Improved understanding of hyperaccumulation yields commercial phytoextraction and phytomining technologies

Convergent patterns of tissue-level distribution of elements in different tropical woody nickel hyperaccumulator species from Borneo Island

The Malaysian state of Sabah on the Island of Borneo has recently emerged as a global hotspot of nickel hyperaccumulator plants. This study focuses on the tissue-level distribution of nickel and other physiologically relevant elements in hyperaccumulator plants with distinct phylogenetical affinities. The roots, old stems, young stems and leaves of Flacourtia kinabaluensis (Salicaceae), Actephila alanbakeri (Phyllanthaceae), Psychotria sarmentosa (Rubiaceae) and young stems and leaves of Glochidion brunneum (Phyllanthaceae) were studied using nuclear microprobe (micro-PIXE and micro-BS) analysis. The tissue-level distribution of nickel found in these species has the same overall pattern as in most other hyperaccumulator plants studied previously, with substantial enrichment in the epidermal cells and in the phloem. This study also revealed enrichment of potassium in the spongy and palisade mesophyll of the studied species. Calcium, chlorine, manganese and cobalt were found to be enriched in the phloem and also concentrated in the epidermis and cortex of the studied species. Although hyperaccumulation ostensibly evolved numerous times independently, the basic mechanisms inferred from tissue elemental localization are convergent in these tropical woody species from Borneo Island.

Comprehensive review of the basic chemical behaviours, sources, processes, and endpoints of trace element contamination in paddy soil-rice systems in rice-growing countries

Rice is the leading staple food for more than half of the world's population, and approximately 160 million hectares of agricultural area worldwide are under rice cultivation. Therefore, it is essential to fulfil the global demand for rice while maintaining food safety. Rice acts as a sink for potentially toxic metals such as arsenic (As), selenium (Se), cadmium (Cd), lead (Pb), zinc (Zn), manganese (Mn), nickel (Ni), and chromium (Cr) in paddy soil-rice systems due to the natural and anthropogenic sources of these metals that have developed in the last few decades. This review summarizes the sources and basic chemical behaviours of these trace elements in the soil system and their contamination status, uptake, translocation, and accumulation mechanisms in paddy soil-rice systems in major rice-growing countries. Several human health threats are significantly associated with these toxic and potentially toxic metals not only due to their presence in the environment (i.e., the soil, water, and air) but also due to the uptake and translocation of these metals via different transporters. Elevated concentrations of these metals are toxic to plants, animals, and even humans that consume them regularly, and the uniform deposition of metals causes a severe risk of bioaccumulation. Furthermore, the contamination of rice in the global rice trade makes this a critical problem of worldwide concern. Therefore, the global consumption of contaminated rice causes severe human health effects that require rapid action. Finally, this review also summarizes the available management/remediation measures and future research directions for addressing this critical issue.

Growing food in polluted soils: A review of risks and opportunities associated with combined phytoremediation and food production (CPFP)

Innumerable private households and small-scale producers currently operate on polluted soils. Phytoremediation is one of the most cost-effective remediation options but as a stand-alone technology, it is often not lucrative enough to make it appealing for farmers, especially in economically vulnerable regions. Economic incentives are crucial for remediation projects to materialise and synergies can be obtained by integrating phytoremediation with other profitable activities including food production. This review aims to synthesise state-of-the-art scientific data to provide a general understanding of opportunities and risks for sustainable remediation of agricultural soil by the use of combined phytoremediation and food production (CPFP). The results show that strategies based on CPFP may be appropriate options for most pollutants in virtually all climatic or socioeconomic contexts but a number of challenges need to be surpassed. The challenges include remediation-technological issues such as undeveloped post-harvest technology and inadequate soil governance. The need for remediation solutions for polluted fields is increasingly urgent since many farmers currently operate on polluted land and the scarcity of soil resources as the human population continuously increases will inevitably force more farmers to cultivate in contaminated areas. We conclude that, although large scale CPFP has not yet reached technological maturity, appropriate combinations of soil types, plant species/cultivars, and agronomic practices together with thorough monitoring of the pollutants' pathways can potentially allow for safe food production on polluted soil that restricts the transfer of a number of pollutants to the food chain while the soil pool of pollutants is gradually reduced.

The limits of lead (Pb) phytoextraction and possibilities of phytostabilization in contaminated soil: a critical review

This review article focuses on lead (Pb), one of the most ubiquitous and harmful toxicants found in soil. Our objective is to address misconceptions regarding the ability of plants to uptake Pb through their roots and translocate it to above-ground tissues, and their ability to act as hyperaccumulators and thereby phytoextract Pb. In accordance with a number of cited definitions, we suggest that species capable of Pb phytoextraction can be rated with the following three criteria: (1) root uptake above a nominal threshold of 1,000 mg Pb/kg, (2) bioconcentration factor (BCF or shoot/soil concentration) >1, and (3) translocation factor (TF or shoot/root concentration) > 1. We review the literature in the updated USDA Phytoremediation Database and conclude that without amendments: no plant has met all three criteria; no plant has been confirmed as a Pb hyperaccumulator. Our analysis suggests that Pb phytoextraction is not a viable remediation option. Pb phytostabilization, however, may be an effective remediation tool in a variety of settings. Planting some of the many species capable of tolerating soil Pb exposure and sequestering it in or around the root zone will limit Pb movement into other ecosystems, prevent resuspended dusts, and mitigate Pb exposure.

Visualizing Hotspots and Future Trends in Phytomining Research Through Scientometrics

Phytomining has attracted widespread attention as a technique for harvesting “bio-ore.” This technology has potential applications in the metal and minerals industry for low-grade metal and mineral mining as well as metal recycling from polluted soil. The hotspots and future trends of this technology deserve in-depth exploration. This paper presents a systematic review of the phytomining research area through the scientometrics method based on the citation data collected from the Web of Science Core Collection (WoSCC). The results show that the earliest phytomining-related research was published in 1997. Between 1997 and 2019, 232 publications were published in 109 journals. Plant and Soil, the International Journal of Phytoremediation, and the Journal of Geochemical Exploration were the top three most prolific journals and accounted for 18.1% of these publications. Guillaume Echevarria, J.L. Morel, and Antony Van der Ent were the top three most prolific authors, and their work accounted for 40.1% of these publications. The cluster results of document co-citation analysis revealed that the hotspots in phytomining research area mainly includes “nickel accumulation,” “heavy metal uptake,” “mining site,” “heavy metal,” “hyperaccumulation yield,” “growth effect,” and “alternative method.” Keyword burst detection results find that the hot topics have changed over time from “phytomining” to “agromining”; from “contaminated soil” to “serpentine soil”; and from “mechanism” to “phytomining process” and “commercial phytoextraction.” This study describes the intellectual landscape of research and provides future research directions for phytomining research so that researchers can identify future research topics and partners.

Citric acid-assisted accumulation of Ni and other metals by Odontarrhena muralis: Implications for phytoextraction and metal foliar distribution assessed by μ-SXRF

Odontarrhena muralis is one of the most promissing plant species for Ni phytomining, and soil amendments can further increase its Ni phytoextraction ability. Here we investigated whether Ni phytomining/phytoremediation using this Ni hyperaccumulator can benefit from applying citric acid to a serpentine soil that is naturally enriched in Ni (>1000 mg kg^-1). Synchrotron micro X-ray fluorescence (μ-SXRF) was used to image Ni and other metal distributions in whole fresh leaves of O. muralis. Leaf Ni accumulation in plants grown on citric acid-amended soil increased up to 55% while Co, Cr, Fe, Mn, and Zn concentrations were 4-, 14-, 6-, 7- and 1.3-fold higher than the control treatment. O. muralis presented high bioconcentration factors (leaf to soil concentration ratio) to Ni and Zn whereas Cr was seemingly excluded from uptake. The μ-SXRF images showed a uniform distribution of Ni, preferential localization of Co in the leaf tip, and clear concentration of Mn in the base of trichomes. The citric acid treatments strongly increased the Co fluoerescence intensity in the leaf tip and altered the spatial distribution of Mn across the leaf, but there was no difference in Ni fluorescence counts between the trichome-base region and the bulk leaf. Our data from a serpentine soil suggests that citrate treatment enhances Ni uptake, but Co is excreted from leaves even in low leaf concentrations, which can make Co phytoming using O. muralis unfeasible in natural serpentine soils.

Plant diversity, net primary productivity and soil nutrient contents of a humid subtropical grassland remained low even after 50 years of post-disturbance recovery from coal mining

Assessment of environmental impact of coal mining on natural ecosystems and monitoring of subsequent ecological restoration process of mined areas are essential for devising reclamation strategies for mining-affected landscapes. The present study was designed to assess the post-disturbance recovery of vegetation, primary productivity and soil nutrient build-up of a humid subtropical grassland ecosystem following coal mining activities. Two replicate sites each for the undisturbed grasslands (UG), mining-affected (MG) and recovering grasslands of 15 (RG15) and 50 (RG50) years old were selected. There was a distinct pattern of species colonization and replacement during different years of recovery. Species richness, biomass, net primary productivity and soil pH declined following disturbance but increased with recovery age. Soil organic C and total N were high in the MG sites but significantly declined with recovery age. Soil total P and exchangeable K and Mg were low even at the 50th year of recovery indicating extremely slow recovery rate of these nutrients. Considering the extremely slow natural recovery of vegetation and soil nutrients, it is recommended to carry out artificial or aided vegetation restoration using native grass species tolerant to disturbance. Six species which are well-adapted to the mining environment and were present in both undisturbed and mining-affected recovering grasslands, viz. Arundinella khaseana, Cyanotis vaga, Eragrostis nigra, Polygonum bistorta and Fimbristylis hookeriana, are recommended for aided vegetation regeneration.

Nickel phytomining from industrial wastes: Growing nickel hyperaccumulator plants on galvanic sludges

Nickel (Ni) is used in numerous industrial processes, with large amounts of Ni-rich industrial wastes produced, which are largely sent to landfill. Nickel recovery from waste materials that would otherwise be disposed is of particular interest. Nickel phytomining represents a new technology in which hyperaccumulator plants are cultivated on Ni-rich substrates for commercial metal recovery. The aim of this study was to investigate the possibility of Ni transfer from industrial waste into plant biomass, to support recovery processes from bio-ores. Different industrial galvanic sludges (containing 85-150 g kg^-1 Ni) were converted into artificial substrates (i.e. technosols) and the Ni hyperaccumulator Odontarrhena chalcidica (formerly Alyssum murale) was cultivated on these Ni-rich matrices. A greenhouse pot experiment was conducted for three months including an ultramafic soil control and testing fertilized (NPK) and unfertilized replicates. The results showed that fertilization was effective in improving plant biomass for all the substrates and that O. chalcidica was capable of viably growing on technosols, producing a comparable biomass to O. chalcidica on the control (ultramafic soil). On all technosols, O. chalcidica achieved Ni shoot concentrations of more than >1000 mg Ni kg ^-1 and maximum Ni uptake was obtained from one of the technosols (26.8 g kg ^-1 Ni, unfertilized; 20.2 g kg ^-1 Ni, fertilized). Nickel accumulation from three of the technosols resulted to be comparable with the control ultramafic soil. This study demonstrated the feasibility of transferring Ni from toxic waste into the biomass of Odontarrhena chalcidica and that phytomining from galvanic sludge-derived technosols can provide similar Ni yields as from natural ultramafic soils.

Biomolecular approaches to understanding metal tolerance and hyperaccumulation in plants

Trace metal elements are essential for plant growth but become toxic at high concentrations, while some non-essential elements, such as Cd and As, show toxicity even in traces.

Quantifying soil contamination and identifying interventions to limit health risks

Numerous toxicants contaminate soil and negatively affect the environments that children explore. Accurately measuring these toxicants and characterizing the level of soil contamination may be difficult and must include measurements of both the environmental concentrations and the exposure responses of human populations. This article reviews the current methods and technologies available for quantifying soil contamination. Several intervention strategies exist for limiting human exposure to contaminated soils and the strengths and weaknesses of these methods are discussed. Lastly, current policies on soil contamination and the importance of protecting vulnerable populations by developing means to improve health conditions for children are reviewed.

Phytoremediation of Heavy Metal-Contaminated Sites: Eco-environmental Concerns, Field Studies, Sustainability Issues, and Future Prospects

Environmental contamination due to heavy metals (HMs) is of serious ecotoxicological concern worldwide because of their increasing use at industries. Due to non-biodegradable and persistent nature, HMs cause serious soil/water pollution and severe health hazards in living beings upon exposure. HMs can be genotoxic, carcinogenic, mutagenic, and teratogenic in nature even at low concentration. They may also act as endocrine disruptors and induce developmental as well as neurological disorders, and thus, their removal from our natural environment is crucial for the rehabilitation of contaminated sites. To cope with HM pollution, phytoremediation has emerged as a low-cost and eco-sustainable solution to conventional physicochemical cleanup methods that require high capital investment and labor alter soil properties and disturb soil microflora. Phytoremediation is a green technology wherein plants and associated microbes are used to remediate HM-contaminated sites to safeguard the environment and protect public health. Hence, in view of the above, the present paper aims to examine the feasibility of phytoremediation as a sustainable remediation technology for the management of metal-contaminated sites. Therefore, this paper provides an in-depth review on both the conventional and novel phytoremediation approaches; evaluates their efficacy to remove toxic metals from our natural environment; explores current scientific progresses, field experiences, and sustainability issues; and revises world over trends in phytoremediation research for its wider recognition and public acceptance as a sustainable remediation technology for the management of contaminated sites in the twenty-first century.

Uptake, translocation and accumulation of nickel and cobalt in Berkheya coddii, a ‘metal crop’ from South Africa

Hyperaccumulator plants have the ability to efficiently concentrate metallic elements, e.g. nickel, from low-grade sources into their living biomass.

Elevated Expression of Vacuolar Nickel Transporter Gene IREG2 Is Associated With Reduced Root-to-Shoot Nickel Translocation in Noccaea japonica

A number of metal hyperaccumulator plants, including nickel (Ni) hyperaccumulators, have been identified in the genus Noccaea. The ability to accumulate Ni in shoots varies widely among species and ecotypes in this genus; however, little is known about the molecular mechanisms underlying this intra- and inter-specific variation. Here, in hydroponic culture, we compared Ni accumulation patterns between Noccaea japonica, which originated in Ni-enriched serpentine soils in Mt. Yubari (Hokkaido, Japan), and Noccaea caerulescens ecotype Ganges, which originated in zinc/lead-mine soils in Southern France. Both Noccaea species showed extremely high Ni tolerance compared with that of the non-accumulator Arabidopsis thaliana. But, following treatment with 200 μM Ni, N. caerulescens showed leaf chlorosis, whereas N. japonica did not show any stress symptoms. Shoot Ni concentration was higher in N. caerulescens than in N. japonica; this difference was due to higher efficiency of root-to-shoot Ni translocation in N. caerulescens than N. japonica. It is known that the vacuole Ni transporter IREG2 suppresses Ni translocation from roots to shoots by sequestering Ni in the root vacuoles. The expression level of the IREG2 gene in the roots of N. japonica was 10-fold that in the roots of N. caerulescens. Moreover, the copy number of IREG2 per genome was higher in N. japonica than in N. caerulescens, suggesting that IREG2 expression is elevated by gene multiplication in N. japonica. The heterologous expression of IREG2 of N. japonica and N. caerulescens in yeast and A. thaliana confirmed that both IREG2 genes encode functional vacuole Ni transporters. Taking these results together, we hypothesize that the elevation of IREG2 expression by gene multiplication causes the lower root-to-shoot Ni translocation in N. japonica.

Changes in Proteome and Protein Phosphorylation Reveal the Protective Roles of Exogenous Nitrogen in Alleviating Cadmium Toxicity in Poplar Plants

Phytoremediation soil polluted by cadmium has drawn worldwide attention. However, how to improve the efficiency of plant remediation of cadmium contaminated soil remains unknown. Previous studies showed that nitrogen (N) significantly enhances cadmium uptake and accumulation in poplar plants. In order to explore the important role of nitrogen in plants’ responses to cadmium stress, this study investigates the poplar proteome and phosphoproteome difference between Cd stress and Cd + N treatment. In total, 6573 proteins were identified, and 5838 of them were quantified. With a fold-change threshold of > 1.3, and a p-value < 0.05, 375 and 108 proteins were up- and down-regulated by Cd stress when compared to the control, respectively. Compared to the Cd stress group, 42 and 89 proteins were up- and down-regulated by Cd + N treatment, respectively. Moreover, 522 and 127 proteins were up- and down-regulated by Cd + N treatment compared to the CK group. In addition, 1471 phosphosites in 721 proteins were identified. Based on a fold-change threshold of > 1.2, and a p-value < 0.05, the Cd stress up-regulated eight proteins containing eight phosphosites, and down-regulated 58 proteins containing 69 phosphosites, whereas N + Cd treatment up-regulated 86 proteins containing 95 phosphosites, and down-regulated 17 proteins containing 17 phosphosites, when compared to Cd stress alone. N + Cd treatment up-regulated 60 proteins containing 74 phosphosites and down-regulated 37 proteins containing 42 phosphosites, when compared to the control. Several putative responses to stress proteins, as well as transcriptional and translational regulation factors, were up-regulated by the addition of exogenous nitrogen following Cd stress. Especially, heat shock protein 70 (HSP70), 14-3-3 protein, peroxidase (POD), zinc finger protein (ZFP), ABC transporter protein, eukaryotic translation initiation factor (elF) and splicing factor 3 B subunit 1-like (SF3BI) were up-regulated by Cd + N treatment at both the proteome and the phosphoproteome levels. Combing the proteomic data and phosphoproteomics data, the mechanism by which exogenous nitrogen can alleviate cadmium toxicity in poplar plants was explained at the molecular level. The results of this study will establish the solid molecular foundation of the phytoremediation method to improve cadmium-contaminated soil.

Eco-restoration approach for mine spoil overburden dump through biotechnological route

The overburden dumps which are created during the process of mining are devoid of supportive and nutritive capacity for biomass development. Restoration of these overburden dumps requires the establishment of a self-sustaining soil-plant system, for which a restoration strategy is needed to accelerate the natural processes of ecosystem development. For eco-restoration of a coal mine spoil dump, National Environmental Engineering Research Institute developed an ecofriendly multidisciplinary approach to restore the fertility of the mine spoil overburden dump. In this regard, an experiment was conducted to restore the fertility of the overburden dump in an area of 20 ha at Durgapur in India. To reclaim the dump, the IBA (integrated biotechnological approach) was used. The integrated biotechnological approach involves the utilization of industrial waste ETP sludge (effluent treatment plant sludge) to support the nutritive capacity for vegetation establishment, inoculation, and isolation of Azotobacter, Bradyrhizobium, and VAM (vesicular arbuscular mycorrhiza) spores of Gigaspora and Glomus species along with suitable indigenous trees of ecological and economic importance. The findings of the experimental study revealed that amendment of the mine spoil with organic amendment at 50 t/ha improved the nutrient, microbiological, and physicochemical properties of the coal mine spoil and reduced the toxicity of heavy metals due to increased organic carbon content of the organic amendment effluent treatment plant sludge. Thus, amendment of the effluent treatment plant sludge and biofertilizer application provided better supportive material for the growth of different plant species which resulted into momentous biomass (aboveground biomass and belowground biomass) production thereby improving the productivity and fertility of the mine spoil dump in a short span. Thus, using IBA, the ecology and biodiversity of the area was conserved. It also helped to maintain the aesthetic environment surrounding the mine site.

Rhizosphere response to nickel in a facultative hyperaccumulator

This study faces the characterization of the culturable microbiota of the facultative Ni-hyperaccumulator Alyssoides utriculata to obtain a collection of bacterial and fungal strains for potential applications in Ni phytoextraction. Rhizosphere soil samples and adjacent bare soil associated with A. utriculata from serpentine and non-serpentine sites were collected together with plant roots and shoots. Rhizobacteria and fungi were isolated and characterized genotypically and phenotypically. Plants and soils were analyzed for total element concentration using Inductively Coupled Plasma Mass Spectrometry (ICP-MS). Serpentine and non-serpentine sites differ in terms of elements concentration in soil, plant roots and shoots. Ni and Co are significantly higher on serpentine site, while Ca is more abundant in non-serpentine site. Bacteria and fungi were significantly more abundant in rhizosphere than in bare soil and were dominated by genera Arthrobacter, Bacillus and Streptomyces, Penicillium and Mucor. The genus Pseudomonas was only found in rhizospheric serpentine soils (<2% of total serpentine isolates) and with Streptomyces sp. showed highest Ni-tolerance up to 15 mM. The same occurred for Trichoderma strain, belonging to the harzianum group (<2% of the total microfungal count) and Penicillium ochrochloron (<10% of the total microfungal count, tolerance up to Ni 20 mM). Among serpentine bacterial isolates, 8 strains belonging to 5 genera showed at least one PGPR activity (1-Aminocyclopropane-1-Carboxylic Acid (ACC) deaminase activity, production of indole-3-acetic acid (IAA), siderophores and phosphate solubilizing capacity), especially genera Pantoea, Pseudomonas and Streptomyces. Those microorganisms might thus be promising candidates for employment in bioaugmentation trials.

Arsenic removal and biomass reduction of As-hyperaccumulator Pteris vittata: Coupling ethanol extraction with anaerobic digestion

Improper disposal of arsenic-rich biomass and the lack of efficient methods to treat it may cause contamination in the environment. We developed an efficient method for arsenic (As) removal and biomass reduction of As-rich biomass of the As-hyperaccumulator Pteris vittata by coupling ethanol extraction with anaerobic digestion. This study assessed As partitioning among the three phases (gas, liquid and solid) after anaerobic digestion of P. vittata biomass. Biomass with and without As was first extracted with ethanol. Ethanol extraction removed ~93% As, with remaining As concentration at 197 mg kg^-1. The extracted biomass was then digested at 35 °C under anaerobic conditions for 35 d. Arsenic in the digested biomass was reduced by 89%, with remaining As concentration at 60 mg kg^-1. In addition, anaerobic digestion reduced the biomass by 64-71% and decreased the volatile solids content from 94 to 15-18%. Methane production was 145 and 160 L_NCH₄/kgVS after 35 d for As-rich and control biomass, respectively. As a final step, As concentration in anaerobic digestate supernatant was reduced to 0.26 mg L^-1 by As-Mg precipitation. Overall, coupling ethanol extraction with anaerobic digestion decreased As concentration in P. vittata biomass from 2665 to 60 mg kg^-1, or by 98%. At this level (<100 mg As kg^-1), P. vittata biomass can be considered a safe material based on USEPA regulations. Effective As removal from P. vittata biomass prior to disposal improves the phytoremediation process and lowers biomass transport and landfill disposal costs.

X-Ray Fluorescence Ionomics of Herbarium Collections

Global herbaria are the greatest repositories of information on the plant kingdom. Discoveries of trace element hyperaccumulator plants have historically required time-consuming destructive chemical analysis of fragments from herbarium specimens, which severely constrains the collection of large datasets. Recent advances in handheld X-Ray Fluorescence spectroscopy (XRF) systems have enabled non-destructive analysis of plant samples and here we propose a new method, which we term “Herbarium XRF Ionomics”, to extract elemental data from herbarium specimens. We present two case studies from major tropical herbaria where Herbarium XRF Ionomics has led to the discovery of new hyperaccumulator plants and provided valuable insights into phylogenetic patterns of trace element hyperaccumulation. Herbarium XRF Ionomics is a new value proposition for continued funding and retention of herbarium specimens globally.

Community diversity and potential functions of rhizosphere-associated bacteria of nickel hyperaccumulators found in Albania

Ultramafic (i.e. serpentine) soils are widespread in the Balkans and particularly in Albania. They account for a large part of plant endemism in that region and host several hyperaccumulator species, which are characterized by leaf nickel concentrations frequently above 1%. This rich nickel hyperaccumulating flora could serve as candidate to be used in phytoextraction and agromining. Despite recent interest in metal hyperaccumulating plants and agromining, very few studies have investigated the bacterial diversity and the influence of environmental factors on microbial gene profiles in the rhizosphere of hyperaccumulator plants growing on ultramafic soils. Because rhizospheric bacteria could be crucial to the success of phytoremediation, we studied a total of 48 nickel-hyperaccumulating plants which were sampled from four species that are widespread in Albania: Noccaea ochroleuca, Odontarrhena smolikana, O. rigida and O. chalcidica. All samples were taken from the ultramafic regions of Librazhd and Pogradec in eastern Albania in October 2015. Our study shows that Proteobacteria, Actinobacteria and Acidobacteria dominated the soil bacterial communities. Of these three phyla, only Proteobacteria was relatively abundant. This study underlines the influence of soil Cation Exchange Capacity on the bacterial community's diversity and structure. Based on the predicted metagenomes, the genes belonging to amino acid, lipid and carbohydrate metabolisms were identified as major gene families. Our study sheds some light on our understanding of how bacterial communities are structured within and affect the rhizosphere of hyperaccumulator plants from ultramafic soils in Albania.

Can organic amendments replace chemical fertilizers in nickel agromining cropping systems in Albania?

In Albania, ultramafic outcrops cover 11% of the surface and have the potential to support nickel phytomining. In a large-scale in-situ experiment on an ultramafic Vertisols in Pojskë we are studying the influence of agronomical practices on Ni phytoextraction yield of Odontarrhena chalcidica (syn. Alyssum murale). Three cropping systems were compared in three plots in 2016-2017; POJ-1 Plot (0.3 ha) was established with plants that had germinated spontaneously without any treatments; POJ-2 plot (0.3 ha) was covered by plants that had germinated spontaneously and was treated with mineral fertilizer (N50P50K50 kg ha^-1); and POJ-3 Plot (400 m²) was divided in four sub plots, where O. chalcidica was planted at a density of 4 plants m^-2 on which, we neither applied fertilizer, nor NPK fertilizer (N65P65K65), pig (FPM; N260:P105:K260 + 15 kg ha^-1N, P, K) or chicken manure (FCHM; N260:P390:K260 +15 kg ha^-1 N, P, K. Irrigation and mechanical control of weeds was done on POJ-3. After 8 months, shoot Ni concentration, biomass, and Ni yields were higher in O. chalcidica treated with manure and the cost of biomass production was smaller. Nickel yield was more promising (145 kg ha^-1) than in previous field trials. This study highlights that, using manure, the Ni yield increases Ni phytomining net values, thus agromining can become an economically justifiable agricultural cropping system.

Influence of new agromining cropping systems on soil bacterial diversity and the physico-chemical characteristics of an ultramafic soil

Most of the research dedicated to agromining has focused on cultivating a single hyperaccumulator plant, although plant diversity has been shown to positively modify soil characteristics. Hence, we compared the effect of cropping a nickel-hyperaccumulator Alyssum murale with a legume (Vicia sativa) to A. murale's mono-culture, on the bacterial diversity and physico-chemical characteristics of an ultramafic soil. A pot experiment with 5 replicates was conducted in controlled conditions for 11 months. The treatments studied were: co-cropping and rotation vs. mineral fertilization controls and bare soil. The introduction of legumes induced a clearly positive effect on the soil's microbial biomass carbon and nitrogen. Arylsulfatase and urease activities tended to be enhanced in the co-cropping and rotation treatments and to be lessened in the mineral fertilization treatments. However, β-glucosidase and phosphatase activities were seen to decrease when legumes were used. Our results showed that the rotation treatment induced a higher organic matter content than the fertilized control did. Actinobacteria was the most-represented bacterial phyla and had lower relative abundance in treatments associating legumes. Conversely, the relative abundance of Acidobacteria and Gemmatimonadetes phyla increased but not significantly in treatments with legumes. The relative abundance of Chloroflexi phylum was shown to be significantly higher for the fertilized rotation control. The relative abundance of β-Proteobacteria subphylum increased but not significantly in treatments with legumes. NMDS analysis showed a clear separation between planted treatments and bare soil and between co-cropping and rotation and fertilized controls. Shannon index showed reduction in microbial diversity that was mainly due to chemical inputs in the soil. This study showed that these new cropping systems influenced both the bacterial diversity and the physico-chemical characteristics of an ultramafic soil. In addition, this study provides evidence that mineral fertilization can negatively impact bacterial communities and some of their functions linked to biogeochemical cycles.

Contamination of soils by potentially toxic elements in the impact zone of tungsten‑molybdenum ore mine in the Baikal region: A survey and risk assessment

Mining of mineral resources exerts strong impact on the environment and leads to irreversible changes in vegetation, soils, atmosphere, surface and ground waters. The aim of this study is to assess the modern geochemical state of soil cover in Zakamensk, a city located in Buryat Republic (Russia) and known as one of the biggest ore mining center in the former Soviet Union. The center was operating for 68 years and closed 17 years ago. Soil-geochemical survey was conducted in 2012 and included collection of 103 soil samples in Zakamensk and 27 samples in the background areas. The bulk contents of 16 potentially toxic elements (PTEs) in the soil samples were determined by mass spectrometry and by atomic emission spectrometry with inductively coupled plasma. Background sites are characterized by increased concentrations of ore elements W and Mo. The mineral deposit development and physical and chemical weathering of tailings' material have led to a sharp increase in Bi, Cd, Cu, Mo, Pb, Sb, W and Zn levels in the soils of different land-use areas. Near the tailings, the concentration of Sb in soils was 356 times higher than in the background area; Cd - 70 times; Mo, Bi, Cu, and W - 42-55 times; Pb and As - 34-37 times; and Zn and Sn - 6-12 higher. In the north of the city a prominent anomaly of PTEs occurs in sandy sediments of the Modonkul floodplain. It was formed due to the washout and subsequent sedimentation of suspended matter carried by the Modonkul River from the Barun-Naryn, the Dzhida, and emergency tailings. So, the anthropogenic activities are the most important source of ore and accompanying elements in the urban soils. High levels of accessory elements also depends on natural factors such as physicochemical properties of soils, position in the landscape, and genesis of parent materials. The environmental assessment of topsoils in Zakamensk showed that Pb, Sb, Cd, and As concentrations exceeds the Russian MPCs by 1.7-7.8 times, which creates a significant hazard for the environment and adversely affects human health.

Assessing the agromining potential of Mediterranean nickel-hyperaccumulating plant species at field-scale in ultramafic soils under humid-temperate climate

Nickel (Ni) agromining of ultramafic soils has been proposed as an eco-friendly option for metal recovery, which can also improve the fertility and quality of these low productive soils. The selection of adequate plant species and the analysis of their performance under the different climatic conditions are of interest for optimising the process and evaluating its full viability. A one-year field experiment was carried out to evaluate the viability of the two Ni-hyperaccumulating Mediterranean species, Alyssum murale and Leptoplax emarginata, for agromining purposes in ultramafic soils under a humid-temperate climate. Field plots of 50 m² were established and the soil was fertilised with gypsum and inorganic NPK fertilisers prior to cropping. Alyssum murale produced a slightly higher Ni yield than L. emarginata, but Ni bioaccumulation was dependent on the plant phenological stage for both species, being maximal at mid-flowering (4.2 and 3.0 kg Ni ha^-1, respectively). In both species, Ni was mainly stored in the leaves, especially in leaves of vegetative stems, but also in flowers and fruits in the case of L. emarginata. The main contributors to Ni yield of A. murale were flowering stems and their leaves, while for L. emarginata they were flowering stems and fruits. Implementing the agromining system increased soil nutrient availability, and modified microbial community structure and metabolic activity (due to fertilisation and plant root activity). The soil bacterial communities were dominated by Proteobacteria, Actinobacteria, Acidobacteria and Chloroflexi, and the agromining crops modified the relative abundance of some phyla (increasing Proteobacteria, Bacteroidetes and Nitrospirae and reducing Acidobacteria and Planctomycetes). Cultivating A. murale increased the densities of total culturable bacteria, while L. emarginata selected Ni-tolerant bacteria in its rhizosphere. In summary, both species showed great potential for their use in Ni agromining systems, although optimising soil and crop management practices could improve the phytoextraction efficiency.

Simultaneous hyperaccumulation of nickel and cobalt in the tree Glochidion cf. sericeum (Phyllanthaceae): elemental distribution and chemical speciation

Hyperaccumulation is generally highly specific for a single element, for example nickel (Ni). The recently-discovered hyperaccumulator Glochidion cf. sericeum (Phyllanthaceae) from Malaysia is unusual in that it simultaneously accumulates nickel and cobalt (Co) with up to 1500 μg g-1 foliar of both elements. We set out to determine whether distribution and associated ligands for Ni and Co complexation differ in this species. We postulated that Co hyperaccumulation coincides with Ni hyperaccumulation operating on similar physiological pathways. However, the ostensibly lower tolerance for Co at the cellular level results in the exudation of Co on the leaf surface in the form of lesions. The formation of such lesions is akin to phytotoxicity responses described for manganese (Mn). Hence, in contrast to Ni, which is stored principally inside the foliar epidermal cells, the accumulation response to Co consists of an extracellular mechanism. The chemical speciation of Ni and Co, in terms of the coordinating ligands involved and principal oxidation state, is similar and associated with carboxylic acids (citrate for Ni and tartrate or malate for Co) and the hydrated metal ion. Some oxidation to Co3+, presumably on the surface of leaves after exudation, was observed.

Contrasting nickel and zinc hyperaccumulation in subspecies of Dichapetalum gelonioides from Southeast Asia

Hyperaccumulator plants have the unique ability to concentrate specific elements in their shoot in concentrations that can be thousands of times greater than in normal plants. Whereas all known zinc hyperaccumulator plants are facultative hyperaccumulators with only populations on metalliferous soils hyperaccumulating zinc (except for Arabidopsis halleri and Noccaea species that hyperaccumulate zinc irrespective of the substrate), the present study discovered that Dichapetalum gelonioides is the only (zinc) hyperaccumulator known to occur exclusively on 'normal' soils, while hyperaccumulating zinc. We recorded remarkable foliar zinc concentrations (10 730 µg g-1, dry weight) in Dichapetalum gelonioides subsp. sumatranum growing on 'normal' soils with total soil zinc concentrations of only 20 µg g-1. The discovery of zinc hyperaccumulation in this tropical woody plant, especially the extreme zinc concentrations in phloem and phloem-fed tissues (reaching up to 8465 µg g-1), has possible implications for advancing zinc biofortification in Southeast Asia. Furthermore, we report exceptionally high foliar nickel concentrations in D. subsp. tuberculatum (30 260 µg g-1) and >10 wt% nickel in the ash, which can be exploited for agromining. The unusual nickel and zinc accumulation behaviour suggest that Dichapetalum-species may be an attractive model to study hyperaccumulation and hypertolerance of these elements in tropical hyperaccumulator plants.

Remediation of soils contaminated with heavy metals with an emphasis on immobilization technology

The major frequent contaminants in soil are heavy metals which may be responsible for detrimental health effects. The remediation of heavy metals in contaminated soils is considered as one of the most complicated tasks. Among different technologies, in situ immobilization of metals has received a great deal of attention and turned out to be a promising solution for soil remediation. In this review, remediation methods for removal of heavy metals in soil are explored with an emphasis on the in situ immobilization technique of metal(loid)s. Besides, the immobilization technique in contaminated soils is evaluated through the manipulation of the bioavailability of heavy metals using a range of soil amendment conditions. This technique is expected to efficiently alleviate the risk of groundwater contamination, plant uptake, and exposure to other living organisms. The efficacy of several amendments (e.g., red mud, biochar, phosphate rock) has been examined to emphasize the need for the simultaneous measurement of leaching and the phytoavailability of heavy metals. In addition, some amendments that are used in this technique are inexpensive and readily available in large quantities because they have been derived from bio-products or industrial by-products (e.g., biochar, red mud, and steel slag). Among different amendments, iron-rich compounds and biochars show high efficiency to remediate multi-metal contaminated soils. Thereupon, immobilization technique can be considered a preferable option as it is inexpensive and easily applicable to large quantities of contaminants derived from various sources.

From phytoremediation of soil contaminants to phytomanagement of ecosystem services in metal contaminated sites

Since the emergence of phytoremediation, much research has focused on its development for (i) the removal of metals from soil and/or (ii) the reduction of metal bioavailability, mobility, and ecotoxicity in soil. Here, we review the lights and shades of the two main strategies (i.e., phytoextraction and phytostabilization) currently used for the phytoremediation of metal contaminated soils, irrespective of the level of such contamination. Both strategies face limitations to become successful at commercial scale and, then, often generate skepticism regarding their usefulness. Recent innovative approaches and paradigms are gradually establishing these phytoremediation strategies as suitable options for the management of metal contaminated soils. The combination of these phytotechnologies with a sustainable and profitable site use (a strategy called phytomanagement) grants value to the many benefits that can be obtained during the phytoremediation of metal contaminated sites, such as, for instance, the restoration of important ecosystem services, e.g. nutrient cycling, carbon storage, water flow regulation, erosion control, water purification, fertility maintenance, etc.

Arsenic removal from As-hyperaccumulator Pteris vittata biomass: Coupling extraction with precipitation

Proper disposal of As-hyperaccumulator Pteris vittata biomass (Chinese brake fern) enhances its application in phytoremediation. The goal of this study was to optimize As removal from P. vittata (PV) biomass by testing different particle sizes, extractants, extraction times and solid-to-liquid ratios. PV biomass was extracted using different extractants followed by different Mg-salts to recover soluble As via precipitation. Water-soluble As in PV biomass varied from 6.8% to 61% of total As depending on extraction time, with 99% of As being arsenate (AsV). Extraction with 2.1% HCl, 2.1% H₃PO₄, 1 M NaOH and 50% ethanol recovered 81, 78, 47 and 14% of As from PV biomass. A follow-up extraction using HCl recovered 27-32% with ethanol recovering only 5%. Though ethanol showed the lowest extractable As, residual As in the biomass was also the lowest. Among the extractants, 35% ethanol was the best to remove As from PV biomass. Approximately 90% As was removed from PV biomass using particle size <1 mm at solid:liquid ratio 1:50 and pH 6 for 2 h. Adding MgCl₂ at As:Mg ratio of 1:400 with pH 9.5 was effective to precipitate soluble As, resulting in 98% removal. Effective removal of As from PV biomass prior to disposal helps make phytoremediation more feasible.

Uptake, sequestration and tolerance of cadmium at cellular levels in the hyperaccumulator plant species Sedum alfredii

Sedum alfredii is one of a few plant species known to hyperaccumulate cadmium (Cd). Uptake, localization, and tolerance of Cd at cellular levels in shoots were compared in hyperaccumulating (HE) and non-hyperaccumulating (NHE) ecotypes of Sedum alfredii. X-ray fluorescence images of Cd in stems and leaves showed only a slight Cd signal restricted within vascular bundles in the NHEs, while enhanced localization of Cd, with significant tissue- and age-dependent variations, was detected in HEs. In contrast to the vascular-enriched Cd in young stems, parenchyma cells in leaf mesophyll, stem pith and cortex tissues served as terminal storage sites for Cd sequestration in HEs. Kinetics of Cd transport into individual leaf protoplasts of the two ecotypes showed little difference in Cd accumulation. However, far more efficient storage of Cd in vacuoles was apparent in HEs. Subsequent analysis of cell viability and hydrogen peroxide levels suggested that HE protoplasts exhibited higher resistance to Cd than those of NHE protoplasts. These results suggest that efficient sequestration into vacuoles, as opposed to rapid transport into parenchyma cells, is a pivotal process in Cd accumulation and homeostasis in shoots of HE S. alfredii. This is in addition to its efficient root-to-shoot translocation of Cd.

Assessment of Ni accumulation capability by fungi for a possible approach to remove metals from soils and waters

Abandoned industrial sites and mines may constitute possible hazards for surrounding environment due to the presence of toxic compounds that may contaminate soils and waters. The possibility to remove metal contaminants, specifically nickel (Ni), by means of fungi was presented exploiting a set of fungal strains isolated from a Ligurian dismissed mine. The achieved results demonstrate the high Ni(II) tolerance, up to 500 mg Ni l^-1, and removal capability of a Trichoderma harzianum strain. This latter hyperaccumulates up to 11,000 mg Ni kg^-1, suggesting its possible use in a bioremediation protocol able to provide a sustainable reclamation of broad contaminated areas.

Nickel biopathways in tropical nickel hyperaccumulating trees from Sabah (Malaysia)

The extraordinary level of accumulation of nickel (Ni) in hyperaccumulator plants is a consequence of specific metal sequestering and transport mechanisms, and knowledge of these processes is critical for advancing an understanding of transition element metabolic regulation in these plants. The Ni biopathways were elucidated in three plant species, Phyllanthus balgooyi, Phyllanthus securinegioides (Phyllanthaceae) and Rinorea bengalensis (Violaceae), that occur in Sabah (Malaysia) on the Island of Borneo. This study showed that Ni is mainly concentrated in the phloem in roots and stems (up to 16.9% Ni in phloem sap in Phyllanthus balgooyi) in all three species. However, the species differ in their leaves - in P. balgooyi the highest Ni concentration is in the phloem, but in P. securinegioides and R. bengalensis in the epidermis and in the spongy mesophyll (R. bengalensis). The chemical speciation of Ni2+ does not substantially differ between the species nor between the plant tissues and transport fluids, and is unambiguously associated with citrate. This study combines ion microbeam (PIXE and RBS) and metabolomics techniques (GC-MS, LC-MS) with synchrotron methods (XAS) to overcome the drawbacks of the individual techniques to quantitatively determine Ni distribution and Ni2+ chemical speciation in hyperaccumulator plants.

Copper and cobalt accumulation in plants: a critical assessment of the current state of knowledge

This review synthesizes contemporary understanding of copper-cobalt (Cu-Co) tolerance and accumulation in plants. Accumulation of foliar Cu and Co to > 300 μg g^-1 is exceptionally rare globally, and known principally from the Copperbelt of Central Africa. Cobalt accumulation is also observed in a limited number of nickel (Ni) hyperaccumulator plants occurring on ultramafic soils around the world. None of the putative Cu or Co hyperaccumulator plants appears to comply with the fundamental principle of hyperaccumulation, as foliar Cu-Co accumulation is strongly dose-dependent. Abnormally high plant tissue Cu concentrations occur only when plants are exposed to high soil Cu with a low root to shoot translocation factor. Most Cu-tolerant plants are Excluders sensu Baker and therefore setting nominal threshold values for Cu hyperaccumulation is not informative. Abnormal accumulation of Co occurs under similar circumstances in the Copperbelt of Central Africa as well as sporadically in Ni hyperaccumulator plants on ultramafic soils; however, Co-tolerant plants behave physiologically as Indicators sensu Baker. Practical application of Cu-Co accumulator plants in phytomining is limited due to their dose-dependent accumulation characteristics, although for Co field trials may be warranted on highly Co-contaminated mineral wastes because of its relatively high metal value.

Increased lead and cadmium tolerance of Typha angustifolia from Huaihe River is associated with enhanced phytochelatin synthesis and improved antioxidative capacity

Heavy metal contamination of water is an increasing environmental problem worldwide, and the use of aquatic plants for phytoremediation of heavy metal pollution has become an important subject of research. One key to successful phytoremediation is the identification of plants that are efficient at sequestering heavy metals. In this study, we examined the growth and heavy metal accumulation of Typha angustifolia and compared growth characteristics and tolerance mechanisms in plants from the Huaihe and Chaohu Rivers irrigated with different concentrations of lead (Pb) and cadmium (Cd). T. angustifolia from Huaihe River showed enhanced tolerance and accumulation of Pb and Cd and had greater biomass and more vigorous growth than the ecotype from Chaohu River. In addition, higher phytochelatin (PC) content and significantly higher superoxide dismutase and catalase activities were detected in T. angustifolia from Huaihe River than in T. angustifolia from Chaohu River. These findings suggest that high Pb and Cd accumulation and tolerance in T. angustifolia from Chaohu River is associated with its higher PC synthesis and better antioxidative capacity, and that the Huaihe ecotype of T. angustifolia might also be an efficient species for phytoremediation of Pb and Cd in water contaminated by heavy metals.

Challenges and opportunities in the phytoremediation of heavy metals contaminated soils: A review

Mining operations, industrial production and domestic and agricultural use of metal and metal containing compound have resulted in the release of toxic metals into the environment. Metal pollution has serious implications for the human health and the environment. Few heavy metals are toxic and lethal in trace concentrations and can be teratogenic, mutagenic, endocrine disruptors while others can cause behavioral and neurological disorders among infants and children. Therefore, remediation of heavy metals contaminated soil could be the only effective option to reduce the negative effects on ecosystem health. Thus, keeping in view the above facts, an attempt has been made in this article to review the current status, challenges and opportunities in the phytoremediation for remediating heavy metals from contaminated soils. The prime focus is given to phytoextraction and phytostabilization as the most promising and alternative methods for soil reclamation.

Organic amendments for improving biomass production and metal yield of Ni-hyperaccumulating plants

Ni phytomining is a promising technology for Ni recovery from low-grade ores such as ultramafic soils. Metal-hyperaccumulators are good candidates for phytomining due to their extraordinary capacity for Ni accumulation. However, many of these plants produce a low biomass, which makes the use of agronomic techniques for improving their growth necessary. In this study, the Ni hyperaccumulators Alyssum serpyllifolium ssp. lusitanicum, A. serpyllifolium ssp. malacitanum, Alyssum bertolonii and Noccaea goesingense were evaluated for their Ni phytoextraction efficiency from a Ni-rich serpentine soil. Effects of soil inorganic fertilisation (100:100:125kgNPKha(-1)) and soil organic amendment addition (2.5, 5 or 10% compost) on plant growth and Ni accumulation were determined. All soil treatments greatly improved plant growth, but the highest biomass production was generally found after addition of 2.5 or 5% compost (w/w). The most pronounced beneficial effects were observed for N. goesingense. Total Ni phytoextracted from soils was significantly improved using both soil treatments (inorganic and organic), despite the decrease observed in soil Ni availability and shoot Ni concentrations in compost-amended soils. The most promising results were found using intermediate amount of compost, indicating that these types of organic wastes can be incorporated into phytomining systems.

Extreme nickel hyperaccumulation in the vascular tracts of the tree Phyllanthus balgooyi from Borneo

Phyllanthus balgooyi (Phyllanthaceae), one of > 20 nickel (Ni) hyperaccumulator plant species known in Sabah (Malaysia) on the island of Borneo, is remarkable because it contains > 16 wt% Ni in its phloem sap, the second highest concentration of Ni in any living material in the world (after Pycnandra acuminata (Sapotaceae) from New Caledonia with 25 wt% Ni in latex). This study focused on the tissue-level distribution of Ni and other elements in the leaves, petioles and stem of P. balgooyi using nuclear microprobe imaging (micro-PIXE). The results show that in the stems and petioles of P. balgooyi Ni concentrations were very high in the phloem, while in the leaves there was significant enrichment of this element in the major vascular bundles. In the leaves, cobalt (Co) was codistributed with Ni, while the distribution of manganese (Mn) was different. The highest enrichment of calcium (Ca) in the stems was in the periderm, the epidermis and subepidermis of the petiole, and in the palisade mesophyll of the leaf. Preferential accumulation of Ni in the vascular tracts suggests that Ni is present in a metabolically active form. The elemental distribution of P. balgooyi differs from those of many other Ni hyperaccumulator plant species from around the world where Ni is preferentially accumulated in leaf epidermal cells.