Effect of CO2 on Microbial Denitrification via Inhibiting Electron Transport and Consumption

Identification of CO2 induces oxidative stress to change bacterial surface properties

The surface properties of bacteria play an essential role in their abilities to perform transmembrane communication, adherence, immobilization, flocculation, etc. However, the responsiveness of bacterial surfaces to elevated atmospheric CO₂ remains unknown. In this study, using the model bacteria, Paracoccus denitrificans, the effect of CO₂ on the primary bacterial surface properties, specifically hydrophobicity and surface charge, has been explored. We found that hydrophilicity and negative surface charge both rose in conjunction with increased atmospheric CO₂ concentrations. Studies of the potential mechanisms involved have illustrated that elevated CO₂ significantly increases the production of polysaccharides in extracellular polymeric substances (EPS). Various hydrophilic groups and negative charges in these polysaccharides prompt hydrophilicity and surface charge variations in bacteria. Further research has identified that elevations in CO₂ result in the accumulation of reactive species, specifically reactive nitrogen species (RNS). In this study, it was found that RNS damaged the permeability of bacterial membranes by inducing lipid peroxidation and then caused the leakage of intracellular substrate, which ultimately led to an increase in EPS polysaccharides. Our findings suggest that changes in bacterial surface properties due to atmospheric CO₂ elevation, as well as the reactions these trigger, merit widespread attention.

Insights into heterotrophic denitrification diversity in wastewater treatment systems: Progress and future prospects based on different carbon sources

Nitrate, as the most stable form of nitrogen pollution, widely exists in aquatic environment, which has great potential threat to ecological environment and human health. Heterotrophic denitrification, as the most economical and effective method to treat nitrate wastewater, has been widely and deeply studied. From the perspective of heterotrophic denitrification, this review discusses nitrate removal in the aquatic environment, and the behaviors of different carbon source types were classified and summarized to explain the cyclical evolution of carbon and nitrogen in global biochemical processes. In addition, the denitrification process, electron transfer as well as denitrifying and hydrolyzing microorganisms among different carbon sources were analyzed and compared, and the commonness and characteristics of the denitrification process with various carbon sources were revealed. This study provides theoretical support and technical guidance for further improvement of denitrification technologies.

Biochar Mitigates N2O Emission of Microbial Denitrification through Modulating Carbon Metabolism and Allocation of Reducing Power

To elucidate the direct effects of biochar on denitrification metabolism at the cellular level, the global response of model denitrifying soil bacterium (Paracoccus denitrificans) to biochar addition was investigated by physiological, proteomic, and metabolomics analyses. The enhancement effect on denitrification was positively correlated with its pyrolysis temperatures (300-500 °C) and dosages (0.1-1%), regardless of precursors [corn straw (CS) or wheat straw). Moreover, the stimulating effect of CS biochar made at 500 °C (CS-500) was mainly attributed to the bulk particles rather than the released soluble compounds. Without direct contact with cells, bulk CS-500 particles might directly modulate the carbon metabolism by the adsorption of extracellular metabolites. Since carbon flux to storage was shifted to oxidative catabolism and growth assimilation, more share of the produced reducing power was used for nitrogen reduction. Meanwhile, except for nitrate reductase, both protein expressions and enzyme activities of nitrite reductase, nitric oxide reductase, and nitrous oxide reductase were up-regulated. Accordingly, the accumulation of N₂O was reduced by 98% due to the optimized electron distribution among denitrifying enzymes. Eventually, the growth rate of Pc. denitrificans enhanced because of the improved energy utilization efficiency. These results updated the regulation mechanism of biochar on denitrification metabolism and N₂O mitigation.

The potential application of supercritical CO2 in microbial inactivation of food raw materials and products

The purpose of this study was to review the possibility of using supercritical CO₂ as a green and sustainable technology for microbial inactivation of raw material for further application in the food industry. The history of the development of supercritical CO₂ microbial inactivation has been widely described in this article. The fundamental scientific part of the process like mechanism of bactericidal action of CO₂ or inactivation of key enzymes were characterized in detail. In summary, this study provides an overview of the latest literature on the use of supercritical carbon dioxide in microbial inactivation of food raw materials and products.

Insights into chronic zinc oxide nanoparticle stress responses of biological nitrogen removal system with nitrous oxide emission and its recovery potential

The nitrogen transformation performances and greenhouse gas nitrous oxide (N₂O) emissions in a sequencing batch reactor under chronic exposure to zinc oxide nanoparticles (ZnO NPs) were quantified and the system's self-recovery potentials were assessed. ZnO NPs posed a dose-dependent depression effect on the removal efficiencies of ammonia nitrogen (NH₄⁺-N) and total nitrogen (TN), and the N₂O emissions. The suppressed N₂O emissions had a positive relationship with the activity ratios of nitrite/NO reductases and N₂O reductase, and were expected to be caused by the inhibited heterotrophic denitrification process. The inhibition of glucose metabolism key enzymes and electron transport chain activities would be responsible for the heterotrophic denitrification performances deterioration. Furthermore, the removal efficiencies of NH₄⁺-N and TN were recovered to control levels through the nitrite-shunt. However, the N₂O emission increased significantly above the control during the recovery period mainly due to the irreversibility of the depressed nitrite oxidation activities.

Enhanced denitrification performance of strain YSF15 by different molecular weight of humic acid: Mechanism based on the biological products and activity

This study aimed to clarify the facilitation by humic acid (HA) fractions (>100, 100-50, 50-30, 30-10, 10-3 and < 3 kDa), as well as their variable effect on denitrification of strain YSF15 under low carbon-nitrogen ratio and nitrate conditions. All HA fractions with 7 mg L^-1 were able to accelerate nitrate removal by strain YSF15 and the role of carbon source was inconspicuous. The molecular weight (MW) < 3 kDa was the best promoter for denitrification, with the efficiency (91.32%) far exceeding the control (43.27%), resulting in more stable oxidation-reduction potential, higher nutrients utilization and electron transport activity, more compact protein structure in extracellular polymeric substances and the production of endogenous HA. Each HA fraction could change the bio-products and denitrification activity of strain YSF15. This study sheds light on the facilitation of HA in denitrification from the perspective of MW, implying the potential effect of HA on denitrifying bacteria in community.

Weak electricity stimulates biological nitrate removal of wastewater: Hypothesis and first evidences

Nitrate pollution in water is a worldwide health and environmental concern. Biological nitrate removal of wastewater is widely used countering eutrophication of water bodies; however it could be troublesome and expensive when influent carbon source is insufficient. Here we present a novel process, the microbial fuel cell (MFC)-resistance-type electrical stimulation denitrification process (RtESD) using microbial weak electricity originated from the wastewater, to enhance nitrate removal. Results show that the optimal nitrate dependent denitrification rate (0.027 mg N/L·h) and nitrate removal efficiency (98.1%) can be achieved; partial autotrophic denitrification was enhanced in RtESD under stimulation of 0.2 V of microbial weak electricity (MWE). Aromatic proteins also increased in the presence of 0.2 V MWE stimulation according to three-dimensional excitation-emission matrix (3D-EEM) fluorescence spectroscopy profiles, indicating that electron transfer could be improved in the case of MWE stimulation. Furthermore, the microbial community structure and diversity analysis results demonstrated that MWE stimulation inhibited the heterotrophic denitrifying bacteria and activated the autotrophic denitrifying bacteria in RtESD. Two hypotheses, enhancement of electron transfer and improvement of microorganism activity, were proposed regarding to the MWE stimulated pathways. This study provided a promising method utilizing MWE derived from wastewater to improve the denitrification rate and removal efficiency of nitrate-containing wastewater treatment processes.

Linear anionic surfactant (SDBS) destabilized anammox process through sludge disaggregation and metabolic inhibition

The increase of emerging contaminants, such as surfactants, is one of the major challenges to biological wastewater treatment. However, the potential impact of linear alkylbenzene sulphonates (LAS), a major class of anionic surfactants, on anammox process is unclear. The long-term effects of sodium dodecyl benzene sulfonate (SDBS, as a model LAS) on reactor performance, microbial community and sludge properties were investigated in this study. The presence of 5 mg L^-1 SDBS promoted the release of extracellular microbial products from anammox granules and the wash-out of anammox population via effluent. Despite sludge disaggregation, the reactor performance was robust to the exposure of 5 mg L^-1 SDBS due to functional redundancy. With the further increase of SDBS to 10 mg L^-1, the metabolic activity of anammox biomass and the transcription and post-translation of hydrazine dehydrogenase were significantly decreased. The potential mechanism might be associated with the damage on cell membrane that induced the leakage of intracellular matrix. These results highlight the need to consider the potential risk of LAS to operation of anammox process in biological wastewater treatment plant.

Mechanism insights into polyhydroxyalkanoate-regulated denitrification from the perspective of pericytoplasmic nitrate reductase expression

For enhanced biological nutrient removal (BNR) process, the polyhydroxyalkanoate (PHA) can be used as an eco-friendly internal as well as external substrate for regulating the growth of heterotrophic denitrifiers and promoting the denitrification process for deep nitrogen removal from wastewater. However, the exact mechanisms by which PHA impacts bacterial metabolism and affects the electron transfer of denitrification remain unknown. In this study, the in-depth mechanism investigation for PHA-mediated denitrification based on the jointly applied transcriptomic, proteomic and Western Blotting techniques was performed on a model denitrifier, Pseudomonas stutzeri. Results showed that PHA dramatically fostered the growth of Pseudomonas stutzeri, resulting in improved nitrate removal efficiency from 32.8% to 45.8%. Comparison of protein expression profiles indicated that PHA promoted the expression of enzyme NapB and NapA by approximately 10.34 and 20.01 times, respectively, which were both in charge of reduction from nitrate to nitrite. Based on transcriptional sequencing and Tandem Mass Tags, the correlation results also showed that differential proteins and genes with the same expression trend were positively correlated (R² = 0.427, p-value<0.033). Western Blotting approach was further developed to confirm the up-regulated expression of target protein with the higher proportion of PHA in carbon source of the medium, which proved the reliability of proteomics results. All the findings presented here are believed to deepen the understanding of microbial mechanism about PHA-enhanced denitrification from the novel perspective of associated electron-transfer enzymatic proteins.

History of petroleum disturbance triggering the depth-resolved assembly process of microbial communities in the vadose zone

Biogeochemical gradient forms in vadose zone, yet little is known about the assembly processes of microbial communities in this zone under petroleum disturbance. This study collected vadose zone soils at three sites with 0, 5, and 30 years of petroleum contamination to unravel the vertical microbial community successions and their assembly mechanisms. The results showed that petroleum hydrocarbons exhibited higher concentrations at the long-term contaminated site, showing negative impacts on some soil properties, retarding in the surface soils and decreasing along soil depth. Cultivable fraction of heterotrophic bacteria and microbial α-diversity decreased along depth in vadose zones with short-term/no contamination history, but exhibited an opposite trend with long-term contamination history. Petroleum contamination intensified the vertical heterogeneity of microbial communities based on the contamination time. Microbial co-occurrence network revealed the lowest species co-occurrence pattern at the long-term contaminated site. The distance-decay patterns and null model analysis together suggested distinct assembly mechanisms at three sites, where dispersal limitation (42-45%) was higher and variable and homogenizing selections were lower (37-38%) in vadose zones under petroleum disturbance than those in the uncontaminated vadose zone. Our findings help to better understand the subsurface biogeochemical cycles and bioremediation of petroleum-contaminated vadose zones.

Effects of norfloxacin on nitrate reduction and dynamic denitrifying enzymes activities in groundwater

The impact of antibiotics on denitrification has attracted widespread attention recently. Norfloxacin, as a representative of fluoroquinolone antibiotics, is extensively detected in groundwater. However, whether the release of norfloxacin into the groundwater poses potential risks to denitrification remains unclear. In this study, effect of norfloxacin on denitrification was investigated. The results showed that increasing norfloxacin from 0 to 100 μg/L decreased nitrate removal rate from 0.68 to 0.44 mg/L/h, but enhanced N2O emission by 177 folds. Additionally, 100 μg/L of norfloxacin decreased nitrite accumulation by 50.6%. Corresponding inhibition of norfloxacin on bacterial growth, carbon source utilization, electron transport system activity and genes expression was revealed. Furthermore, denitrifying enzyme dynamic monitoring results showed that norfloxacin inhibited nitrate reductase activity, and enhanced nitrite reductase activity to some extent in denitrification process, which was consistent with the variations of nitrate and nitrite. Meanwhile, sensitivity analysis demonstrated that nitrate reductase was more easily affected by norfloxacin than nitrite reductase. Overall, this study suggests that multiple regulation of denitrifying enzyme activity contributes to evaluating the comprehensive effects of antibiotics on groundwater denitrification.

Efficient nitrate removal by Pseudomonas mendocina GL6 immobilized on biochar

The performance of nitrate removal by Pseudomonas mendocina GL6 cells immobilized on bamboo biochar was investigated. The results showed that immobilized bacterial cells performed better nitrate removal than the free bacterial cells, and the nitrate removal rate increased from 6.51 mg/(L·h) of free cells to 8.34 mg/(L·h) of immobilized cells. The nitrate removal of immobilized bacterial cells fitted well to the zero-order kinetics model. Moreover, bath experiments showed that immobilized bacterial cells displayed more nitrate removal capacity under different conditions than free bacterial cells due to the protection of biochar carrier. The subsequent mechanistic study suggested that biochar promoted the expression level of denitrification functional genes (napA and nirK) and electron transfer genes involved in denitrification (napB and napC), which resulted in the increase of nitrate removal efficiency. Thus, biochar-immobilized P. mendocina GL6 has much potential to remove nitrate from wastewater via aerobic denitrification.

Nanoplastics Disturb Nitrogen Removal in Constructed Wetlands: Responses of Microbes and Macrophytes

Nanosized plastics (nanoplastics) releasing into the wastewater may pose a potential threat to biological nitrogen removal. Constructed wetland (CW), a wastewater treatment or shore buffer system, is an important sink of nanoplastics, while it is unclear how nitrogen removal in CWs occurs in response to nanoplastics. Here, we investigated the effects of polystyrene (PS) nanoplastics (0, 10, and 1000 μg/L) on nitrogen removal for 180 days in CWs. The results revealed that total nitrogen removal efficiency decreased by 29.5-40.6%. We found that PS penetrated the cell membrane and destroyed both membrane integrity and reactive oxygen species balance. Furthermore, PS inhibited microbial activity in vivo, including enzyme (ammonia monooxygenase, nitrate reductase, and nitrite reductase) activities and electron transport system activity (ETSA). These adverse effects, accompanied by a decline in the relative abundance of nitrifiers (e.g., Nitrosomonas and Nitrospira) and denitrifiers (e.g., Thauera and Zoogloea), directly accounted for the strong deterioration observed in nitrogen removal. The decline in leaf and root activities decreased nitrogen uptake by plants, which is an important factor of deterioration in nitrogen removal. Overall, our results imply that the presence of nanoplastics in the aquatic environment is a hidden danger to the global nitrogen cycle and should receive more attention.

Facilitated bio-mineralization of N,N-dimethylformamide in anoxic denitrification system: Long-term performance and biological mechanism

Due to highly recalcitrant and toxicological nature of N,N-dimethylformamide (DMF), efficient removal of DMF is challenging for biological wastewater treatment. In this study, an anoxic denitrification system was developed and continuously operated for 220 days in order to verify the enhanced DMF biodegradation mechanism. As high as 41.05 mM DMF could be thoroughly removed in the anoxic denitrification reactor at hydraulic residence time (HRT) of 24 h, while the total organic carbon (TOC) and nitrate removal efficiencies were as high as 95.7 ± 2.5% and 98.4 ± 1.1%, respectively. Microbial community analyses indicated that the species related to DMF hydrolysis (Paracoccus, Brevundimonas and Chryseobacterium) and denitrification (Paracoccus, Arenimonas, Hyphomicrobium, Aquamicrobium and Bosea) were effectively enriched in the anoxic denitrification system. Transcriptional analysis coupled with enzymatic activity assay indicated that both hydrolysis and mineralization of DMF were largely enhanced in the anoxic denitrification system. Moreover, the occurrence of microbial denitrification distinctly facilitated carbon source utilization to produce electron and energy, which was rather beneficial for better reactor performance. This study demonstrated that the anoxic denitrification system would be a potential alternative for efficient treatment of wastewater polluted by recalcitrant pollutants such as DMF.

Rising atmospheric CO2 levels result in an earlier cyanobacterial bloom-maintenance phase with higher algal biomass

The effect of rising atmospheric CO₂ on freshwater lakes is a subject of considerable debate. However, it is not clear how rising CO₂ concentration affects cyanobacterial bloom development under potential nutrient limitation conditions and if CO₂ should be taken into account in making nutrient reduction strategy. To fill the knowledge gaps, this study investigated the spatiotemporal variability in aquatic CO₂ concentration (pCO₂) from 2006 to 2016 in Lake Taihu, where cyanobacterial blooms often occurred from late spring to the early fall. Lake Taihu is an atmospheric CO₂ source in May and November, with only 18% and 11% pCO₂-undersaturated areas, respectively. During cyanobacterial bloom in August, 81% of the lake areas are pCO₂-undersaturated, absorbing ~ 0.53 t C/h of atmospheric CO₂. The results demonstrated that CO₂ transfer across air-water interface was important in supporting cyanobacterial bloom development. Besides, Field investigation showed that the chlorophyll a level is significantly positively correlated with supersaturated pCO₂ (>13.56 µmol/L) in May, but pCO₂ decreases with high chlorophyll a levels in August, suggesting that cyanobacterial growth would be promoted by high pCO₂ over a threshold. These observations suggested that the effect of rising atmospheric CO₂ on freshwater lakes and cyanobacterial blooms should be paid attention to. Further, when the N- and P-levels are >0.3 mg/L and >0.02 mg/L, respectively, high-pCO₂ conditions allow a more rapid growth rate of cyanobacteria via improved nutrient-use efficiency. Moreover, cyanobacteria afford maximum N- or P-use efficiency at lower N- or P-concentrations with high CO₂ concentration. This improvement would result in an earlier bloom-maintenance phase and higher cyanobacterial biomass. In this case, nutrient reduction is more imperative under future high CO₂ conditions.

Direct and Indirect Effects of Increased CO2 Partial Pressure on the Bioenergetics of Syntrophic Propionate and Butyrate Conversion

Simultaneous digestion and in situ biogas upgrading in high-pressure bioreactors will result in elevated CO₂ partial pressure (pCO₂). With the concomitant increase in dissolved CO₂, microbial conversion processes may be affected beyond the impact of increased acidity. Elevated pCO₂ was reported to affect the kinetics and thermodynamics of biochemical conversions because CO₂ is an intermediate and end-product of the digestion process and modifies the carbonate equilibrium. Our results showed that increasing pCO₂ from 0.3 to 8 bar in lab-scale batch reactors decreased the maximum substrate utilization rate (r_smax) for both syntrophic propionate and butyrate oxidation. These kinetic limitations are linked to an increased overall Gibbs free energy change (ΔG_Overall) and a potential biochemical energy redistribution among syntrophic partners, which showed interdependence with hydrogen partial pressure (pH₂). The bioenergetics analysis identified a moderate, direct impact of elevated pCO₂ on propionate oxidation and a pH-mediated effect on butyrate oxidation. These constraints, combined with physiological limitations on growth exerted by increased acidity and inhibition due to higher concentrations of undissociated volatile fatty acids, help to explain the observed phenomena. Overall, this investigation sheds light on the role of elevated pCO₂ in delicate biochemical syntrophic conversions by connecting kinetic, bioenergetic, and physiological effects.

Bio-denitrification performance enhanced by graphene-facilitated iron acquisition

Bio-denitrification is widely used for remediation of nitrate contaminated site or removal of nitrate from wastewater, but its efficiency is not always satisfied and high nitrite accumulation and nitrous oxide emission occur frequently. Iron plays an important role in achieving efficient biological denitrification. Nevertheless, its concentration in cells is usually inadequate, and additional supply of iron to denitrification system has been adopted in the literature. In this study, a novel approach to increase the intracellular iron concentration of denitrifying microbes by using graphene to accelerate iron transport, which significantly enhanced bio-denitrification and decreased intermediates accumulations, was reported, and the underlying mechanisms were explored. The presence of 50 mg/L of graphene was observed to not only significantly promote nitrate removal efficiency by 67.3%, but also decrease nitrite and nitrous oxide generation by 49.0% and 63.9%, respectively. It was found that graphene promoted the generation, transfer and consumption of electrons, increased the activities or gene expressions of Fe-containing enzymes (such as complex I, complex III, various cytochromes, and most denitrification reductases), and enhanced the growth of denitrifiers due to iron acquisition by denitrifying bacteria being remarkably facilitated, leading to a significant increment of intracellular iron concentration. Meanwhile, the intracellular proton-motive force and ATP levels were promoted as well. This study provided a new approach to enhancing bio-denitrification and revealed a novel insight into biological iron acquisition.

Effect and ameliorative mechanisms of polyoxometalates on the denitrification under sulfonamide antibiotics stress

The environmental risks of the sulfonamide antibiotics have attracted much attention recently. In this study, the inhibition effects of sulfadiazine (SDZ) on denitrification electron transfer system (ETS) and ameliorative mechanisms of phosphomolybdic acid (PMo12) were first explored. When denitrification was under 2 mg/L SDZ stress, experiments indicated that PMo12 enhanced NO3--N reduction efficiency and rate from 68.30% to 100.00% and 124.22 to 184.59 N/g VSS/h, respectively. Electron transfer rate and consumption efficiency in denitrification ETS were enhanced to ameliorate SDZ inhibition, which was due to the more secreted riboflavin and cytochrome c and the increased denitrifying enzymes activity with PMo12 mediation. In addition, the microbial growth inhibition and cell membrane damage were ameliorated due to the more EPS surrounding microbe with PMo12 mediation. Higher diversity of denitrifying microbe with PMo12 mediation also promoted denitrification under SDZ stress. This work provided promising strategy to ameliorate antibiotics inhibition in the wastewater bio-treatment.

Performance enhancement of H2S-based autotrophic denitrification with bio-gaseous CO2 as sole carbon source through new pH adjustment materials

H₂S-based denitrification could achieve synchronous removal of nitrate and H₂S and had been regarded as an efficient way for biogas desulfurization and wastewater denitrification. Using CO₂ in biogas as carbon source had a potential of saving cost further, but the performance deteriorated due to the drop in pH. Two kinds of nature ore, medical stone and phosphate ore, were added as new pH adjustment materials in this study, and feasibility of using CO₂ as sole carbon source for H₂S-based denitrification was investigated. As a result, both materials could increase the pH from 4.5 to above 6.0. Compared with medical stone, higher level of pH (up to 6.39) and nitrate removal efficiency (99.1%) were obtained with phosphate ore. In addition, ATP increased more rapidly than the control, reflecting improvement on microbial activities. Therefore, phosphate ore as the pH adjustment material could improve H₂S-based denitrification performance obviously.

Long-term effects of chlorothalonil on microbial denitrification and N2O emission in a tea field soil

Pesticide chlorothalonil is widely applied in tea agroecosystem, potentially disturbing soil microbial-mediated nitrogen cycle. The underlying toxicity mechanism, however, is not well explored. Here, we investigated the long-term effects of chlorothalonil on soil microbial denitrification and N₂O emission pattern in a tea field after 40 days of exposure. Results showed that chlorothalonil inhibited denitrification process but remarkably promoted N₂O emission by 380-830%. Chlorothalonil significantly inhibited N₂O reductase activity but did not affected nosZ abundance. Our results further revealed that chlorothalonil influenced soil denitrification by directly suppressing microbial electron transport system activity, and decreasing electron donor nicotinamide adenine dinucleotide (NADH) and energy source adenosine triphosphate (ATP) levels. Additionally, chlorothalonil also downregulated denitrifying functional genes (narG, nirS, and norB) and declined the relative abundances of potential denitrifiers (i.e., Pseudomonas and Streptomyces). Stepwise regression and path modeling suggested that nitrate reductase was the most significant factor in explaining denitrification rate under chlorothalonil applications. This study provides important information for revealing the chronic impacts of pesticide on tea soil denitrification and N₂O emission on the basis of electron transport mechanism. Most significantly, N₂O emission is underestimated in chlorothalonil-treated soils, which suggests that future estimations of N₂O emission from agricultural lands should take account of pesticide dependency conditions.

Copper oxide nanoparticles inhibited denitrifying enzymes and electron transport system activities to influence soil denitrification and N2O emission

Nanopesticides are widely applied in modern agricultural systems to replace traditional pesticides, which inevitably leads to their accumulation in soils. Nanopesticides based on copper oxide nanoparticles (CuO NPs) may affect the soil nitrogen cycle, such as the denitrification process; however, the mechanism remains unclear. Here, acute exposure experiments for 60 h were conducted to explore the effects of CuO NPs (10, 100, 500 mg kg^-1) on denitrification. In this study, Cu speciation, activities of denitrifying enzymes, electron transport system activity (ETSA), expression of denitrifying functional genes, composition of bacterial communities and reactive oxygen species (ROS) were determined. In all treatments, Cu ions was the dominant form and responsible for the toxicity of CuO NPs. The results indicated that CuO NPs treatments at 500 mg kg^-1 remarkably inhibited denitrification, led to an 11-fold increase in NO₃^- accumulation and N₂O emission rates decrease by 10.2-24.1%. In the denitrification process, the activities of nitrate reductase and nitric oxide reductase reduced by 21.1-42.1% and 10.3-16.3%, respectively, which may be a reason for the negative effect of CuO NPs. In addition, ETSA was significantly inhibited with CuO NPs applications, which reflects the ability of denitrification to accept electrons. Denitrifying functional genes and bacterial communities composition were changed, thus further influencing the denitrification process. ROS analysis showed that there were no significant differences among NPs treatments. This research improves the understanding of CuO NPs impact on soil denitrification. Further attention should be paid to the nitrogen transformation in agricultural soils in the presence of nanopesticides.

Effects of Ag NPs on denitrification in suspended sediments via inhibiting microbial electron behaviors

The wide use of silver nanoparticles (Ag NPs) inevitably leads to their increasing emission into aquatic environments. However, before their final deposition into sediments, the ecological effects of Ag NPs in suspended sediment (SPS) systems have not received much attention. Herein, we investigated the influences of Ag NPs on denitrification in SPS systems, and explored the potential toxicity mechanism through microbial metabolism (electron behaviors) and isotope tracing (added ¹⁵NO₃^-). After exposure to 10 mg/L Ag NPs, electron generation, transport and consumption during denitrification were clearly inhibited, which led to a decrease in the SPS denitrification rate. Specifically, the generation of NADH (electron donor) was significantly decreased to 59.92-86.47% with the Ag NPs treatments by affecting the degradation of glucose, one of the major reasons for the decreased denitrification. It also indicated that Ag NPs could affect nitrogen metabolism by influencing carbon metabolism. In addition, ETSA was clearly inhibited by the affected electron transfer and reception during denitrification; that was the most direct way in the microbial electron transport chain to affect the SPS denitrification rate. Furthermore, the particle size and concentration of SPS affected the toxicity of Ag NPs. The denitrification process in SPS systems with a smaller particle size and lower particle concentration was easily affected by Ag NPs, suggesting that SPS systems dominated by clay (particle size < 3.9 μm) or that less turbulence (having low SPS concentration) might be at greater risk factor when exposed to NPs. Thus, it is important to understand the risks of pollutants, such as Ag NPs, to biogeochemical cycles and ecosystem function in SPS systems.

Silver nanoparticles inhibit denitrification by altering the viability and metabolic activity of Pseudomonas stutzeri

The environmental toxicity of silver nanoparticles (AgNPs) is currently the focus of intensive research. However, the mechanisms underlying the cytotoxic effects of AgNPs on denitrifying microbes have yet to be explicitly demonstrated. Herein, Pseudomonas stutzeri was used to explore the effects of AgNPs on denitrification and cytotoxicity. The denitrification efficiency decreased from 94.91% in the AgNP-free treatment to 87.66%, 60.51% and 36.10% with treatments of 3.125, 6.25 and 12.5 mg/L AgNPs, respectively. The inhibition and delay in the denitrification process from treatment with AgNPs likely occurred through alteration of the viability and metabolic activity of P. stutzeri. Flow cytometry analysis indicated that the early apoptotic rates of P. stutzeri were 8.72%, 30.60%, and 48.60% with treatments of 3.125, 6.25, and 12.5 mg/L AgNPs, respectively. Results for scanning electron microscope (SEM) imaging, ζ-potential analysis, lactate dehydrogenase (LDH) release and malondialdehyde (MDA) production assays demonstrated adsorption of AgNPs on the cell surface, which altered membrane potential and mediated lipid peroxidation; these events eventually resulted in the aberration of cell morphology. Transmission electron microscopy (TEM) images and measurements of Ag content distribution by ICP-MS indicated that AgNPs were easily internalized by P. stutzeri, which increased the accumulation of reactive oxygen species (ROS). Furthermore, the presence of AgNPs also greatly inhibited expression of genes napA, nirS, cnorB, and nosZ, thereby reducing the activities of nitrate reductase (NAR) and nitrite reductase (NIR). These findings will help further our understanding of the mechanism underlying AgNPs cytotoxicity, and provide the means to evaluate the negative effect of nanoparticles in the environment.

Metagenomic analysis of the biotoxicity of titanium dioxide nanoparticles to microbial nitrogen transformation in constructed wetlands

Extensive use of titanium dioxide nanoparticles (TiO₂ NPs) in various products has increased the release of these particles into wastewater, posing potential environmental risks. As an ecological wastewater treatment facility, constructed wetland (CW) is an important sink of NPs. However, little is known about the effects of NPs on microbial nitrogen transformation and related genes in CWs. In this study, short-term (5 days) and long-term (60 days) exposure experiments were conducted to investigate the effect of TiO₂ NPs (0, 1, and 50 mg/L) on microbial nitrogen removal in CWs. The results showed that nitrogen removal efficiency was decreased by 35%-51% after long-term exposure to TiO₂ NPs. Metagenomic analysis further confirmed that TiO₂ NPs declined the relative abundance of functional genes and those enzyme encoding genes involved in the nitrogen metabolism pathway and glycolysis metabolism process. Furthermore, our data proved that the indigent glycolysis metabolism process resulted in the shortage of electron (NADH) and energy sources (ATP), causing inefficient nitrogen removal. Overall, these results revealed that the accumulation of TiO₂ NPs altered the genetic expression of biofilm in CWs, which had significant impacts on biological nitrogen transformation.

Enhancement of denitrification performance with reduction of nitrite accumulation and N2O emission by Shewanella oneidensis MR-1 in microbial denitrifying process

Bio-denitrification (i.e., microbial reduction of nitrate to gaseous nitrogen) is usually reported to be affected by operating and environmental parameters, such as carbon source type, pH value, and temperature. In this paper, the enhancement of denitrification performance with the elimination of nitrite accumulation and nitrous oxide emission by Shewanella oneidensis MR-1 were investigated and the mechanisms were explored. It was found that S. oneidensis MR-1 itself had marginal nitrate removal capacity, but its presence in the denitrification system of a well-studied denitrifier (Paracoccus denitrificans) obviously enhanced nitrate removal efficiency (from 65.3% to 97.8%) and reduced nitrite accumulation (0.67 against none-detectable) and N₂O generation (from 8.87 μm/mM-TN to none-detectable). The mechanism study showed that S. oneidensis MR-1 promoted electrons transfer activity via the formation of nanotube between cells, which resulted in the increase of denitrification enzymes activity, carbon source metabolism, ATP level and cell viability. As the generation, transfer and consumption of electrons were enhanced by S. oneidensis MR-1, the improvement of denitrification performance with reduction of nitrite accumulation and N₂O emission was therefore achieved. Finally, the performance of denitrification enhanced by S. oneidensis MR-1 was testified by laboratory groundwater treatment experiment. This study suggested the potential role of S. oneidensis MR-1 in accelerating nitrate bio-transformation in nitrogen geochemical cycle and increasing bio-treatment of nitrate contamination with negligible harmful intermediates (nitrite and N₂O) accumulation.

Tetracycline-induced effects on the nitrogen transformations in sediments: Roles of adsorption behavior and bacterial activity

Nitrification and denitrification are the most important nitrogen transformation processes in the environment. Recently, due to widespread use, antibiotics have been reported to lead to environmental risks. Tetracycline (TC) is one of the most extensively used antibiotics in many areas. However, its reported effects on nitrogen transformations were conflicting in previous studies. In this study, the effects of TC on nitrogen transformations in sediment were investigated by analyzing TC transport and bacterial activity. It was found that the adsorption of TC onto the sediment was favorable and spontaneous, with adsorption capacity 54.3 mg/kg. The adsorption kinetics of TC onto the sediment and the isotherm fitted the Elvoich and Freundlich models, respectively, indicating that the adsorption was a chemisorption process, including electrostatic interactions and chemical bonding between TC and the sediment. TC showed no effect on nitrification in the sediment, but significantly inhibited the reduction of nitrate and nitrite during denitrification, consistent with observations made for the model denitrifier Paracoccus denitrificans under TC stress. Mechanistic study indicated that TC at 130 μg/g-cell inhibited 50.7% of P. denitrificans growth and 61.6% of cell viability. Meanwhile, the catalytic activities of the key denitrifying enzymes, nitrate reductase (NAR) and nitrite reductase (NIR), decreased to 29.1% and 68.0% of the control levels when the TC concentration was 130 μg/g-cell, suggesting that NAR was more sensitive to the TC than NIR, which contributed to a delay in nitrite accumulation.

Nitrate stimulation of N-Methylpyrrolidone biodegradation by Paracoccus pantotrophus: Metabolite mechanism and Genomic characterization

Due to the toxicological nature of N-methylpyrrolidone (NMP), the conventional anaerobic bioprocess is quite ineffective for NMP removal from wastewater. In order to achieve effective NMP biodegradation under anoxic condition, Paracoccus pantotrophus NJUST38 was isolated for the first time. The supplementation of nitrate into anoxic system resulted in complete removal of 5 mM NMP by NJUST38 within 11 h compared to 24% in the anaerobic control system in the absence of nitrate. Genome characterization revealed that NMP biodegradation catalyzed by several key enzymes/genes, including N-methylhydantoin amidohydrolase (hyuB), methyltransferase (cobA), 4-aminobutyrate-2-oxoglutarate transaminase (gabT), succinate-semialdehyde dehydrogenase (gabD) and so on. NMP biodegradation pathway was proposed based on several intermediates, where NMP was biodegraded mainly for providing electrons and reducing power to support microbial denitrification through tricarboxylic acid (TCA) cycle. The proposed mechanism should aid our mechanistic understanding of NMP biodegradation by Paracoccus pantotrophus and the development of sustainable bioremediation strategies.

Cyanobacteria in eutrophic waters benefit from rising atmospheric CO2 concentrations

Rising atmospheric carbon dioxide (CO₂) may stimulate the proliferation of cyanobacteria. To investigate the possible physiological responses of cyanobacteria to elevated CO₂ at different nutrient levels, Microcystis aeruginosa were exposed to different concentrations of CO₂ (400, 1100, and 2200 ppm) under two nutrient regimes (i.e., in nutrient-rich and nutrient-poor media). The results indicated that M. aeruginosa differed in its responses to elevated atmospheric CO₂ at different nutrient levels. The light utilization efficiency and photoprotection of photosystem II were improved by elevated CO₂, particularly when cells were supplied with abundant nutrients. In nutrient-poor media, both total organic carbon and the polysaccharide/protein ratio of the extracellular polymeric substance increased with elevated CO₂, accompanied by high cellular carbon/nitrogen ratios. Besides, cells growing with fewer nutrients were more prone to suffer intracellular acidification with elevated CO₂ than those growing with abundant nutrients. Nonetheless, alkaline phosphate activity of cyanobacteria was improved by high CO₂, provided that reduced pH was in the optimum range for alkaline phosphate activity. Nitrate reductase activity was inhibited by elevated CO₂ regardless of nutrient levels, leading to a reduced nitrate uptake. These changes indicate that the biogeochemical cycling of nutrients would be affected by higher atmospheric CO₂ conditions. Overall, cyanobacteria in eutrophic waters may benefit more than in oligotrophic waters from rising atmospheric CO₂ concentrations, and evaluations of the influence of rising atmospheric CO₂ on algae should account for the nutrient level of the ecosystem.

Enhanced denitrification performance and biocatalysis mechanisms of polyoxometalates as environmentally-friendly inorganic redox mediators

Polyoxometalates (POMs) used in chemical catalysis field were first explored their effect on the denitrification process. Experiments demonstrated that NO₃^--N reduction rate with 0.05 mM phosphomolybdic acid (PMo₁₂) was approximately 3.93-fold higher than the PMo₁₂-free system. Simultaneously, PMo₁₂ also had positive effect on NO₂^--N reduction. Compared with the PMo₁₂-free system, the solution resistance and oxidation-reduction potential were decreased, and the activation energy (E_a) was reduced by 51.84 kJ/mol. Besides, electron conductive substances in extracellular polymeric substances were stimulated by PMo₁₂. NADH and riboflavin were enhanced to increase denitrification electron transport system activity. Higher microbial diversity and enrichment of Salmonella were observed in the PMo₁₂-supplemented system. Based on the above analysis, the catalyzing mechanisms of PMo₁₂ are proposed that PMo₁₂ made it easier for electron transferring from electron donor to electron acceptor and shifted bacterial community structure. These findings may provide a promising strategy for nitrogen wastewater treatment.

Tetrabromobisphenol A (TBBPA) inhibits denitrification via regulating carbon metabolism to decrease electron donation and bacterial population

The potential risks of brominated flame retardants (BFRs) like tetrabromobisphenol A (TBBPA) have attracted much attention. However, the influence of TBBPA on functional microbes remains poorly understood, especially with regards to denitrification, which is closely related with the carbon and nitrogen cycles, eutrophication and greenhouse gas emission. Herein, we found that 1.0 mg/L of TBBPA significantly decreased the total nitrogen removal efficiency by 81.7%, but increased the accumulation of NO₂^--N (by 81.5%) and N₂O (by 172-fold). This was found to be underlie by the significant decrease in both the denitrifying capability of denitrifiers and total bacterial population. Further investigation revealed that TBBPA inhibited the pathways of glucolysis and pentose phosphate, and promoted glyoxylate bypass via regulating genes expressions of key enzymes (such as glucose-6-phosphate isomerase, pyruvate dehydrogenase, isocitrate lyase, etc.), then decreased the generation of NADH serving as electron donor for denitrification, and inhibited the denitrifying capability of denitrifiers. Moreover, insufficient NADH stimulated the accumulation of denitrifying intermediates (NO₂^--N and N₂O), which induced the increase of reactive nitrogen species (RNS), whose accumulation decreased proliferation and increased apoptosis of denitrifying bacteria. Finally, the decrease in the denitrifying capability of denitrifier and bacterial population resulted in negative denitrifying performance.

CO2 promotes the conjugative transfer of multiresistance genes by facilitating cellular contact and plasmid transfer

The dissemination of antibiotic resistance genes (ARGs), especially via the plasmid-mediated conjugation, is becoming a pervasive global health threat. This study reported that this issue can be worse by CO₂, as increased CO₂ was found to facilitate the conjugative transfer of ARGs carried on plasmid RP4 by 2.4-9.0 and 1.3-3.8 fold within and across genera, respectively. Mechanistic studies revealed that CO₂ benefitted the cell-to-cell contact by increasing cell surface hydrophobicity and decreasing cell surface charge, both of which resulted in the reduced intercellular repulsion. Besides, the transcriptional expression of genes responsible for global regulator (korA, korB and trbA), plasmid transfer and replication system (trfAp), and mating pair formation system (traF and traG) were all influenced by CO₂, facilitating the mobilization and channel transfer of plasmid. Furthermore, the presence of CO₂ induced the release of intracellular Ca²⁺ and increased the transmembrane potential of recipients, which contributed to the increased proton motive force (PMF), providing more power for DNA uptake. This is the first study addressing the potential risks of increased CO₂ on the propagation of ARGs, which provides a new insight into the concerns of anthropogenic CO₂ emissions and CO₂ storage.

Low-level free nitrous acid efficiently inhibits the conjugative transfer of antibiotic resistance by altering intracellular ions and disabling transfer apparatus

Recently, the dissemination of antibiotic resistance genes (ARGs) via plasmid-mediated conjugation has been reported to be facilitated by a series of contaminants. This has highlighted potential challenges to the effective control of this principal mode of horizontal transfer. In the present study, we found that low levels (<0.02 mgN/L) of free nitrous acid (FNA) remarkably inhibited (over 90%) the conjugative transfer of plasmid RP4, a model broad-host-range plasmid, between Escherichia coli. The antimicrobial role of FNA at the applied dosages was firstly ruled out, since no dramatic reductions in viabilities of donor or recipient were observed. Instead, FNA appeared to reduce the available intracellular free Mg²⁺, which was confirmed to be triggered by the liberation of intracellular Fe²⁺. These alterations in intracellular Mg²⁺ and Fe²⁺ concentrations were found to significantly limit the available energy for conjugative transfer through suppression of glycolysis by decreasing the activities of glycogen phosphorylase and glyceraldehyde-3-phosphate dehydrogenase and also by diverting the glycolytic flux into the pentose phosphate pathway via activation of glucose-6-phosphate dehydrogenase towards the generation of NADPH rather than ATP. Moreover, RP4-encoding genes responsible for DNA transfer and replication (traI, traJ and trfAp), coupling (traG) and mating pair formation (traF and trbBp) were all significantly down-regulated after FNA treatment, indicating that the transfer apparatus required for plasmid processing and delivery was deactivated. By validating the inhibitory effects of FNA on conjugation in real wastewater, this study highlights a promising method for controlling the dissemination of ARGs in systems such as wastewater treatment plants.

Contrasting impact of elevated atmospheric CO2 on nitrogen cycle in eutrophic water with or without Eichhornia crassipes (Mart.) Solms

The elevation of atmospheric CO₂ is an inevitable trend that would lead to significant impact on the interrelated carbon and nitrogen cycles through microbial activities in the aquatic ecosystem. Eutrophication has become a common trophic state of inland waters throughout the world, but how the elevated CO₂ affects N cycles in such eutrophic water with algal bloom, and how vegetative restoration helps to mitigate N₂O emission remains unknown. We conducted the experiments to investigate the effects of ambient and elevated atmospheric CO₂ (a[CO₂], e[CO₂]; 400, 800 μmol﹒mol^-1) with and without the floating aquatic plant, Eichhornia crassipes (Mart.) Solms, on N-transformation in eutrophic water using the ¹⁵N tracer method. The nitrification could be slightly inhibited by e[CO₂], due mainly to the competition for dissolved inorganic carbon between algae and nitrifiers. The e[CO₂] promoted denitrification and N₂O emissions from eutrophic water without growth of plants, leading to aggravation of greenhouse effect and forming a vicious cycle. However, growth of the aquatic plant, Eichhornia crassipes, slightly promoted nitrification, but reduced N₂O emissions from eutrophic water under e[CO₂] conditions, thereby attenuating the negative effect of e[CO₂] on N₂O emissions. In the experiment, the N transformation was influenced by many factors such as pH, DO and algae density, except e[CO₂] and plant presence. The pH could be regulated through diurnal photosynthesis and respiration of algae and mitigated the acidification of water caused by e[CO₂], leading to an appropriate pH range for both nitrifying and denitrifying microbes. Algal respiration at night could consume DO and enhance abundance of denitrifying functional genes (nirK, nosZ) in water, which was also supposed to be a critical factor affecting denitrification and N₂O emissions. This study clarifies how the greenhouse effect caused by e[CO₂] mediates N biogeochemical cycle in the aquatic ecosystem, and how vegetative restoration mitigates greenhouse gas emission.

Effects of elevated carbon dioxide on environmental microbes and its mechanisms: A review

Before the industrial revolution, the atmospheric CO₂ concentration was 180-330 ppm; however, fossil-fuel combustion and forest destruction have led to increased atmospheric CO₂ concentration. CO₂ capture and storage is regarded as a promising strategy to prevent global warming and ocean acidification and to alleviate elevated atmospheric CO₂ concentration, but the leakage of CO₂ from storage system can lead to rapid acidification of the surrounding circumstance, which might cause negative influence on environmental microbes. The effects of elevated CO₂ on microbes have been reported extensively, but the review regarding CO₂ affecting different environmental microorganisms has never been done previously. Also, the mechanisms of CO₂ affecting environmental microorganisms are usually contributed to the change of pH values, while the direct influences of CO₂ on microorganisms were often neglected. This paper aimed to provide a systematic review of elevated CO₂ affecting environmental microbes and its mechanisms. Firstly, the influences of elevated CO₂ and potential leakage of CO₂ from storage sites on community structures and diversity of different surrounding environmental microbes were assessed and compared. Secondly, the adverse impacts of CO₂ on microbial growth, cell morphology and membranes, bacterial spores, and microbial metabolism were introduced. Then, based on biochemical principles and knowledge of microbiology and molecular biology, the fundamental mechanisms of the influences of carbon dioxide on environmental microbes were discussed from the aspects of enzyme activity, electron generation and transfer, and key gene and protein expressions. Finally, key questions relevant to the environmental effect of CO₂ that need to be answered in the future were addressed.

Highly efficient nitrate removal in a heterotrophic denitrification system amended with redox-active biochar: A molecular and electrochemical mechanism

Biochar is widely used in water treatment because of its porous structure, however, the effects of biochars on denitrification remain unclear. Here, we combined molecular biological and electrochemical techniques to investigate effects of biochars (formed at 300 °C, 500 °C and 800 °C) on denitrification. Results showed that biochar at 300 °C increased total nitrogen removal by 415% and decreased N₂O accumulation by 78%. Mechanistic research demonstrated that it achieved the highest electron transfer efficiency and denitrifying enzyme activities. Further study evidenced that biochar at 300 °C increased the abundance of denitrifiers such as Pseudomonas. Correlation analysis indicated that nitrate reductase and nitrite reductase activities were the key factors influenced by biochar during denitrification. Overall, this study suggested that biochar at 300 °C could act as the bio-engineer of electron shuttle and the stimulator of denitrification, achieving high rate nitrogen removal and significant reduction of N₂O accumulation from high-strength wastewater.

Impacts of chlorothalonil on denitrification and N2O emission in riparian sediments: Microbial metabolism mechanism

Riparian zones can receive large amounts of nitrate, potentially contributing to water pollution. Denitrification is a major pathway to remove nitrate. Previous research on riparian denitrification focused on natural factors, but frequently neglected the roles of human activity, such as pesticide accumulations. Here, we combined field investigations and exposure experiments to reveal the responses of denitrification and N₂O emission to chlorothalonil (CTN, a common pesticide) in column experiments with riparian sediments. In this study, CTN inhibited denitrification and led to nitrate accumulation in sediments. Furthermore, CTN significantly increased N₂O emission by 208-377%, and this response was regulated by N₂O reductase (NOS) activity rather than nosZ abundance. A mechanistic study indicated that the critical step (glyceraldehyde-3-phosphate to 3-phosphogylcerate) catalyzed by glyceraldehyde-3-phosphate dehydrogenase during microbial metabolism greatly influenced denitrification in CTN-polluted sediments. Our data also revealed that CTN declined electron donor NADH, electron transport system, and denitrifying enzyme activities during denitrification. Such responses suggested that CTN deteriorated sediment denitrification by inhibiting electron production, transport and consumption in denitrifiers. Additionally, structure equation modeling indicated that NOS was the key factor in predicting denitrification rate in CTN-polluted sediments. Overall, this is the first study to explore the effects of pesticide on denitrification and N₂O emission in riparian zones at microbial metabolism level. Our results suggest that the safety threshold of CTN accumulation for inhibiting sediment denitrification is approximately 2 mg kg^-1, and imply that the wide presence of pesticides in riparian zones could impact eutrophication control of aquatic ecosystems.

Effect of Fe(II) on reactivity of heterotrophic denitrifiers in the remediation of nitrate- and Fe(II)-contaminated groundwater

Heterotrophic denitrifiers, capable of simultaneous nitrate reduction and Fe(II) oxidation, can be applied for the remediation of nitrate and Fe(II) combined contamination in groundwater. Under strictly anaerobic condition, denitrifying microbial communities were enriched with the coexistence of soluble nitrate, Fe(II) and associated nutrient elements to monitor the denitrification process. Low abundance of Fe(II) (e.g., 10 mg L^-1 in this study) tended to stimulate the activity of denitrifying microbial communities. However, elevated Fe(II) concentration (50 and 100 mg L^-1 in this study), acted as a stress, strongly inhibited the activity and reproduction of denitrifiers. Besides, through thermodynamics calculations, methanol rather than Fe(II) was proved to be the preferable electron donors for both energy metabolism and anabolism. Betaproteobacteria was found to be the most predominant (sub)phylum in all enriched microbial assemblages. Methylovesartilis was the most predominant group mainly catalyzed for methanol based denitrification, and others denitrifiers included Methylophilaceae, Dechloromonas and Denitratisoma. Excessive Fe(II) in the solution greatly reduced the proportions of these denitrifying groups, while the influence seemed to be less apparent on functional genes composition. As such, a conceptional metabolism pathway of the most dominant genus (i.e., Methylovesartilis) for nitrate reducing as well as methanol and Fe(II) oxidation confirmed that biotic nitrate reducing and Fe(II) oxidizing were potentially proceeded in cytoplasm by enzymes such as NarGHI. The Fe(II) oxidation rate depended on the rate of Fe(II) entering into the cell. These findings provide a clear mechanistic understanding of heterotrophic denitrification coupling with Fe(II) oxidation, and environmental implication for the bioremediation of nitrate and Fe(II) contaminated groundwater.

Insight into a direct carbon dioxide effect on denitrification and denitrifying bacterial communities in estuarine sediment

With the elevation of atmospheric CO₂ content, the potential effects of CO₂ on organisms and various environmental processes have gained increasing concern. Most previous studies on denitrification have been conducted on ecosystems comprising plants, soils and microbes, but they have ignored the direct effect of CO₂ on denitrification and denitrifying bacterial communities. Here, by excluding the effects of plants, we found that both short- and long-term exposure to CO₂ directly inhibited the denitrification process, and caused the total nitrogen removal efficiency to decrease by up to 37%. Compared with the control, long-term exposure to CO₂ (30,000 ppm) also caused >276-fold increase in N₂O emissions, and significantly inhibited the decomposition process. Enzymatic and qPCR assays showed that CO₂ decreased the denitrifying enzymes activity (DEA) and the copy numbers of denitrifying genes, which directly resulted in the inhibitory effect of CO₂ on denitrification process. Further study indicated that adverse effect of CO₂ on DEA and denitrifying genes were caused by reducing the relative abundance of denitrifying bacteria. Moreover, the relative abundance of fermenting bacteria also decreased as CO₂ concentration increased, which might result in insufficient liable carbon for the activity of denitrifying bacteria, and ultimately exacerbate the negative denitrification performance. Overall, this study suggests that, in the absence of plants, CO₂ could directly affect the denitrifying and fermenting bacterial community, and inhibit denitrification and decomposition processes, which is detrimental to sediment nitrogen and carbon cycles.

Self-Damaging Aerobic Reduction of Graphene Oxide by Escherichia coli: Role of GO-Mediated Extracellular Superoxide Formation

Microbial reduction of graphene oxide (GO) under aerobic conditions is poorly understood despite its critical role in changing GO toxicity and environmental fate. Here we show that 20 mg/L GO interacts with the membrane-bound cytochrome c of E. coli in saline, shuttling electrons from the respiratory chain to extracellular molecular oxygen. This results in the formation of superoxide anions (O₂^•-), which in turn reduce GO in 30 min. The critical role of superoxide was demonstrated by impeding GO reduction upon addition of superoxide dismutase, or by carrying out experiments under strictly anaerobic conditions that preclude O₂^•- formation. Coating GO with bovine serum albumin also stopped GO reduction, which indicates the need for direct contact between GO and the cell membrane. Cell death was observed as a consequence of GO bioreduction. Apparently, electron shuttling by GO (via membrane contact) interrupts the respiratory chain and induces oxidative stress, as indicated by a 20% decrease in electron transport activity and an increase in intracellular reactive oxygen species. This novel antimicrobial mechanism could be relevant to assess GO stability and biocompatibility, and informs potential applications for microbial control.

The response of the marine nitrogen cycle to ocean acidification

Ocean acidification (OA), arising from the influx of anthropogenically generated carbon, poses a massive threat to the ocean ecosystems. Our knowledge of the effects of elevated anthropogenic CO₂ in marine waters and its effect on the performance of single species, trophic interactions, and ecosystems is increasing rapidly. However, our understanding of the biogeochemical cycling of nutrients such as nitrogen is less advanced and lacks a comprehensive overview of how these processes may change under OA. We conducted a systematic review and meta-analysis of eight major nitrogen transformation processes incorporating 49 publications to synthesize current scientific understanding of the effect of OA on nitrogen cycling in the future ocean by 2100. The following points were identified by our meta-analysis: (a) Diazotrophic nitrogen fixation is likely enhanced by 29% ± 4% under OA; (b) species- and strain-specific responses of nitrogen fixers to OA were detectable, which may result in alterations in microbial community composition in the future ocean; (c) nitrification processes were reduced by a factor of 29% ± 10%; (d) declines in nitrification rates were not reflected by nitrifier abundance; and (e) contrasting results in unispecific culture experiments versus natural communities were apparent for nitrogen fixation and denitrification. The net effect of the nitrogen cycle process responses also suggests there may be a shift in the relative nitrogen pools, with excess ammonium originating from CO₂ -fertilized diazotrophs. This regenerated inorganic nitrogen may recycle in the upper water column increasing the relative importance of the ammonium-fueled regenerated production. However, several feedback mechanisms with other chemical cycles, such as oxygen, and interaction with other climate change stressors may counteract these findings. Finally, our review highlights the shortcomings and gaps in current understanding of the potential changes in nitrogen cycling under future climate and emphasizes the need for further ecosystem studies.

Acute response of soil denitrification and N2O emissions to chlorothalonil: A comprehensive molecular mechanism

The fungicide chlorothalonil (CHT) has been widely used in the tea orchard due to its high-efficiency and sterilization. It has been reported that repeated application of CHT inhibits soil nitrification process. However, the acute impact of CHT on soil denitrification and associated N₂O emissions is unclear. This study evaluated nitrate (NO₃^-) removal, denitrifying gene abundance and denitrifying enzyme activity of tea orchard soil after a 72-h-exposure to CHT. It was found that increasing CHT from 5 to 25 mg kg^-1 suppressed the NO₃^- removal efficiency from 74.6% to 54.1%, but increased N₂O emissions from 23.1% to 94.8%. Following treatment with 25 mg kg^-1 of CHT, the abundances of the nirK, nirS and nosZ genes were reduced by 31.6%, 22.1%, and 50.7%, respectively. Alternatively, the declines of the electron transport system activity (ETSA) value and adenosine triphosphate (ATP) content suggested that CHT had an inhibitory effect on microbial metabolism. Enzyme activity studies further revealed that the decrease of nitrate reductase (NAR), nitrite reductase (NIR) and nitric oxide reductase (NOR) activities was the main reason for the suppression of denitrification by CHT. Furthermore, positive correlations were observed between denitrifying reductase activity and the intracellular metabolism, indicating that the decrease in microbial metabolism should also be responsible for the inhibitory effect of CHT on the denitrifying process. Overall, it was found that the acute exposure of soil to CHT could inhibit the denitrification process and significantly increase N₂O emissions, which might result in destruction of the soil nitrogen cycle and exacerbation of global warming.

Inhibition of 1, 4-dioxane on the denitrification process by altering the viability and metabolic activity of Paracoccus denitrificans

1,4-Dioxane is an emerging pollutant, which widely exists in natural environments and poses potential risks to the living organisms. However, its effect on the denitrification process is still unknown. In this study, the effects of 1,4-dioxane on the denitrification process were therefore investigated by using Paracoccus denitrificans as the model denitrifier. The obtained results showed that the exposure of 1,4-dioxane exhibited remarkable lag or inhibition on the denitrification process, especially with high dose. In the control without 1,4-dioxane exposure, Paracoccus denitrificans showed high denitrification efficiency (98.5%). However, the efficiency decreased to 78.5, 63.9, and 9.3% with 0.50, 0.75, and 1.0% (v/v) 1,4-dioxane dose, respectively. The dose-induced inhibition of denitrification by 1,4-dioxane could be partially attributed to the negative effects on proliferation and viability of functional microorganisms by conjugating and disrupting the cell membranes. Furthermore, 1,4-dioxane caused biotoxicity to the intracellular activities of denitrifiers via disturbing carbon source utilization and interfering the key enzymes responsible for glycolysis. The decrease of microbial viability and activity inevitably resulted in the decline of key enzymes (NAR, NIR, NOR, and N₂OR) closely related with denitrification process, which could be the direct reason for the decrease of denitrification performance.

Role and application of iron in water treatment for nitrogen removal: A review

It is crucial to have a review on the role of iron in water treatment for the guidance towards the selection of appropriate processes, content of iron, and application conditions, as there are few reviews available at present and the systematic information is lacking for both researchers and engineers. The objectives of this review are to summarize the state of arts with respect to iron applied in nitrogen removal, discuss chemical and biological or bio-chemical combined nitrogen removal pathways and processes coupled with iron, and to reveal reaction mechanisms as well as providing references or even solutions to pertinent the practical engineering application of nitrate removal coupling with iron. The following information have been summarized and discussed in details: (1) iron based materials with varieties of preparations and forms, (2) major coupling ways of nitrogen removal methods or processes with iron application, (3) chemical reaction equations about a variety of chemical and biological or bio-chemical combined processes and the main mechanisms. In addition, challenges and/or drawbacks during the nitrogen removal processes will also be discussed in this paper, which is aimed to seek better practical engineering applications of nitrate removal coupling with iron.

Effect of CO2 on NADH production of denitrifying microbes via inhibiting carbon source transport and its metabolism

The potential effect of CO₂ on environmental microbes has drawn much attention recently. As an important section of the nitrogen cycle, biological denitrification requires electron donor to reduce nitrogen oxide. Nicotinamide adenine dinucleotide (NADH), which is formed during carbon source metabolism, is a widely reported electron donor for denitrification. Here we studied the effect of CO₂ on NADH production and carbon source utilization in the denitrifying microbe Paracoccus denitrificans. We observed that NADH level was decreased by 45.5% with the increase of CO₂ concentration from 0 to 30,000ppm, which was attributed to the significantly decreased utilization of carbon source (i.e., acetate). Further study showed that CO₂ inhibited carbon source utilization because of multiple negative influences: (1) suppressing the growth and viability of denitrifier cells, (2) weakening the driving force for carbon source transport by decreasing bacterial membrane potential, and (3) downregulating the expression of genes encoding key enzymes involved in intracellular carbon metabolism, such as citrate synthase, aconitate hydratase, isocitrate dehydrogenase, succinate dehydrogenase, and fumarate reductase. This study suggests that the inhibitory effect of CO₂ on NADH production in denitrifiers might deteriorate the denitrification performance in an elevated CO₂ climate scenario.

Impact of electro-stimulation on denitrifying bacterial growth and analysis of bacterial growth kinetics using a modified Gompertz model in a bio-electrochemical denitrification reactor

This study aimed to investigate the effect of electro-stimulation on denitrifying bacterial growth in a bio-electrochemical reactor, and the growth were modeled using modified Gompertz model under different current densities at three C/Ns. It was found that the similar optimum current density of 250mA/m² was obtained at C/N=0.75, 1.00 and 1.25, correspondingly the maximum nitrate removal efficiencies were 98.0%, 99.2% and 99.9%. Moreover, ATP content and cell membrane permeability of denitrifying bacteria were significantly increased at optimum current density. Furthermore, modified Gompertz model fitted well with the microbial growth curves, and the highest maximum growth rates (µ_max) and shorter lag time were obtained at the optimum current density for all C/Ns. This study demonstrated that the modified Gompertz model could be used for describing microbial growth under different current densities and C/Ns in a bio-electrochemical denitrification reactor, and it provided an alternative for improving the performance of denitrification process.