Soil C and N availability determine the priming effect: microbial N mining and stoichiometric decomposition theories

Accelerated organic matter decomposition in thermokarst lakes upon carbon and phosphorus inputs

Mineralization of dissolved organic matter (DOM) in thermokarst lakes plays a non-negligible role in the permafrost carbon (C) cycle, but remains poorly understood due to its complex interactions with external C and nutrient inputs (i.e., aquatic priming and nutrient effects). Based on large-scale lake sampling and laboratory incubations, in combination with 13 C-stable-isotope labeling, optical spectroscopy, and high-throughput sequencing, we examined large-scale patterns and dominant drivers of priming and nutrient effects of DOM biodegradation across 30 thermokarst lakes along a 1100-km transect on the Tibetan Plateau. We observed that labile C and phosphorus (P) rather than nitrogen (N) inputs stimulated DOM biodegradation, with the priming and P effects being 172% and 451% over unamended control, respectively. We also detected significant interactive effects of labile C and nutrient supply on DOM biodegradation, with the combined labile C and nutrient additions inducing stronger microbial mineralization than C or nutrient treatment alone, illustrating that microbial activity in alpine thermokarst lakes is co-limited by both C and nutrients. We further found that the aquatic priming was mainly driven by DOM quality, with the priming intensity increasing with DOM recalcitrance, reflecting the limitation of external C as energy sources for microbial activity. Greater priming intensity was also associated with higher community-level ribosomal RNA gene operon (rrn) copy number and bacterial diversity as well as increased background soluble reactive P concentration. In contrast, the P effect decreased with DOM recalcitrance as well as with background soluble reactive P and ammonium concentrations, revealing the declining importance of P availability in mediating DOM biodegradation with enhanced C limitation but reduced nutrient limitation. Overall, the stimulation of external C and P inputs on DOM biodegradation in thermokarst lakes would amplify C-climate feedback in this alpine permafrost region.

Nitrogen addition stimulated soil respiration more so than carbon addition in alpine meadows

The soil carbon (C) and nitrogen (N) availability are important in the regulation of soil C cycling under climate change. Fertilizers alter soil C and N availability, which can affect C balance. However, the impact of fertilizers on C balance in grassland restoration has been equivocal and warrants more research. We determined the direct and indirect effects of the addition of three levels of C (sucrose) (0, 60, and 120 kg C ha-1 yr-1), three levels of N (urea) (0, 50, and 100 kg N ha-1 yr-1), and a combination of C plus N at each of the levels on soil respiration (Rs) dynamics and C balance in an alpine meadow in northern Tibet (4700 m above sea level). This study was undertaken during the middle of the growing season in 2011-2012. The addition of C and/or N stimulated CO2 emission, which was 2-fold greater in 2011 (102-144 g C m-2) than in 2012 (43-54 g C m-2). The rate of Rs increased with the addition of N, but was not affected with the addition of C plus N. Microbial biomass C, dissolved organic C and inorganic N were the main drivers of Rs. We concluded that N addition stimulated Rs to a greater extent than C addition in the short term. The application of fertilizer in the restoration of degraded grassland should be re-considered.

Carbon Sequestration Strategies in Soil Using Biochar: Advances, Challenges, and Opportunities

Biochar, a carbon (C)-rich material obtained from the thermochemical conversion of biomass under oxygen-limited environments, has been proposed as one of the most promising materials for C sequestration and climate mitigation in soil. The C sequestration contribution of biochar hinges not only on its fused aromatic structure but also on its abiotic and biotic reactions with soil components across its entire life cycle in the environment. For instance, minerals and microorganisms can deeply participate in the mineralization or complexation of the labile (soluble and easily decomposable) and even recalcitrant fractions of biochar, thereby profoundly affecting C cycling and sequestration in soil. Here we identify five key issues closely related to the application of biochar for C sequestration in soil and review its outstanding advances. Specifically, the terms use of biochar, pyrochar, and hydrochar, the stability of biochar in soil, the effect of biochar on the flux and speciation changes of C in soil, the emission of nitrogen-containing greenhouse gases induced by biochar production and soil application, and the application barriers of biochar in soil are expounded. By elaborating on these critical issues, we discuss the challenges and knowledge gaps that hinder our understanding and application of biochar for C sequestration in soil and provide outlooks for future research directions. We suggest that combining the mechanistic understanding of biochar-to-soil interactions and long-term field studies, while considering the influence of multiple factors and processes, is essential to bridge these knowledge gaps. Further, the standards for biochar production and soil application should be widely implemented, and the threshold values of biochar application in soil should be urgently developed. Also needed are comprehensive and prospective life cycle assessments that are not restricted to soil C sequestration and account for the contributions of contamination remediation, soil quality improvement, and vegetation C sequestration to accurately reflect the total benefits of biochar on C sequestration in soil.

Long-term nitrogen deposition inhibits soil priming effects by enhancing phosphorus limitation in a subtropical forest

It is widely accepted that phosphorus (P) limits microbial metabolic processes and thus soil organic carbon (SOC) decomposition in tropical forests. Global change factors like elevated atmospheric nitrogen (N) deposition can enhance P limitation, raising concerns about the fate of SOC. However, how elevated N deposition affects the soil priming effect (PE) (i.e., fresh C inputs induced changes in SOC decomposition) in tropical forests remains unclear. We incubated soils exposed to 9 years of experimental N deposition in a subtropical evergreen broadleaved forest with two types of 13 C-labeled substrates of contrasting bioavailability (glucose and cellulose) with and without P amendments. We found that N deposition decreased soil total P and microbial biomass P, suggesting enhanced P limitation. In P unamended soils, N deposition significantly inhibited the PE. In contrast, adding P significantly increased the PE under N deposition and by a larger extent for the PE of cellulose (PEcellu ) than the PE of glucose (PEglu ). Relative to adding glucose or cellulose solely, adding P with glucose alleviated the suppression of soil microbial biomass and C-acquiring enzymes induced by N deposition, whereas adding P with cellulose attenuated the stimulation of acid phosphatase (AP) induced by N deposition. Across treatments, the PEglu increased as C-acquiring enzyme activity increased, whereas the PEcellu increased as AP activity decreased. This suggests that P limitation, enhanced by N deposition, inhibits the soil PE through varying mechanisms depending on substrate bioavailability; that is, P limitation regulates the PEglu by affecting soil microbial growth and investment in C acquisition, whereas regulates the PEcellu by affecting microbial investment in P acquisition. These findings provide new insights for tropical forests impacted by N loading, suggesting that expected changes in C quality and P limitation can affect the long-term regulation of the soil PE.

Root litter quality drives the dynamic of native mineral-associated organic carbon in a temperate agricultural soil

Background and aims

Understanding the fate and residence time of organic matter added to soils, and its effect on native soil organic carbon (SOC) mineralisation is key for developing efficient SOC sequestration strategies. Here, the effect of litter quality, particularly the carbon-to-nitrogen (C:N) ratio, on the dynamics of particulate (POC) and mineral-associated organic carbon (MAOC) were studied.

Methods

In a two-year incubation experiment, root litter samples of the C4-grass Miscanthus with four different C:N ratios ranging from 50 to 124 were added to a loamy agricultural topsoil. In an additional treatment, ammonium nitrate was added to the C:N 124 litter to match the C:N 50 litter input ratio. Soils were size-fractionated after 6, 12 and 24 months and δ13C was measured to determine the proportion of new and native POC and MAOC. Litter quality was further assessed by mid-infrared spectroscopy and compound peak analysis.

Results

Litter quality strongly affected SOC dynamics, with total SOC losses of 42.5 ± 3.0% in the C:N 50 treatment and 48.9 ± 3.0% in the C:N 124 treatment after 24 months. Largest treatment effects occurred in mineralisation of native MAOC, which was strongly primed by litter addition. The N amendment in the C:N 124 treatment did not alleviate this potential N mining flux.

Conclusion

Litter quality plays a major role in overall SOC dynamics, and priming for N mining from the MAOC pool could be a dominant mechanism. However, adding N did not compensate for poor litter quality, highlighting the role of litter quality beyond stoichiometric imbalances.

Implications of CO2 emissions on the main land and forest uses in the Brazilian Amazon

The emission of soil carbon dioxide (CO₂) in agricultural areas is a process that results from the interaction of several factors such as climate, soil, and land management practices. Agricultural practices directly affect the carbon dynamics between the soil and atmosphere. Herein, we evaluated the temporal variability (2020/2021 crop season) of soil CO₂ emissions and its relationship with related variables, such as the CO₂ flux model, enhanced vegetation index (EVI), gross primary productivity (GPP), and leaf area index (LAI) from orbital data and soil temperature, soil moisture, and soil CO₂ emissions from in situ collections from native forests, productive pastures, degraded pastures, and areas of high-yield potential soybean and low-yield potential soybean production. A significant influence (p < 0.01) was observed for all variables and between the different land uses and occupation types. September and October had lower emissions of soil CO₂ and low means of soil moisture and soil temperature, and no differences were observed among the treatments. On the other hand, there was a significant effect of the CO₂ flux model in productive pastures, high-yield potential soybean areas, and low-yield potential soybean areas. The months with the highest CO₂ flux values in the model, regardless of land use and land cover, were October and November, which is the beginning of the rainy season. There were positive correlations between soil CO₂ emissions and GPP (0.208), LAI (0.354), EVI (0.363), and soil moisture (0.280) and negative correlations between soil CO₂ emissions and soil temperature (-0.240) and CO₂ flux model (-0.314) values. Land use and land cover showed negative correlations with these variables, except for the CO₂ flux model variable. Soil CO₂ emission values were lower for high-yield potential soybean areas (averages from 0.834 to 6.835 μmol m^-2 s^-1) and low-yield potential soybean areas (from 0.943 to 5.686 μmol m^-2 s^-1) and higher for native forests (from 2.279 to 8.131 μmol m^-2 s^-1), whereas the opposite was true for the CO₂ flux model.

A Data-Validated Stoichiometric Model for the Priming Effect

Due to global warming, interest in sequestering carbon by appropriately managing soils has contributed to studying the dynamic exchange of carbon and nitrogen in soils and atmospheric CO[Formula: see text]. The priming effect, or the intensified CO[Formula: see text] emissions from soil organic matter (SOM) decomposition in short periods by using labile substrates, has been a topic of interest over the last decades. A combination of two experimentally supported mechanisms explains the priming effect phenomenon, and for the first time, we combine them in a novel stoichiometric model. The model considers the effects of labile substrate utilization in soils during the SOM decomposition and how CO[Formula: see text] emissions rates are affected. Laboratory data and a local sensitivity analysis validate the accuracy and robustness of the model. We find an optimized ratio of labile carbon and nitrogen that intensifies SOM decomposition for different soil features. The priming effect is weakened as C/N in SOM increases for nutrient-poor soils and is independent of C/N in SOM for nutrient-rich soils. The time required for microorganisms to decompose SOM at its maximum rate is delayed only for labile carbon treatments and poor-nutrient soils but remains constant otherwise. Finally, the SOM degradation efficiency determines the priming effect's acceleration or reduction under different soil treatments.

Identification of driving factors of lignocellulose degrading enzyme genes in different microbial communities during rice straw composting

The study aims to clarify the driving factors of lignocellulose degrading enzyme genes abundance during rice straw composting. Lignocellulose degrading strains b4 (Bacillus subtilis), z1 (Aspergillus fumigatus) were inoculated into pure culture, respectively. Meanwhile, three rice straw composting groups were set up, named CK (control), B4 (inoculating b4) and Z1 (inoculating z1). Results confirmed the composition of functional genes related to lignocellulose metabolism for strains. Lignocellulose degrading enzyme genes abundance was up-regulated by inoculation, which promoted the decomposition of lignocellulose. Modular microorganisms, such as Actinobacteria, Proteobacteria, Ascomycetes and Basidiomycetes, were identified as driving factors that affected lignocellulose degrading enzyme genes abundance. pH, organic matter and soluble sugar content affected lignocellulose degrading enzyme genes abundance by affecting modular microorganisms. In addition, a potential priming effect was put forward based on the driving factors. This study provided theoretical guidance for regulating the abundance of lignocellulose degrading enzyme genes to promote lignocellulose degradation.

Application of soil amendments mitigates phytotoxic effects on Solanum melongena L. and Lycopersicon esculentum L. seedlings exposed to chlorpyrifos and dimethoate pesticides

This field study was done to study the effects of pesticides chlorpyrifos and dimethoate singly and in combination with soil amendments like chemical fertilizer (CF), farmyard manure (FM), and 50% CF + 50% FM (CM) on various indices of growth, physio-biochemical parameters of brinjal, and their residual effect in tomato seedlings. As compared to the control, the decrease of 9.5 and 5.5%, 8.9 and 5.0% in fresh weight, dry weight respectively was recorded in the pesticide-only treatment in the brinjal crop. Pesticides when applied in combination with soil amendments depicted the highest growth of 105.4 and 118.2%, 104.1 and 115.1% in pesticides + CF treatment, 72.7 and 85.1%, 68.1 and 78.1% in pesticides + CM treatment, and 64.4 and 74.0%, 62.7 and 65.7% in pesticides + FM treatment compared to control. In tomato seedlings, the pesticides + CF treatment exhibited the lowest growth indices (25.5 and 31.9%, 26.4 and 28.8%) across the combined treatments while pesticide-only treatment depicted minimum growth compared to the control. In the case of photosynthesis rate and antioxidant activity, the combined treatments showed the trend as pesticides + CF > pesticides + CM > pesticides + FM in the brinjal crop; however, the trend became somewhat reversed in the tomato crop. The results indicated that soil-amended practices modulated pesticide-induced damage by upregulating photosynthetic performance, chlorophyll a fluorescence, and antioxidant balancing which might be associated with the mitigation of ROS-induced pesticide toxicity, and the effect was more pronounced with CM. Furthermore, our study was supported by non-metric-multidimensional scaling (NMDS)-constructed ordination plots by showing spatial patterns in different variables. The study might help in taking management decision to design mitigation actions for government and non-government agency at the farmers' level.

Nitrogen availability mediates soil carbon cycling response to climate warming: A meta-analysis

Global climate warming may induce a positive feedback through increasing soil carbon (C) release to the atmosphere. Although warming can affect both C input to and output from soil, direct and convincing evidence illustrating that warming induces a net change in soil C is still lacking. We synthesized the results from field warming experiments at 165 sites across the globe and found that climate warming had no significant effect on soil C stock. On average, warming significantly increased root biomass and soil respiration, but warming effects on root biomass and soil respiration strongly depended on soil nitrogen (N) availability. Under high N availability (soil C:N ratio < 15), warming had no significant effect on root biomass, but promoted the coupling between effect sizes of root biomass and soil C stock. Under relative N limitation (soil C:N ratio > 15), warming significantly enhanced root biomass. However, the enhancement of root biomass did not induce a corresponding C accumulation in soil, possibly because warming promoted microbial CO₂ release that offset the increased root C input. Also, reactive N input alleviated warming-induced C loss from soil, but elevated atmospheric CO₂ or precipitation increase/reduction did not. Together, our findings indicate that the relative availability of soil C to N (i.e., soil C:N ratio) critically mediates warming effects on soil C dynamics, suggesting that its incorporation into C-climate models may improve the prediction of soil C cycling under future global warming scenarios.

Nonlinear Effects Induced by Interactions among Functional Groups of Bacteria and Fungi Regulate the Priming Effect in Malagasy Soils

The priming effect (PE) occurs when fresh organic matter (FOM) supplied to soil alters the rate of decomposition of older soil organic matter (SOM). The PE can be generated by different mechanisms driven by interactions between microorganisms with different live strategies and decomposition abilities. Among those, stoichiometric decomposition results from FOM decomposition, which induces the decomposition of SOM by the release of exoenzymes by FOM-decomposers. Nutrient mining results from the co-metabolism of energy-rich FOM with nutrient-rich SOM by SOM-decomposers. While existing statistical approaches enable measurement of the effect of community composition (linear effect) on the PE, the effect of interactions among co-occurring populations (non-linear effect) is more difficult to grasp. We compare a non-linear, clustering approach with a strictly linear approach to separately and comprehensively capture all linear and non-linear effects induced by soil microbial populations on the PE and to identify the species involved. We used an already published data set, acquired from two climatic transects of Madagascar Highlands, in which the high-throughput sequencing of soil samples was applied parallel to the analysis of the potential capacity of microbial communities to generate PE following a ¹³C-labeled wheat straw input. The linear and clustering approaches highlight two different aspects of the effects of microbial biodiversity on SOM decomposition. The comparison of the results enabled identification of bacterial and fungal families, and combinations of families, inducing either a linear, a non-linear, or no effect on PE after incubation. Bacterial families mainly favoured a PE proportional to their relative abundances in soil (linear effect). Inversely, fungal families induced strong non-linear effects resulting from interactions among them and with bacteria. Our findings suggest that bacteria support stoichiometric decomposition in the first days of incubation, while fungi support mainly the nutrient mining of soil's organic matter several weeks after the beginning of incubation. Used together, the clustering and linear approaches therefore enable the estimation of the relative importance of linear effects related to microbial relative abundances, and non-linear effects related to interactions among microbial populations on soil properties. Both approaches also enable the identification of key microbial families that mainly regulate soil properties.

The priming effects of plant leachates on dissolved organic matter degradation in water depend on leachate type and water stability

The modification of dissolved organic matter (DOM) degradation by plant carbon inputs represents a critical biogeochemical process that controls carbon dynamics. However, the priming effects (PEs) different plant tissues induce on the degradation of DOM pools with different stabilities remain unknown. In this study, PEs, induced by different tissue leachates of Phragmites australis, were evaluated via changes in DOM components and properties of both fresh and tidal water (with different stabilities). The results showed that DOM derived from different plant tissue leachates differed in composition and bioavailability. Inputs of tissue leachates induced PEs with different intensities and directions (negative or positive) on DOM degradation of fresh and tidal water. In fresh water, the PEs of leaf and root leachates were significantly higher than those of stem and rhizome leachates. The PE direction changed for DOM degradation between fresh and tidal water. The addition of leaf and root leachates tended to induce positive PEs on DOM degradation of fresh water, while resulting in negative PEs on DOM degradation of tidal water. Negative PEs for tidal water DOM may be due to preferential utilization of microbes, high salinity, and/or the promotion of exogenous DOM production from plant tissues. The results indicate that intensity and direction of PEs induced by plant leachates depend on both leachate type and water stability. The findings highlight the necessity to examine the nature of exogenous and native DOM when interpreting the interactive processes that regulate DOM degradation.

Nitrogen deficiency accelerates soil organic carbon decomposition in temperate degraded grasslands

The impacts of nitrogen (N) availability on soil organic carbon (SOC) decomposition were often explored based on N enrichment (N+) experiments. However, many natural and anthropogenic processes often reduce soil N availability. There is no direct evidence about how decreased N availability (N-) affects SOC decomposition, and the mechanisms of microbe-driven SOC decomposition in response to N availability remain unclear. Here, we used ion-exchange membranes to simulate N-. Soil samples from four temperate grassland sites, ranging from non-degradation to extreme degradation, were incubated with the N- and N+ treatments. We found that the total cumulative carbon (C) release was promoted by the N- treatment (8.60 to 87.30 mg C/g C_inital) but was inhibited by the N+ treatment (-129.81 to -16.49 mg C/g C_inital), regardless of the degradation status. N- dramatically increased recalcitrant C decomposition by increasing soil pH at all grassland sites; while did not affect or even decreased labile C decomposition by significantly increasing microbial C use efficiency and soil microbial biomass N. Interestingly, the effects of N- and N+ on SOC decomposition was asymmetric; with increased grassland degradation, the SOC decomposition was more sensitive to N- than to N+. Our results provide direct evidence for the different effects and mechanisms of N- on SOC decomposition and should be considered in soil process models to better predict the response of the nutrient cycle to global change.

Time-dependent effects of microplastics on soil bacteriome

Microplastic threats to biodiversity, health and ecological safety are adding to concern worldwide, but the real impacts on the functioning of organisms and ecosystems are obscure owing to their inert characteristics. Here we investigated the long-lasting ecological effects of six prevalent microplastic types: polyethylene (PE), polypropylene (PP), polyamide (PA), polystyrene (PS), polyethylene terephthalate (PET), and polyvinyl chloride (PVC) on soil bacteria at a 2 % (w/w) level. Due to the inertia and lack of available nitrogen of these microplastics, their effects on bacteriome tended to converge after one year and were strongly different from their short-term effects. The soil volumes around microplastics were very specific, in which the microplastic-adapted bacteria (e.g., some genera in Actinobacteria) were enriched but the phyla Bacteroidetes and Gemmatimonadetes declined, resulting in higher microbial nitrogen requirements and reduced organic carbon mineralization. The reshaped bacteriome was specialized in the genetic potential of xenobiotic and lipid metabolism as well as related oxidation, esterification, and hydrolysis processes, but excessive oxidative damage resulted in severe weakness in community genetic information processing. According to model predictions, microplastic effects are indirectly derived from nutrients and oxidative stress, and the effects on bacterial functions are stronger than on structure, posing a heavy risk to soil ecosystems.

Trade-offs between fertilizer-N availability and Cd pollution potential under crop straw incorporation by 15 N stable isotopes in rice

Application of crop residues and chemical nitrogen (N) fertilizer is a conventional practice for achieving high yield in a rice system. However, the fallacious combination of N fertilizers with crop straw not only significantly reduces the N use efficiencies (NUEs) but also leads to serious environmental problems. The present study employed five treatments including no N fertilization and no straw incorporation (ck), N fertilization incorporation only (S0), N fertilization with 40% straw (S₄₀), N fertilization with 60% straw (S₆₀), and N fertilization with 100% straw (S₁₀₀) to improve N use efficiency as well as reduced Cd distribution in rice. The crop yields were largely enhanced by fertilization ranging from 13 to 52% over the straw addition treatments. Compared with ck, N fertilizer input significantly decreased soil pH, while DOC contents were raised in response to straw amendment, reaching the highest in S₆₀ and S₁₀₀ treatments, respectively. Moreover, straw addition substantially impacted the Cd accumulation and altered the bacterial community structure. The soil NH₄⁺-N concentration under S₀ performed the maximum in yellow soil, while the minimum in black soil compared to straw-incorporated pots. In addition, the soil NO₃^--N concentration in straw-incorporated plots tended to be higher than that in straw-removed plots in both soils, indicating that crop straw triggering the N mineralization was associated with native soil N condition. Furthermore, the NUE increased with ¹⁵ N uptake in the plant, and the residual ¹⁵ N in soil was increased by 26.8% with straw addition across four straw application rates. Overall, our study highlights the trade-offs between straw incorporation with N fertilizer in eliminating potential Cd toxicity, increasing fertilizer-N use efficiencies and help to provide a feasible agricultural management.

Utility of wood ash, paper sludge and biochar for the mitigation of greenhouse gases emissions from acid boreal soils

Land-use change in the boreal forest region leads to agriculture to be carried out on acid, shallow and low fertility soils. To correct soil fertility and promote crop productivity, manure and inorganic fertilizers are added, increasing the risk for greenhouse gas emissions (GHGE). To reduce the reliance on synthetic soil amendments while taking advantage of locally relevant industrial by-products, wood ash (WA) and paper sludge (SL) have been proposed as soil amendments for a range of soil types. We posited that amending soils with WA, SL and biochar will improve soil health parameters and fertility of boreal soils. Microbial activity resulting to nitrogen losses and availability were assessed. WA had a stronger ameliorative effect on acid boreal soils compared to SL. Both WA and SL increased soil microbial biomass and basal respiration resulting in higher net mineralization and thus significant increases in CO₂ emissions. Co-application of urea with WA or SL further increased net mineralization compared to when used independently. Conversely, the biochar's effect was short-lived and not significant. Nevertheless, addition of biochar was shown to reduce CO₂ emissions in all cases except in WA amended soils. No significant differences were observed in CH₄ emissions across all treatments. WA and SL may improve soil fertility and quality but could also contribute significantly to GHG emissions in acid boreal soils. Further research is recommended to assess the mitigating effect of various biochar feedstocks on GHG emissions when co-applied with WA and SL.

Degradation of Bio-Based and Biodegradable Plastic and Its Contribution to Soil Organic Carbon Stock

Expanding the use of environmentally friendly materials to protect the environment is one of the key factors in maintaining a sustainable ecological balance. Poly(butylene succinate-co-adipate) (PBSA) is considered among the most promising bio-based and biodegradable plastics for the future with a high number of applications in soil and agriculture. Therefore, the decomposition process of PBSA and its consequences for the carbon stored in soil require careful monitoring. For the first time, the stable isotope technique was applied in the current study to partitioning plastic- and soil-originated C in the CO₂ released during 80 days of PBSA decomposition in a Haplic Chernozem soil as dependent on nitrogen availability. The decomposition of the plastic was accompanied by the C loss from soil organic matter (SOM) through priming, which in turn was dependent on added N. Nitrogen facilitated PBSA decomposition and reduced the priming effect during the first 6 weeks of the experiment. During the 80 days of plastic decomposition, 30% and 49% of the released CO₂ were PBSA-derived, while the amount of SOM-derived CO₂ exceeded the corresponding controls by 100.2 and 132.3% in PBSA-amended soil without and with N fertilization, respectively. Finally, only 4.1% and 5.4% of the PBSA added into the soil was mineralized to CO₂, in the treatments without and with N amendment, respectively.

Soil microbial community structure dynamics shape the rhizosphere priming effect patterns in the paddy soil

Microbial community structure plays a crucial part in soil organic carbon (SOC) decomposition and variation of rhizosphere priming effects (RPEs) during plant growth. However, it is still uncertain how bacterial community structure regulates RPEs in soil and how RPE patterns respond to plant growth. Therefore, we conducted an experiment to examine the RPE response to plant growth and nitrogen (N) addition (0 (N0), 150 (N150), and 300 (N300) kg N ha^-1) using the ¹³C natural abundance method in a C₃ soil (paddy soil) - C₄ plant (maize, Zea mays L.) system; we then explored the underlying biotic mechanisms using 16S rRNA sequencing techniques. Networks were constructed to identify keystone taxa and to analyze the correlations between network functional modules of bacterial community and C decomposition. The results indicated that negative and positive RPEs occurred on Day 30 and Day 75 after maize planting, respectively. Bacterial community structure significantly changed and tended to shift from r-strategists toward K-strategists with changing labile C: N stoichiometry and soil pH during plant growth stages. The different network modules of bacterial community were aggregated in response to RPE pattern variation. Caulobacteraceae, Bacillus, and Chitinophagaceae were keystone taxa on Day 30, while Gemmatimonas, Candidatus Koribacter, and Xanthobacteraceae were keystone taxa on Day 75. Moreover, keystone taxa with different C utilization strategies were significantly different between the two growth stages and related closely to different RPE patterns. This study provides deeper insights into the network structure of bacterial communities corresponding to RPE patterns and emphasizes the significance of keystone taxa in RPE variation.

Dynamic carbon-nitrogen coupling under global change

Carbon-nitrogen coupling is a fundamental principle in ecosystem ecology. However, how the coupling responds to global change has not yet been examined. Through a comprehensive and systematic literature review, we assessed how the dynamics of carbon processes change with increasing nitrogen input and how nitrogen processes change with increasing carbon input under global change. Our review shows that nitrogen input to the ecosystem mostly stimulates plant primary productivity but inconsistently decreases microbial activities or increases soil carbon sequestration, with nitrogen leaching and nitrogenous gas emission rapidly increasing. Nitrogen fixation increases and nitrogen leaching decreases to improve soil nitrogen availability and support plant growth and ecosystem carbon sequestration under elevated CO₂ and temperature or along ecosystem succession. We conclude that soil nitrogen cycle processes continually adjust to change in response to either overload under nitrogen addition or deficiency under CO₂ enrichment and ecosystem succession to couple with carbon cycling. Indeed, processes of both carbon and nitrogen cycles continually adjust under global change, leading to dynamic coupling in carbon and nitrogen cycles. The dynamic coupling framework reconciles previous debates on the "uncoupling" or "decoupling" of ecosystem carbon and nitrogen cycles under global change. Ecosystem models failing to simulate these dynamic adjustments cannot simulate carbon-nitrogen coupling nor predict ecosystem carbon sequestration well.

Incorporation of Substrates and Inoculums as Operational Strategies to Promote Lignocellulose Degradation in Composting of Green Waste—A Pilot-Scale Study

Composting is a sustainable alternative for green waste (GW) valorization contributing to the circular bioeconomy. However, the processing time must be reduced and the end-product quality must be improved. This study determined the effect of the incorporation of processed food waste (PFW), unprocessed food (UPFW), sawdust (SW), phosphate rock (PR) and a specific bacterial inoculum on GW-composting process parameters and product quality. Three treatments were evaluated in 120 kg piles: (i) TA: (GW + UPFW + PFW + inoculum), (ii) TB (GW + UPFW + PFW), and (iii) TC (GW). An inoculum of Bacillus sp. and Paenibacillus sp. was incorporated in the cooling phase for TA. On the other hand, the effect of the inoculum at the laboratory scale (20 kg reactors) was compared with that found at the pilot scale (120 kg piles). The incorporation of FW, SW, PR and the inoculum increased the amount of lignocellulose biodegradation (TA: 29.1%; TB: 22.7%; TC: 18.2%), which allowed for a reduction of up to 14 days of processing time. The product obtained for TA had a similar quality to the other two treatments, although a lower phytotoxicity was determined according to the germination index (TA: 95%; TB: 85%; and TC: 83%). The final product of TA showed the best agricultural characteristics with pH 8.3, TOC of 24.8%, TN of 1.32%, and GI of 98.8%. Finally, the scaling effect with the bacterial inoculum was shown to affect parameters such as the TOC, TN, GI, and, to a lesser extent, temperature and pH. The results obtained in this paper highlight the importance of optimizing the composting of GW, specifically with the use of co-substrates and specific inocula, which can be of interest for composting materials with a high content of lignocellulose such as GW.

Effects of defoliation and nitrogen on carbon dioxide (CO2) emissions and microbial communities in soils of cherry tree orchards

Background

In farmland, microbes in soils are affected by exogenous carbon, nitrogen, and soil depth and are responsible for soil organic carbon (SOC) mineralization. The cherry industry has been evolving rapidly in northwest China and emerged as a new source of income for local farmers to overcome poverty. Accordingly, it is highly imperative to probe the effect of defoliation and nitrogen addition on carbon dioxide (CO₂) emissions and microbial communities in soils of dryland cherry orchards.

Methods

CO₂ emissions and microbial communities were determined in soil samples at three depths, including 0-10 cm, 10-30 cm, and 30-60 cm, from a 15-year-old rain-fed cherry orchard. The samples were respectively incubated with or without 1% defoliation under three input levels of nitrogen (0 mg kg^-1, 90 mg kg^-1, and 135 mg kg^-1) at 25°C in the dark for 80 days.

Results

Defoliation and nitrogen addition affected CO₂ emissions and microbial communities and increased microbial biomass carbon (MBC), the activity of soil catalase, alkaline phosphatase, and cellulase in soils of the dryland cherry orchard. The culture with defoliation significantly promoted CO₂ emissions in soils at the three depths mainly by increasing the MBC, catalase, alkaline phosphatase, and cellulase activities, resulted in positive priming index. Nitrogen addition elevated the MBC and changed soil enzymes and reduced CO₂ emissions in soils at the three depths. Moreover, the priming index was higher in deep soils than in top and middle soils under the condition of defoliation and nitrogen addition. No significant differences were observed in the soil bacterial diversity (Chao1, Shannon, and Simpson) among all treatments. Meanwhile, the relative abundance of Proteobacteria was markedly increased and that of Acidobacteria was substantially diminished in soils at the three depths by defoliation and nitrogen addition. The results sustained that defoliation and nitrogen can regulate SOC dynamics by directly and indirectly affecting soil microbial activities and communities. As a result, the combination of defoliation return and nitrogen fertilization management is a promising strategy to increase SOC and promote soil quality in dryland cherry orchards.

Soil organic matter molecular composition with long-term detrital alterations is controlled by site-specific forest properties

Forest ecosystems are important global soil carbon (C) reservoirs, but their capacity to sequester C is susceptible to climate change factors that alter the quantity and quality of C inputs. To better understand forest soil C responses to altered C inputs, we integrated three molecular composition published data sets of soil organic matter (SOM) and soil microbial communities for mineral soils after 20 years of detrital input and removal treatments in two deciduous forests: Bousson Forest (BF), Harvard Forest (HF), and a coniferous forest: H.J. Andrews Forest (HJA). Soil C turnover times were estimated from radiocarbon measurements and compared with the molecular-level data (based on nuclear magnetic resonance and specific analysis of plant- and microbial-derived compounds) to better understand how ecosystem properties control soil C biogeochemistry and dynamics. Doubled aboveground litter additions did not increase soil C for any of the forests studied likely due to long-term soil priming. The degree of SOM decomposition was higher for bacteria-dominated sites with higher nitrogen (N) availability while lower for the N-poor coniferous forest. Litter exclusions significantly decreased soil C, increased SOM decomposition state, and led to the adaptation of the microbial communities to changes in available substrates. Finally, although aboveground litter determined soil C dynamics and its molecular composition in the coniferous forest (HJA), belowground litter appeared to be more influential in broadleaf deciduous forests (BH and HF). This synthesis demonstrates that inherent ecosystem properties regulate how soil C dynamics change with litter manipulations at the molecular-level. Across the forests studied, 20 years of litter additions did not enhance soil C content, whereas litter reductions negatively impacted soil C concentrations. These results indicate that soil C biogeochemistry at these temperate forests is highly sensitive to changes in litter deposition, which are a product of environmental change drivers.

A distinct sensitivity to the priming effect between labile and stable soil organic carbon

Soil organic carbon (SOC) is a mixture of various carbon (C) compounds with different stability, which can be distinctly affected by the priming effect (PE). However, little is known about how the PE changes with SOC stability. We address this issue by combining results from two experiments and a metaanalysis. We found that the PE increased with the prolongation of soil preincubation, suggesting that higher PE occurred for more stable SOC than for labile SOC. This was further supported by the metaanalysis of 42 observations. There were significant negative relationships between the difference in PE (ΔPE) between labile and more stable SOC and their differences in SOC, microbial biomass C and soil C : N ratio, indicating that soil C availability exerts a vital control on ΔPE. We conclude that, compared with labile SOC, stable SOC can be more vulnerable to priming once microbes are provided with exogenous C substrates. This high vulnerability of stable SOC to priming warrants more attention in future studies on SOC cycling and global change.

5300-Year-old soil carbon is less primed than young soil organic matter

Soils harbor more than three times as much carbon (C) as the atmosphere, a large fraction of which (stable organic matter) serves as the most important global C reservoir due to its long residence time. Litter and root inputs bring fresh organic matter (FOM) into the soil and accelerate the turnover of stable C pools, and this phenomenon is termed the "priming effect" (PE). Compared with knowledge about labile soil C pools, very little is known about the vulnerability of stable C to priming. Using two soils that substantially differed in age (500 and 5300 years before present) and in the degree of chemical recalcitrance and physical protection of soil organic matter (SOM), we showed that leaf litter amendment primed 264% more organic C from the young SOM than from the old soil with very stable C. Hierarchical partitioning analysis confirmed that SOM stability, reflected mainly by available C and aggregate protection of SOM, is the most important predictor of leaf litter-induced PE. The addition of complex FOM (i.e., leaf litter) caused a higher bacterial oligotroph/copiotroph (K-/r-strategists) ratio, leading to a PE that was 583% and 126% greater than when simple FOM (i.e., glucose) was added to the young and old soils, respectively. This implies that the PE intensity depends on the chemical similarity between the primer (here FOM) and SOM. Nitrogen (N) mining existed when N and simple FOM were added (i.e., Glucose+N), and N addition raised the leaf litter-induced PE in the old soil that had low N availability, which was well explained by the microbial stoichiometry. In conclusion, the PE induced by FOM inputs strongly decreases with increasing SOM stability. However, the contribution of stable SOM to CO₂ efflux cannot be disregarded due to its huge pool size.

Organic matter contributions to nitrous oxide emissions following nitrate addition are not proportional to substrate-induced soil carbon priming

The addition of carbon (C) substrate often modifies the rate of soil organic matter (SOM) decomposition. This is known as the priming effect. Nitrous oxide (N₂O) emissions from soil are also linked to C substrate dynamics; however, the relationship between the priming effect and N₂O emissions from soil is not understood. This study aimed to investigate the effects of C and N substrate addition on the linkages between SOM priming and N₂O emissions. We applied ¹³C-labelled substrates (acetate, butyrate, glucose; 80 μg C g^-1), with water as a control, and ¹⁵N-labelled N (300 μg N g^-1 soil, potassium nitrate) to three different soils, and, after 3 days, we measured the effects on the priming of SOM and sources of N₂O emission. Carbon substrate addition increased both CO₂- and SOM-derived N₂O emissions in the presence of exogenous N. Emissions of CO₂ and N₂O from soils with added glucose (mean ± standard deviation, 0.73 ± 0.13 μmol m^-2 s^-1 and 21.4 ± 12.1 mg N m^-2 h^-1) were higher (p < 0.05) than those from soils treated with acetate (0.64 ± 0.11 μmol m^-2 s^-1 and 10.9 ± 6.5 mg N m^-2 h^-1) or butyrate (0.61 ± 0.11 μmol m^-2 s^-1 and 11.0 ± 6.6 mg N m^-2 h^-1), respectively. Acetate addition induced a stronger (p < 0.05) priming effect on soil C (0.07 ± 0.09 μmol C m^-2 s^-1) than that for glucose (0.02 ± 0.10 μmol C m^-2 s^-1), while butyrate addition resulted in negative priming (-0.09 ± 0.05 μmol C m^-2 s^-1). SOM-derived N₂O emissions were relatively low from soils with butyrate addition (1.4 ± 1.5 mg N m^-2 h^-1) compared with acetate (2.9 ± 2.3 mg N m^-2 h^-1) or glucose (9.2 ± 4.5 mg N m^-2 h^-1). There was no clear relationship between the priming effect and SOM-derived N₂O emissions. The observed priming effect related to the potential electron donor supply of the C substrates was not observed. There is a need to further examine the role of soil priming in relation to soil N₂O emissions.

Priming of soil organic carbon mineralization and its temperature sensitivity in response to vegetation restoration in a karst area of Southwest China

Plant residue input alters native soil organic carbon (SOC) mineralization through the priming effect, which strongly controls C sequestration during vegetation restoration. However, the effects of different vegetation types on SOC priming and the underlying microbial mechanisms due to global warming are poorly understood. To elucidate these unknowns, the current study quantified soil priming effects using ¹³C-labeled maize residue amendments and analyzed the community structure and abundances in the soils of a vegetation succession gradient (maize field (MF), grassland (GL), and secondary forest (SF)) from a karst region under two incubation temperatures (15 °C and 25 °C). Results revealed that after 120 d of incubation, vegetation restoration increased the soil priming effects. Compared to MF, the priming effects of SF at 15 °C and 25 °C increased by 142.36 % and 161.09 %, respectively. This may be attributed to a high C/N ratio and low-N availability (NO₃^-), which supports the "microbial nitrogen mining" theory. Variations in soil priming were linked to changes in microbial properties. Moreover, with vegetation restoration, the relative abundance of Actinobacteria (copiotrophs) increased, while Ascomycota (oligotrophs) decreased, which accelerated native SOC decomposition. Co-occurrence network analysis indicated that the cooperative interactions of co-existing keystone taxa may facilitate SOC priming. Furthermore, structural equation modeling (SEM) indicated that changes in the priming effects were directly related to the fungal Shannon index and microbial biomass C (MBC), which were affected by soil C/N and NO₃^-. Warming significantly decreased soil priming, which may be attributed to the increase in microbial respiration (qCO₂) and decreased MBC. The temperature sensitivity (Q₁₀) of SOC mineralization was higher after residue amendment, but significant differences were not detected among the vegetation types. Collectively, our results indicated that the intensity of priming effects was dependent on vegetation type and temperature. Microbial community alterations and physicochemical interactions played important roles in SOC decomposition and sequestration.

Oxygen availability regulates the quality of soil dissolved organic matter by mediating microbial metabolism and iron oxidation

Dissolved organic matter (DOM) plays a vital role in biogeochemical processes and in determining the responses of soil organic matter (SOM) to global change. Although the quantity of soil DOM has been inventoried across diverse spatio-temporal scales, the underlying mechanisms accounting for variability in DOM dynamics remain unclear especially in upland ecosystems. Here, a gradient of SOM storage across 12 croplands in northeast China was used to understand links between DOM dynamics, microbial metabolism, and abiotic conditions. We assessed the composition, biodegradability, and key biodegradable components of DOM. In addition, SOM and mineral-associated organic matter (MAOM) composition, soil enzyme activities, oxygen availability, soil texture, and iron (Fe), Fe-bound organic matter, and nutrient concentrations were quantified to clarify the drivers of DOM quality (composition and biodegradability). The proportion of biodegradable DOM increased exponentially with decreasing initial DOM concentration due to larger fractions of depolymerized DOM that was rich in small-molecular phenols and proteinaceous components. Unexpectedly, the composition of DOM was decoupled from that of SOM or MAOM, but significantly related to enzymatic properties. These results indicate that microbial metabolism exhibited a dominant role in DOM generation. As DOM concentration declined, increased soil oxygen availability regulated DOM composition and enhanced its biodegradability mainly through mediating microbial metabolism and Fe oxidation. The oxygen-induced oxidation of Fe(II) to Fe(III) removed complex DOM compounds with large molecular weight. Moreover, increased oxygen availability stimulated oxidase-catalyzed depolymerization of aromatic substances, and promoted production of protein-like DOM components due to lower enzymatic C/N acquisition ratio. As global changes in temperature and moisture will have large impacts on soil oxygen availability, the role of oxygen in regulating DOM dynamics highlights the importance of integrating soil oxygen supply with microbial metabolism and Fe redox status to improve model predictions of soil carbon under climate change.

Greenhouse gas fluxes (CO2, N2O and CH4) of pea and maize during two cropping seasons: Drivers, budgets, and emission factors for nitrous oxide

Agriculture contributes considerably to the increase of global greenhouse gas (GHG) emissions. Hence, magnitude and drivers of temporal variations in carbon dioxide (CO2), nitrous oxide (N2O) and methane (CH4) fluxes in croplands are urgently needed to develop sustainable, climate-smart agricultural practices. However, our knowledge of GHG fluxes from croplands is still very limited. The eddy covariance technique was used to quantify GHG budgets and N2O emission factors (EF) for pea and maize in Switzerland. The random forest technique was applied for gap-filling N2O and CH4 fluxes as well as to determine the relevance of environmental, vegetation vs. management drivers of the GHG fluxes during two cropping seasons. Environmental (i.e., net radiation, soil water content, soil temperature) and vegetation drivers (i.e., vegetation height) were more important drivers for GHG fluxes at field scale than time since management for the two crop species. Both crops acted as GHG sinks between sowing and harvest, clearly dominated by net CO2 fluxes, while CH4 emissions were negligible. However, considerable N2O emissions occurred in both crop fields early in the season when crops were still establishing. N2O fluxes in both crops were small later in the season when vegetation was tall, despite high soil water contents and temperatures. Results clearly show a strong and highly dynamic microbial-plant competition for N driving N2O fluxes at the field scale. The total loss was 1.4 kg N2O-N ha-1 over 55 days for pea and 4.8 kg N2O-N ha-1 over 127 days for maize. EFs of N2O were 1.5 % (pea) and 4.4 % (maize) during the cropping seasons, clearly exceeding the IPCC Tier 1 EF for N2O. Thus, sustainable, climate-smart agriculture needs to consider crop phenology and better adapt N supply to crop N demand for growth, particularly during the early cropping season when competition for N between establishing crops and soil microorganisms modulates N2O losses.

Visualization and quantification of carbon "rusty sink" by rice root iron plaque: Mechanisms, functions, and global implications

Paddies contain 78% higher organic carbon (C) stocks than adjacent upland soils, and iron (Fe) plaque formation on rice roots is one of the mechanisms that traps C. The process sequence, extent and global relevance of this C stabilization mechanism under oxic/anoxic conditions remains unclear. We quantified and localized the contribution of Fe plaque to organic matter stabilization in a microoxic area (rice rhizosphere) and evaluated roles of this C trap for global C sequestration in paddy soils. Visualization and localization of pH by imaging with planar optodes, enzyme activities by zymography, and root exudation by ¹⁴ C imaging, as well as upscale modeling enabled linkage of three groups of rhizosphere processes that are responsible for C stabilization from the micro- (root) to the macro- (ecosystem) levels. The ¹⁴ C activity in soil (reflecting stabilization of rhizodeposits) with Fe²⁺ addition was 1.4-1.5 times higher than that in the control and phosphate addition soils. Perfect co-localization of the hotspots of β-glucosidase activity (by zymography) with root exudation (¹⁴ C) showed that labile C and high enzyme activities were localized within Fe plaques. Fe²⁺ addition to soil and its microbial oxidation to Fe³⁺ by radial oxygen release from rice roots increased Fe plaque (Fe³⁺ ) formation by 1.7-2.5 times. The C amounts trapped by Fe plaque increased by 1.1 times after Fe²⁺ addition. Therefore, Fe plaque formed from amorphous and complex Fe (oxyhydr)oxides on the root surface act as a "rusty sink" for organic matter. Considering the area of coverage of paddy soils globally, upscaling by model revealed the radial oxygen loss from roots and bacterial Fe oxidation may trap up to 130 Mg C in Fe plaques per rice season. This represents an important annual surplus of new and stable C to the existing C pool under long-term rice cropping.

Resistance and resilience of soil bacterial community to zero-valent iron disposal of lindane contamination

Zero-valent iron (ZVI, Fe⁰) enables chemical reduction of environmental pollutants coupled with reactivity loss due to surface oxidation. During ZVI treatment process, however, microbial community stability in terms of resistance and resilience remains largely unclear. Here, we monitored bacterial community succession over a 4 weeks period in soil microcosms with or without 2% (w/w) Fe⁰ amendment. To simulate soil pollution, 100 μg g^-1 chlorinated pesticide lindane (γ-hexachlorocyclohexane) was added to the microcosms as a model contaminant. In addition to microbial activity as measured by soil organic carbon mineralization, bacterial abundance, diversity and composition were determined using qPCR and high-throughput sequencing of 16 S rRNA genes. Co-occurrence analysis was performed to reveal the interaction patterns within the bacterial communities. The results indicated that ZVI caused near-complete transformation of lindane, while in the microcosms without Fe⁰ amendment the pesticide was recalcitrant. ZVI strongly inhibited CO₂-efflux at the early stage of incubation, but the bacterial community appeared to be less sensitive to Fe⁰ amendment. The ratios of negative to positive correlations between network nodes suggested that Fe⁰ had marginal influence on community stability compared to the lindane treatments, which destabilized the bacterial community. Community succession occurred in the presence of ZVI, as exemplified by a dominancy transition from anaerobic to aerobic taxa. Yet, ZVI alleviated the stress of lindane on soil bacteria by improving community structure and increasing network complexity. Taken together, these findings demonstrate the stability of soil bacterial community under Fe⁰ stress, which might be conducive to functional recovery of soil microorganisms following ZVI remediation.

Soil Fungal Composition Drives Ecosystem Multifunctionality after Long-Term Field Nitrogen and Phosphorus Addition in Alpine Meadows on the Tibetan Plateau

An ecosystem can provide multiple functions and services at the same time, i.e., ecosystem multifunctionality (EMF). Above- and belowground biodiversity and abiotic factors have different effects on EMF. Human activities increase atmospheric nitrogen (N) and phosphorus (P) deposition, but the mechanism of how atmospheric N and P deposition affect EMF in alpine meadows on the Tibetan Plateau is still unclear. Here, we measured eleven ecosystem parameters to quantify EMF by averaging method and explored the impact of plant and microbial species diversity and abiotic factors on EMF after long-term field N and P addition in alpine meadows on the Tibetan Plateau. Results showed that N addition reduced EMF by 15%, NP increased EMF by 20%, and there was no change due to P addition. N and P addition reduced pH, relative light conditions (RLC), and plant species richness and modified plant and fungal community composition. Structural equation model (SEM) analysis confirmed that fungal community composition was an important and positive driver on EMF. These results provided an understanding of how N and P addition affect EMF directly and indirectly through biotic and abiotic pathways, which was important for predicting the response of EMF to atmospheric N and P deposition in the future. Furthermore, the findings suggested that soil fungal composition was more important driving factors than abiotic factors in the response of EMF to N and P addition and the importance of the interactions between plant and soil microbial species diversity in supporting greater EMF.

Keystone microbial taxa drive the accelerated decompositions of cellulose and lignin by long-term resource enrichments

Lignin and cellulose are the most important component of crop straw entering arable soil. The decomposition of lignin and cellulose are related to carbon sequestration and soil fertility. The keystone microbes decomposing lignin and cellulose in cropland and their impact on agricultural management, however, remains largely unclear. In this study, we traced the carbon (C) from highly enriched ¹³C-labeled (atom% ¹³C = 99 %) lignin and cellulose to functional keystone microbes in soils of a 26-year fertilization field experiment with stable isotope probing (SIP). ¹³C-cellulose and ¹³C-lignin decomposition were significantly accelerated with the long-term application of fertilization, especially with the combination of organic and chemical fertilization (NPKM). The ¹³C was mainly assimilated by bacteria Acidobacteria (i.e. GP1, GP3, GP6), Proteobacteria (i.e. unidentified gamaproteobactiera, Bradyrhizobium), and fungi Ascomycota (i.e. Talaromyces and Fusarium, etc.). The keystone bacteria taxa decomposing cellulose and lignin were large overlapped, but substantially shaped by fertilization. For instance, GP3 was the dominant bacterium that decomposed both cellulose and lignin in no fertilizer control (CK), while GP1 and GP6 were the ones in chemical fertilization (NPK) and NPKM, respectively. The decomposition rates of cellulose in different fertilizations were majorly predicted by soil total phosphorus (TP), functional fungi abundance, total nitrogen (TN), whereas functional bacterial and fungal abundance, TP, and community structure of functional fungi manipulated the decomposing rate of lignin. Together, we demonstrate that keystone functional microbes decomposing cellulose and lignin were largely concurring and significantly altered by long-term resources enrichment, which drives the similar patterns of decomposition rates of these two substrates along the resource enrichment gradient.

Modelling the Rhizosphere Priming Effect in Combination with Soil Food Webs to Quantify Interaction between Living Plant, Soil Biota and Soil Organic Matter

A model of rhizosphere priming effect under impact of root exudate input into rhizosphere soil was developed as an important process of the plant-soil interaction. The model was based on the concept of nitrogen (N) mining, compensating for the N scarcity in exudates for microbial growth by accelerating SOM mineralisation. In the model, N deficiency for microbial growth is covered ("mined") by the increased SOM mineralisation depending on the C:N ratio of the soil and exudates. The new aspect in the model is a food web procedure, which calculates soil fauna feeding on microorganisms, the return of faunal by-products to SOM and mineral N production for root uptake. The model verification demonstrated similar magnitude of the priming effect in simulations as in the published experimental data. Model testing revealed high sensitivity of the simulation results to N content in exudates. Simulated CO₂ emission from the priming can reach 10-40% of CO₂ emission from the whole Ah horizon of boreal forest soil depending on root exudation rates. This modeling approach with including food web activity allows quantifying wider aspects of the priming effect functioning including ecologically important available N production.

Optimization of lignocellulolytic bacterial inoculum and substrate mix for lignocellulose degradation and product quality on co-composting of green waste with food waste

The present study evaluates the effect of the mixing ratio of substrates and inoculation with lignocellulolytic bacteria on green waste (GW) and food waste (FW) co-composting. A Box-Behnken design was used to simultaneously optimize the lignocellulose degradation (%LD) and end-product quality. The best operational conditions were 4.85*10⁵ CFU g^-1 of Bacillus sp. F3X3 and 1.44*10⁶ CFU g^-1 of Paenibacillus sp. F1A5 with a substrate mixture containing 50% GW, 32.5% unprocessed FW, 2.5% processed FW, 13% sawdust, and 2% phosphate rock; with a C/N ratio of 27. Under these conditions, the %LD was 33% and the end-product has pH 8.3, TOC 22,4%, TN 1,7%, and a germination index of 103%. Therefore, the product complies with quality standards for organic fertilizers. The results of this study allow the identification of appropriate strategies to optimize GW composting, increasing the degradation of lignocellulose and improving the end-product quality.

A precision compost strategy aligning composts and application methods with target crops and growth environments can increase global food production

Compost represents an important input for sustainable agriculture, but the use of diverse compost types causes uncertain outcomes. Here we performed a global meta-analysis with over 2,000 observations to determine whether a precision compost strategy (PCS) that aligns suitable composts and application methods with target crops and growth environments can advance sustainable food production. Eleven key predictors of compost (carbon-to-nutrient ratios, pH and salt content electric conductivity), management (nitrogen N supply) and biophysical settings (crop type, soil texture, soil organic carbon, pH, temperature and rainfall) determined 80% of the effect on crop yield, soil organic carbon and nitrous oxide emissions. The benefits of a PCS are more pronounced in drier and warmer climates and soils with acidic pH and sandy or clay texture, achieving up to 40% higher crop yield than conventional practices. Using a data-driven approach, we estimate that a global PCS can increase the production of major cereal crops by 96.3 Tg annually, which is 4% of current production. A global PCS has the technological potential to restore 19.5 Pg carbon in cropland topsoil (0-20 cm), equivalent to 26.5% of current topsoil soil organic carbon stocks. Together, this points to a central role of PCS in current and emerging agriculture.

Microbiogeochemical Traits to Identify Nitrogen Hotspots in Permafrost Regions

Permafrost-affected tundra soils are large carbon (C) and nitrogen (N) reservoirs. However, N is largely bound in soil organic matter (SOM), and ecosystems generally have low N availability. Therefore, microbial induced N-cycling processes and N losses were considered negligible. Recent studies show that microbial N processing rates, inorganic N availability, and lateral N losses from thawing permafrost increase when vegetation cover is disturbed, resulting in reduced N uptake or increased N input from thawing permafrost. In this review, we describe currently known N hotspots, particularly bare patches in permafrost peatland or permafrost soils affected by thermokarst, and their microbiogeochemical characteristics, and present evidence for previously unrecorded N hotspots in the tundra. We summarize the current understanding of microbial N cycling processes that promote the release of the potent greenhouse gas (GHG) nitrous oxide (N2O) and the translocation of inorganic N from terrestrial into aquatic ecosystems. We suggest that certain soil characteristics and microbial traits can be used as indicators of N availability and N losses. Identifying N hotspots in permafrost soils is key to assessing the potential for N release from permafrost-affected soils under global warming, as well as the impact of increased N availability on emissions of carbon-containing GHGs.

Soil microbial communities response to different fertilization regimes in young Catalpa bungei plantation

Fertilization is a fundamental aspect of global forest management that enhances forest productivity and drastically affects soil microbial communities. However, few studies have investigated the differences and similarities in the responses of below-ground microbial communities to different fertilization schemes. The effects of fertilization regimes on the composition and diversity of soil fungal and bacterial communities were investigated in a young Catalpa bungei plantation in Shandong Province, Eastern China. Soil microbial communities were assessed undergoing three types of fertilization: (i) no fertilization (CK), (ii) hole fertilization (HF), and (iii) the integration of water and fertilizer (WF). We further analyzed the effects of soil depth (i.e., 0–20 and 20–40 cm) on the structure of soil microbial communities. Our results indicated that the diversity of bacteria (e.g., Chao1 and Shannon indices) reduced undergoing fertilization, and WF had a higher negative impact on bacterial diversity than HF. A lower bacterial diversity was observed in the subsoil compared to the topsoil. In contrast to bacterial diversity, fungal diversity had a slightly increasing trend in the fertilized environments. The primary bacterial function was metabolism, which was independent of fertilization or soil depth. Among fungal functional guilds, symbiotic soil fungi decreased obviously in the fertilized stand, whereas saprotrophic fungi increased slowly. According to the structural equation models (SEM), the diversity and composition of bacterial and fungal communities were jointly regulated by soil nutrients (including N and P contents) directly affected by fertilization and soil layer. These findings could be used to develop management practices in temperate forests and help sustain soil microbial diversity to maintain long-term ecosystem function and services.

Does the Element Availability Change in Soils Exposed to Bioplastics and Plastics for Six Months?

Plastic sheets are widely used in farming soil to improve the productivity of cultures. Due to their absorption capacity, plastic sheets can alter element and metal content in soils, and in turn affect soil properties. The use of biodegradable films is an attractive eco-sustainable alternative approach to overcome the environmental pollution problems due to the use of plastic films but their impacts on soil are scarcely studied. The aim of the research was to evaluate the impact of conventional plastic and bioplastic sheets on total and available concentrations of elements (Al, Ca, Cu, Fe, K, Mg, Mn, Na, Ni, Pb, and Zn) in soils. The research was performed in mesocosm trials, filled with soil covered by conventional plastic and bioplastic sheets. After six months of exposure, soils were characterized for pH, water content, concentrations of organic and total carbon and total nitrogen, and total and available Al, Ca, Cu, Fe, K, Mg, Mn, Na, Ni, Pb, and Zn element concentrations. The results highlighted that soils covered by bioplastic sheets showed higher total and available concentrations of elements and higher contamination factors, suggesting that bioplastic sheets represented a source of metals or a less-effective sink to these background metals in soils, compared to conventional plastic ones.

Spatial heterogeneity of soil carbon exchanges and their drivers in a boreal forest

Boreal forests have a large impact on the global greenhouse gas balance and their soils constitute an important carbon (C) reservoir. Mature boreal forests are typically a net CO₂ sink, but there are also examples of boreal forests that are persistent CO₂ sources. The reasons remain often unknown, presumably due to a lack of understanding of how biotic and abiotic drivers interact to determine the microbial respiration of soil organic matter (SOM). This study aimed at identifying the main drivers of microbial SOM respiration and CO₂ and CH₄ soil chamber-fluxes within dry and wet sampling areas at the mature boreal forest of Norunda, Sweden, a persistent net CO₂ source. The spatial heterogeneity of the drivers was assessed with a geostatistical approach combined with stepwise multiple regression. We found that heterotrophic soil respiration increased with SOM content and nitrogen (N) availability, while the SOM reactivity, i.e., SOM specific respiration, was determined by soil moisture and N availability. The latter suggests that microbial activity was N rather than C limited and that microbial N mining might be driving old-SOM decomposition, which was observed through a positive correlation between soil respiration and its δ¹³C values. SOM specific heterotrophic respiration was lower in wet than in dry areas, while no such dependencies were found for chamber-based soil CO₂ fluxes, implying that oxygen depletion resulted in lower SOM reactivity. The chamber-based soil CH₄ flux differed significantly between the wet and dry areas. In the wet area, we observed net CH₄ emission that was positively related to soil moisture and NH₄⁺-N content. Taken together, our findings suggest that N availability has a strong regulatory effect on soil CO₂ and CH₄ emissions at Norunda, and that microbial decomposition of old-SOM to release bioavailable N might be partly responsible for the net CO₂ emission at the site.

Soil Moisture Affects the Rapid Response of Microbes to Labile Organic C Addition

Pulsed inputs of labile organic carbon (LOC) are common in soils and significantly affect carbon cycling. However, it remains unclear how soil moisture content affects microbial responses to LOC inputs and the relative contributions of native soil organic matter (SOM) and LOC derived from CO2 emissions during this process. In this study, we aimed to elucidate how moisture content affects microbial response to LOC inputs and native SOM. Here, 13C-labeled glucose was added to soils under nine soil moisture treatments [ranging from 10 to 90% of the water holding capacity (WHC)], and the immediate utilization of LOC and native SOM by microbes was measured. We found that the response of soil microbes to LOC was rapid, and promoted native SOM decomposition. Soil moisture content influenced the microbial usage of LOC and native SOM. A soil water content of 60% WHC was the optimal threshold for changes in the proportion of LOC and native SOM utilized by the microbes. Specifically, we found that when the soil moisture content was below 60% WHC, the ratio between LOC and native SOM increased with increasing moisture content levels. It gradually decreased when the soil moisture content was above 60% WHC. Overall, these findings emphasize the important role of moisture and LOC inputs in soil C cycles.

Global pattern of soil priming effect intensity and its environmental drivers

The microbial priming effect - the decomposition of soil organic carbon (SOC) induced by plant inputs - has long been considered an important driver of SOC dynamics, yet we have limited understanding about the direction, intensitiy, and drivers of priming across ecosystem types and biomes. This gap hinders our ability to predict how shifts in litter inputs under global change can affect climate feedbacks. Here, we synthesized 18,919 observations of CO₂ effluxes in 802 soils across the globe to test the relative effects (i.e., log response ratio; RR) of litter additions on native SOC decomposition, and identified the dominant environmental drivers in natural ecosystems and agricultural lands. Globally, litter additions enhanced native SOC decomposition (RR = 0.35, 95% CI: 0.32 ~ 0.38), with greater priming effects occurring with decreasing latitude, and more in agricultural soils (RR = 0.43) than in uncultivated soils (RR = 0.28). In natural ecosystems, soil pH and microbial community composition (e.g., bacteria:fungi ratio) were the best predictors of priming, with greater effects occurring in acidic, bacterial-dominated, sandy soils. In contrast, substrate properties of plant litter and soils were the most important drivers of priming in agricultural systems, as soils with high C:N ratio and those receiving large inputs of low quality litter had the highest priming effects. Collectively, our results suggest that while different factors may control priming effects, the ubquitious nature of priming means that alterations of litter quality and quantity owing to global changes will likely have consequences for global C cycling and climate forcing.

Microbial community structure and functional genes drive soil priming effect following afforestation

Afforestation substantially modifies native soil organic carbon (SOC) decomposition via plant carbon inputs (the priming effect), and in turn, triggers vital biogeochemical processes that influence the regulation of soil carbon dynamics. Soil microbes are crucial in regulating the direction and magnitude of the priming effect. In the present study, we performed metagenomic sequencing and ¹³C-glucose labeling analyses of microbial communities and priming effects across a Robinia pseudoacacia afforestation chronosequence (14-, 20-, 30-, and 45-year-old stands) in the Loess Plateau in China, with adjacent farmland being selected as a control. Our results revealed that the cumulative priming effect across five sites along the afforestation chronosequence initially increased and approached a peak value in the 20-year-old stand, after which it declined. The priming effect was predominantly driven by the microbial community structure (i.e., the fungal-to-bacterial ratios and relative abundances of Proteobacteria and Actinobacteria), and stable C decomposition genes and C-degrading enzymes. Specifically, among the key functional genes correlated with priming effect, which were identified in orders Rhizobiales and Pseudonocardiales, considerably promoted SOC priming. Overall, our findings indicate that afforestation alters soil microbial community structure and function, particularly with respect to enhancing stable soil C decomposition genes, which may promote SOC priming. The findings of the present study could enhance our understanding of fresh C input-induced changes associated with C mineralization in the context of the revegetation of ecologically fragile areas.

Aging behavior of microplastics affected DOM in riparian sediments: From the characteristics to bioavailability

Riparian zone is a hub for microplastics (MPs), and MPs accumulation also changes the function of the riparian zone (e.g., carbon pool) to pose a great threat to river ecosystems. Although it is known that MPs can be aged for changing their characteristic after accumulating in riparian sediment, the effect of MP aging behavior on sediment dissolved organic matter (DOM) bioavailability and carbon emission has not been elucidated. In this study, effects of pristine and aged MPs on the DOM characteristics and components were investigated in sediment. The results showed that pristine MPs increased DOM humification and promoted the formation of larger molecular weight components, thereby reducing DOM bioavailability by approximately 16~23% and inducing negative priming effect. However, inhibition of MPs on DOM bioavailability and the priming effect decreased with aging behavior. Mathematical models revealed that the fulvic acid-like substance of sediment DOM was the driven factor in the influence of sediment carbon stability. Further microbial analysis found that higher carbohydrate metabolism promoted DOM humification, thereby reducing CO₂ emissions approximately by 19~26% after MPs accumulation. Thus, this study provided an integrated picture to understand the risk of MPs accumulation in sediment for a long term on terrestrial and aquatic ecosystems.

Plant diversity and soil properties regulate the microbial community of monsoon evergreen broad-leaved forest under different intensities of woodland use

A key aspect of global forest management, woodland use intensity (WUI) greatly affects the composition and diversity of soil microbial communities, thereby affecting multiple ecosystem functions and services. However, the effects of WUI on soil microbial community composition and enzymatic activities remains unclear. The effects of anthropomorphic alterations to a natural monsoon evergreen broad-leaved forest in terms of the composition and diversity of soil fungal and bacterial communities, was investigated at a site in Yunnan Province, Southwest China. Soil microbial communities were assessed under four levels of disturbance with increasing levels of WUI: (i) none, undisturbed forest (control), (ii) light, naturally-regenerated Pinus kesiya Royle ex Gordon forest, (iii) intermediate, shrub and grassland communities formed through grazing, and (iv) severe, continuously managed coffee (Coffea arabica L.) plantations. With increasing WUI, the diversity of soil fungal and bacterial communities increased, while similarities in community composition decreased for fungi but increased for bacteria. Among fungal functional guilds, ectomycorrhizal fungi decreased significantly with increasing WUI, whereas saprotrophic fungi (undefined, wood, and soil saprotrophs) increased significantly. The species richness of woody plants remarkably affected fungal functional guilds. Ectomycorrhizal fungi interacted in a synergistic manner with the fungal network structure. Significantly affecting microorganismal network structure, WUI increases led to more homogeneous networks with less integration within modules within the microbial community. The WUI strongly altered hub identity and module composition in the microbial community. According to structural equation models, WUI had direct positive effects on soil fungal community composition via its effects on plant species richness. The diversity of bacterial and fungal communities and composition of bacterial communities were jointly regulated by the indirect effects of plant species richness and soil nutrients (including enzyme activity). Deterministic processes largely determined the composition of soil fungal and bacterial communities. This study highlights the importance of maintaining the diversity of soil fungal and bacterial communities despite changes in woodland use to sustain ecosystem functions. These results can be used to develop management practices in subtropical forests and help sustain plant and soil microbial diversity at levels sufficient to maintain long-term ecosystem function and services.

Soil properties and microbial communities of spring maize filed in response to tillage with straw incorporation and nitrogen fertilization in northeast China

Soil enzymes and microorganisms are both important to maintaining good soil quality and are also sensitive to changes in agricultural management. The individual effects of tillage, straw incorporation and nitrogen (N) fertilization on soil enzymes and microflora have been widely acknowledged, but their interactive effect remains largely unknown. In a 5-year in-situ field study, effects of rotary (RTS) and plow tillage (PTS) practices with straw incorporation combined with three N fertilization levels (0 kg N ha-1, CK; 187 kg N ha-1, MN; 337 kg N ha-1, HN) on soil enzyme activities and microbial communities were assessed. Our results showed that the activities of β-glucosidase (βG), N-acetylglucosaminidase (NAG) and acid phosphatase (APH) were improved in RTS+MN. The bacterial and fungal abundances in RTS+MN and RTS+HN were 1.27-27.51 times higher than those in other treatment groups. However, the bacterial and fungal alpha diversities were enhanced in PTS+MN and PTS+CK compared with other treatments, respectively. Proteobacteria and Basidiomycota were the predominant phylum for the respective bacterial and fungal communities. Moreover, significant interactive effects were found in the fungal community composition, but only minor impacts were observed on the bacterial community composition. Soil water content and penetration resistance contributed more to the soil enzyme activity and microbial community than other soil properties investigated, whereas there was a significant positive correlation between βG and APH activities and microbial abundance. These findings can provide new insights into tillage with straw incorporation and N fertilization on maize cultivation in northeast China.

Microbial Involvement in the Bioremediation of Total Petroleum Hydrocarbon Polluted Soils: Challenges and Perspectives

Nowadays, soil contamination by total petroleum hydrocarbons is still one of the most widespread forms of contamination. Intervention technologies are consolidated; however, full-scale interventions turn out to be not sustainable. Sustainability is essential not only in terms of costs, but also in terms of restoration of the soil resilience. Bioremediation has the possibility to fill the gap of sustainability with proper knowledge. Bioremediation should be optimized by the exploitation of the recent “omic” approaches to the study of hydrocarburoclastic microbiomes. To reach the goal, an extensive and deep knowledge in the study of bacterial and fungal degradative pathways, their interactions within microbiomes and of microbiomes with the soil matrix has to be gained. “Omic” approaches permits to study both the culturable and the unculturable soil microbial communities active in degradation processes, offering the instruments to identify the key organisms responsible for soil contaminant depletion and restoration of soil resilience. Tools for the investigation of both microbial communities, their degradation pathways and their interaction, will be discussed, describing the dedicated genomic and metagenomic approaches, as well as the interpretative tools of the deriving data, that are exploitable for both optimizing bio-based approaches for the treatment of total petroleum hydrocarbon contaminated soils and for the correct scaling up of the technologies at the industrial scale.

Nitrogen availability mediates the priming effect of soil organic matter by preferentially altering the straw carbon-assimilating microbial community

Straw incorporation into soil increases carbon (C) sequestration but can induce priming effects (PE), the enhanced breakdown of soil organic matter. The direction and magnitude of PE and the consequences for the C balance induced by straw addition depend on nitrogen (N) availability and soil management history. Using ¹³C-labeled maize straw, we conducted a 56-day incubation to determine the dynamics of PE and the underlying microbial mechanisms after straw and/or mineral N addition to three soils with contrasting cultivation and fertilization histories, i) unfertilized soil (Unfertilized), ii) 8 years farmyard manure amended soil (Manured), and iii) abandoned cropland soil (Abandoned). ¹³C-PLFAs (phospholipid fatty acids) were analyzed to identify microbial groups utilizing straw and to explore their contribution to the PE. Straw addition increased microbial biomass (MBC), activities of enzymes related to the C and N cycles, and changed microbial community composition. SOC decomposition was enhanced by microbes activated by straw addition, leading to a positive cumulative PE ranging from 494 to 789 μg C g^-1 soil. The magnitude of positive PE and straw decomposition in the manured soil was higher than that in the unfertilized and abandoned soils due to larger MBC and higher enzyme activities, resulting in a lower net SOC gain. Compared with straw only, the combination of straw addition with N fertilizer did not influence MBC, but increased positive PE (average increase of 18.1%) and straw decomposition (17.1%), further limiting SOC gain. ¹³C-labeled fungi: bacteria ratios and Gram-positive (G+): negative (G-) bacteria ratios increased with the increasing PE after N fertilization, but soil-derived (un-labeled) PLFAs remained stable. Random forest analysis further showed that straw C-assimilating microbial attributes are important predictors in driving the greater PE after N addition. Our study highlights the importance of straw C-assimilating fungi and G+ bacteria in mediating N-induced PE in arable soils.