 3038), INSA de Rouen, CNRS, F-76000 Rouen, France
| | - Azeddine Driouich
- Univ Rouen Normandie, Laboratoire Glyco-MEV UR 4358, SFR Normandie Végétal FED 4277, F-76000 Rouen, France
| | - Maïté Vicré
- Univ Rouen Normandie, Laboratoire Glyco-MEV UR 4358, SFR Normandie Végétal FED 4277, F-76000 Rouen, France
| | - Marie-Laure Follet-Gueye
- Univ Rouen Normandie, Laboratoire Glyco-MEV UR 4358, SFR Normandie Végétal FED 4277, F-76000 Rouen, France.
| | - Laure Guilhaudis
- Univ Rouen Normandie, Laboratoire COBRA (UMR 6014 & FR 3038), INSA de Rouen, CNRS, F-76000 Rouen, France.
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Steinauer K, Thakur MP, Emilia Hannula S, Weinhold A, Uthe H, van Dam NM, Martijn Bezemer T. Root exudates and rhizosphere microbiomes jointly determine temporal shifts in plant-soil feedbacks. PLANT, CELL & ENVIRONMENT 2023; 46:1885-1899. [PMID: 36794528 DOI: 10.1111/pce.14570] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 01/10/2023] [Accepted: 02/13/2023] [Indexed: 05/04/2023]
Abstract
Plants influence numerous soil biotic factors that can alter the performance of later growing plants-defined as plant-soil feedback (PSF). Here, we investigate whether PSF effects are linked with the temporal changes in root exudate diversity and the rhizosphere microbiome of two common grassland species (Holcus lanatus and Jacobaea vulgaris). Both plant species were grown separately establishing conspecific and heterospecific soils. In the feedback phase, we determined plant biomass, measured root exudate composition, and characterised rhizosphere microbial communities weekly (eight time points). Over time, we found a strong negative conspecific PSF on J. vulgaris in its early growth phase which changed into a neutral PSF, whereas H. lanatus exhibited a more persistent negative PSF. Root exudate diversity increased considerably over time for both plant species. Rhizosphere microbial communities were distinct in conspecific and heterospecific soils and showed strong temporal patterns. Bacterial communities converged over time. Using path models, PSF effects could be linked to the temporal dynamics of root exudate diversity, whereby shifts in rhizosphere microbial diversity contributed to temporal variation in PSF to a lesser extent. Our results highlight the importance of root exudates and rhizosphere microbial communities in driving temporal changes in the strength of PSF effects.
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Affiliation(s)
- Katja Steinauer
- Department of Terrestrial Ecology, The Netherlands Institute of Ecology, Wageningen, The Netherlands
- Institute of Plant Science, University of Bern, Bern, Switzerland
| | - Madhav P Thakur
- Department of Terrestrial Ecology, The Netherlands Institute of Ecology, Wageningen, The Netherlands
- Institute of Ecology and Evolution, University of Bern, Bern, Switzerland
| | - S Emilia Hannula
- Department of Terrestrial Ecology, The Netherlands Institute of Ecology, Wageningen, The Netherlands
- Department of Environmental Biology, Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands
| | - Alexander Weinhold
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University, Jena, Germany
| | - Henriette Uthe
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University, Jena, Germany
| | - Nicole M van Dam
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Institute of Biodiversity, Friedrich Schiller University, Jena, Germany
- Molecular Interaction Ecology, Institute of Water and Wetland Research (IWWR), Radboud University, Nijmegen, The Netherlands
| | - T Martijn Bezemer
- Department of Terrestrial Ecology, The Netherlands Institute of Ecology, Wageningen, The Netherlands
- Section Plant Ecology and Phytochemistry, Institute of Biology, Leiden University, Leiden, The Netherlands
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Jiang Z, Fu Y, Zhou L, He Y, Zhou G, Dietrich P, Long J, Wang X, Jia S, Ji Y, Jia Z, Song B, Liu R, Zhou X. Plant growth strategy determines the magnitude and direction of drought-induced changes in root exudates in subtropical forests. GLOBAL CHANGE BIOLOGY 2023; 29:3476-3488. [PMID: 36931867 DOI: 10.1111/gcb.16685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 02/27/2023] [Accepted: 03/08/2023] [Indexed: 05/16/2023]
Abstract
Root exudates are an important pathway for plant-microbial interactions and are highly sensitive to climate change. However, how extreme drought affects root exudates and the main components, as well as species-specific differences in response magnitude and direction, are poorly understood. In this study, root exudation rates of total carbon (C) and its components (e.g., sugar, organic acid, and amino acid) were measured under the control and extreme drought treatments (i.e., 70% throughfall reduction) by in situ collection of four tree species with different growth rates in a subtropical forest. We also quantified soil properties, root morphological traits, and mycorrhizal infection rates to examine the driving factors underlying variations in root exudation. Our results showed that extreme drought significantly decreased root exudation rates of total C, sugar, and amino acid by 17.8%, 30.8%, and 35.0%, respectively, but increased root exudation rate of organic acid by 38.6%, which were largely associated with drought-induced changes in tree growth rates, root morphological traits, and mycorrhizal infection rates. Specifically, trees with relatively high growth rates were more responsive to drought for root exudation rates compared with those with relatively low growth rates, which were closely related to root morphological traits and mycorrhizal infection rates. These findings highlight the importance of plant growth strategy in mediating drought-induced changes in root exudation rates. The coordinations among root exudation rates, root morphological traits, and mycorrhizal symbioses in response to drought could be incorporated into land surface models to improve the prediction of climate change impacts on rhizosphere C dynamics in forest ecosystems.
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Affiliation(s)
- Zheng Jiang
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Yuling Fu
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Lingyan Zhou
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Yanghui He
- Northeast Asia Ecosystem Carbon Sink Research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, China
| | - Guiyao Zhou
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Peter Dietrich
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - Jilan Long
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Xinxin Wang
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Shuxian Jia
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Yuhuang Ji
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Zhen Jia
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Bingqian Song
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Ruiqiang Liu
- Northeast Asia Ecosystem Carbon Sink Research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, China
| | - Xuhui Zhou
- Center for Global Change and Ecological Forecasting, Tiantong National Field Station for Forest Ecosystem, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
- Northeast Asia Ecosystem Carbon Sink Research Center (NACC), Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, China
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61
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Jiang O, Li L, Duan G, Gustave W, Zhai W, Zou L, An X, Tang X, Xu J. Root exudates increased arsenic mobility and altered microbial community in paddy soils. J Environ Sci (China) 2023; 127:410-420. [PMID: 36522072 DOI: 10.1016/j.jes.2022.05.036] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 05/23/2022] [Accepted: 05/24/2022] [Indexed: 06/17/2023]
Abstract
Root exudates are crucial for plants returning organic matter to soils, which is assumed to be a major source of carbon for the soil microbial community. This study investigated the influence of root exudates on the fate of arsenic (As) with a lab simulation experiment. Our findings suggested that root exudates had a dose effect on the soil physicochemical properties, As speciation transformation and the microbial community structure at different concentrations. The addition of root exudates increased the soil pH while decreased the soil redox potential (Eh). These changes in the soil pH and Eh increased As and ferrous (Fe(II)) concentrations in soil porewater. Results showed that 40 mg/L exudates addition significantly increased arsenite (As(III)) and arsenate (As(V)) by 541 and 10 times respectively within 30 days in soil porewater. The relative abundance of Fe(III)-reducing bacteria Geobacter and Anaeromyxobacter increased with the addition of root exudates, which enhanced microbial Fe reduction. Together these results suggest that investigating how root exudates affect the mobility and transformation of As in paddy soils is helpful to systematically understand the biogeochemical cycle of As in soil-rice system, which is of great significance for reducing the health risk of soil As contamination.
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Affiliation(s)
- Ouyuan Jiang
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Lvyao Li
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Guilan Duan
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Williamson Gustave
- School of Chemistry, Environmental & Life Sciences, University of The Bahamas, New Providence, Nassau, Bahamas
| | - Weiwei Zhai
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Lina Zou
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China; Zhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops Research, Flower Research and Development Centre, Zhejiang Academy of Agricultural Sciences, Hangzhou 311202, China.
| | - Xia An
- Zhejiang Xiaoshan Institute of Cotton & Bast Fiber Crops Research, Flower Research and Development Centre, Zhejiang Academy of Agricultural Sciences, Hangzhou 311202, China
| | - Xianjin Tang
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
| | - Jianming Xu
- Institute of Soil and Water Resources and Environmental Science, Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, Zhejiang University, Hangzhou 310058, China
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Wang Q, Wang D, Agathokleous E, Cheng C, Shang B, Feng Z. Soil Microbial Community Involved in Nitrogen Cycling in Rice Fields Treated with Antiozonant under Ambient Ozone. Appl Environ Microbiol 2023; 89:e0018023. [PMID: 37022183 PMCID: PMC10132097 DOI: 10.1128/aem.00180-23] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Accepted: 03/04/2023] [Indexed: 04/07/2023] Open
Abstract
Ethylenediurea (EDU) can effectively mitigate the crop yield loss caused by ozone (O3), a major, phytotoxic air pollutant. However, the relevant mechanisms are poorly understood, and the effect of EDU on soil ecosystems has not been comprehensively examined. In this study, a hybrid rice variety (Shenyou 63) was cultivated under ambient O3 and sprayed with 450 ppm EDU or water every 10 days. Real time quantitative polymerase chain reaction (RT-qPCR) showed that EDU had no significant effect on the microbial abundance in either rhizospheric or bulk soils. By applying both metagenomic sequencing and the direct assembly of nitrogen (N)-cycling genes, EDU was found to decrease the abundance of functional genes related to nitrification and denitrification processes. Moreover, EDU increased the abundance of genes involved in N-fixing. Although the abundance of some functional genes did not change significantly, nonmetric multidimensional scaling (NMDS) and a principal coordinates analysis (PCoA) suggested that the microbial community structure involved in N cycling was altered by EDU. The relative abundances of nifH-and norB-harboring microbial genera in the rhizosphere responded differently to EDU, suggesting the existence of functional redundancy, which may play a key role in sustaining microbially mediated N-cycling under ambient O3. IMPORTANCE Ethylenediurea (EDU) is hitherto the most efficient phytoprotectant agent against O3 stress. However, the underlying biological mechanisms of its mode of action are not clear, and the effects of EDU on the environment are still unknown, limiting its large-scale application in agriculture. Due to its sensitivity to environmental changes, the microbial community can be used as an indicator to assess the environmental impacts of agricultural practices on soil quality. This study aimed to unravel the effects of EDU spray on the abundance, community structure, and ecological functions of microbial communities in the rhizosphere of rice plants. Our study provides a deep insight into the impact of EDU spray on microbial-mediated N cycling and the structure of N-cycling microbial communities. Our findings help to elucidate the mode of action of EDU in alleviating O3 stress in crops from the perspective of regulating the structure and function of the rhizospheric soil microbial community.
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Affiliation(s)
- Qi Wang
- Key Laboratory of Ecosystem Carbon Source and Sink, China Meteorological Administration (ECSS-CMA), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
- Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters (CIC-FEMD), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Dan Wang
- Key Laboratory of Ecosystem Carbon Source and Sink, China Meteorological Administration (ECSS-CMA), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Evgenios Agathokleous
- Key Laboratory of Ecosystem Carbon Source and Sink, China Meteorological Administration (ECSS-CMA), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
- Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters (CIC-FEMD), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Cheng Cheng
- Key Laboratory of Ecosystem Carbon Source and Sink, China Meteorological Administration (ECSS-CMA), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Bo Shang
- Key Laboratory of Ecosystem Carbon Source and Sink, China Meteorological Administration (ECSS-CMA), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
- Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters (CIC-FEMD), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
| | - Zhaozhong Feng
- Key Laboratory of Ecosystem Carbon Source and Sink, China Meteorological Administration (ECSS-CMA), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
- Collaborative Innovation Center on Forecast and Evaluation of Meteorological Disasters (CIC-FEMD), Nanjing University of Information Science and Technology, Nanjing, Jiangsu, China
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63
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Quiza L, Tremblay J, Pagé AP, Greer CW, Pozniak CJ, Li R, Haug B, Hemmingsen SM, St-Arnaud M, Yergeau E. The effect of wheat genotype on the microbiome is more evident in roots and varies through time. ISME COMMUNICATIONS 2023; 3:32. [PMID: 37076737 PMCID: PMC10115884 DOI: 10.1038/s43705-023-00238-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Revised: 03/27/2023] [Accepted: 04/04/2023] [Indexed: 04/21/2023]
Abstract
Crop breeding has traditionally ignored the plant-associated microbial communities. Considering the interactions between plant genotype and associated microbiota is of value since different genotypes of the same crop often harbor distinct microbial communities which can influence the plant phenotype. However, recent studies have reported contrasting results, which led us to hypothesize that the effect of genotype is constrained by growth stages, sampling year and plant compartment. To test this hypothesis, we sampled bulk soil, rhizosphere soil and roots of 10 field-grown wheat genotypes, twice per year, for 4 years. DNA was extracted and regions of the bacterial 16 S rRNA and CPN60 genes and the fungal ITS region were amplified and sequenced. The effect of genotype was highly contingent on the time of sampling and on the plant compartment sampled. Only for a few sampling dates, were the microbial communities significantly different across genotypes. The effect of genotype was most often significant for root microbial communities. The three marker genes used provided a highly coherent picture of the effect of genotype. Taken together, our results confirm that microbial communities in the plant environment strongly vary across compartments, growth stages, and years, and that this can mask the effect of genotype.
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Affiliation(s)
- Liliana Quiza
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique, Laval, QC, Canada
| | - Julien Tremblay
- Energy, Mining, and Environment Research Centre, National Research Council Canada, Montréal, QC, Canada
| | - Antoine P Pagé
- Aquatic and Crop Resource Development Research Centre, National Research Council Canada, Saskatoon, SK, Canada
| | - Charles W Greer
- Energy, Mining, and Environment Research Centre, National Research Council Canada, Montréal, QC, Canada
| | | | - Rong Li
- Aquatic and Crop Resource Development Research Centre, National Research Council Canada, Saskatoon, SK, Canada
| | - Brenda Haug
- Aquatic and Crop Resource Development Research Centre, National Research Council Canada, Saskatoon, SK, Canada
| | - Sean M Hemmingsen
- Aquatic and Crop Resource Development Research Centre, National Research Council Canada, Saskatoon, SK, Canada
| | - Marc St-Arnaud
- Institut de recherche en biologie végétale, Université de Montréal and Jardin botanique de Montréal, 4101 rue Sherbrooke E., Montréal, QC, Canada
| | - Etienne Yergeau
- Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique, Laval, QC, Canada.
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64
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Yu J, Niu Y, You Y, Cox CJ, Barrett RL, Trias-Blasi A, Guo J, Wen J, Lu L, Chen Z. Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan-Hengduan Mountains. THE NEW PHYTOLOGIST 2023; 236:1140-1153. [PMID: 36305244 DOI: 10.1111/nph.18289] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 05/22/2022] [Indexed: 05/20/2023]
Abstract
Hybridization caused by frequent environmental changes can lead both to species diversification (speciation) and to speciation reversal (despeciation), but the latter has rarely been demonstrated. Parthenocissus, a genus with its trifoliolate lineage in the Himalayan-Hengduan Mountains (HHM) region showing perplexing phylogenetic relationships, provides an opportunity for investigating speciation dynamics based on integrated evidence. We investigated phylogenetic discordance and reticulate evolution in Parthenocissus based on rigorous analyses of plastome and transcriptome data. We focused on reticulations in the trifoliolate lineage in the HHM region using a population-level genome resequencing dataset, incorporating evidence from morphology, distribution, and elevation. Comprehensive analyses confirmed multiple introgressions within Parthenocissus in a robust temporal-spatial framework. Around the HHM region, at least three hybridization hot spots were identified, one of which showed evidence of ongoing speciation reversal. We present a solid case study using an integrative methodological approach to investigate reticulate evolutionary history and its underlying mechanisms in plants. It demonstrates an example of speciation reversal through frequent hybridizations in the HHM region, which provides new perspectives on speciation dynamics in mountainous areas with strong topographic and environmental heterogeneity.
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Affiliation(s)
- Jinren Yu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yanting Niu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- China National Botanical Garden, Beijing, 100093, China
| | - Yichen You
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Cymon J Cox
- Centro de Ciências do Mar, Universidade do Algarve, Gambelas, Faro, 8005-319, Portugal
| | - Russell L Barrett
- National Herbarium of New South Wales, Australian Botanic Garden, Locked Bag 6002, Mount Annan, 2567, NSW, Australia
| | | | - Jing Guo
- State Key Laboratory of Genetic Engineering and Collaborative Innovation Center of Genetics and Development, Ministry of Education Key Laboratory of Biodiversity and Ecological Engineering, Institute of Plant Biology, Center of Evolutionary Biology, School of Life Sciences, Fudan University, Shanghai, 200433, China
| | - Jun Wen
- Department of Botany, National Museum of Natural History, MRC-166, Smithsonian Institution, Washington, DC, 20013-7012, USA
| | - Limin Lu
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Zhiduan Chen
- State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
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65
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Yue H, Yue W, Jiao S, Kim H, Lee YH, Wei G, Song W, Shu D. Plant domestication shapes rhizosphere microbiome assembly and metabolic functions. MICROBIOME 2023; 11:70. [PMID: 37004105 PMCID: PMC10064753 DOI: 10.1186/s40168-023-01513-1] [Citation(s) in RCA: 25] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 03/07/2023] [Indexed: 05/23/2023]
Abstract
BACKGROUND The rhizosphere microbiome, which is shaped by host genotypes, root exudates, and plant domestication, is crucial for sustaining agricultural plant growth. Despite its importance, how plant domestication builds up specific rhizosphere microbiomes and metabolic functions, as well as the importance of these affected rhizobiomes and relevant root exudates in maintaining plant growth, is not well understood. Here, we firstly investigated the rhizosphere bacterial and fungal communities of domestication and wild accessions of tetraploid wheat using amplicon sequencing (16S and ITS) after 9 years of domestication process at the main production sites in China. We then explored the ecological roles of root exudation in shaping rhizosphere microbiome functions by integrating metagenomics and metabolic genomics approaches. Furthermore, we established evident linkages between root morphology traits and keystone taxa based on microbial culture and plant inoculation experiments. RESULTS Our results suggested that plant rhizosphere microbiomes were co-shaped by both host genotypes and domestication status. The wheat genomes contributed more variation in the microbial diversity and composition of rhizosphere bacterial communities than fungal communities, whereas plant domestication status exerted much stronger influences on the fungal communities. In terms of microbial interkingdom association networks, domestication destabilized microbial network and depleted the abundance of keystone fungal taxa. Moreover, we found that domestication shifted the rhizosphere microbiome from slow growing and fungi dominated to fast growing and bacteria dominated, thereby resulting in a shift from fungi-dominated membership with enrichment of carbon fixation genes to bacteria-dominated membership with enrichment of carbon degradation genes. Metagenomics analyses further indicated that wild cultivars of wheat possess higher microbial function diversity than domesticated cultivars. Notably, we found that wild cultivar is able to harness rhizosphere microorganism carrying N transformation (i.e., nitrification, denitrification) and P mineralization pathway, whereas rhizobiomes carrying inorganic N fixation, organic N ammonification, and inorganic P solubilization genes are recruited by the releasing of root exudates from domesticated wheat. More importantly, our metabolite-wide association study indicated that the contrasting functional roles of root exudates and the harnessed keystone microbial taxa with different nutrient acquisition strategies jointly determined the aboveground plant phenotypes. Furthermore, we observed that although domesticated and wild wheats recruited distinct microbial taxa and relevant functions, domestication-induced recruitment of keystone taxa led to a consistent growth regulation of root regardless of wheat domestication status. CONCLUSIONS Our results indicate that plant domestication profoundly influences rhizosphere microbiome assembly and metabolic functions and provide evidence that host plants are able to harness a differentiated ecological role of root-associated keystone microbiomes through the release of root exudates to sustain belowground multi-nutrient cycles and plant growth. These findings provide valuable insights into the mechanisms underlying plant-microbiome interactions and how to harness the rhizosphere microbiome for crop improvement in sustainable agriculture. Video Abstract.
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Affiliation(s)
- Hong Yue
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Xianyang, 712100, Shaanxi, China
| | - Wenjie Yue
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Xianyang, 712100, Shaanxi, China
| | - Shuo Jiao
- Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, Yangling, Xianyang, 712100, Shaanxi, China
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Xianyang, 712100, Shaanxi, China
| | - Hyun Kim
- Department of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Korea
| | - Yong-Hwan Lee
- Department of Agricultural Biotechnology, Seoul National University, Seoul, 08826, Korea
| | - Gehong Wei
- Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, Yangling, Xianyang, 712100, Shaanxi, China.
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Xianyang, 712100, Shaanxi, China.
| | - Weining Song
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy, Northwest A&F University, Yangling, Xianyang, 712100, Shaanxi, China.
| | - Duntao Shu
- Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, Yangling, Xianyang, 712100, Shaanxi, China.
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Xianyang, 712100, Shaanxi, China.
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66
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Papatheodorou EM, Papakostas S, Stamou GP. Fire and Rhizosphere Effects on Bacterial Co-Occurrence Patterns. Microorganisms 2023; 11:microorganisms11030790. [PMID: 36985363 PMCID: PMC10052084 DOI: 10.3390/microorganisms11030790] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 03/10/2023] [Accepted: 03/16/2023] [Indexed: 03/30/2023] Open
Abstract
Fires are common in Mediterranean soils and constitute an important driver of their evolution. Although fire effects on vegetation dynamics are widely studied, their influence on the assembly rules of soil prokaryotes in a small-scale environment has attracted limited attention. In the present study, we reanalyzed the data from Aponte et al. (2022) to test whether the direct and/or indirect effects of fire are reflected in the network of relationships among soil prokaryotes in a Chilean sclerophyllous ecosystem. We focused on bacterial (genus and species level) co-occurrence patterns in the rhizospheres and bulk soils in burned and unburned plots. Four soils were considered: bulk-burnt (BB), bulk-unburnt (BU), rhizosphere-burnt (RB), and rhizosphere-unburnt (RU). The largest differences in network parameters were recorded between RU and BB soils, while RB and BU networks exhibited similar values. The network in the BB soil was the most compact and centralized, while the RU network was the least connected, with no central nodes. The robustness of bacterial communities was enhanced in burnt soils, but this was more pronounced in BB soil. The mechanisms mainly responsible for bacterial community structure were stochastic in all soils, whether burnt or unburnt; however, communities in RB were much more stochastic than in RU.
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Affiliation(s)
| | - Spiros Papakostas
- Department of Science and Technology, School of Science and Technology, University Center of International Programmes of Studies, International Hellenic University, 57001 Thessaloniki, Greece
| | - George P Stamou
- Department of Ecology, School of Biology, AUTH, 54124 Thessaloniki, Greece
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67
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Rhizosphere Microbial Community and Metabolites of Susceptible and Resistant Tobacco Cultivars to Bacterial Wilt. J Microbiol 2023; 61:389-402. [PMID: 36881350 DOI: 10.1007/s12275-023-00012-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 12/16/2022] [Accepted: 12/19/2022] [Indexed: 03/08/2023]
Abstract
Soil-borne diseases are closely related to rhizosphere microecosystem. While, plant species and genotypes are important factors affected rhizosphere microecosystem. In this study, the rhizosphere soil microbial community and metabolites of susceptible and resistant tobacco cultivars were investigated. The results showed that there were significant differences in the rhizosphere microbial community and metabolites between susceptible cultivar Yunyan87 and resistant cultivar Fandi3. Furthermore, the rhizosphere soil of Fandi3 showed a higher microbial diversity than that of Yunyan87. The abundance of R. solanacearum was much higher in the rhizosphere soil of Yunyan87 than in the rhizosphere soil of Fandi3, resulting in a higher disease incidence and index. While the abundance of beneficial bacteria in the rhizosphere soil of Fandi3 were higher than that of Yunyan87. Additionally, there were significant differences in metabolites between Yunyan87 and Fandi3 cultivars, and 4-hydroxybenzaldehyde, 3-hydroxy-4-methoxybenzoic acid, vamillic aldehyde, benzoic acid, 4-hydroxybenzyl alcohol, p-hydroxybenzoic acid and phthalic acid were notably high in Yunyan87. Redundancy analysis (RDA) indicated that the rhizosphere microbial community of Fandi3 and Yunyan87 were highly correlated with various environmental factors and metabolites. Overall, susceptible and resistant tobacco cultivars had different impact on rhizosphere microbial community and metabolites. The results expand our understanding of the roles of tobacco cultivars in plant-micro-ecosystem interactions, and provide a basis for the control of tobacco bacterial wilt.
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68
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Zhang F, Xu N, Zhang Z, Zhang Q, Yang Y, Yu Z, Sun L, Lu T, Qian H. Shaping effects of rice, wheat, maize, and soybean seedlings on their rhizosphere microbial community. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:35972-35984. [PMID: 36539666 DOI: 10.1007/s11356-022-24835-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 12/14/2022] [Indexed: 06/17/2023]
Abstract
The rhizosphere microbiome plays critical roles in plant growth and is an important interface for resource exchange between plants and the soil environment. Crops at various growing stages, especially the seedling stage, have strong shaping effects on the rhizosphere microbial community, and such community reconstruction will positively feed back to the plant growth. In the present study, we analyzed the variations of bacterial and fungal communities in the rhizosphere of four crop species: rice, soybean, maize, and wheat during successive cultivations (three repeats for the seedling stages) using 16S rRNA gene and internal transcribed spacer (ITS) high-throughput sequencing. We found that the relative abundances of specific microorganisms decreased after different cultivation times, e.g., Sphingomonas, Pseudomonas, Rhodanobacter, and Caulobacter, which have been reported as plant-growth beneficial bacteria. The relative abundances of potential plant pathogenic fungi Myrothecium and Ascochyta increased with the successive cultivation times. The co-occurrence network analysis showed that the bacterial and fungal communities under maize were much more stable than those under rice, soybean, and wheat. The present study explored the characteristics of bacteria and fungi in crop seedling rhizosphere and indicated that the characteristics of indigenous soil flora might determine the plant growth status. Further study will focus on the use of the critical microorganisms to control the growth and yield of specific crops.
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Affiliation(s)
- Fan Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
| | - Nuohan Xu
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
| | - Zhenyan Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
| | - Qi Zhang
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
| | - Yaohui Yang
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
| | - Zhitao Yu
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
| | - Liwei Sun
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
| | - Tao Lu
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China.
| | - Haifeng Qian
- College of Environment, Zhejiang University of Technology, Hangzhou, 310014, People's Republic of China
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Liu Y, Xu F, Ding L, Zhang G, Bai B, Han Y, Xiao L, Song Y, Li Y, Wan S, Li G. Microplastics reduce nitrogen uptake in peanut plants by damaging root cells and impairing soil nitrogen cycling. JOURNAL OF HAZARDOUS MATERIALS 2023; 443:130384. [PMID: 36444071 DOI: 10.1016/j.jhazmat.2022.130384] [Citation(s) in RCA: 40] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 10/28/2022] [Accepted: 11/09/2022] [Indexed: 06/16/2023]
Abstract
Microplastic (MP) pollution severely impairs the sustainable development of modern agriculture. However, the mechanisms underlying the effects of MP contaminants on nutrient cycles in agroecosystems are poorly understood. In this study, we examined the impacts of two types of MPs, polypropylene (PP) and rubber crumb (RC), on nitrogen (N) transformation and N cycling in soil-peanut system. High concentrations of PP (1% w/w) and RC (1% w/w) inhibited vegetative growth and N uptake in peanut plants by damaging root cells and disturbing soil N cycling. These MPs damaged the plasma membranes of root cells and caused oxidative stress, as evidenced by the decreased number of xylem vessels, which in turn inhibited N uptake by roots. Integrated metagenomic and metabolomic analyses revealed that the differential soil metabolite levels in response to MP treatment affected the microbial community structure in the rhizosphere and the expression of key N cycling-related genes, resulting in altered N transformation and the decreased availability of N in rhizosphere soil. These findings provide the first evidence of the effects of MPs on N uptake in peanut plants and shed light on the importance of rational management of MPs for crop growth and yield in agroecosystems.
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Affiliation(s)
- Yiyang Liu
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Fangji Xu
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Liping Ding
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Guanchu Zhang
- Shandong Peanut Research Institute, No.126, Wannianquan Road, Licang District, Qingdao 266100, China
| | - Bo Bai
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Yan Han
- Shandong Academy of Grape, Jinan 250199, China
| | - Lina Xiao
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Yan Song
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Ying Li
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Shubo Wan
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China.
| | - Guowei Li
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China.
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Guo Q, Ye J, Zeng J, Chen L, Korpelainen H, Li C. Selenium species transforming along soil-plant continuum and their beneficial roles for horticultural crops. HORTICULTURE RESEARCH 2023; 10:uhac270. [PMID: 36789256 PMCID: PMC9923214 DOI: 10.1093/hr/uhac270] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 12/01/2022] [Indexed: 05/15/2023]
Abstract
Selenium (Se) acquirement from daily diet can help reduce the risk of many diseases. The edible parts of crop plants are the main source of dietary Se, while the Se content in crops is determined by Se bioavailability in soil. We summarize recent research on the biogeochemical cycle of Se driven by specific microorganisms and emphasize the oxidizing process in the Se cycle. Moreover, we discuss how plant root exudates and rhizosphere microorganisms affect soil Se availability. Finally, we cover beneficial microorganisms, including endophytes, that promote crop quality and improve crop tolerance to environmental stresses. Se availability to plants depends on the balance between adsorption and desorption, reduction, methylation and oxidation, which are determined by interactions among soil properties, microbial communities and plants. Reduction and methylation processes governed by bacteria or fungi lead to declined Se availability, while Se oxidation regulated by Se-oxidizing microorganisms increases Se availability to plants. Despite a much lower rate of Se oxidization compared to reduction and methylation, the potential roles of microbial communities in increasing Se bioavailability are probably largely underestimated. Enhancing Se oxidation and Se desorption are crucial for the promotion of Se bioavailability and uptake, particularly in Se-deficient soils. Beneficial roles of Se are reported in terms of improved crop growth and quality, and enhanced protection against fungal diseases and abiotic stress through improved photosynthetic traits, increased sugar and amino acid contents, and promoted defense systems. Understanding Se transformation along the plant-soil continuum is crucial for agricultural production and even for human health.
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Affiliation(s)
- Qingxue Guo
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China
| | - Jianhui Ye
- College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Jianming Zeng
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310008, China
| | - Liang Chen
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310008, China
| | - Helena Korpelainen
- Department of Agricultural Sciences, Viikki Plant Science Centre, University of Helsinki, P.O. Box 27, FI-00014, Finland
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Lei X, Shen Y, Zhao J, Huang J, Wang H, Yu Y, Xiao C. Root Exudates Mediate the Processes of Soil Organic Carbon Input and Efflux. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12030630. [PMID: 36771714 PMCID: PMC9919716 DOI: 10.3390/plants12030630] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Revised: 01/26/2023] [Accepted: 01/30/2023] [Indexed: 05/31/2023]
Abstract
Root exudates, as an important form of material input from plants to the soil, regulate the carbon input and efflux of plant rhizosphere soil and play an important role in maintaining the carbon and nutrient balance of the whole ecosystem. Root exudates are notoriously difficult to collect due to their underlying characteristics (e.g., low concentration and fast turnover rate) and the associated methodological challenges of accurately measuring root exudates in native soils. As a result, up until now, it has been difficult to accurately quantify the soil organic carbon input from root exudates to the soil in most studies. In recent years, the contribution and ecological effects of root exudates to soil organic carbon input and efflux have been paid more and more attention. However, the ecological mechanism of soil organic carbon input and efflux mediated by root exudates are rarely analyzed comprehensively. In this review, the main processes and influencing factors of soil organic carbon input and efflux mediated by root exudates are demonstrated. Soil minerals and soil microbes play key roles in the processes. The carbon allocation from plants to soil is influenced by the relationship between root exudates and root functional traits. Compared with the quantity of root exudates, the response of root exudate quality to environmental changes affects soil carbon function more. In the future, the contribution of root exudates in different plants to soil carbon turnover and their relationship with soil nutrient availability will be accurately quantified, which will be helpful to understand the mechanism of soil organic carbon sequestration.
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Affiliation(s)
- Xue Lei
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Yuting Shen
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Jianing Zhao
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jiajia Huang
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Hui Wang
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Yang Yu
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
| | - Chunwang Xiao
- College of Life and Environmental Sciences, Minzu University of China, Beijing 100081, China
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72
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Lv C, Wang C, Cai A, Zhou Z. Global magnitude of rhizosphere effects on soil microbial communities and carbon cycling in natural terrestrial ecosystems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 856:158961. [PMID: 36155049 DOI: 10.1016/j.scitotenv.2022.158961] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 08/31/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
The rhizosphere is one of the most dynamic interfaces on the Earth. Understanding the magnitudes of rhizosphere effects (RE, difference in bio-physicochemical properties between rhizosphere and bulk soils) on soil microbial communities and their moderators is important for studying on below-ground carbon (C) cycling. A comprehensive meta-analysis was conducted to quantify the REs on soil microbial biomass, community structure, respiration, and C-degrading enzymes. We found that REs on soil C and nutrients, total microbial biomass, the abundance of specific microbial groups, fungi to bacteria ratio, respiration, and C-degrading enzymes were positive, but the magnitudes were varied with biomes, plant functional types, and mycorrhizal types. REs on microbial biomass, respiration, and C-degrading enzymes increased with the increase of mean annual temperature and mean annual precipitation, but decreased with the increase of soil clay, C, nitrogen (N), and phosphorus (P) contents. The REs on microbial biomass and respiration also increased as the REs on soil C:N:P increased. Compared with bulk soil, per unit rhizosphere soil C supported more microbial biomass, per unit of which respired more C, leading to faster C decomposition in rhizosphere. Our findings indicate that the increase in microbial biomass, co-metabolism induced by labile and energy-rich organic C of root exudates, and overflow respiration induced by stoichiometric imbalance together contribute to the enhanced C decomposition in rhizosphere. The global pattern of REs on soil microbial communities is critical to revealing the plant-microbe-soil interactions in terrestrial ecosystems.
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Affiliation(s)
- Chunhua Lv
- Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China
| | - Chuankuan Wang
- Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China
| | - Andong Cai
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing 10081, China
| | - Zhenghu Zhou
- Center for Ecological Research, Key Laboratory of Sustainable Forest Ecosystem Management, Ministry of Education, Northeast Forestry University, 26 Hexing Road, Harbin 150040, China.
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73
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Wang J, Li M, Zhou Q, Zhang T. Effects of continuous cropping Jiashi muskmelon on rhizosphere microbial community. Front Microbiol 2023; 13:1086334. [PMID: 36699602 PMCID: PMC9868712 DOI: 10.3389/fmicb.2022.1086334] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 12/22/2022] [Indexed: 01/11/2023] Open
Abstract
Introduction The continuous cropping of crops can result in the deterioration of the soil environment and cause a decline in plant health and yield, which complicates agricultural production. However, the effects of continuous melon cropping on rhizospheric microbial communities remain poorly understood. Methods In this study, high-throughput absolute quantification 16S rRNA gene amplicon sequencing was employed to analyze the bacterial community structure of greenhouse rhizosphere soil from Jiashi muskmelon replanted for 0, 1, 2, and 3 years (CK, 1a, 2a, and 3a, respectively). Results The results showed that long- term continuous cropping caused significant changes in soil physicochemical properties. The bacterial absolute abundances increased, but the bacterial community richness and diversity were significantly lost (p < 0.05). The composition of bacterial community was more similar after 2 and 3 years of continuous cropping. The longer the continuous cropping years were, the greater the shift in the bacterial diversity and abundance. Analysis of potential functional components revealed that different bacterial groups were enriched in different continuous cropping years. The significant reduction of the taxa associated with nitrate reduction may be responsible for the loss of soil nitrogen in continuous cropping soil. Discussion In summary, continuous cropping had a significant impact on the bacterial community structure of Jiashi muskmelon rhizospheric soil, and these results will provide a reference for soil management and scientific fertilization of melon and other crops under a continuous cropping regime.
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Affiliation(s)
- Jilian Wang
- Department of Biologic and Geographic Sciences, Kashi University, Kashi, China,Key Laboratory of Biological Resources and Ecology of Pamirs Plateau in Xinjiang Uygur Autonomous Region, Kashi, China
| | - Mingyuan Li
- Department of Biologic and Geographic Sciences, Kashi University, Kashi, China,Key Laboratory of Biological Resources and Ecology of Pamirs Plateau in Xinjiang Uygur Autonomous Region, Kashi, China,*Correspondence: Mingyuan Li,
| | - Qian Zhou
- Department of Biologic and Geographic Sciences, Kashi University, Kashi, China,Key Laboratory of Biological Resources and Ecology of Pamirs Plateau in Xinjiang Uygur Autonomous Region, Kashi, China
| | - Tian Zhang
- Department of Biologic and Geographic Sciences, Kashi University, Kashi, China,Key Laboratory of Biological Resources and Ecology of Pamirs Plateau in Xinjiang Uygur Autonomous Region, Kashi, China
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74
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Rascio I, Gattullo CE, Porfido C, Allegretta I, Spagnuolo M, Tiziani R, Celletti S, Cesco S, Mimmo T, Terzano R. Fire-induced effects on the bioavailability of potentially toxic elements in a polluted agricultural soil: implications for Cr uptake by durum wheat plants. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:6358-6372. [PMID: 35997877 PMCID: PMC9895035 DOI: 10.1007/s11356-022-22471-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Accepted: 08/06/2022] [Indexed: 06/15/2023]
Abstract
Fire events can modify the distribution and speciation of potentially toxic elements (PTEs) in soil, especially if they are associated to organic matter (OM). In fact, OM can undergo substantial structural modifications at high temperatures, up to the complete mineralization. The present study aims to investigate the changes of PTEs' bioavailability to durum wheat (Triticum durum Desf.) plants after simulating fire events (up to 300 °C and 500 °C) in an agricultural soil polluted by Cr, Zn, Cu, and Pb. The PTEs' uptake and allocation in plant tissues were assessed using the RHIZOtest system. After the fire simulations, no evident risk of accumulation and translocation in plants was observed for Zn, Pb, and Cu. Conversely, a high accumulation in roots and a significant translocation to shoots were observed for Cr, which reached concentrations of 829 mg kg-1 in roots and 52 mg kg-1 in shoots at 500 °C. Additional experimental evidence suggested that Cr was taken up by plants grown on heated soils as Cr(VI). Once acquired by roots, only a small part of Cr (up to 6%) was translocated to shoots where it was likely present as mobile forms, as evidenced by micro X-ray fluorescence (µ-XRF) analyses. Overall, the results obtained provide evidence that the high temperatures occurring during fire events can increase the mobility and bioavailability of certain PTEs transforming apparently safe environments into potentially dangerous sources of pollution. These processes can ultimately affect the human health through the food chain transfer of PTEs or their migration into surface water and groundwater.
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Affiliation(s)
- Ida Rascio
- Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", Via G. Amendola n. 165/A, 70126, Bari, Italy
| | - Concetta Eliana Gattullo
- Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", Via G. Amendola n. 165/A, 70126, Bari, Italy.
| | - Carlo Porfido
- Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", Via G. Amendola n. 165/A, 70126, Bari, Italy
| | - Ignazio Allegretta
- Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", Via G. Amendola n. 165/A, 70126, Bari, Italy
| | - Matteo Spagnuolo
- Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", Via G. Amendola n. 165/A, 70126, Bari, Italy
| | - Raphael Tiziani
- Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università n. 5, 39100, Bolzano, Italy
| | - Silvia Celletti
- Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università n. 5, 39100, Bolzano, Italy
| | - Stefano Cesco
- Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università n. 5, 39100, Bolzano, Italy
| | - Tanja Mimmo
- Faculty of Science and Technology, Free University of Bozen-Bolzano, Piazza Università n. 5, 39100, Bolzano, Italy
| | - Roberto Terzano
- Department of Soil, Plant and Food Sciences, University of Bari "Aldo Moro", Via G. Amendola n. 165/A, 70126, Bari, Italy
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75
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Fernández-Guisuraga JM, Calvo L, Ansola G, Pinto R, Sáenz de Miera LE. The effect of sheep grazing abandonment on soil bacterial communities in productive mountain grasslands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 851:158398. [PMID: 36049688 DOI: 10.1016/j.scitotenv.2022.158398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 08/25/2022] [Accepted: 08/25/2022] [Indexed: 06/15/2023]
Abstract
Livestock grazing abandonment entails important shifts on the overall ecosystem function, but the effects of this land-use change on specific bacterial taxa remain poorly understood in mountain grasslands. Moreover, we currently lack knowledge about the feedbacks between changes in ecosystem functions affected by livestock abandonment in mountain grasslands and the soil bacterial communities. Here, we evaluated the behavior of bacterial communities' structure and composition at taxa level as a function of short (1-year) and long-term (15-years) grazing abandonment in a mountain grassland. We also linked the observed responses in the bacterial communities to changes in several ecosystem functions (i.e. primary production, plant species biodiversity, carbon stocks and soil fertility). The alpha diversity of the bacterial communities did not show a significant response as a consequence of grazing abandonment. However, we identified significant changes on the overall composition of soil bacterial communities between the long-term abandoned grassland areas and grazed or abandoned areas in the short term. We also evidenced a balance between the number of operational taxonomic units (OTUs) whose relative abundance is favored by livestock grazing (19.51 %) and those with higher relative abundances in long-term grazing exclusion areas (20.23 %) that could behave as indicators of grazing abandonment. Structural Equation Modeling analyses proved that several bacterial taxa associated with relevant ecosystem functions, such as Rhodospirillales order within Alphaproteobacteria phylum, featured significant changes in their relative abundance between grazing treatments. The direct and indirect effects of grazing exclusion on woody species encroachment and soil organic carbon were strongly linked to the changes in the abundance of bacterial taxa indicators. The assessment of the bacterial community response to livestock abandonment in mountain grasslands may thus provide early warning signs before subtle changes in ecosystem functions occur.
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Affiliation(s)
- José Manuel Fernández-Guisuraga
- Department of Biodiversity and Environmental Management, Faculty of Biological and Environmental Sciences, University of León, 24071 León, Spain.
| | - Leonor Calvo
- Department of Biodiversity and Environmental Management, Faculty of Biological and Environmental Sciences, University of León, 24071 León, Spain
| | - Gemma Ansola
- Department of Biodiversity and Environmental Management, Faculty of Biological and Environmental Sciences, University of León, 24071 León, Spain
| | - Rayo Pinto
- Department of Biodiversity and Environmental Management, Faculty of Biological and Environmental Sciences, University of León, 24071 León, Spain
| | - Luis E Sáenz de Miera
- Department of Molecular Biology, Faculty of Biological and Environmental Sciences, University of León, 24071 León, Spain
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Ulrich DEM, Clendinen CS, Alongi F, Mueller RC, Chu RK, Toyoda J, Gallegos-Graves LV, Goemann HM, Peyton B, Sevanto S, Dunbar J. Root exudate composition reflects drought severity gradient in blue grama (Bouteloua gracilis). Sci Rep 2022; 12:12581. [PMID: 35869127 PMCID: PMC9307599 DOI: 10.1038/s41598-022-16408-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 07/11/2022] [Indexed: 12/22/2022] Open
Abstract
Plant survival during environmental stress greatly affects ecosystem carbon (C) cycling, and plant–microbe interactions are central to plant stress survival. The release of C-rich root exudates is a key mechanism plants use to manage their microbiome, attracting beneficial microbes and/or suppressing harmful microbes to help plants withstand environmental stress. However, a critical knowledge gap is how plants alter root exudate concentration and composition under varying stress levels. In a greenhouse study, we imposed three drought treatments (control, mild, severe) on blue grama (Bouteloua gracilis Kunth Lag. Ex Griffiths), and measured plant physiology and root exudate concentration and composition using GC–MS, NMR, and FTICR. With increasing drought severity, root exudate total C and organic C increased concurrently with declining predawn leaf water potential and photosynthesis. Root exudate composition mirrored the physiological gradient of drought severity treatments. Specific compounds that are known to alter plant drought responses and the rhizosphere microbiome mirrored the drought severity-induced root exudate compositional gradient. Despite reducing C uptake, these plants actively invested C to root exudates with increasing drought severity. Patterns of plant physiology and root exudate concentration and composition co-varied along a gradient of drought severity.
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77
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Shuang M, Sun J, Teng W. Identification and growth-promoting effect of endophytic bacteria in potato. ANN MICROBIOL 2022. [DOI: 10.1186/s13213-022-01697-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
AbstractIn agriculture, Bacillus
species are efficient and ecologically tool for promote the growth of the
plant.Purpose: This study obtains the plant growth-promoting (PGP) ability of
endophytic bacteria isolated from the potato tubers.Methods: Using endophytic
bacteria to promote potato growth, achieve the purpose of increasing production.
In this experiment, the growth- promoting ability of the strain was verified by
laboratory identification and field test validation.Result: The isolates
were identified as Bacillus species based on a 16S rRNA gene sequence
and gyrB gene sequence analysis. DNA hybridization finally identified it as Bacillus
velezensis. Among the PGP attributes, the strain K-9 was found to be positive
for indole acetic acid (IAA) production, phosphate solubilization, siderophore
production, and nitrogen fixation. The isolate was found negative for potassium
solubilization. The quantitative estimation of IAA product to 9.09 μg/ml. The
isolate also had the ability to produce lytic enzymes such as amylase and
protease. The quantitative estimation of protease activity is 89.16 μg/ml. The inoculation strain K-9 improved bioaccumulation of roots
and buds and yield in the potato compared to uninoculated control plants.Conclusion: These findings give an insight into the ways to use PGP bacteria to increase
potato production.
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78
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Ye L, Wang X, Wei S, Zhu Q, He S, Zhou L. Dynamic analysis of the microbial communities and metabolome of healthy banana rhizosphere soil during one growth cycle. PeerJ 2022; 10:e14404. [PMID: 36420134 PMCID: PMC9677880 DOI: 10.7717/peerj.14404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Accepted: 10/26/2022] [Indexed: 11/21/2022] Open
Abstract
Background The banana-growing rhizosphere soil ecosystem is very complex and consists of an entangled network of interactions between banana plants, microbes and soil, so identifying key components in banana production is difficult. Most of the previous studies on these interactions ignore the role of the banana plant. At present, there is no research on the the micro-ecological environment of the banana planting growth cycle. Methods Based on high-throughput sequencing technology and metabolomics technology, this study analyzed the rhizosphere soil microbial community and metabolic dynamics of healthy banana plants during one growth cycle. Results Assessing the microbial community composition of healthy banana rhizosphere soil, we found that the bacteria with the highest levels were Proteobacteria, Chloroflexi, and Acidobacteria, and the dominant fungi were Ascomycota, Basidiomycota, and Mortierellomycota. The metabolite profile of healthy banana rhizosphere soil showed that sugars, lipids and organic acids were the most abundant, accounting for about 50% of the total metabolites. The correlation network between fungi and metabolites was more complex than that of bacteria and metabolites. In a soil environment with acidic pH, bacterial genera showed a significant negative correlation with pH value, while fungal genera showed no significant negative correlation with pH value. The network interactions between bacteria, between fungi, and between bacteria and fungi were all positively correlated. Conclusions Healthy banana rhizosphere soil not only has a stable micro-ecology, but also has stable metabolic characteristics. The microorganisms in healthy banana rhizosphere soil have mutually beneficial rather than competitive relationships.
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Affiliation(s)
- Liujian Ye
- Guangxi Biological Science and Technology Research Center, Guangxi Academy of Sciences, Nanning, China,State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Academy of Sciences, Nanning, China,National Engineering Research Center for Non-Food Biorefinery, Guangxi Academy of Sciences, Nanning, China
| | - Xiaohu Wang
- Guangxi Biological Science and Technology Research Center, Guangxi Academy of Sciences, Nanning, China,State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Academy of Sciences, Nanning, China,National Engineering Research Center for Non-Food Biorefinery, Guangxi Academy of Sciences, Nanning, China
| | - Shengbo Wei
- Guangxi Biological Science and Technology Research Center, Guangxi Academy of Sciences, Nanning, China,State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Academy of Sciences, Nanning, China,National Engineering Research Center for Non-Food Biorefinery, Guangxi Academy of Sciences, Nanning, China
| | - Qixia Zhu
- Guangxi Biological Science and Technology Research Center, Guangxi Academy of Sciences, Nanning, China,State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Academy of Sciences, Nanning, China,National Engineering Research Center for Non-Food Biorefinery, Guangxi Academy of Sciences, Nanning, China
| | - Shuang He
- Guangxi Biological Science and Technology Research Center, Guangxi Academy of Sciences, Nanning, China,State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Academy of Sciences, Nanning, China,National Engineering Research Center for Non-Food Biorefinery, Guangxi Academy of Sciences, Nanning, China
| | - Liqin Zhou
- Guangxi Biological Science and Technology Research Center, Guangxi Academy of Sciences, Nanning, China,State Key Laboratory of Non-Food Biomass and Enzyme Technology, Guangxi Academy of Sciences, Nanning, China,National Engineering Research Center for Non-Food Biorefinery, Guangxi Academy of Sciences, Nanning, China
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Li M, Zhou J, Lang X, Han D, Hu Y, Ding Y, Wang G, Guo J, Shi L. Integrating transcriptomic and metabolomic analysis in roots of wild soybean seedlings in response to low-phosphorus stress. FRONTIERS IN PLANT SCIENCE 2022; 13:1006806. [PMID: 36466240 PMCID: PMC9713585 DOI: 10.3389/fpls.2022.1006806] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 10/28/2022] [Indexed: 06/17/2023]
Abstract
INTRODUCTION Plants undergo divergent adaptations to form different ecotypes when exposed to different habitats. Ecotypes with ecological adaptation advantages are excellent germplasm resources for crop improvement. METHODS his study comprehensively compared the differences in morphology and physiological mechanisms in the roots of two different ecotypes of wild soybean (Glycine soja) seedlings under artificially simulated low-phosphorus (LP) stress. RESULT The seedlings of barren-tolerant wild soybean (GS2) suffered less damage than common wild soybean (GS1). GS2 absorbed more phosphorus (P) by increasing root length. In-depth integrated analyses of transcriptomics and metabolomics revealed the formation process of the ecological adaptability of the two different ecotypes wild soybean from the perspective of gene expression and metabolic changes. This study revealed the adaptation process of GS2 from the perspective of the adaptation of structural and molecular metabolism, mainly including: (1) Enhancing the metabolism of phenolic compounds, lignin, and organic acid metabolism could activate unavailable soil P; (2) Up-regulating genes encoding pectinesterase and phospholipase C (PLC) specifically could promote the reuse of structural P; (3) Some factors could reduce the oxidative damage to the membranes caused by LP stress, such as accumulating the metabolites putrescine and ascorbate significantly, up-regulating the genes encoding SQD2 (the key enzyme of sulfolipid substitution of phospholipids) substantially and enhancing the synthesis of secondary antioxidant metabolite anthocyanins and the AsA-GSH cycle; (4) enhancing the uptake of soil P by upregulating inorganic phosphate transporter, acid phosphatase ACP1, and purple acid phosphatase genes; (5) HSFA6b and MYB61 are the key TFs to resist LP stress. DISCUSSION In general, GS2 could resist LP stress by activating unavailable soil P, reusing plant structural P, rebuilding membrane lipids, and enhancing the antioxidant membrane protection system. Our study provides a new perspective for the study of divergent adaptation of plants.
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Affiliation(s)
- Mingxia Li
- School of Life Sciences, Changchun Normal University, Changchun, China
| | - Ji Zhou
- Land Consolidation and Rehabilitation Centre, The Ministry of Land and Resources, Beijing, China
| | - Xianyu Lang
- School of Life Sciences, Changchun Normal University, Changchun, China
| | - Defu Han
- School of Life Sciences, Changchun Normal University, Changchun, China
| | - Yongjun Hu
- School of Life Sciences, Changchun Normal University, Changchun, China
| | - Yinan Ding
- School of Life Sciences, Changchun Normal University, Changchun, China
| | - Guangye Wang
- School of Life Sciences, Changchun Normal University, Changchun, China
| | - Jixun Guo
- Institute of Grassland Science, Northeast Normal University, Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, China
| | - Lianxuan Shi
- Institute of Grassland Science, Northeast Normal University, Key Laboratory of Vegetation Ecology, Ministry of Education, Changchun, China
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80
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He Y, Zhu Z, Zhou Z, Lu T, Kumar A, Xia Z. Foliar application of lambda-cyhalothrin modulates root exudate profile and the rhizosphere bacteria community of dioecious Populus cathayana. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 313:120123. [PMID: 36087893 DOI: 10.1016/j.envpol.2022.120123] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 08/24/2022] [Accepted: 09/03/2022] [Indexed: 06/15/2023]
Abstract
Dioecious plants show sexual differences in resistance traits to abiotic stresses. However, the effects of exogenous pesticide application on female and male plant growth and their associated adaptation mechanisms are unclear. Our study investigated the effects of the broad-spectrum pesticide lambda-cyhalothrin (λ-CY) on dioecious Populus cathayana growth and explored the factors through which λ-CY changed the rhizosphere bacterial community and physicochemical soil properties via sex-specific metabolomics. The sequential application of λ-CY significantly suppressed male shoot- and root biomass, with little effect on the growth of females. Females possessed a higher intrinsic chemo-diversity within their root exudates, and their levels of various metabolites (sugars, fatty acids, and small organic acids) increased after exposure to λ-CY with consequences on bacterial community composition. Maintaining high bacterial alpha diversity and recruiting specific bacterial groups slowed down the loss of rhizosphere nutrients in females. In contrast, the reduction in bacterial alpha diversity and network structure stability in males was associated with lower rhizosphere nutrient availability. Spearman's correlation analysis revealed that several bacterial groups were positively correlated with the root secretion of lipids and organic acids, suggesting that these metabolites can affect the soil bacterial groups actively involved in the nutrient pool. This study provided novel insights that root exudates and soil microbial interactions may mediate sex-specific differences in response to pesticide application.
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Affiliation(s)
- Yue He
- School of Forestry & Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China; College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 311121, China
| | - Zuodong Zhu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 311121, China
| | - Zhenghu Zhou
- Center for Ecological Research, Northeast Forestry University, 26 Hexing Road, Harbin, 150040, China; Key Laboratory of Sustainable Forest Ecosystem Management - Ministry of Education, Northeast Forestry University, Harbin, 150040, China
| | - Tao Lu
- College of Environment, Zhejiang University of Technology, Hangzhou, 310032, China
| | - Amit Kumar
- Institute of Ecology, Leuphana University of Lüneburg, Universitätsallee 1, 21335, Lüneburg, Germany
| | - Zhichao Xia
- School of Forestry & Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China; College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, 311121, China.
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81
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Wu S, Wang R, Zhu H, Wang Y, Du Y, Zhu S, Zhao N. Changes in root chemical diversity along an elevation gradient of Changbai Mountain, China. FRONTIERS IN PLANT SCIENCE 2022; 13:897838. [PMID: 36420024 PMCID: PMC9676470 DOI: 10.3389/fpls.2022.897838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 10/11/2022] [Indexed: 06/16/2023]
Abstract
Root chemical traits play a critical role in plant resource use strategies and ecosystem nutrient cycling; however, the chemical diversity of multiple elements of fine root and community chemical assembly belowground are poorly understood. Here, we measured 13 elements (C, N, K, Ca, Mg, S, P, Al, Fe, Na, Mn, Zn, and Cu) in the fine roots of 204 plant species along elevational transect from 540 to 2357 m of Changbai Mountain, China to explore the variation, diversity, and community assembly of root chemical traits. At the species level, the concentrations of macronutrients (N, K, Ca, Mg, S, and P) decreased, whereas the trace metals (Fe, Mn, and Zn) increased with elevation. Root chemical traits at the community level systematically shifted along elevational gradients showing a pattern similar to that at the species level, which were mainly influenced by climate and soil rather than species diversity. In general, the interactions of climate and soil were the main drivers of root chemical assembly for woody layers, whereas soil factors played significant role for root chemical assembly for herb layer. The chemical assembly of rock-derived element P was mainly driven by soil factors. Meanwhile, root chemical diversities were mainly regulated by species diversity, the interactions of climate and soil, and soil factors in the tree, shrub, and herb layers, respectively. A better understanding of plant root chemical diversity and community chemical assembly will help to reveal the role of chemical traits in ecosystem functioning.
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Affiliation(s)
- Shihua Wu
- State Key Laboratory of Grassland Agroecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Ruili Wang
- College of Forestry, Northwest A&F University, Yangling, China
| | - Haihua Zhu
- State Key Laboratory of Grassland Agroecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Yuan Wang
- State Key Laboratory of Grassland Agroecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Yanyan Du
- State Key Laboratory of Grassland Agroecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Sihao Zhu
- State Key Laboratory of Grassland Agroecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
| | - Ning Zhao
- State Key Laboratory of Grassland Agroecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China
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Yang C, Xie Z, Qian S, Zhang J, Yu Z, Li M, Gu L, Qin S, Zhang Z. Functional analysis of Rehmannia glutinosa key LRR-RLKs during interaction of root exudates with Fusarium oxysporum reveals the roles of immune proteins in formation of replant disease. FRONTIERS IN PLANT SCIENCE 2022; 13:1044070. [PMID: 36388607 PMCID: PMC9660255 DOI: 10.3389/fpls.2022.1044070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
Previous studies have indicated that some Rehmannia glutinosa Leucine-rich repeat receptor-like protein kinases (LRR-RLKs) are involved in the formation of replant disease. However, it remains unclear how the interaction of LRR-RLKs with a key factor, the interaction between root exudates and Fusarium oxysporum, results in formation of replant disease. In this study, the influences of root exudates, F. oxysporum and the interaction of these two factors on expression of nine R. glutinosa LRR-RLKs (RgLRRs) were analyzed. The resulting eight RgLRRs of them were highly expressed at the early stage, and rapidly declined at later stages under mixed treatment of root exudates and F. oxysporum. The functions of nine RgLRRs under root exudates, F. oxysporum and mixed treatment of root exudates and F. oxysporum were preliminarily analyzed using transient overexpression and RNAi experiments. The results showed that high expression of RgLRR19, RgLRR21, RgLRR23 and RgLRR29 could decrease the damage to root cells from the mixed treatment of root exudates and F. oxysporum, but the interference of these genes enhanced the damage levels of root cells. Based on this, stable transgenic R. glutinosa seedlings were acquired. Overexpression of RgLRR29 conferred resistance of R. glutinosa seedlings to root exudates, F. oxysporum and mixed treatment. These results indicated that the continuous proliferation of F. oxysporum supported by root exudates altered the expression patterns of RgLRRs in R. glutinosa, then disordered the growth and development of R. glutinosa, finally leading to the formation of replant disease.
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Affiliation(s)
- Chuyun Yang
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Zhuomi Xie
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Sheng Qian
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Junyi Zhang
- College of Chemical Engineering, Huaqiao University, Xiamen, China
| | - Zhijian Yu
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Mingjie Li
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Li Gu
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Shuangshuang Qin
- Guangxi Key Laboratory of Medicinal Resources Protection and Genetic Improvement, Guangxi Botanical Garden of Medicinal Plant, Nanning, China
| | - Zhongyi Zhang
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou, China
- Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fuzhou, China
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83
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Deng C, Liang X, Zhang N, Li B, Wang X, Zeng N. Molecular mechanisms of plant growth promotion for methylotrophic Bacillus aryabhattai LAD. Front Microbiol 2022; 13:917382. [PMID: 36353455 PMCID: PMC9637944 DOI: 10.3389/fmicb.2022.917382] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 10/10/2022] [Indexed: 11/30/2022] Open
Abstract
Plant growth-promoting rhizobacteria (PGPR) can produce hormone-like substances, promote plant nutrient uptake, enhance plant resistance, inhibit the growth of pathogenic bacteria, and induce plant resistance to biotic and abiotic stresses. Bacillus is one of the most studied genera that promote plant root development. Since its discovery in 2009, B. aryabhattai has shown promising properties such as promoting plant growth and improving crop yield. However, the mechanisms of B. aryabhattai promoting plant growth remain to be investigated. In this study, the chromosome of B. aryabhattai strain LAD and five plasmids within the cell were sequenced and annotated. The genome, with a length of 5,194,589 bp and 38.12% GC content, contains 5,288 putative protein-coding genes, 39 rRNA, and 112 tRNA. The length of the five plasmids ranged from 116,519 to 212,484 bp, and a total of 810 putative protein-coding genes, 4 rRNA, and 32 tRNA were predicted in the plasmids. Functional annotation of the predicted genes revealed numerous genes associated with indole-3 acetic acid (IAA) and exopolysaccharides (EPSs) biosynthesis, membrane transport, nitrogen cycle metabolism, signal transduction, cell mobility, stress response, and antibiotic resistance on the genome which benefits the plants. Genes of carbohydrate-active enzymes were detected in both the genome and plasmids suggesting that LAD has the capacity of synthesizing saccharides and utilizing organic materials like root exudates. LAD can utilize different carbon sources of varied carbon chain length, i.e., methanol, acetate, glycerol, glucose, sucrose, and starch for growth and temperature adaptation suggesting a high versatility of LAD for thriving in fluctuating environments. LAD produced the most EPSs with sucrose as sole carbon source, and high concentration of IAA was produced when the maize plant was cultivated with LAD, which may enhance plant growth. LAD significantly stimulated the development of the maize root. The genome-based information and experimental evidence demonstrated that LAD with diverse metabolic capabilities and positive interactions with plants has tremendous potential for adaptation to the dynamic soil environments and promoting plant growth.
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Affiliation(s)
- Chao Deng
- College of Land and Environment, Shenyang Agricultural University, Shenyang, China
| | - Xiaolong Liang
- Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, China
| | - Ning Zhang
- College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang, China
- Ning Zhang,
| | - Bingxue Li
- College of Land and Environment, Shenyang Agricultural University, Shenyang, China
- *Correspondence: Bingxue Li,
| | - Xiaoyu Wang
- College of Land and Environment, Shenyang Agricultural University, Shenyang, China
| | - Nan Zeng
- College of Land and Environment, Shenyang Agricultural University, Shenyang, China
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84
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Bennion LD, Ward D. Plant-soil feedback from eastern redcedar ( Juniperus virginiana) inhibits the growth of grasses in encroaching range. Ecol Evol 2022; 12:e9400. [PMID: 36311395 PMCID: PMC9596334 DOI: 10.1002/ece3.9400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Revised: 09/05/2022] [Accepted: 09/20/2022] [Indexed: 11/22/2022] Open
Abstract
The encroachment of woody plants into grasslands is an ongoing global problem that is largely attributed to anthropogenic factors such as climate change and land management practices. Determining the mechanisms that drive successful encroachment is a critical step towards planning restoration and long‐term management strategies. Feedbacks between soil and aboveground communities can have a large influence on the fitness of plants and must be considered as potentially important drivers for woody encroachment. We conducted a plant–soil feedback experiment in a greenhouse between eastern redcedar Juniperus virginiana and four common North American prairie grass species. We assessed how soils that had been occupied by redcedar, a pervasive woody encroacher in the Great Plains of North America, affected the growth of Andropogon gerardi, Schizachyrium scoparium, Bromus inermis, and Pascopyrum smithii over time. We evaluated the effect of redcedar on grass performance by comparing the height and biomass of individuals that were grown in live or sterilized conspecific or redcedar soil. We found redcedar created a negative plant–soil feedback that limited the growth of the cool season grasses B. inermis and P. smithii, reducing their overall biomass by >60%. These effects were found in both live and sterilized redcedar soils. In live soils, some growth suppression can be attributed to the negative effects of soil microbes. The limitation of grass growth in sterile soils indicates redcedar may exude an allelochemical into the soil that limits grass growth. Our results demonstrate that plant–soil feedback created by redcedar inhibits the growth of certain grass species. By creating a plant–plant interaction that negatively affects competitors, redcedars increase the probability of seedling survival until they can grow to overtop their neighbors. These results indicate plant–soil feedback is a mechanism of native woody plant encroachment which could be important in many systems yet is understudied.
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Affiliation(s)
| | - David Ward
- Department of Biological SciencesKent State UniversityKentOhioUSA
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Khanna K, Kohli SK, Sharma N, Kour J, Devi K, Bhardwaj T, Dhiman S, Singh AD, Sharma N, Sharma A, Ohri P, Bhardwaj R, Ahmad P, Alam P, Albalawi TH. Phytomicrobiome communications: Novel implications for stress resistance in plants. Front Microbiol 2022; 13:912701. [PMID: 36274695 PMCID: PMC9583171 DOI: 10.3389/fmicb.2022.912701] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 07/15/2022] [Indexed: 11/13/2022] Open
Abstract
The agricultural sector is a foremost contributing factor in supplying food at the global scale. There are plethora of biotic as well as abiotic stressors that act as major constraints for the agricultural sector in terms of global food demand, quality, and security. Stresses affect rhizosphere and their communities, root growth, plant health, and productivity. They also alter numerous plant physiological and metabolic processes. Moreover, they impact transcriptomic and metabolomic changes, causing alteration in root exudates and affecting microbial communities. Since the evolution of hazardous pesticides and fertilizers, productivity has experienced elevation but at the cost of impeding soil fertility thereby causing environmental pollution. Therefore, it is crucial to develop sustainable and safe means for crop production. The emergence of various pieces of evidence depicting the alterations and abundance of microbes under stressed conditions proved to be beneficial and outstanding for maintaining plant legacy and stimulating their survival. Beneficial microbes offer a great potential for plant growth during stresses in an economical manner. Moreover, they promote plant growth with regulating phytohormones, nutrient acquisition, siderophore synthesis, and induce antioxidant system. Besides, acquired or induced systemic resistance also counteracts biotic stresses. The phytomicrobiome exploration is crucial to determine the growth-promoting traits, colonization, and protection of plants from adversities caused by stresses. Further, the intercommunications among rhizosphere through a direct/indirect manner facilitate growth and form complex network. The phytomicrobiome communications are essential for promoting sustainable agriculture where microbes act as ecological engineers for environment. In this review, we have reviewed our building knowledge about the role of microbes in plant defense and stress-mediated alterations within the phytomicrobiomes. We have depicted the defense biome concept that infers the design of phytomicrobiome communities and their fundamental knowledge about plant-microbe interactions for developing plant probiotics.
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Affiliation(s)
- Kanika Khanna
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
- Department of Microbiology, DAV University, Jalandhar, India
| | - Sukhmeen Kaur Kohli
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Nandni Sharma
- Department of Zoology, Guru Nanak Dev University, Amritsar, India
| | - Jaspreet Kour
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Kamini Devi
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Tamanna Bhardwaj
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Shalini Dhiman
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Arun Dev Singh
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Neerja Sharma
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Anket Sharma
- State Key Laboratory of Subtropical Silviculture, Zhejiang A&F University, Hangzhou, China
| | - Puja Ohri
- Department of Zoology, Guru Nanak Dev University, Amritsar, India
| | - Renu Bhardwaj
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, India
| | - Parvaiz Ahmad
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
- Department of Botany, S.P. College Srinagar, Jammu and Kashmir, India
| | - Pravej Alam
- Department of Biology, College of Science and Humanities, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
| | - Thamer H. Albalawi
- Department of Biology, College of Science and Humanities, Prince Sattam Bin Abdulaziz University, Al-Kharj, Saudi Arabia
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Su A, Xu Y, Xu M, Ding S, Li M, Zhang Y. Resilience of the wheat root-associated microbiome to the disturbance of phenanthrene. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156487. [PMID: 35667431 DOI: 10.1016/j.scitotenv.2022.156487] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 04/25/2022] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
The microbial communities are of high importance to the restoration of ecological function and plant health, while little information about the influence of exogenous pollutants on the resilience and temporal dynamics of root microbial communities is available. In this study, a greenhouse experiment was conducted to investigate the effects of exogenous phenanthrene in terms of time and pollution disturbance on the wheat root-associated microbial communities. It was found that a high phenanthrene degradation rate of 86 % was achieved in the rhizosphere of wheat after the first-week planting. Compared to phenanthrene pollution, temporal changes had more significant impacts on the wheat root microbial communities. Obvious change of microbes influenced by PHE had been revealed at the initial three-week planting even most of PHE has been degraded, and the enriched microbes in the rhizosphere were affiliated to Altererythrobacter, Massilia, Mycobacterium, Ramlibacter, Sphingobium, Novosphingobium and Romboutsia. However, at the later stage after four-week incubation, the wheat root-associated microbial communities gradually recovered to the state without pollution. The results of this study were helpful to deepen the understanding of the response of root-associated microbial resilience to the exogenous phenanthrene pollution, and would benefit the stability and balance of agricultural ecology facing exogenous organic pollutants.
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Affiliation(s)
- Aoxue Su
- College of Environmental Sciences and Engineering, Qingdao University, Qingdao 266071, China
| | - Yan Xu
- College of Environmental Sciences and Engineering, Qingdao University, Qingdao 266071, China; Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, College of Environmental Resource Sciences, Zhejiang University, 310058 Hangzhou, China.
| | - Minmin Xu
- Shandong Academy of Environmental Sciences Co., LTD., Jinan 250100, China
| | - Shuang Ding
- China National Institute of Standardization, Beijing, China
| | - Mingyue Li
- College of Environmental Sciences and Engineering, Qingdao University, Qingdao 266071, China
| | - Ying Zhang
- College of Environmental Sciences and Engineering, Qingdao University, Qingdao 266071, China
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87
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Lan T, Xie N, Chen C, He X, Deng O, Zhou W, Chen G, Ling J, Yuan S, Huang R, Tian Z, Anderson CWN, Gao X. Effects of biological nitrification inhibitor in regulating NH 3 volatilization and fertilizer nitrogen recovery efficiency in soils under rice cropping. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:155857. [PMID: 35561920 DOI: 10.1016/j.scitotenv.2022.155857] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2021] [Revised: 05/06/2022] [Accepted: 05/07/2022] [Indexed: 06/15/2023]
Abstract
Biological nitrification inhibitors are exudates from plant roots that can inhibit nitrification, and have advantages over traditional synthetic nitrification inhibitors. However, our understanding of the effects of biological nitrification inhibitors on nitrogen (N) loss and fertilizer N recovery efficiency in staple food crops is limited. In this study, acidic and calcareous soils were selected, and rice growth pot experiments were conducted to investigate the effects of the biological nitrification inhibitor, methyl 3-(4-hydroxyphenyl) propionate (MHPP) and/or a urease inhibitor (N-[n-butyl], thiophosphoric triamide [NBPT]) on NH3 volatilization, N leaching, fertilizer N recovery efficiency under a 20% reduction of the conventional N application rate. Our results show that rice yield and fertilizer N recovery efficiency were more sensitive to reduced N application in the calcareous soil than in the acidic soil. MHPP stimulated NH3 volatilization by 13.2% in acidic soil and 9.06% in calcareous soil but these results were not significant. In the calcareous soil, fertilizer N recovery efficiency significantly increased by 19.3% and 44.4% in the MHPP and NBPT+MHPP groups, respectively, relative to the reduced N treatment, and the rice yield increased by 16.7% in the NBPT+MHPP treatment (P < 0.05). However, such effects were not significant in the acidic soil. MHPP exerted a significant effect on soil ammonia oxidizers, and the response of abundance and community structure of ammonia-oxidizing archaea, ammonia-oxidizing bacteria, and total bacteria to MHPP depended on the soil type. MHPP+NBPT reduced NH3 volatilization, N leaching, and maintaining rice yield for a 20% reduction in conventional N fertilizer application rate. This could represent a viable strategy for more sustainable rice production, despite the inevitable increase in cost for famers.
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Affiliation(s)
- Ting Lan
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China.
| | - Nan Xie
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Cheng Chen
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Xiaoqian He
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Ouping Deng
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Wei Zhou
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Guangdeng Chen
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Jing Ling
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Shu Yuan
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Rong Huang
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Zhaonan Tian
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
| | - Christopher W N Anderson
- School of Agriculture and Environment, Massey University, Palmerston North, Private Bag 11-222, New Zealand
| | - Xuesong Gao
- College of Resources, Sichuan Agricultural University, Chengdu, Sichuan 611130, China
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88
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Wen T, Yu GH, Hong WD, Yuan J, Niu GQ, Xie PH, Sun FS, Guo LD, Kuzyakov Y, Shen QR. Root exudate chemistry affects soil carbon mobilization via microbial community reassembly. FUNDAMENTAL RESEARCH 2022; 2:697-707. [PMID: 38933120 PMCID: PMC11197519 DOI: 10.1016/j.fmre.2021.12.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 12/01/2021] [Accepted: 12/06/2021] [Indexed: 11/20/2022] Open
Abstract
Plant roots are one of the major mediators that allocate carbon captured from the atmosphere to soils as rhizodeposits, including root exudates. Although rhizodeposition regulates both microbial activity and the biogeochemical cycling of nutrients, the effects of particular exudate species on soil carbon fluxes and key rhizosphere microorganisms remain unclear. By combining high-throughput sequencing, q-PCR, and NanoSIMS analyses, we characterized the bacterial community structure, quantified total bacteria depending on root exudate chemistry, and analyzed the consequences on the mobility of mineral-protected carbon. Using well-controlled incubation experiments, we showed that the three most abundant groups of root exudates (amino acids, carboxylic acids, and sugars) have contrasting effects on the release of dissolved organic carbon (DOC) and bioavailable Fe in an Ultisol through the disruption of organo-mineral associations and the alteration of bacterial communities, thus priming organic matter decomposition in the rhizosphere. High resolution (down to 50 nm) NanoSIMS images of mineral particles indicated that iron and silicon co-localized significantly more organic carbon following amino acid inputs than treatments without exudates or with carboxylic acids. The application of sugar strongly reduced microbial diversity without impacting soil carbon mobilization. Carboxylic acids increased the prevalence of Actinobacteria and facilitated carbon mobilization, whereas amino acid addition increased the abundances of Proteobacteria that prevented DOC release. In summary, root exudate functions are defined by their chemical composition that regulates bacterial community composition and, consequently, the biogeochemical cycling of carbon in the rhizosphere.
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Affiliation(s)
- Tao Wen
- The Key Laboratory of Plant Immunity, Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, China
| | - Guang-Hui Yu
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University Tianjin Bohai Rim Coastal Earth Critical Zone National Observation and Research Station, Tianjin 300072, China
| | - Wen-Dan Hong
- The Key Laboratory of Plant Immunity, Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, China
| | - Jun Yuan
- The Key Laboratory of Plant Immunity, Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, China
| | - Guo-Qing Niu
- The Key Laboratory of Plant Immunity, Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, China
| | - Peng-Hao Xie
- The Key Laboratory of Plant Immunity, Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, China
| | - Fu-Sheng Sun
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University Tianjin Bohai Rim Coastal Earth Critical Zone National Observation and Research Station, Tianjin 300072, China
| | - Lao-Dong Guo
- School of Freshwater Sciences, University of Wisconsin-Milwaukee, 600 E Greenfield Ave., Milwaukee, WI 53204, United States
| | - Yakov Kuzyakov
- Department of Soil Science of Temperate Ecosystems, Department of Agricultural Soil Science, University of Göttingen, Göttingen 37073, Germany
- Agro-Technological Institute, Peoples Friendship University of Russia (RUDN University), Moscow 117198, Russia
| | - Qi-Rong Shen
- The Key Laboratory of Plant Immunity, Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing 210095, China
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89
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Xiao L, Wang G, Wang M, Zhang S, Sierra CA, Guo X, Chang J, Shi Z, Luo Z. Younger carbon dominates global soil carbon efflux. GLOBAL CHANGE BIOLOGY 2022; 28:5587-5599. [PMID: 35748530 DOI: 10.1111/gcb.16311] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 06/15/2022] [Indexed: 06/15/2023]
Abstract
Soil carbon (C) is comprised of a continuum of organic compounds with distinct ages (i.e., the time a C atom has experienced in soil since the C atom entered soil). The contribution of different age groups to soil C efflux is critical for understanding soil C stability and persistence, but is poorly understood due to the complexity of soil C pool age structure and potential distinct turnover behaviors of age groups. Here, we build upon the quantification of soil C transit times to infer the age of C atoms in soil C efflux (aefflux ) from seven sequential soil layer depths down to 2 m at a global scale, and compare this age with radiocarbon-inferred ages of C retained in corresponding soil layers (asoil ). In the whole 0-2 m soil profile, the mean aefflux is 194 21 1021 (mean with 5%-95% quantiles) year and is just about one-eighth of asoil ( 1476 717 2547 year), demonstrating that younger C dominates soil C efflux. With increasing soil depth, both aefflux and asoil are increased, but their disparities are markedly narrowed. That is, the proportional contribution of relatively younger soil C to efflux is decreased in deeper layers, demonstrating that C inputs (new and young) stay longer in deeper layers. Across the globe, we find large spatial variability of the contribution of soil C age groups to C efflux. Especially, in deep soil layers of cold regions (e.g., boreal forests and tundra), aefflux may be older than asoil , suggesting that older C dominates C efflux only under a limited range of conditions. These results imply that most C inputs may not contribute to long-term soil C storage, particularly in upper layers that hold the majority of new C inputs.
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Affiliation(s)
- Liujun Xiao
- Provincial Key Laboratory of Agricultural Remote Sensing and Information Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Guocheng Wang
- State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing, China
| | - Mingming Wang
- Provincial Key Laboratory of Agricultural Remote Sensing and Information Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Shuai Zhang
- Provincial Key Laboratory of Agricultural Remote Sensing and Information Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Carlos A Sierra
- Max Planck Institute for Biogeochemistry, Jena, Germany
- Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Xiaowei Guo
- Provincial Key Laboratory of Agricultural Remote Sensing and Information Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
| | - Jinfeng Chang
- Provincial Key Laboratory of Agricultural Remote Sensing and Information Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
- Academy of Ecological Civilization, Zhejiang University, Hangzhou, China
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, Zhejiang University, Hangzhou, China
| | - Zhou Shi
- Provincial Key Laboratory of Agricultural Remote Sensing and Information Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
- Academy of Ecological Civilization, Zhejiang University, Hangzhou, China
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, Zhejiang University, Hangzhou, China
| | - Zhongkui Luo
- Provincial Key Laboratory of Agricultural Remote Sensing and Information Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China
- Academy of Ecological Civilization, Zhejiang University, Hangzhou, China
- Key Laboratory of Environment Remediation and Ecological Health, Ministry of Education, Zhejiang University, Hangzhou, China
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90
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Liu C, Li B, Chen X, Dong Y, Lin H. Insight into soilless revegetation of oligotrophic and heavy metal contaminated gold tailing pond by metagenomic analysis. JOURNAL OF HAZARDOUS MATERIALS 2022; 435:128881. [PMID: 35489315 DOI: 10.1016/j.jhazmat.2022.128881] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2022] [Revised: 04/04/2022] [Accepted: 04/05/2022] [Indexed: 06/14/2023]
Abstract
Soilless revegetation is an efficient way for gold tailing remediation, and micro-ecological environments in plant rhizosphere are important for vegetation establishment and pollution removal. In the present study, a field experiment of soilless revegetation has been carried out in a gold tailings pond, and the key genera and functional genes in the plant rhizosphere of gold mine tailings were revealed by metagenomics analysis. Soilless revegetation significantly decreased rhizosphere tailing pH from 8.54 to 7.43-7.87, reduced heavy metal (HM) concentration by 29.81-44.02% and enhanced the nutrient content by 50.30-169.50% averagely. Such improvements were strongly and closely correlated to microbial community and functional gene composition variation. The relative abundance of ecologically beneficial genus such as Actinobacteria (increased 9.7-18.8%) and functional genes involved in carbon, nitrogen and phosphorus cycling such as pyruvate metabolism (relatively increased 8.7-15.0%), assimilatory (increased to 1.44-2.08 times), phosphate ester mineralization (increased to 1.12-1.29 times) and phosphate transportation (increased to 1.28-1.85 times) were significantly increased. Moreover, the relative abundance of most As and Zn resistance genes were reduced, which may relate to the decrease of As and Zn concentration in the rhizosphere tailings. These results revealed the correlation among HM concentrations, microbial composition and functional genes, and provided clear strategies for improving gold mine tailing ecological restoration efficiency.
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Affiliation(s)
- Chenjing Liu
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China; Beijing Key Laboratory on Resource-Oriented Treatment of Industrial Pollutants, Beijing 100083, China
| | - Bing Li
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China; Beijing Key Laboratory on Resource-Oriented Treatment of Industrial Pollutants, Beijing 100083, China.
| | - Xu Chen
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China
| | - Yingbo Dong
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China; Beijing Key Laboratory on Resource-Oriented Treatment of Industrial Pollutants, Beijing 100083, China
| | - Hai Lin
- School of Energy and Environmental Engineering, University of Science and Technology Beijing, Beijing 100083, China; Beijing Key Laboratory on Resource-Oriented Treatment of Industrial Pollutants, Beijing 100083, China.
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91
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Bartoli C, Boivin S, Marta M, Gris C, Gasciolli V, Gaston M, Auriac MC, Debellé F, Cottret L, Carlier A, Masson-Boivin C, Lepetit M, Lefebvre B. Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes that can stimulate root development. Environ Microbiol 2022; 24:5509-5523. [PMID: 35920038 DOI: 10.1111/1462-2920.16148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 07/21/2022] [Accepted: 07/22/2022] [Indexed: 11/26/2022]
Abstract
Although rhizobia that establish a nitrogen-fixing symbiosis with legumes are also known to promote growth in non-legumes, studies on rhizobial associations with wheat roots are scarce. We searched for Rhizobium leguminosarum symbiovar viciae (Rlv) strains naturally competent to endophytically colonize wheat roots. We isolated 20 strains from surface-sterilized wheat roots, and found a low diversity of Rlv compared to that observed in the Rlv species complex. We tested the ability of a subset of these Rlv for wheat root colonization when co-inoculated with other Rlv. Only a few strains, including those isolated from wheat roots, and one strain isolated from pea nodules, were efficient in colonizing roots in co-inoculation conditions, while all the strains tested in single strain inoculation conditions were found to colonize the surface and interior of roots. Furthermore, Rlv strains isolated from wheat roots were able to stimulate root development and early arbuscular mycorrhizal fungi colonization. These responses were strain and host genotype dependent. Our results suggest that wheat can be an alternative host for Rlv; nevertheless, there is a strong competition between Rlv strains for wheat root colonization. In addition, we showed that Rlv are endophytic wheat root bacteria with potential ability to modify wheat development.
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Affiliation(s)
- Claudia Bartoli
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France.,LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
| | - Stéphane Boivin
- Laboratoire des Symbioses Tropicales et Méditerranéennes INRAE, IRD, CIRAD, University of Montpellier, Montpellier SupAgro Montpellier, France
| | - Marchetti Marta
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
| | - Carine Gris
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
| | | | - Mégane Gaston
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
| | - Marie-Christine Auriac
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France.,FRAIB-TRI Imaging Platform Facilities, Université de Toulouse, CNRS, 24 chemin de Borderouge, Castanet-Tolosan, France
| | - Frédéric Debellé
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
| | - Ludovic Cottret
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
| | - Aurélien Carlier
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
| | | | - Marc Lepetit
- Laboratoire des Symbioses Tropicales et Méditerranéennes INRAE, IRD, CIRAD, University of Montpellier, Montpellier SupAgro Montpellier, France.,Institut Sophia Agrobiotech INRAE, CNRS, University Côte d'azur, Sophia Antipolis, France
| | - Benoit Lefebvre
- LIPME, Université de Toulouse, INRAE, CNRS, Castanet-Tolosan, France
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92
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Galbraith P, Henry R, McCarthy DT. Plants against pathogens: Effect of significant antimicrobial-producing plants on faecal microbe inactivation throughout the soil profile of stormwater biofilters. WATER RESEARCH 2022; 221:118707. [PMID: 35717708 DOI: 10.1016/j.watres.2022.118707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 04/20/2022] [Accepted: 05/31/2022] [Indexed: 06/15/2023]
Abstract
Stormwater biofilters have demonstrated promising yet variable removal of faecal microorganisms. Significant antimicrobial-producing plants have been proposed as an inexpensive, safe and easily adaptable component of biofilter design to enhance faecal pathogen treatment. The aim of the present study was to investigate whether significant antimicrobial-producing plants improved faecal bacterial inactivation throughout the biofilter soil profile, focusing on four key treatment zones. These were specifically the top sediment/surface layer; the rhizosphere (soil directly attached to and influenced by plant roots); bulk soil (soil not directly associated with roots); and the submerged/saturated zone. Biofilters were configured with either: (1) no plant; (2) Carex appressa, the most highly recommended plant species in Australian biofilter adoption guidelines; or (3) one of two significant antimicrobial-producing Australian plant species, Melaleuca linariifolia or Melaleuca fulgens (n = 3 each). Following 16 months' maturation, systems were dosed with semi-synthetic stormwater containing faecal bacteria Escherichia coli and Enterococcus faecalis to monitor their ensuing die-off within all major biofilter treatment zones. Bacterial inactivation was generally more rapid in M. fulgens and M. linariifolia than C. appressa biofilters, with E. faecalis demonstrating an overall enhanced resistance to inactivation. Top sediment tended to exhibit the highest inactivation rates, significantly correlated with sunlight exposure. Conversely, the rhizosphere supported comparatively prolonged faecal bacterial survival. The authors recommend further investigation of melaleucas and similar highly antimicrobial-producing plants for enhanced faecal pathogen treatment within biofilters and related treatment contexts.
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Affiliation(s)
- P Galbraith
- Environmental and Public Health Microbiology Laboratory (EPHM Lab), Monash Water for Liveability, Department of Civil Engineering, Monash University, Wellington Road, Clayton, Victoria 3800, Australia
| | - R Henry
- Environmental and Public Health Microbiology Laboratory (EPHM Lab), Monash Water for Liveability, Department of Civil Engineering, Monash University, Wellington Road, Clayton, Victoria 3800, Australia
| | - D T McCarthy
- Environmental and Public Health Microbiology Laboratory (EPHM Lab), Monash Water for Liveability, Department of Civil Engineering, Monash University, Wellington Road, Clayton, Victoria 3800, Australia.
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93
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Liu Q, Zhang L, Wang L, Wu Q, Li K, Guo X. Autotoxin affects the rhizosphere microbial community structure by influencing the secretory characteristics of grapevine roots. Front Microbiol 2022; 13:953424. [PMID: 35958141 PMCID: PMC9360756 DOI: 10.3389/fmicb.2022.953424] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2022] [Accepted: 07/07/2022] [Indexed: 11/16/2022] Open
Abstract
Autotoxins secreted by roots into the soil can trigger rhizosphere microecological imbalances and affect root secretory properties resulting in conditions such as replanting disease. However, information on the effect of autotoxins on root secretion characteristics and regulation of the composition of rhizosphere microorganisms by altered root exudates is limited. In this study, autotoxin ρ-hydroxybenzoic acid (4-HBA) was added to the soil of potted grapevine seedlings, CO2 pulse-labeling, and DNA stable isotope probing were used to track the rhizosphere microbiome that assimilates root exudates. Bacterial and fungal microbiomes that assimilated plant-derived carbon were identified by high-throughput sequencing. Results showed that 4-HBA treatment altered bacterial and fungal communities in 13C-labeled organisms, with a lower abundance of beneficial bacteria (e.g., Gemmatimonas, Streptomyces, and Bacillus) and a higher abundance of potential pathogen fungi (e.g., Fusarium, Neocosmospora, Gibberella, and Fusicolla) by changing the composition of root exudates. The exogenous addition of upregulated compound mixtures of root exudates reduced the abundance of beneficial bacterial Bacillus and increased the abundance of potential pathogen fungi Gibberella. These results suggest that 4-HBA can alter root secretion properties and altered root exudates may enrich certain potential pathogens and reduce certain beneficial bacteria, thereby unbalancing the structure of the rhizosphere microbial community.
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Affiliation(s)
- Qianwen Liu
- Department of Pomology, College of Horticulture, Shenyang Agricultural University, Shenyang, China
| | - Liheng Zhang
- Department of Pomology, College of Horticulture, Shenyang Agricultural University, Shenyang, China
- Dalian Academy of Agricultural Sciences, Dalian, China
| | - Lu Wang
- Department of Pomology, College of Horticulture, Shenyang Agricultural University, Shenyang, China
| | - Qingchun Wu
- Department of Pomology, College of Horticulture, Shenyang Agricultural University, Shenyang, China
| | - Kun Li
- Department of Pomology, College of Horticulture, Shenyang Agricultural University, Shenyang, China
- *Correspondence: Kun Li,
| | - Xiuwu Guo
- Department of Pomology, College of Horticulture, Shenyang Agricultural University, Shenyang, China
- Xiuwu Guo,
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94
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Yang C, Han N, Inoue C, Yang YL, Nojiri H, Ho YN, Chien MF. Rhizospheric plant-microbe synergistic interactions achieve efficient arsenic phytoextraction by Pteris vittata. JOURNAL OF HAZARDOUS MATERIALS 2022; 434:128870. [PMID: 35452977 DOI: 10.1016/j.jhazmat.2022.128870] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 03/22/2022] [Accepted: 04/03/2022] [Indexed: 06/14/2023]
Abstract
Phytoextraction is a cost-effective and eco-friendly technology to remove arsenic (As) from contaminated soil using plants and associated microorganisms. Pteris vittata is the most studied As hyperaccumulator, which effectively takes up inorganic arsenate via roots. Arsenic solubilization and speciation occur prior to plant absorption in the rhizosphere, which play a key role in As phytoextraction by P. vittata. This study investigated the metabolomic correlation of P. vittata and associated rhizospheric microorganisms during As phytoextraction. Three-month pot cultivation of P. vittata in As polluted soil was conducted. In rhizosphere, an increase of water-soluble As concentration and a decrease of pH was observed in the second month, suggesting acidic metabolites as a possible cause of As solubilization. A correlation network was built to elucidate the interactions among metabolites, bacteria and fungi in the rhizosphere of P. vittata. Our results demonstrate that the plant is the major driving force of rhizospheric microbiota generation, and both microbial community and metabolites in rhizosphere of P. vittata correlate to increased bioavailable As. Multi-omics analysis revealed that pterosins enrich microbes that potentially promote As phytoextraction. This study extends the current view of rhizospheric plant-microbes synergistic effects of hyperaccumulators on phytoextraction, which provides clues for developing efficient As phytoremediation approaches.
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Affiliation(s)
- Chongyang Yang
- Graduate School of Environment Studies (GSES), Tohoku University, Sendai 980-8579, Japan; Agro-Biotechnology Research Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Ning Han
- Graduate School of Environment Studies (GSES), Tohoku University, Sendai 980-8579, Japan
| | - Chihiro Inoue
- Graduate School of Environment Studies (GSES), Tohoku University, Sendai 980-8579, Japan
| | - Yu-Liang Yang
- Agriculture Biotechnology Research Center, Academia Sinica, Taipei 11529, Taiwan
| | - Hideaki Nojiri
- Agro-Biotechnology Research Center, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan
| | - Ying-Ning Ho
- Institute of Marine Biology and Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung 20224, Taiwan.
| | - Mei-Fang Chien
- Graduate School of Environment Studies (GSES), Tohoku University, Sendai 980-8579, Japan.
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95
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Awad AAM, Ahmed AI, Elazem AHA, Sweed AAA. Mitigation of CaCO3 Influence on Ipomoea batatas Plants Using Bacillus megaterium DSM 2894. AGRONOMY 2022; 12:1571. [DOI: 10.3390/agronomy12071571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
Abstract
The application of PGPB is considered a surrogate approach to reducing the amounts of phosphorus fertilizers applied in addition to its role in improving nutrient availability under stress conditions. The objective of this study was to evaluate five levels of calcium superphosphate (CSP); ultimately, CSP was applied in five levels: CSP20, CSP40, CSP60, CSP80, and CSP100 were applied at 69, 138, 207, 276, and 345 kg ha−1, respectively, and two treatments of Bacillus megaterium DSM 2894 (with and without) were applied on sweet potato (Beauregard cv.) plants grown in calcareous soils in the 2019 and 2020 seasons in Egypt. Some macro- and micronutrient (i.e., nitrogen (N), phosphorus (P), calcium (Ca), iron (Fe), manganese (Mn), zinc (Zn), and copper (Cu)) uptake, antiradical power (ARP), and protein and total root yields (TRYs) were determined. The plants inoculated with B. megaterium DSM 2894 had increased leaf N, P, and Mn contents in both seasons; in addition, Ca was increased in the second season. Furthermore, all of the root nutrient contents (except N) as well as the ARP and TRY were increased in both seasons as compared with those of the noninoculated plants. On the other hand, the maximum values of the leaf Ca, Fe, and Cu contents and the root Ca, Fe, and Zn contents were recorded with the CSP20 treatment in both seasons. CSP60 was the superior treatment for N (in the leaves), Mn (in the roots), ARP, protein contents, and TRY in both seasons and for the leaf Zn content in the 2019 season. The application of the CSP100 treatment gave the highest values for the leaf and root P contents and the root Cu contents in both seasons as well as for the leaf Mn content in the first season and the root N content in the 2020 growth season. Thus, it was concluded that the application of CSP20, CSP60, and CSP100 treatments with the B. megaterium DSM2894 mixture gave the best values compared to the use of CSP or DSM2894 individually to attenuate CaCO3-induced damage.
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96
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de la Fuente Cantó C, Diouf MN, Ndour PMS, Debieu M, Grondin A, Passot S, Champion A, Barrachina C, Pratlong M, Gantet P, Assigbetsé K, Kane N, Cubry P, Diedhiou AG, Heulin T, Achouak W, Vigouroux Y, Cournac L, Laplaze L. Genetic control of rhizosheath formation in pearl millet. Sci Rep 2022; 12:9205. [PMID: 35655088 PMCID: PMC9163325 DOI: 10.1038/s41598-022-13234-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 05/13/2022] [Indexed: 11/09/2022] Open
Abstract
The rhizosheath, the layer of soil that adheres strongly to roots, influences water and nutrients acquisition. Pearl millet is a cereal crop that plays a major role for food security in arid regions of sub-Saharan Africa and India. We previously showed that root-adhering soil mass is a heritable trait in pearl millet and that it correlates with changes in rhizosphere microbiota structure and functions. Here, we studied the correlation between root-adhering soil mass and root hair development, root architecture, and symbiosis with arbuscular mycorrhizal fungi and we analysed the genetic control of this trait using genome wide association (GWAS) combined with bulk segregant analysis and gene expression studies. Root-adhering soil mass was weakly correlated only to root hairs traits in pearl millet. Twelve QTLs for rhizosheath formation were identified by GWAS. Bulk segregant analysis on a biparental population validated five of these QTLs. Combining genetics with a comparison of global gene expression in the root tip of contrasted inbred lines revealed candidate genes that might control rhizosheath formation in pearl millet. Our study indicates that rhizosheath formation is under complex genetic control in pearl millet and suggests that it is mainly regulated by root exudation.
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Affiliation(s)
| | - M N Diouf
- Eco&Sols, Université de Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France.,Laboratoire Mixte International Intensification Écologique Des Sols Cultivés en Afrique de L'Ouest (IESOL), Dakar, Senegal.,Département de Biologie Végétale, Faculté Des Sciences Et Techniques, Université Cheikh Anta Diop, Dakar, Sénégal
| | - P M S Ndour
- Eco&Sols, Université de Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France.,Laboratoire Mixte International Intensification Écologique Des Sols Cultivés en Afrique de L'Ouest (IESOL), Dakar, Senegal
| | - M Debieu
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - A Grondin
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France.,Laboratoire Mixte International Adaptation Des Plantes Et Microorganismes Associés Aux Stress Environnementaux (LAPSE), Centre de recherche de Bel-Air, Dakar, Senegal.,CERAAS, Thiès, Senegal
| | - S Passot
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - A Champion
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | | | - M Pratlong
- Montpellier GenomiX, Montpellier, France
| | - P Gantet
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - K Assigbetsé
- Eco&Sols, Université de Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France.,Laboratoire Mixte International Intensification Écologique Des Sols Cultivés en Afrique de L'Ouest (IESOL), Dakar, Senegal
| | - N Kane
- Laboratoire Mixte International Adaptation Des Plantes Et Microorganismes Associés Aux Stress Environnementaux (LAPSE), Centre de recherche de Bel-Air, Dakar, Senegal
| | - P Cubry
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - A G Diedhiou
- Laboratoire Mixte International Adaptation Des Plantes Et Microorganismes Associés Aux Stress Environnementaux (LAPSE), Centre de recherche de Bel-Air, Dakar, Senegal.,Département de Biologie Végétale, Faculté Des Sciences Et Techniques, Université Cheikh Anta Diop, Dakar, Sénégal
| | - T Heulin
- Aix Marseille Univ, CEA, CNRS, BIAM, LEMiRE, Laboratory of Microbial Ecology of the Rhizosphere, ECCOREV FR 3098, 13108, Saint Paul-Lez-Durance, France
| | - W Achouak
- Aix Marseille Univ, CEA, CNRS, BIAM, LEMiRE, Laboratory of Microbial Ecology of the Rhizosphere, ECCOREV FR 3098, 13108, Saint Paul-Lez-Durance, France
| | - Y Vigouroux
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France
| | - L Cournac
- Eco&Sols, Université de Montpellier, IRD, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - L Laplaze
- DIADE, Université de Montpellier, IRD, CIRAD, Montpellier, France. .,Laboratoire Mixte International Adaptation Des Plantes Et Microorganismes Associés Aux Stress Environnementaux (LAPSE), Centre de recherche de Bel-Air, Dakar, Senegal.
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97
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González-Moscoso M, Juárez-Maldonado A, Cadenas-Pliego G, Meza-Figueroa D, SenGupta B, Martínez-Villegas N. Silicon nanoparticles decrease arsenic translocation and mitigate phytotoxicity in tomato plants. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:34147-34163. [PMID: 35034295 DOI: 10.1007/s11356-021-17665-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 11/17/2021] [Indexed: 06/14/2023]
Abstract
In this study, we simulate the irrigation of tomato plants with arsenic (As)-contaminated water (from 0 to 3.2 mg L-1) and investigate the effect of the application of silicon nanoparticle (Si NPs) in the form of silicon dioxide (0, 250, and 1000 mg L-1) on As uptake and stress. Arsenic concentrations were determined in substrate and plant tissue at three different stratums. Phytotoxicity, As accumulation and translocation, photosynthetic pigments, and antioxidant activity of enzymatic and non-enzymatic compounds were also determined. Our results show that irrigation of tomato plants with As-contaminated water caused As substrate enrichment and As bioaccumulation (roots > leaves > steam), showing that the higher the concentration in irrigation water, the farther As translocated through the different tomato stratums. Additionally, phytotoxicity was observed at low concentrations of As, while tomato yield increased at high concentrations of As. We found that application of Si NPs decreased As translocation, tomato yield, and root biomass. Increased production of photosynthetic pigments and improved enzymatic activity (CAT and APX) suggested tomato plant adaptation at high As concentrations in the presence of Si NPs. Our results reveal likely impacts of As and nanoparticles on tomato production in places where As in groundwater is common and might represent a risk.
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Affiliation(s)
- Magín González-Moscoso
- Doctorado en Agricultura Protegida, Universidad Autónoma Agraria Antonio Narro, Calzada Antonio Narro 1923, Buenavista, 25315, Saltillo, Coahuila, México
| | - Antonio Juárez-Maldonado
- Departamento de Botánica, Universidad Autónoma Agraria Antonio Narro, Calzada Antonio Narro 1923, 25315, Saltillo, Coahuila, México
| | - Gregorio Cadenas-Pliego
- Centro de Investigación en Química Aplicada, Enrique Reyna H 140, 25294, Saltillo, Coahuila, México
| | - Diana Meza-Figueroa
- Departamento de Geología, Universidad de Sonora, Blvd. Luis Encinas J, Calle Av. Rosales &, Centro, 83000, Hermosillo, Sonora, México
| | - Bhaskar SenGupta
- School of Energy, Geoscience, Infrastructure & Society, Water Academy, Heriot-Watt University, EGIS 2.02A William Arrol Building, Scotland, EH14 4AS, UK
| | - Nadia Martínez-Villegas
- IPICyT, Instituto Potosino de Investigación Científica Y Tecnológica, Camino a La Presa San José No. 2055, Col. Lomas 4a Sec., 78216, San Luis Potosí, SLP, México.
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98
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Mo X, Liu G, Zhang Z, Lu X, Liang C, Tian J. Mechanisms Underlying Soybean Response to Phosphorus Deficiency through Integration of Omics Analysis. Int J Mol Sci 2022; 23:4592. [PMID: 35562981 PMCID: PMC9105353 DOI: 10.3390/ijms23094592] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Revised: 04/14/2022] [Accepted: 04/18/2022] [Indexed: 12/17/2022] Open
Abstract
Low phosphorus (P) availability limits soybean growth and yield. A set of potential strategies for plant responses to P deficiency have been elucidated in the past decades, especially in model plants such as Arabidopsis thaliana and rice (Oryza sativa). Recently, substantial efforts focus on the mechanisms underlying P deficiency improvement in legume crops, especially in soybeans (Glycine max). This review summarizes recent advances in the morphological, metabolic, and molecular responses of soybean to phosphate (Pi) starvation through the combined analysis of transcriptomics, proteomics, and metabolomics. Furthermore, we highlight the functions of the key factors controlling root growth and P homeostasis, base on which, a P signaling network in soybean was subsequently presumed. This review also discusses current barriers and depicts perspectives in engineering soybean cultivars with high P efficiency.
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Affiliation(s)
| | | | | | | | - Cuiyue Liang
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; (X.M.); (G.L.); (Z.Z.); (X.L.)
| | - Jiang Tian
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; (X.M.); (G.L.); (Z.Z.); (X.L.)
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99
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Nyer SC, Volkenborn N, Aller RC, Graffam M, Zhu Q, Price RE. Nitrogen transformations in constructed wetlands: A closer look at plant-soil interactions using chemical imaging. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 816:151560. [PMID: 34785218 DOI: 10.1016/j.scitotenv.2021.151560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 10/24/2021] [Accepted: 11/05/2021] [Indexed: 06/13/2023]
Abstract
Constructed wetlands have long been used for domestic wastewater treatment. Despite the widespread application of constructed wetlands for wastewater remediation, they are still regarded as a black box in terms of the complex biogeochemical processes occurring internally, particularly with respect to plant-soil (and nitrogen) interactions. Additionally, many critical processes pertaining to nitrogen transformations in constructed wetlands are thought to occur in microzones within the rhizosphere, highlighting the need for studies with sub-cm spatial resolution. In this study we coupled nitrogen porewater measurements with chemical imaging to determine spatio-temporal patterns in porewater O2 and pH to assess the extent of plant-induced changes in soil redox dynamics that influence nitrogen biogeochemical cycling during dosed application of nitrogen-rich artificial wastewater. Planar optode imaging revealed extensive O2 fluxes to otherwise anoxic sediment via radial oxygen loss (ROL) from Typha latifolia roots. The contribution of photosynthetic O2 from this plant species was minimal as a strong oxic signal persisted in darkness (diel cycles). NH4+ and NOx- removal were strongly correlated with the extent of oxic and anoxic areas, a function largely attributed to the presence of plants and the associated enhanced microbial communities supported. The distribution of nitrogen species within the Typha rhizosphere exhibited reproducible trends as a function of distance from roots, with concentrations highest close to roots (1-5 mm from root surface) and subsequently decreasing at greater distances. Microscale spatio-temporal redox heterogeneity within the rhizosphere due to ROL imposed by plants promoted nitrogen removal likely by stimulating the coupling between nitrification and denitrification in these systems. Collectively, this study highlights the profound importance of plants in exerting controls on soil conditions and nitrogen cycling in constructed wetland systems. With careful considerations, constructed wetlands designed to promote wetland plants' functions may enhance nitrogen removal and mitigate nitrogen pollution.
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Affiliation(s)
- Samantha C Nyer
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA.
| | - Nils Volkenborn
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Robert C Aller
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA
| | - Molly Graffam
- Cornell Cooperative Extension of Suffolk County, Riverhead, NY 11901, USA
| | - Qingzhi Zhu
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Roy E Price
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA
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100
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Hawkins JH, Zeglin LH. Microbial Dispersal, Including Bison Dung Vectored Dispersal, Increases Soil Microbial Diversity in a Grassland Ecosystem. Front Microbiol 2022; 13:825193. [PMID: 35432281 PMCID: PMC9009311 DOI: 10.3389/fmicb.2022.825193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 02/18/2022] [Indexed: 11/13/2022] Open
Abstract
Microbial communities display biogeographical patterns that are driven by local environmental conditions and dispersal limitation, but the relative importance of underlying dispersal mechanisms and their consequences on community structure are not well described. High dispersal rates can cause soil microbial communities to become more homogenous across space and therefore it is important to identify factors that promote dispersal. This study experimentally manipulated microbial dispersal within different land management treatments at a native tallgrass prairie site, by changing the relative openness of soil to dispersal and by simulating vector dispersal via bison dung addition. We deployed experimental soil bags with mesh open or closed to dispersal, and placed bison dung over a subset of these bags, to areas with three different land managements: active bison grazing and annual fire, annual fire but no bison grazing, and no bison grazing with infrequent fire. We expected microbial dispersal to be highest in grazed and burned environments, and that the addition of dung would consistently increase overall microbial richness and lead to homogenization of communities over time. Results show that dispersal rates, as the accumulation of taxa over the course of the 3-month experiment, increase taxonomic richness similarly in all land management treatments. Additionally, bison dung seems to be serving as a dispersal and homogenization vector, based on the consistently higher taxon richness and increased community similarity across contrasting grazing and fire treatments when dung is added. This finding also points to microbial dispersal as an important function that herbivores perform in grassland ecosystems, and in turn, as a function that was lost at a continental scale following bison extermination across the Great Plains of North America in the nineteenth century. This study is the first to detect that dispersal and vector dispersal by grazing mammals promote grassland soil microbial diversity and affect microbial community composition.
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Affiliation(s)
| | - Lydia H. Zeglin
- Division of Biology, Kansas State University, Manhattan, KS, United States
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