151
|
Salinity Effects on Morpho-Physiological and Yield Traits of Soybean ( Glycine max L.) as Mediated by Foliar Spray with Brassinolide. PLANTS 2021; 10:plants10030541. [PMID: 33805623 PMCID: PMC8000651 DOI: 10.3390/plants10030541] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 02/25/2021] [Accepted: 03/09/2021] [Indexed: 11/28/2022]
Abstract
Salinity episodes that are common in arid regions, characterized by dryland, are adversely affecting crop production worldwide. This study evaluated the effectiveness of brassinolide (BL) in ameliorating salinity stress imposed on soybean at four levels (control (1.10), 32.40, 60.60 and 86.30 mM/L NaCl) in factorial combination with six BL application frequency (control (BL0), application at seedling (BL1), flowering (BL2), podding (BL3), seedling + flowering (BL4) and seedling + flowering + podding (BL5)) stages. Plant growth attributes, seed yield, and N, P, K, Ca and Mg partitioning to leaves, stems and roots, as well as protein and seed-N concentrations, were significantly (p ≤ 0.05) reduced by salinity stress. These trends were ascribed to considerable impairments in the photosynthetic pigments, photosynthetically active radiation, leaf stomatal conductance and relative water content in the leaves of seedlings under stress. The activity of peroxidase and superoxidase significantly (p ≤ 0.05) increased with salinity. Foliar spray with BL significantly (p ≤ 0.05) improved the photosynthetic attributes, as well as nutrient partitioning, under stress, and alleviated ion toxicity by maintaining a favourable K+/Na+ ratio and decreasing oxidative damage. Foliar spray with brassinolide could sustain soybean growth and seed yield at salt concentrations up to 60.60 mM/L NaCl.
Collapse
|
152
|
Liu D, Hu R, Zhang J, Guo HB, Cheng H, Li L, Borland AM, Qin H, Chen JG, Muchero W, Tuskan GA, Yang X. Overexpression of an Agave Phospho enolpyruvate Carboxylase Improves Plant Growth and Stress Tolerance. Cells 2021; 10:582. [PMID: 33800849 PMCID: PMC7999111 DOI: 10.3390/cells10030582] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 02/16/2021] [Accepted: 02/18/2021] [Indexed: 12/29/2022] Open
Abstract
It has been challenging to simultaneously improve photosynthesis and stress tolerance in plants. Crassulacean acid metabolism (CAM) is a CO2-concentrating mechanism that facilitates plant adaptation to water-limited environments. We hypothesized that the ectopic expression of a CAM-specific phosphoenolpyruvate carboxylase (PEPC), an enzyme that catalyzes primary CO2 fixation in CAM plants, would enhance both photosynthesis and abiotic stress tolerance. To test this hypothesis, we engineered a CAM-specific PEPC gene (named AaPEPC1) from Agave americana into tobacco. In comparison with wild-type and empty vector controls, transgenic tobacco plants constitutively expressing AaPEPC1 showed a higher photosynthetic rate and biomass production under normal conditions, along with significant carbon metabolism changes in malate accumulation, the carbon isotope ratio δ13C, and the expression of multiple orthologs of CAM-related genes. Furthermore, AaPEPC1 overexpression enhanced proline biosynthesis, and improved salt and drought tolerance in the transgenic plants. Under salt and drought stress conditions, the dry weight of transgenic tobacco plants overexpressing AaPEPC1 was increased by up to 81.8% and 37.2%, respectively, in comparison with wild-type plants. Our findings open a new door to the simultaneous improvement of photosynthesis and stress tolerance in plants.
Collapse
Affiliation(s)
- Degao Liu
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
- The Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Rongbin Hu
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
| | - Jin Zhang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
- The Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Hao-Bo Guo
- Department of Computer Science and Engineering, SimCenter, University of Tennessee Chattanooga, Chattanooga, TN 37403, USA; (H.-B.G.); (H.Q.)
| | - Hua Cheng
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
| | - Linling Li
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
| | - Anne M. Borland
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
- School of Natural and Environmental Science, Newcastle University, Newcastle upon Tyne NE1 7RU, UK
| | - Hong Qin
- Department of Computer Science and Engineering, SimCenter, University of Tennessee Chattanooga, Chattanooga, TN 37403, USA; (H.-B.G.); (H.Q.)
| | - Jin-Gui Chen
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
- The Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Wellington Muchero
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
- The Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Gerald A. Tuskan
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
- The Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Xiaohan Yang
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; (D.L.); (R.H.); (J.Z.); (H.C.); (L.L.); (A.M.B.); (J.-G.C.); (W.M.); (G.A.T.)
- The Center for Bioenergy Innovation (CBI), Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| |
Collapse
|
153
|
Transcriptional profiling of two contrasting genotypes uncovers molecular mechanisms underlying salt tolerance in alfalfa. Sci Rep 2021; 11:5210. [PMID: 33664362 PMCID: PMC7933430 DOI: 10.1038/s41598-021-84461-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 02/12/2021] [Indexed: 11/22/2022] Open
Abstract
Alfalfa is an important forage crop that is moderately tolerant to salinity; however, little is known about its salt-tolerance mechanisms. We studied root and leaf transcriptomes of a salt-tolerant (G03) and a salt-sensitive (G09) genotype, irrigated with waters of low and high salinities. RNA sequencing led to 1.73 billion high-quality reads that were assembled into 418,480 unigenes; 35% of which were assigned to 57 Gene Ontology annotations. The unigenes were assigned to pathway databases for understanding high-level functions. The comparison of two genotypes suggested that the low salt tolerance index for transpiration rate and stomatal conductance of G03 compared to G09 may be due to its reduced salt uptake under salinity. The differences in shoot biomass between the salt-tolerant and salt-sensitive lines were explained by their differential expressions of genes regulating shoot number. Differentially expressed genes involved in hormone-, calcium-, and redox-signaling, showed treatment- and genotype-specific differences and led to the identification of various candidate genes involved in salinity stress, which can be investigated further to improve salinity tolerance in alfalfa. Validation of RNA-seq results using qRT-PCR displayed a high level of consistency between the two experiments. This study provides valuable insight into the molecular mechanisms regulating salt tolerance in alfalfa.
Collapse
|
154
|
Application of Genomics to Understand Salt Tolerance in Lentil. Genes (Basel) 2021; 12:genes12030332. [PMID: 33668850 PMCID: PMC7996261 DOI: 10.3390/genes12030332] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Revised: 02/19/2021] [Accepted: 02/22/2021] [Indexed: 02/07/2023] Open
Abstract
Soil salinity is a major abiotic stress, limiting lentil productivity worldwide. Understanding the genetic basis of salt tolerance is vital to develop tolerant varieties. A diversity panel consisting of 276 lentil accessions was screened in a previous study through traditional and image-based approaches to quantify growth under salt stress. Genotyping was performed using two contrasting methods, targeted (tGBS) and transcriptome (GBS-t) genotyping-by-sequencing, to evaluate the most appropriate methodology. tGBS revealed the highest number of single-base variants (SNPs) (c. 56,349), and markers were more evenly distributed across the genome compared to GBS-t. A genome-wide association study (GWAS) was conducted using a mixed linear model. Significant marker-trait associations were observed on Chromosome 2 as well as Chromosome 4, and a range of candidate genes was identified from the reference genome, the most plausible being potassium transporters, which are known to be involved in salt tolerance in related species. Detailed mineral composition performed on salt-treated and control plant tissues revealed the salt tolerance mechanism in lentil, in which tolerant accessions do not transport Na+ ions around the plant instead localize within the root tissues. The pedigree analysis identified two parental accessions that could have been the key sources of tolerance in this dataset.
Collapse
|
155
|
Nakhla WR, Sun W, Fan K, Yang K, Zhang C, Yu S. Identification of QTLs for Salt Tolerance at the Germination and Seedling Stages in Rice. PLANTS (BASEL, SWITZERLAND) 2021; 10:428. [PMID: 33668277 PMCID: PMC7996262 DOI: 10.3390/plants10030428] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Revised: 02/08/2021] [Accepted: 02/19/2021] [Indexed: 11/30/2022]
Abstract
Rice is highly sensitive to salinity stress during the seedling establishment phase. Salt stress is widely occurring in cultivated areas and severely affects seed germination ability and seedling establishment, which may result in a complete crop failure. The objective of the present study is to identify quantitative trait loci (QTLs) related to salt tolerance of the germination and seedling stages in a rice backcross inbred line (BIL) population that was derived from a backcross of an Africa rice ACC9 as donor and indica cultivar Zhenshan97 (ZS97) as the recurrent parent. Under salt stress, ACC9 exhibited a higher germination percentage, but more repressed seedling growth than ZS97. Using the BIL population, 23 loci for germination parameters were detected at the germination stage and 46 loci were identified for several morphological and physiological parameters at the seedling stage. Among them, nine and 33 loci with the ACC9 alleles increased salt tolerance at the germination and seedling stages, respectively. Moreover, several major QTLs were found to be co-localized in the same or overlapping regions of previously reported genes for salt stress. These major loci will facilitate improving salt-tolerance rice in genome-breeding programs.
Collapse
Affiliation(s)
- Walid Raafat Nakhla
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; (W.R.N.); (W.S.); (K.F.); (K.Y.); (C.Z.)
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Wenqiang Sun
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; (W.R.N.); (W.S.); (K.F.); (K.Y.); (C.Z.)
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Kai Fan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; (W.R.N.); (W.S.); (K.F.); (K.Y.); (C.Z.)
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Kang Yang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; (W.R.N.); (W.S.); (K.F.); (K.Y.); (C.Z.)
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Chaopu Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; (W.R.N.); (W.S.); (K.F.); (K.Y.); (C.Z.)
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Sibin Yu
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; (W.R.N.); (W.S.); (K.F.); (K.Y.); (C.Z.)
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| |
Collapse
|
156
|
Carbon Assimilation, Isotope Discrimination, Proline and Lipid Peroxidation Contribution to Barley ( Hordeum vulgare) Salinity Tolerance. PLANTS 2021; 10:plants10020299. [PMID: 33557417 PMCID: PMC7915033 DOI: 10.3390/plants10020299] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 01/27/2021] [Accepted: 01/29/2021] [Indexed: 11/17/2022]
Abstract
Barley (Hordeum vulgare L.) exhibits great adaptability to salt tolerance in marginal environments because of its great genetic diversity. Differences in main biochemical, physiological, and molecular processes, which could explain the different tolerance to soil salinity of 16 barley varieties, were examined during a two-year field experiment. The study was conducted in a saline soil with an electrical conductivity ranging from 7.3 to 11.5 dS/m. During the experiment, a number of different physiological and biochemical characteristics were evaluated when barley was at the two- to three-nodes growing stage (BBCH code 32–33). The results indicated that there were significant (p < 0.001) effects due to varieties for tolerance to salinity. Carbon isotopes discrimination was higher by 11.8% to 16.0% in salt tolerant varieties than that in the sensitive ones. Additionally, in the tolerant varieties, assimilation rates of CO2 and proline concentration were 200% and up to 67% higher than the sensitive varieties, respectively. However, in sensitive varieties, hydrogen peroxide and lipid peroxidation were enhanced, indicating an increased lipid peroxidation. The expression of the genes Hsdr4, HvA1, and HvTX1 did not differ among barley varieties tested. This study suggests that the increased carbon isotopes discrimination, increased proline concentration (play an osmolyte source role), and decreased lipid peroxidation are traits that are associated with barley tolerance to soil salinity. Moreover, our findings that proline improves salt tolerance by up-regulating stress-protective enzymes and reducing oxidation of lipid membranes will encourage our hypothesis that there are specific mechanisms that can be co-related with the salt sensitivity or the tolerance of barley. Therefore, further research is needed to ensure the tolerance mechanisms that exclude NaCl in salt tolerant barley varieties and diminish accumulation of lipid peroxides through adaptive plant responses.
Collapse
|
157
|
Kim JH, Jang CS. E3 ligase, the Oryza sativa salt-induced RING finger protein 4 (OsSIRP4), negatively regulates salt stress responses via degradation of the OsPEX11-1 protein. PLANT MOLECULAR BIOLOGY 2021; 105:231-245. [PMID: 33079323 DOI: 10.1007/s11103-020-01084-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 10/11/2020] [Indexed: 05/20/2023]
Abstract
OsSIRP4 is an E3 ligase that acts as a negative regulator in the plant response to salt stress via the 26S proteasomal system regulation of substrate proteins, OsPEX11-1, which it provides important information for adaptation and regulation in rice. Plants are sessile organisms that can be exposed to environmental stress. Plants alter their cellular processes to survive under potentially unfavorable conditions. Protein ubiquitination is an important post-translational modification that has a crucial role in various cellular signaling processes in abiotic stress response. In this study, we characterized Oryza sativa salt-induced RING finger protein 4, OsSIRP4, a membrane and cytosol-localized RING E3 ligase in rice. OsSIRP4 transcripts were highly induced under salt stress in rice. We found that OsSIRP4 possesses E3 ligase activity; however, no E3 ligase activity was observed with a single amino acid substitution (OsSIRP4C269A). The results of the yeast two hybrid system, in vitro pull-down assay, BiFC analysis, in vitro ubiquitination assay, and in vitro degradation assay indicate that OsSIRP4 regulates degradation of a substrate protein, OsPEX11-1 (Oryza sativa peroxisomal biogenesis factor 11-1) via the 26S proteasomal system. Phenotypic analysis of OsSIRP4-overexpressing plants demonstrated hypersensitivity to salt response compared to that of the wild type and mutated OsSIRP4C269A plants. In addition, OsSIRP4-overexpressing plants exhibited significant low enzyme activities of superoxide dismutase, catalase, and peroxidase, and accumulation of proline and soluble sugar, but a high level of H2O2. Furthermore, qRT data on transgenic plants suggest that OsSIRP4 acted as a negative regulator of salt response by diminishing the expression of genes related to Na+/K+ homeostasis (AtSOS1, AtAKT1, AtNHX1, and AtHKT1;1) in transgenic plants under salt stress. These results suggest that OsSIRP4 plays a negative regulatory role in response to salt stress by modulating the target protein levels.
Collapse
Affiliation(s)
- Ju Hee Kim
- Plant Genomics Laboratory, Department of Bio-Resources Sciences, Graduate School, Kangwon National University, Chuncheon, 200-713, South Korea
| | - Cheol Seong Jang
- Plant Genomics Laboratory, Department of Bio-Resources Sciences, Graduate School, Kangwon National University, Chuncheon, 200-713, South Korea.
| |
Collapse
|
158
|
Razi K, Muneer S. Drought stress-induced physiological mechanisms, signaling pathways and molecular response of chloroplasts in common vegetable crops. Crit Rev Biotechnol 2021; 41:669-691. [PMID: 33525946 DOI: 10.1080/07388551.2021.1874280] [Citation(s) in RCA: 63] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Drought stress is one of the most adverse abiotic stresses that hinder plants' growth and productivity, threatening sustainable crop production. It impairs normal growth, disturbs water relations and reduces water-use efficiency in plants. However, plants have evolved many physiological and biochemical responses at the cellular and organism levels, in order to cope with drought stress. Photosynthesis, which is considered one of the most crucial biological processes for survival of plants, is greatly affected by drought stress. A gradual decrease in CO2 assimilation rates, reduced leaf size, stem extension and root proliferation under drought stress, disturbs plant water relations, reducing water-use efficiency, disrupts photosynthetic pigments and reduces the gas exchange affecting the plants adversely. In such conditions, the chloroplast, organelle responsible for photosynthesis, is found to counteract the ill effects of drought stress by its critical involvement as a sensor of changes occurring in the environment, as the first process that drought stress affects is photosynthesis. Beside photosynthesis, chloroplasts carry out primary metabolic functions such as the biosynthesis of starch, amino acids, lipids, and tetrapyroles, and play a central role in the assimilation of nitrogen and sulfur. Because the chloroplasts are central organelles where the photosynthetic reactions take place, modifications in their physiology and protein pools are expected in response to the drought stress-induced variations in leaf gas exchanges and the accumulation of ROS. Higher expression levels of various transcription factors and other proteins including heat shock-related protein, LEA proteins seem to be regulating the heat tolerance mechanisms. However, several aspects of plastid alterations, following a water deficit environment are still poorly characterized. Since plants adapt to various stress tolerance mechanisms to respond to drought stress, understanding mechanisms of drought stress tolerance in plants will lead toward the development of drought tolerance in crop plants. This review throws light on major droughts stress-induced molecular/physiological mechanisms in response to severe and prolonged drought stress and addresses the molecular response of chloroplasts in common vegetable crops. It further highlights research gaps, identifying unexplored domains and suggesting recommendations for future investigations.
Collapse
Affiliation(s)
- Kaukab Razi
- Horticulture and Molecular Physiology Lab, School of Agricultural Innovations and Advanced Learning, Vellore Institute of Technology, Vellore, Tamil Nadu, India.,School of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India
| | - Sowbiya Muneer
- Horticulture and Molecular Physiology Lab, School of Agricultural Innovations and Advanced Learning, Vellore Institute of Technology, Vellore, Tamil Nadu, India
| |
Collapse
|
159
|
Alqahtani M, Lightfoot DJ, Lemtiri‐Chlieh F, Bukhari E, Pardo JM, Julkowska MM, Tester M. The role of PQL genes in response to salinity tolerance in Arabidopsis and barley. PLANT DIRECT 2021; 5:e00301. [PMID: 33615113 PMCID: PMC7876507 DOI: 10.1002/pld3.301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Revised: 10/31/2020] [Accepted: 12/13/2020] [Indexed: 06/12/2023]
Abstract
While soil salinity is a global problem, how salt enters plant root cells from the soil solution remains underexplored. Non-selective cation channels (NSCCs) are suggested to be the major pathway for the entry of sodium ions (Na+), yet their genetic constituents remain unknown. Yeast PQ loop (PQL) proteins were previously proposed to encode NSCCs, but the role of PQLs in plants is unknown. The hypothesis tested in this research is that PQL proteins constitute NSCCs mediating some of the Na+ influx into the root, contributing to ion accumulation and the inhibition of growth in saline conditions. We identified plant PQL homologues, and studied the role of one clade of PQL genes in Arabidopsis and barley. Using heterologous expression of AtPQL1a and HvPQL1 in HEK293 cells allowed us to resolve sizable inwardly directed currents permeable to monovalent cations such as Na+, K+, or Li+ upon membrane hyperpolarization. We observed that GFP-tagged PQL proteins localized to intracellular membrane structures, both when transiently over-expressed in tobacco leaf epidermis and in stable Arabidopsis transformants. Expression of AtPQL1a, AtPQL1b, and AtPQL1c was increased by salt stress in the shoot tissue compared to non-stressed plants. Mutant lines with altered expression of AtPQL1a, AtPQL1b, and AtPQL1c developed larger rosettes in saline conditions, while altered levels of AtPQL1a severely reduced development of lateral roots in all conditions. This study provides the first step toward understanding the function of PQL proteins in plants and the role of NSCC in salinity tolerance.
Collapse
Affiliation(s)
- Mashael Alqahtani
- Division of Biological and Environmental Sciences and EngineeringKing Abdullah University of Science and TechnologyThuwalKingdom of Saudi Arabia
- Biology DepartmentPrincess Nourah Bint Abdul Rahman UniversityRiyadhKingdom of Saudi Arabia
| | - Damien J. Lightfoot
- Division of Biological and Environmental Sciences and EngineeringKing Abdullah University of Science and TechnologyThuwalKingdom of Saudi Arabia
| | - Fouad Lemtiri‐Chlieh
- Division of Biological and Environmental Sciences and EngineeringKing Abdullah University of Science and TechnologyThuwalKingdom of Saudi Arabia
- Department of NeuroscienceUniversity of Connecticut School of MedicineFarmingtonCTUSA
| | - Ebtihaj Bukhari
- Division of Biological and Environmental Sciences and EngineeringKing Abdullah University of Science and TechnologyThuwalKingdom of Saudi Arabia
| | - José M. Pardo
- Instituto de Bioquimica Vegetal y Fotosintesis (IBVF)Consejo Superior de Investigaciones Científicas (CSIC)University of SevilleSevilleSpain
| | - Magdalena M. Julkowska
- Division of Biological and Environmental Sciences and EngineeringKing Abdullah University of Science and TechnologyThuwalKingdom of Saudi Arabia
| | - Mark Tester
- Division of Biological and Environmental Sciences and EngineeringKing Abdullah University of Science and TechnologyThuwalKingdom of Saudi Arabia
| |
Collapse
|
160
|
Zhang J, Xiao Q, Guo T, Wang P. Effect of sodium chloride on the expression of genes involved in the salt tolerance of Bacillus sp. strain “SX4” isolated from salinized greenhouse soil. OPEN CHEM 2021. [DOI: 10.1515/chem-2020-0181] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Abstract
Salt stress is one of the important adverse conditions affecting bacterium growth. How bacteria isolated from greenhouse soil cope with salt stress and regulate the genes responsible for salt tolerance are still unclear. We conducted RNA transcriptome profiling of genes contributing to the salt tolerance of a Bacillus sp. strain (“SX4”) obtained from salinized soil. Results showed that NaCl effectively regulated the growth of “SX4” in terms of cell length and colony-forming unit number decrease. A total of 121 upregulated and 346 downregulated genes were detected under salt stress with reference to the control. The largest numbers of differential expression genes were 17 in carbon metabolism, 13 in the biosynthesis of amino acids, 10 in a two-component system, and 10 in ABC transporter pathways for adapting to salt stress. Our data revealed that cation, electron and transmembrane transport, and catalytic activity play important roles in the resistance of bacterial cells to salt ions. Single-nucleotide polymorphism and the mutation of base pair T:A to C:G play potential roles in the adaptation of “SX4” to high NaCl concentrations. The findings from this study provide new insights into the molecular mechanisms of strain “SX4” and will be helpful in promoting the application of salt-tolerant bacteria.
Collapse
Affiliation(s)
- Jian Zhang
- Institute of Horticulture, Anhui Academy of Agricultural Sciences , Nongke South Road 40# , Hefei , 230031, Anhui , China
- Key Laboratory of Genetic Improvement and Ecophysiology of Horticultural Crops , Hefei , 230031, Anhui , China
| | - Qingqing Xiao
- School of Biology, Food and Environment, Hefei University , Hefei , 230601, Anhui , China
| | - Tingting Guo
- Institute of Horticulture, Anhui Academy of Agricultural Sciences , Nongke South Road 40# , Hefei , 230031, Anhui , China
- School of Life Sciences, Anhui Agricultural University , Hefei , 230036, Anhui , China
| | - Pengcheng Wang
- Institute of Horticulture, Anhui Academy of Agricultural Sciences , Nongke South Road 40# , Hefei , 230031, Anhui , China
- Key Laboratory of Genetic Improvement and Ecophysiology of Horticultural Crops , Hefei , 230031, Anhui , China
| |
Collapse
|
161
|
Yadav B, Jogawat A, Lal SK, Lakra N, Mehta S, Shabek N, Narayan OP. Plant mineral transport systems and the potential for crop improvement. PLANTA 2021; 253:45. [PMID: 33483879 DOI: 10.1007/s00425-020-03551-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Accepted: 12/22/2020] [Indexed: 05/09/2023]
Abstract
Nutrient transporter genes could be a potential candidate for improving crop plants, with enhanced nutrient uptake leading to increased crop yield by providing tolerance against different biotic and abiotic stresses. The world's food supply is nearing a crisis in meeting the demands of an ever-growing global population, and an increase in both yield and nutrient value of major crops is vitally necessary to meet the increased population demand. Nutrients play an important role in plant metabolism as well as growth and development, and nutrient deficiency results in retarded plant growth and leads to reduced crop yield. A variety of cellular processes govern crop plant nutrient absorption from the soil. Among these, nutrient membrane transporters play an important role in the acquisition of nutrients from soil and transport of these nutrients to their target sites. In addition, as excess nutrient delivery has toxic effects on plant growth, these membrane transporters also play a significant role in the removal of excess nutrients in the crop plant. The key function provided by membrane transporters is the ability to supply the crop plant with an adequate level of tolerance against environmental stresses, such as soil acidity, alkalinity, salinity, drought, and pathogen attack. Membrane transporter genes have been utilized for the improvement of crop plants, with enhanced nutrient uptake leading to increased crop yield by providing tolerance against different biotic and abiotic stresses. Further understanding of the basic mechanisms of nutrient transport in crop plants could facilitate the advanced design of engineered plant crops to achieve increased yield and improve nutrient quality through the use of genetic technologies as well as molecular breeding. This review is focused on nutrient toxicity and tolerance mechanisms in crop plants to aid in understanding and addressing the anticipated global food demand.
Collapse
Affiliation(s)
- Bindu Yadav
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, India
| | - Abhimanyu Jogawat
- National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India
| | - Shambhu Krishan Lal
- ICAR- Indian Institute of Agricultural Biotechnology, Ranchi, Jharkhand, India
- International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Nita Lakra
- Department of Biotechnology, CCS HAU, Hisar, India
| | - Sahil Mehta
- International Centre for Genetic Engineering and Biotechnology, New Delhi, India
| | - Nitzan Shabek
- Department of Plant Biology, University of California, Davis, CA, USA
| | | |
Collapse
|
162
|
Sun T, Pei T, Yang L, Zhang Z, Li M, Liu Y, Ma F, Liu C. Exogenous application of xanthine and uric acid and nucleobase-ascorbate transporter MdNAT7 expression regulate salinity tolerance in apple. BMC PLANT BIOLOGY 2021; 21:52. [PMID: 33468049 PMCID: PMC7816448 DOI: 10.1186/s12870-021-02831-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Accepted: 01/07/2021] [Indexed: 05/05/2023]
Abstract
BACKGROUND Soil salinity is a critical threat to global agriculture. In plants, the accumulation of xanthine activates xanthine dehydrogenase (XDH), which catalyses the oxidation/conversion of xanthine to uric acid to remove excess reactive oxygen species (ROS). The nucleobase-ascorbate transporter (NAT) family is also known as the nucleobase-cation symporter (NCS) or AzgA-like family. NAT is known to transport xanthine and uric acid in plants. The expression of MdNAT is influenced by salinity stress in apple. RESULTS In this study, we discovered that exogenous application of xanthine and uric acid enhanced the resistance of apple plants to salinity stress. In addition, MdNAT7 overexpression transgenic apple plants showed enhanced xanthine and uric acid concentrations and improved tolerance to salinity stress compared with nontransgenic plants, while opposite phenotypes were observed for MdNAT7 RNAi plants. These differences were probably due to the enhancement or impairment of ROS scavenging and ion homeostasis abilities. CONCLUSION Our results demonstrate that xanthine and uric acid have potential uses in salt stress alleviation, and MdNAT7 can be utilized as a candidate gene to engineer resistance to salt stress in plants.
Collapse
Affiliation(s)
- Tingting Sun
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
- Beijing Academy of Forestry and Pomology Sciences, Beijing Engineering Research Center for Deciduous Fruit Trees, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (North China), Ministry of Agriculture and Rural Affairs, Beijing, 100093, People's Republic of China
| | - Tingting Pei
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Lulu Yang
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Zhijun Zhang
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Mingjun Li
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Yuerong Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China
| | - Fengwang Ma
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
| | - Changhai Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas/Shaanxi Key Laboratory of Apple, College of Horticulture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
| |
Collapse
|
163
|
Agro-Physiologic Responses and Stress-Related Gene Expression of Four Doubled Haploid Wheat Lines under Salinity Stress Conditions. BIOLOGY 2021; 10:biology10010056. [PMID: 33466713 PMCID: PMC7828821 DOI: 10.3390/biology10010056] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2020] [Revised: 01/06/2021] [Accepted: 01/08/2021] [Indexed: 12/18/2022]
Abstract
Simple Summary Productivity of wheat can be enhanced using salt-tolerant genotypes. However, the assessment of salt tolerance potential in wheat through agro-physiological traits and stress-related gene expression analysis could potentially minimize the cost of breeding programs and be a powerful way for the selection of the most salt-tolerant genotype. The study evaluated the salt tolerance potential of four doubled haploid lines of wheat and compared them with the check cultivar Sakha-93 using an extensive set of agro-physiologic parameters and salt-stress-related gene expressions. The results indicated that the five genotypes tested displayed reduction in all traits evaluated except the canopy temperature and electrical conductivity, which had the greatest decline occurring in the check cultivar and the least decline in DHL2. The genotypes DHL21 and DHL5 exhibited increased expression rate of salt-stress-related genes under salt stress conditions. The multiple linear regression model and path coefficient analysis showed a coefficient of determination of 0.93. Concluding, the number of spikelets, and/or number of kernels were identified to be unbiased traits for assessing wheat DHLs under salinity conditions, given their contribution and direct impact on the grain yield. Moreover, the two most salt-tolerant genotypes DHL2 and DHL21 can be useful as genetic resources for future breeding programs. Abstract Salinity majorly hinders horizontal and vertical expansion in worldwide wheat production. Productivity can be enhanced using salt-tolerant wheat genotypes. However, the assessment of salt tolerance potential in bread wheat doubled haploid lines (DHL) through agro-physiological traits and stress-related gene expression analysis could potentially minimize the cost of breeding programs and be a powerful way for the selection of the most salt-tolerant genotype. We used an extensive set of agro-physiologic parameters and salt-stress-related gene expressions. Multivariate analysis was used to detect phenotypic and genetic variations of wheat genotypes more closely under salinity stress, and we analyzed how these strategies effectively balance each other. Four doubled haploid lines (DHLs) and the check cultivar (Sakha93) were evaluated in two salinity levels (without and 150 mM NaCl) until harvest. The five genotypes showed reduced growth under 150 mM NaCl; however, the check cultivar (Sakha93) died at the beginning of the flowering stage. Salt stress induced reduction traits, except the canopy temperature and initial electrical conductivity, which was found in each of the five genotypes, with the greatest decline occurring in the check cultivar (Sakha-93) and the least decline in DHL2. The genotypes DHL21 and DHL5 exhibited increased expression rate of salt-stress-related genes (TaNHX1, TaHKT1, and TaCAT1) compared with DHL2 and Sakha93 under salt stress conditions. Principle component analysis detection of the first two components explains 70.78% of the overall variation of all traits (28 out of 32 traits). A multiple linear regression model and path coefficient analysis showed a coefficient of determination (R2) of 0.93. The models identified two interpretive variables, number of spikelets, and/or number of kernels, which can be unbiased traits for assessing wheat DHLs under salinity stress conditions, given their contribution and direct impact on the grain yield.
Collapse
|
164
|
Luo Q, Zheng Q, Hu P, Liu L, Yang G, Li H, Li B, Li Z. Mapping QTL for agronomic traits under two levels of salt stress in a new constructed RIL wheat population. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:171-189. [PMID: 32995899 DOI: 10.1007/s00122-020-03689-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 09/16/2020] [Indexed: 06/11/2023]
Abstract
QTL for 15 agronomic traits under two levels of salt stress in dry salinity field were mapped in a new constructed RIL population utilizing a Wheat55K SNP array. Furthermore, eight QTL were validated in a collected natural population. Soil salinity is one of the major abiotic stresses causing serious impact on crop growth, development and yield. As one of the three most important crops in the world, bread wheat (Triticum aestivum L.) is severely affected by salinity, too. In this study, an F7 recombinant inbred line (RIL) population derived from a cross between high-yield wheat cultivar Zhongmai 175 and salt-tolerant cultivar Xiaoyan 60 was constructed. The adult stage performances of the RIL population and their parent lines under low and high levels of salt stress were evaluated for three consecutive growing seasons. Utilizing a Wheat55K SNP array, a high-density genetic linkage map spinning 3250.71 cM was constructed. QTL mapping showed that 90 stable QTL for 15 traits were detected, and they were distributed on all wheat chromosomes except 4D, 6B and 7D. These QTL individually explained 2.34-32.43% of the phenotypic variation with LOD values ranging from 2.68 to 47.15. It was found that four QTL clusters were located on chromosomes 2D, 3D, 4B and 6A, respectively. Notably, eight QTL from the QTL clusters were validated in a collected natural population. Among them, QPh-4B was deduced to be an allele of Rht-B1. In addition, three kompetitive allele-specific PCR (KASP) markers derived from SNPs were successfully designed for three QTL clusters. This study provides an important base for salt-tolerant QTL (gene) cloning in wheat, and the markers, especially the KASP markers, will be useful for marker-assisted selection in salt-tolerant wheat breeding.
Collapse
Affiliation(s)
- Qiaoling Luo
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Qi Zheng
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China.
| | - Pan Hu
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Liqin Liu
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Guotang Yang
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hongwei Li
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Bin Li
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| | - Zhensheng Li
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100101, China
| |
Collapse
|
165
|
Al-Tamimi N, Oakey H, Tester M, Negrão S. Assessing Rice Salinity Tolerance: From Phenomics to Association Mapping. Methods Mol Biol 2021; 2238:339-375. [PMID: 33471343 DOI: 10.1007/978-1-0716-1068-8_23] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Rice is the most salt-sensitive cereal, suffering yield losses above 50% with soil salinity of 6 dS/m. Thus, understanding the mechanisms of rice salinity tolerance is key to address food security. In this chapter, we provide guidelines to assess rice salinity tolerance using a high-throughput phenotyping platform (HTP) with digital imaging at seedling/early tillering stage and suggest improved analysis methods using stress indices. The protocols described here also include computer scripts for users to improve their experimental design, run genome-wide association studies (GWAS), perform multi-testing corrections, and obtain the Manhattan plots, enabling the identification of loci associated with salinity tolerance. Notably, the computer scripts provided here can be used for any stress or GWAS experiment and independently of HTP.
Collapse
Affiliation(s)
- Nadia Al-Tamimi
- Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Helena Oakey
- School of Agriculture Food and Wine, University of Adelaide, Urrbrae, SA, Australia
| | - Mark Tester
- Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Sónia Negrão
- School of Biology and Environmental Science, University College Dublin, Belfield, Dublin 4, Ireland.
| |
Collapse
|
166
|
Devireddy AR, Zandalinas SI, Fichman Y, Mittler R. Integration of reactive oxygen species and hormone signaling during abiotic stress. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021; 105:459-476. [PMID: 33015917 DOI: 10.1111/tpj.15010] [Citation(s) in RCA: 133] [Impact Index Per Article: 44.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Revised: 09/16/2020] [Accepted: 09/21/2020] [Indexed: 05/03/2023]
Abstract
Each year, abiotic stress conditions such as drought, heat, salinity, cold and particularly their different combinations, inflict a heavy toll on crop productivity worldwide. The effects of these adverse conditions on plant productivity are becoming ever more alarming in recent years in light of the increased rate and intensity of global climatic changes. Improving crop tolerance to abiotic stress conditions requires a deep understanding of the response of plants to changes in their environment. This response is dependent on early and late signal transduction events that involve important signaling molecules such as reactive oxygen species (ROS), different plant hormones and other signaling molecules. It is the integration of these signaling events, mediated by an interplay between ROS and different plant hormones that orchestrates the plant response to abiotic stress and drive changes in transcriptomic, metabolic and proteomic networks that lead to plant acclimation and survival. Here we review some of the different studies that address hormone and ROS integration during the response of plants to abiotic stress. We further highlight the integration of ROS and hormone signaling during early and late phases of the plant response to abiotic stress, the key role of respiratory burst oxidase homologs in the integration of ROS and hormone signaling during these phases, and the involvement of hormone and ROS in systemic signaling events that lead to systemic acquired acclimation. Lastly, we underscore the need to understand the complex interactions that occur between ROS and different plant hormones during stress combinations.
Collapse
Affiliation(s)
- Amith R Devireddy
- Division of Plant Sciences, College of Agriculture, Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center University of Missouri, 1201 Rollins St, Columbia, MO, 65201, USA
| | - Sara I Zandalinas
- Division of Plant Sciences, College of Agriculture, Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center University of Missouri, 1201 Rollins St, Columbia, MO, 65201, USA
| | - Yosef Fichman
- Division of Plant Sciences, College of Agriculture, Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center University of Missouri, 1201 Rollins St, Columbia, MO, 65201, USA
| | - Ron Mittler
- Division of Plant Sciences, College of Agriculture, Food and Natural Resources, and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center University of Missouri, 1201 Rollins St, Columbia, MO, 65201, USA
- Department of Surgery, University of Missouri School of Medicine, Christopher S. Bond Life Sciences Center University of Missouri, 1201 Rollins St, Columbia, MO, 65211, USA
| |
Collapse
|
167
|
Asif MA, Garcia M, Tilbrook J, Brien C, Dowling K, Berger B, Schilling RK, Short L, Trittermann C, Gilliham M, Fleury D, Roy SJ, Pearson AS. Identification of salt tolerance QTL in a wheat RIL mapping population using destructive and non-destructive phenotyping. FUNCTIONAL PLANT BIOLOGY : FPB 2021; 48:131-140. [PMID: 32835651 DOI: 10.1071/fp20167] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2020] [Accepted: 07/31/2020] [Indexed: 06/11/2023]
Abstract
Bread wheat (Triticum aestivum L.) is one of the most important food crops, however it is only moderately tolerant to salinity stress. To improve wheat yield under saline conditions, breeding for improved salinity tolerance of wheat is needed. We have identified nine quantitative trail loci (QTL) for different salt tolerance sub-traits in a recombinant inbred line (RIL) population, derived from the bi-parental cross of Excalibur × Kukri. This population was screened for salinity tolerance subtraits using a combination of both destructive and non-destructive phenotyping. Genotyping by sequencing (GBS) was used to construct a high-density genetic linkage map, consisting of 3236 markers, and utilised for mapping QTL. Of the nine mapped QTL, six were detected under salt stress, including QTL for maintenance of shoot growth under salinity (QG(1-5).asl-5A, QG(1-5).asl-7B) sodium accumulation (QNa.asl-2A), chloride accumulation (QCl.asl-2A, QCl.asl-3A) and potassium:sodium ratio (QK:Na.asl-2DS2). Potential candidate genes within these QTL intervals were shortlisted using bioinformatics tools. These findings are expected to facilitate the breeding of new salt tolerant wheat cultivars.
Collapse
Affiliation(s)
- Muhammad A Asif
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Melissa Garcia
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Industrial Transformation Research Hub for Wheat in a Hot and Dry Climate, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia
| | - Joanne Tilbrook
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Chris Brien
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, SA 5064, Australia; and School of Information Technology and Mathematical Sciences, The University of South Australia, GPO Box 2471, Adelaide, SA 5001, Australia
| | - Kate Dowling
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, SA 5064, Australia
| | - Bettina Berger
- School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and Australian Plant Phenomics Facility, The Plant Accelerator, The University of Adelaide, SA 5064, Australia
| | - Rhiannon K Schilling
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Laura Short
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Christine Trittermann
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Matthew Gilliham
- School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Centre of Excellence in Plant Energy Biology, Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| | - Delphine Fleury
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Industrial Transformation Research Hub for Wheat in a Hot and Dry Climate, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia; and Innolea, 6 chemin de Panedautes, 31700, Mondonville, France
| | - Stuart J Roy
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Industrial Transformation Research Hub for Wheat in a Hot and Dry Climate, The University of Adelaide, PMB1, Glen Osmond, SA 5064, Australia; and Corresponding author.
| | - Allison S Pearson
- Australian Centre for Plant Functional Genomics, PMB 1, Glen Osmond, SA 5064, Australia; and School of Agriculture, Food and Wine & Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia; and ARC Centre of Excellence in Plant Energy Biology, Waite Research Institute, The University of Adelaide, PMB 1, Glen Osmond, SA 5064, Australia
| |
Collapse
|
168
|
Darko E, Khalil R, Dobi Z, Kovács V, Szalai G, Janda T, Molnár I. Addition of Aegilops biuncialis chromosomes 2M or 3M improves the salt tolerance of wheat in different way. Sci Rep 2020; 10:22327. [PMID: 33339903 PMCID: PMC7749180 DOI: 10.1038/s41598-020-79372-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Accepted: 12/04/2020] [Indexed: 11/09/2022] Open
Abstract
Aegilops biuncialis is a promising gene source to improve salt tolerance of wheat via interspecific hybridization. In the present work, the salt stress responses of wheat-Ae. biuncialis addition lines were investigated during germination and in young plants to identify which Aegilops chromosomes can improve the salt tolerance of wheat. After salt treatments, the Aegilops parent and the addition lines 2M, 3M and 3M.4BS showed higher germination potential, shoot and root growth, better CO2 assimilation capacity and less chlorophyll degradation than the wheat parent. The Aegilops parent accumulated less Na in the roots due to an up-regulation of SOS1, SOS2 and HVP1 genes, while it contained higher amount of proline, fructose, glucose, galactose, maltose and raffinose. In the leaves, lower Na level was accompanied by high amount of proline and increased expression of NHX2 gene. The enhanced accumulation of sugars and proline was also observed in the roots of 3M and 3M.4BS addition lines. Typical mechanism of 2M addition line was the sequestration of Na into the vacuole due to the increased expression of HVP1 in the roots and NHX2 in the leaves. These results suggest the Aegilops chromosomes 2M and 3M can improve salt tolerance of wheat in different way.
Collapse
Affiliation(s)
- Eva Darko
- Department of Plant Physiology, Centre for Agricultural Research, Agricultural Institute, Martonvásár, 2462, Hungary.
| | - Radwan Khalil
- Botany Department, Faculty of Science, Benha University, Benha, 13518, Egypt
| | - Zsanett Dobi
- Department of Plant Physiology, Centre for Agricultural Research, Agricultural Institute, Martonvásár, 2462, Hungary
| | - Viktória Kovács
- Department of Plant Physiology, Centre for Agricultural Research, Agricultural Institute, Martonvásár, 2462, Hungary
| | - Gabriella Szalai
- Department of Plant Physiology, Centre for Agricultural Research, Agricultural Institute, Martonvásár, 2462, Hungary
| | - Tibor Janda
- Department of Plant Physiology, Centre for Agricultural Research, Agricultural Institute, Martonvásár, 2462, Hungary
| | - István Molnár
- Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, 78371, Olomouc, Czech Republic.,Department of Plant Genetic Resources, Centre for Agricultural Research, Agricultural Institute, Martonvásár, 2462, Hungary
| |
Collapse
|
169
|
Geng W, Li Z, Hassan MJ, Peng Y. Chitosan regulates metabolic balance, polyamine accumulation, and Na + transport contributing to salt tolerance in creeping bentgrass. BMC PLANT BIOLOGY 2020; 20:506. [PMID: 33148164 PMCID: PMC7640404 DOI: 10.1186/s12870-020-02720-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Accepted: 10/26/2020] [Indexed: 05/04/2023]
Abstract
BACKGROUND Chitosan (CTS), a natural polysaccharide, exhibits multiple functions of stress adaptation regulation in plants. However, effects and mechanism of CTS on alleviating salt stress damage are still not fully understood. Objectives of this study were to investigate the function of CTS on improving salt tolerance associated with metabolic balance, polyamine (PAs) accumulation, and Na+ transport in creeping bentgrass (Agrostis stolonifera). RESULTS CTS pretreatment significantly alleviated declines in relative water content, photosynthesis, photochemical efficiency, and water use efficiency in leaves under salt stress. Exogenous CTS increased endogenous PAs accumulation, antioxidant enzyme (SOD, POD, and CAT) activities, and sucrose accumulation and metabolism through the activation of sucrose synthase and pyruvate kinase activities, and inhibition of invertase activity. The CTS also improved total amino acids, glutamic acid, and γ-aminobutyric acid (GABA) accumulation. In addition, CTS-pretreated plants exhibited significantly higher Na+ content in roots and lower Na+ accumulation in leaves then untreated plants in response to salt stress. However, CTS had no significant effects on K+/Na+ ratio. Importantly, CTS enhanced salt overly sensitive (SOS) pathways and also up-regulated the expression of AsHKT1 and genes (AsNHX4, AsNHX5, and AsNHX6) encoding Na+/H+ exchangers under salt stress. CONCLUSIONS The application of CTS increased antioxidant enzyme activities, thereby reducing oxidative damage to roots and leaves. CTS-induced increases in sucrose and GABA accumulation and metabolism played important roles in osmotic adjustment and energy metabolism during salt stress. The CTS also enhanced SOS pathway associated with Na+ excretion from cytosol into rhizosphere, increased AsHKT1 expression inhibiting Na+ transport to the photosynthetic tissues, and also up-regulated the expression of AsNHX4, AsNHX5, and AsNHX6 promoting the capacity of Na+ compartmentalization in roots and leaves under salt stress. In addition, CTS-induced PAs accumulation could be an important regulatory mechanism contributing to enhanced salt tolerance. These findings reveal new functions of CTS on regulating Na+ transport, enhancing sugars and amino acids metabolism for osmotic adjustment and energy supply, and increasing PAs accumulation when creeping bentgrass responds to salt stress.
Collapse
Affiliation(s)
- Wan Geng
- Department of Grassland Science, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Zhou Li
- Department of Grassland Science, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China.
| | - Muhammad Jawad Hassan
- Department of Grassland Science, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| | - Yan Peng
- Department of Grassland Science, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, China
| |
Collapse
|
170
|
Theerawitaya C, Samphumphuang T, Tisarum R, Siangliw M, Cha-Um S, Takabe T, Toojinda T. Expression level of Na + homeostasis-related genes and salt-tolerant abilities in backcross introgression lines of rice crop under salt stress at reproductive stage. PROTOPLASMA 2020; 257:1595-1606. [PMID: 32671620 DOI: 10.1007/s00709-020-01533-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2020] [Accepted: 07/01/2020] [Indexed: 06/11/2023]
Abstract
Salt stress in the rice field is one of the most common abiotic stresses, reducing crop productivity, especially at reproductive stage, which is very sensitive to salt stress. The aim of this investigation was to study mRNA-related Na+ uptake/translocation and Na+ enrichment in the cellular level, leading to physiological changes, growth characteristics, and yield attributes in FL530 [salt-tolerant genotype; carrying SKC1 (in relation to high-affinity potassium transporters controlling Na+ and K+ translocation) and qSt1b (linking to salt injury score) QTLs] and KDML105 (salt-sensitive cultivar; lacking both QTLs) parental lines and 221-48 (carrying SKC1 and qSt1b QTLs) derived from BILs (backcross introgression lines) at 50% flowering of rice, under 150-mM NaCl until harvesting process. The upregulation of OsHKT1;5 (mediating Na+ exclusion into xylem parenchyma cells) and OsNHX1 (Na+/H+ exchanger to secrete Na+ into vacuole) and downregulation of OsHKT2;1 and OsHKT2;2 (mediating Na+ restriction in the roots, leaf sheath and older leaves) in cvs. FL530 and 221-48 (+ SKC1; + qSt1b) under salt stress were observed. It restricted Na+ level in flag leaf, thereby preventing salt toxicity, as indicated by maintenance of photon yield of PSII (ΦPSII), net photosynthetic rate (Pn), transpiration rate (E) and overall growth performances. In contrast, Na+ enrichment in flag leaf of cv. KDML105 (-SKC1;-qSt1b) caused the reduction in ΦPSII by 30.5% over the control, leading to the reduction in Pn by 62.3%, in seed sterility by 88.2%, and yield loss by 85.1%. Moreover, the negative relationships between Na+ enrichment in flag leaf, physiological changes, and yield traits in rice crop grown under salt stress were demonstrated. Based on this investigation, rice genotype 221-48 was found to possess salt-tolerant traits at reproductive stage and thus could prove to be a potential candidate for future breeding programs.
Collapse
Affiliation(s)
- Cattarin Theerawitaya
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Thapanee Samphumphuang
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Rujira Tisarum
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
| | - Meechai Siangliw
- Rice Gene Discovery Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC, NSTDA), Kasetsart University, Kamphaeng Saen, Nakhon Pathom, 73140, Thailand
| | - Suriyan Cha-Um
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand.
| | - Teruhiro Takabe
- Research Institute, Meijo University, 1-501 Shiogamagushi, Tenpaku-ku, Nagoya, 468-8502, Japan
| | - Theerayut Toojinda
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Thailand Science Park, Paholyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand
- Rice Gene Discovery Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC, NSTDA), Kasetsart University, Kamphaeng Saen, Nakhon Pathom, 73140, Thailand
| |
Collapse
|
171
|
Zhang L, Chen L, Lu F, Liu Z, Lan S, Han G. Differentially expressed genes related to oxidoreductase activity and glutathione metabolism underlying the adaptation of Phragmites australis from the salt marsh in the Yellow River Delta, China. PeerJ 2020; 8:e10024. [PMID: 33072439 PMCID: PMC7537617 DOI: 10.7717/peerj.10024] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 09/02/2020] [Indexed: 12/11/2022] Open
Abstract
The common reed (Phragmites australis) is a dominant species in the coastal wetlands of the Chinese Yellow River Delta, where it tolerates a wide range of salinity. Recent environmental changes have led to the increase of soil salinity in this region, which has degraded much of the local vegetation. Clones of common reeds from the tidal marsh may have adapted to local high salinity habitat through selection on genes and metabolic pathways conferring salt tolerance. This study aims to reveal molecular mechanisms underlying salt tolerance in the tidal reed by comparing them to the salt-sensitive freshwater reed under salt stress. We employed comparative transcriptomics to reveal the differentially expressed genes (DEGs) between these two types of common reeds under different salinity conditions. The results showed that only three co-expressed genes were up-regulated and one co-expressed gene was down-regulated between the two reed types. On the other hand, 1,371 DEGs were exclusively up-regulated and 285 DEGs were exclusively down-regulated in the tidal reed compared to the control, while 115 DEGs were exclusively up-regulated and 118 DEGs were exclusively down-regulated in the freshwater reed compared to the control. From the pattern of enrichment of transcripts involved in salinity response, the tidal reed was more active and efficient in scavenging reactive oxygen species (ROS) than the freshwater reed, with the tidal reed showing significantly higher gene expression in oxidoreductase activity. Furthermore, when the reeds were exposed to salt stress, transcripts encoding glutathione metabolism were up-regulated in the tidal reed but not in the freshwater reed. DEGs related to encoding glutathione reductase (GR), glucose-6-phosphate 1-dehydrogenase (G6PDH), 6-phosphogluconate dehydrogenase (6PD), glutathione S-transferase (GST) and L-ascorbate peroxidase (LAP) were revealed as especially highly differentially regulated and therefore represented candidate genes that could be cloned into plants to improve salt tolerance. Overall, more genes were up-regulated in the tidal reed than in the freshwater reed from the Yellow River Delta when under salt stress. The tidal reed efficiently resisted salt stress by up-regulating genes encoding for oxidoreductase activity and glutathione metabolism. We suggest that this type of common reed could be extremely useful in the ecological restoration of degraded, high salinity coastal wetlands in priority.
Collapse
Affiliation(s)
- Liwen Zhang
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS); Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, China
| | - Lin Chen
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS); Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, China.,College of Environment and Planning, Liaocheng University, Liaocheng, China
| | - Feng Lu
- Administration Committee of Shandong Yellow River Delta National Nature Reserve, Dongying, China
| | - Ziting Liu
- College of Environment and Planning, Liaocheng University, Liaocheng, China
| | - Siqun Lan
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS); Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, China.,School of Resources and Environmental Engineering, Ludong University, Yantai, China
| | - Guangxuan Han
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS); Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, China
| |
Collapse
|
172
|
Metabolomics integrated with transcriptomics: assessing the central metabolism of marine red yeast Sporobolomyces pararoseus under salinity stress. Arch Microbiol 2020; 203:889-899. [PMID: 33074377 DOI: 10.1007/s00203-020-02082-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2019] [Revised: 09/07/2020] [Accepted: 10/01/2020] [Indexed: 10/23/2022]
Abstract
Salinity stress is one of the most serious environmental issues in agricultural regions worldwide. Excess salinity inhibits root growth of various crops, and results in reductions of yield. It is of crucial to understand the molecular mechanisms mediating salinity stress responses for enhancing crops' salt tolerance. Marine red yeast Sporobolomyces pararoseus should have evolved some unique salt-tolerant mechanism, because they long-term live in high-salt ecosystems. However, little research has conducted so far by considering S. pararoseus as model microorganisms to study salt-tolerant mechanisms. Here, we successfully integrated metabolomics with transcriptomic profiles of S. pararoseus in response to salinity stress. Screening of metabolite features with untargeted metabolic profiling, we characterized 4862 compounds from the LC-MS/MS-based datasets. The integrated results showed that amino acid metabolism, carbohydrate metabolism, and lipid metabolism is significantly enriched in response to salt stress. Co-expression network analysis showed that 28 genes and 8 metabolites play an important role in the response of S. pararoseus, which provides valuable clues for subsequent validation. Together, the results provide valuable information for assessing the central metabolism of mediating salt responses in S. pararoseus and offer inventories of target genes for salt tolerance improvement via genetic engineering.
Collapse
|
173
|
|
174
|
Alexander A, Singh VK, Mishra A. Halotolerant PGPR Stenotrophomonas maltophilia BJ01 Induces Salt Tolerance by Modulating Physiology and Biochemical Activities of Arachis hypogaea. Front Microbiol 2020; 11:568289. [PMID: 33162950 PMCID: PMC7591470 DOI: 10.3389/fmicb.2020.568289] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Accepted: 09/22/2020] [Indexed: 01/25/2023] Open
Abstract
Arachis hypogaea (Peanut) is one of the most important cash crops grown for food and oil production. Salinity is a major constraint for loss of peanut productivity, and halotolerant plant growth promoting bacteria not only enhance plant-growth but also provide tolerance against salt stress. The potential of halotolerant bacterium Stenotrophomonas maltophilia BJ01 isolated from saline-soil was explored to enhance the growth of peanut plants under salt stress conditions. Interaction of S. maltophilia BJ01 enhances the growth of the peanut plants and protects photosynthetic pigments under salt stress. Lower electrolyte leakage (about 20%), lipid peroxidation (2.1 μmol g-1 Fw), proline (2.9 μg mg-1 Fw) content and H2O2 (55 μmol g-1 Fw) content were observed in plants, co-cultivated with PGPR compared to untreated plants under stress condition. The growth hormone auxin (0.4 mg g-1 Fw) and total amino acid content (0.3 mg g-1 Fw) were enhanced in plants co-cultivated with PGPR under stress conditions. Overall, these results indicate the beneficial effect of S. maltophilia BJ01 on peanut plants under salt (100 mM NaCl) stress conditions. In conclusion, bacterium S. maltophilia BJ01 could be explored further as an efficient PGPR for growing legumes especially peanuts under salt stress conditions. However, a detailed agronomic study would be needed to ascertain its commercial role.
Collapse
Affiliation(s)
- Ankita Alexander
- Division of Applied Phycology and Biotechnology, CSIR – Central Salt and Marine Chemicals Research Institute, Bhavnagar, India
- Academy of Scientific and Innovative Research (AcSIR), CSIR, Ghaziabad, India
| | - Vijay K. Singh
- Division of Applied Phycology and Biotechnology, CSIR – Central Salt and Marine Chemicals Research Institute, Bhavnagar, India
| | - Avinash Mishra
- Division of Applied Phycology and Biotechnology, CSIR – Central Salt and Marine Chemicals Research Institute, Bhavnagar, India
- Academy of Scientific and Innovative Research (AcSIR), CSIR, Ghaziabad, India
| |
Collapse
|
175
|
Negi P, Pandey M, Dorn KM, Nikam AA, Devarumath RM, Srivastava AK, Suprasanna P. Transcriptional reprogramming and enhanced photosynthesis drive inducible salt tolerance in sugarcane mutant line M4209. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:6159-6173. [PMID: 32687570 DOI: 10.1093/jxb/eraa339] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 07/15/2020] [Indexed: 06/11/2023]
Abstract
Sugarcane (Saccharum officinarum) is a globally cultivated cash crop whose yield is negatively affected by soil salinity. In this study, we investigated the molecular basis of inducible salt tolerance in M4209, a sugarcane mutant line generated through radiation-induced mutagenesis. Under salt-contaminated field conditions, M4209 exhibited 32% higher cane yield as compared with its salt-sensitive parent, Co86032. In pot experiments, post-sprouting phenotyping indicated that M4209 had significantly greater leaf biomass compared with Co86032 under treatment with 50 mM and 200 mM NaCl. This was concomitant with M4209 having 1.9-fold and 1.6-fold higher K+/Na+ ratios, and 4-fold and 40-fold higher glutathione reductase activities in 50 mM and 200 mM NaCl, respectively, which suggested that it had better ionic and redox homeostasis than Co86032. Transcriptome profiling using RNA-seq indicated an extensive reprograming of stress-responsive modules associated with photosynthesis, transmembrane transport, and metabolic processes in M4209 under 50 mM NaCl stress. Using ranking analysis, we identified Phenylalanine Ammonia Lyase (PAL), Acyl-Transferase Like (ATL), and Salt-Activated Transcriptional Activator (SATA) as the genes most associated with salt tolerance in M4209. M4209 also exhibited photosynthetic rates that were 3-4-fold higher than those of Co86032 under NaCl stress conditions. Our results highlight the significance of transcriptional reprogramming coupled with improved photosynthetic efficiency in determining salt tolerance in sugarcane.
Collapse
Affiliation(s)
- Pooja Negi
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, India
- Homi Bhabha National Institute, Mumbai, India
| | - Manish Pandey
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, India
| | - Kevin M Dorn
- Department of Plant Biology, University of Minnesota, Saint Paul, MN, USA
| | - Ashok A Nikam
- Vasantdada Sugar Institute, Manjari Bk, Pune, Maharashtra, India
| | | | - Ashish K Srivastava
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, India
- Homi Bhabha National Institute, Mumbai, India
| | - Penna Suprasanna
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, India
- Homi Bhabha National Institute, Mumbai, India
| |
Collapse
|
176
|
Mansour E, Moustafa ESA, Desoky ESM, Ali MMA, Yasin MAT, Attia A, Alsuhaibani N, Tahir MU, El-Hendawy S. Multidimensional Evaluation for Detecting Salt Tolerance of Bread Wheat Genotypes Under Actual Saline Field Growing Conditions. PLANTS (BASEL, SWITZERLAND) 2020; 9:E1324. [PMID: 33036311 PMCID: PMC7601346 DOI: 10.3390/plants9101324] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 09/25/2020] [Accepted: 10/04/2020] [Indexed: 01/19/2023]
Abstract
Field-based trials and genotype evaluation until yielding stage are two important steps in improving the salt tolerance of crop genotypes and identifying what parameters can be strong candidates for the better understanding of salt tolerance mechanisms in different genotypes. In this study, the salt tolerance of 18 bread wheat genotypes was evaluated under natural saline field conditions and at three saline irrigation levels (5.25, 8.35, and 11.12 dS m-1) extracted from wells. Multidimensional evaluation for salt tolerance of these genotypes was done using a set of agronomic and physio-biochemical attributes. Based on yield index under three salinity levels, the genotypes were classified into four groups ranging from salt-tolerant to salt-sensitive genotypes. The salt-tolerant genotypes exhibited values of total chlorophyll, gas exchange (net photosynthetic rate, transpiration rate, and stomatal conductance), water relation (relative water content and membrane stability index), nonenzymatic osmolytes (soluble sugar, free proline, and ascorbic acid), antioxidant enzyme activities (superoxide dismutase, catalase, and peroxidase), K+ content, and K+/Na+ ratio that were greater than those of salt-sensitive genotypes. Additionally, the salt-tolerant genotypes consistently exhibited good control of Na+ and Cl- levels and maintained lower contents of malondialdehyde and electrolyte leakage under high salinity level, compared with the salt-sensitive genotypes. Several physio-biochemical parameters showed highly positive associations with grain yield and its components, whereas negative association was observed in other parameters. Accordingly, these physio-biochemical parameters can be used as individual or complementary screening criteria for evaluating salt tolerance and improvement of bread wheat genotypes under natural saline field conditions.
Collapse
Affiliation(s)
- Elsayed Mansour
- Agronomy Department, Faculty of Agriculture, Zagazig University, Zagazig 44519, Egypt; (E.M.); (M.M.A.A.); (M.A.T.Y.); (A.A.)
| | | | - El-Sayed M. Desoky
- Botany Department, Faculty of Agriculture, Zagazig University, Zagazig 44519, Egypt;
| | - Mohamed M. A. Ali
- Agronomy Department, Faculty of Agriculture, Zagazig University, Zagazig 44519, Egypt; (E.M.); (M.M.A.A.); (M.A.T.Y.); (A.A.)
| | - Mohamed A. T. Yasin
- Agronomy Department, Faculty of Agriculture, Zagazig University, Zagazig 44519, Egypt; (E.M.); (M.M.A.A.); (M.A.T.Y.); (A.A.)
| | - Ahmed Attia
- Agronomy Department, Faculty of Agriculture, Zagazig University, Zagazig 44519, Egypt; (E.M.); (M.M.A.A.); (M.A.T.Y.); (A.A.)
| | - Nasser Alsuhaibani
- Department of Plant Production, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia; (N.A.); (M.U.T.)
| | - Muhammad Usman Tahir
- Department of Plant Production, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia; (N.A.); (M.U.T.)
| | - Salah El-Hendawy
- Department of Plant Production, College of Food and Agriculture Sciences, King Saud University, P.O. Box 2460, Riyadh 11451, Saudi Arabia; (N.A.); (M.U.T.)
- Department of Agronomy, Faculty of Agriculture, Suez Canal University, Ismailia 41522, Egypt
| |
Collapse
|
177
|
do Amaral MN, Auler PA, Rossatto T, Barros PM, Oliveira MM, Braga EJB. Long-term somatic memory of salinity unveiled from physiological, biochemical and epigenetic responses in two contrasting rice genotypes. PHYSIOLOGIA PLANTARUM 2020; 170:248-268. [PMID: 32515828 DOI: 10.1111/ppl.13149] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 05/30/2020] [Accepted: 06/04/2020] [Indexed: 06/11/2023]
Abstract
Plants are constantly exposed to environmental fluctuations, that may occur in a single day or over longer periods. In many cases, abiotic stresses are transient and recurrent, impacting how plants respond in subsequent adverse conditions. Adaptation mechanisms may occur at the physiological, biochemical and molecular level, modifying transcriptional response, regulatory proteins, epigenetic marks or metabolites. Here, we aimed to uncover the different strategies that rice uses to respond to recurrent stress. We tested varieties with contrasting behavior towards salinity (tolerance or sensitivity) and imposed salt stress (150 mM NaCl) during 48 h at vegetative and/or reproductive stages. After 48 h of stress in reproductive stage, leaves and roots were harvested separately or otherwise the plants were submitted to a 24 h recovery, prior to sample harvesting. Plants submitted to a recurrent stress responded differently from those suffering a single stress event. In the case of the sensitive genotype, recurrent stress led to lower Na/K ratio in roots and lower hydrogen peroxide accumulation and lipid peroxidation in leaves, but maintenance of global DNA methylation levels. In the tolerant genotype, recurrent stress did neither affect the Na/K ratio nor the stomatal conductance, although the levels of superoxide anion and hydrogen peroxide accumulation were lower, as also observed for global levels of DNA methylation. Our work shows that a short pre-exposure to salt stress may improve rice tolerance to subsequent stress, trough biochemical, physiological and epigenetic processes, with more significant changes visible in the tolerant genotype.
Collapse
Affiliation(s)
| | - Priscila Ariane Auler
- Department of Botany, Biology Institute, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Tatiana Rossatto
- Department of Botany, Biology Institute, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Pedro M Barros
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Genomics of Plant Stress - Plant Functional Genomics Lab, Av. da República, Oeiras, 2780-157, Portugal
| | - Maria Margarida Oliveira
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Genomics of Plant Stress - Plant Functional Genomics Lab, Av. da República, Oeiras, 2780-157, Portugal
| | | |
Collapse
|
178
|
Understanding salt tolerance mechanism using transcriptome profiling and de novo assembly of wild tomato Solanum chilense. Sci Rep 2020; 10:15835. [PMID: 32985535 PMCID: PMC7523002 DOI: 10.1038/s41598-020-72474-w] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 08/21/2020] [Indexed: 01/30/2023] Open
Abstract
Soil salinity affects the plant growth and productivity detrimentally, but Solanum chilense, a wild relative of cultivated tomato (Solanum lycopersicum L.), is known to have exceptional salt tolerance. It has precise adaptations against direct exposure to salt stress conditions. Hence, a better understanding of the mechanism to salinity stress tolerance by S. chilense can be accomplished by comprehensive gene expression studies. In this study 1-month-old seedlings of S. chilense and S. lycopersicum were subjected to salinity stress through application of sodium chloride (NaCl) solution. Through RNA-sequencing here we have studied the differences in the gene expression patterns. A total of 386 million clean reads were obtained through RNAseq analysis using the Illumina HiSeq 2000 platform. Clean reads were further assembled de novo into a transcriptome dataset comprising of 514,747 unigenes with N50 length of 578 bp and were further aligned to the public databases. Genebank non-redundant (Nr), Viridiplantae, Gene Ontology (GO), KOG, and KEGG databases classification suggested enrichment of these unigenes in 30 GO categories, 26 KOG, and 127 pathways, respectively. Out of 265,158 genes that were differentially expressed in response to salt treatment, 134,566 and 130,592 genes were significantly up and down-regulated, respectively. Upon placing all the differentially expressed genes (DEG) in known signaling pathways, it was evident that most of the DEGs involved in cytokinin, ethylene, auxin, abscisic acid, gibberellin, and Ca2+ mediated signaling pathways were up-regulated. Furthermore, GO enrichment analysis was performed using REVIGO and up-regulation of multiple genes involved in various biological processes in chilense under salinity were identified. Through pathway analysis of DEGs, “Wnt signaling pathway” was identified as a novel pathway for the response to the salinity stress. Moreover, key genes for salinity tolerance, such as genes encoding proline and arginine metabolism, ROS scavenging system, transporters, osmotic regulation, defense and stress response, homeostasis and transcription factors were not only salt-induced but also showed higher expression in S. chilense as compared to S. lycopersicum. Thus indicating that these genes may have an important role in salinity tolerance in S. chilense. Overall, the results of this study improve our understanding on possible molecular mechanisms underlying salt tolerance in plants in general and tomato in particular.
Collapse
|
179
|
Ma Q, Wang N, Ma L, Lu J, Wang H, Wang C, Yu S, Wei H. The Cotton BEL1-Like Transcription Factor GhBLH7-D06 Negatively Regulates the Defense Response against Verticillium dahliae. Int J Mol Sci 2020; 21:E7126. [PMID: 32992496 PMCID: PMC7582620 DOI: 10.3390/ijms21197126] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2020] [Revised: 09/19/2020] [Accepted: 09/22/2020] [Indexed: 01/16/2023] Open
Abstract
Verticillium wilt will seriously affect cotton yield and fiber quality. BEL1-Like transcription factors are involved in the regulation of secondary cell wall (SCW) formation, especially the biosynthesis of lignin that also plays a key role in cotton disease resistance. However, there is no report on the role of BEL1-Like transcription factor in the regulation of plant biological stress. In this study, tissue expression pattern analysis showed that a BEL1-Like transcription factor GhBLH7-D06 was predominantly expressed in vascular tissues and the SCW thickening stage of fiber development, while its expression could also respond to Verticillium dahliae infection and the phytohormone MeJA treatment, which indicated that GhBLH7-D06 might be involved in the defense response of Verticillium wilt. Using virus-induced gene silencing (VIGS) technology, we found silencing the expression of GhBLH7-D06 could enhance the resistance of cotton plants to Verticillium wilt, and the acquisition of resistance might be mainly due to the significant overexpression of genes related to lignin biosynthesis and JA signaling pathway, which also proves that GhBLH7-D06 negatively regulates the resistance of cotton to Verticillium wilt. Based on the results of yeast two-hybrid (Y2H) library screening and confirmation by bimolecular fluorescence complementary (BiFC) experiment, we found an Ovate Family Protein (OFP) transcription factor GhOFP3-D13 which was also a negative regulator of cotton Verticillium wilt resistance could that interacts with GhBLH7-D06. Furthermore, the dual-luciferase reporter assay and yeast one-hybrid (Y1H) experiment indicated that GhBLH7-D06 could target binding to the promoter region of GhPAL-A06 to suppress its expression and eventually lead to the inhibition of lignin biosynthesis. In general, the GhBLH7-D06/GhOFP3-D13 complex can negatively regulate resistance to Verticillium wilt of cotton by inhibiting lignin biosynthesis and JA signaling pathway.
Collapse
Affiliation(s)
- Qiang Ma
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, China; (Q.M.); (L.M.); (J.L.); (H.W.); (C.W.)
| | - Nuohan Wang
- College of Biology and Food Engineering, Anyang Institute of Technology, Anyang 455000, China;
| | - Liang Ma
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, China; (Q.M.); (L.M.); (J.L.); (H.W.); (C.W.)
| | - Jianhua Lu
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, China; (Q.M.); (L.M.); (J.L.); (H.W.); (C.W.)
| | - Hantao Wang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, China; (Q.M.); (L.M.); (J.L.); (H.W.); (C.W.)
| | - Congcong Wang
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, China; (Q.M.); (L.M.); (J.L.); (H.W.); (C.W.)
| | - Shuxun Yu
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, China; (Q.M.); (L.M.); (J.L.); (H.W.); (C.W.)
| | - Hengling Wei
- State Key Laboratory of Cotton Biology, Institute of Cotton Research of Chinese Academy of Agricultural Science, Anyang 455000, China; (Q.M.); (L.M.); (J.L.); (H.W.); (C.W.)
| |
Collapse
|
180
|
Gazara RK, Khan S, Iqrar S, Ashrafi K, Abdin MZ. Comparative transcriptome profiling of rice colonized with beneficial endophyte, Piriformospora indica, under high salinity environment. Mol Biol Rep 2020; 47:7655-7673. [PMID: 32979167 DOI: 10.1007/s11033-020-05839-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Accepted: 09/10/2020] [Indexed: 01/20/2023]
Abstract
The salinity stress tolerance in plants has been studied enormously, reflecting its agronomic relevance. Despite the extensive research, limited success has been achieved in relation to the plant tolerance mechanism. The beneficial interaction between Piriformospora indica and rice could essentially improve the performance of the plant during salt stress. In this study, the transcriptomic data between P. indica treated and untreated rice roots were compared under control and salt stress conditions. Overall, 661 salt-responsive differentially expressed genes (DEGs) were detected with 161 up- and 500 down-regulated genes in all comparison groups. Gene ontology analyses indicated the DEGs were mainly enriched in "auxin-activated signaling pathway", "water channel activity", "integral component of plasma membrane", "stress responses", and "metabolic processes". Kyoto Encyclopedia of Genes and Genomes pathway analysis revealed that the DEGs were primarily related to "Zeatin biosynthesis", "Fatty acid elongation", "Carotenoid biosynthesis", and "Biosynthesis of secondary metabolites". Particularly, genes related to cell wall modifying enzymes (e.g. invertase/pectin methylesterase inhibitor protein and arabinogalactans), phytohormones (e.g. Auxin-responsive Aux/IAA gene family, ent-kaurene synthase, and 12-oxophytodienoate reductase) and receptor-like kinases (e.g. AGC kinase and receptor protein kinase) were induced in P. indica colonized rice under salt stress condition. The differential expression of these genes implies that the coordination between hormonal crosstalk, signaling, and cell wall dynamics contributes to the higher growth and tolerance in P. indica-inoculated rice. Our results offer a valuable resource for future functional studies on salt-responsive genes that should improve the resilience and adaptation of rice against salt stress.
Collapse
Affiliation(s)
- Rajesh K Gazara
- Centro de Bioiências e Biotecnologia, Universidade Estadual do Norte Fluminense "Darcy Ribeiro" University, Campos dos goytacazes, Rio de Janeiro, Brazil
- Department of Biotechnology, Indian Institute of Technology Roorkee, Roorkee, 247667, India
- Department of Electrical Engineering, Indian Institute of Technology Roorkee, Roorkee, 247667, India
| | - Shazia Khan
- Department of Biotechnology, Jamia Hamdard, New Delhi, 110062, India
| | - Sadia Iqrar
- Department of Biotechnology, Jamia Hamdard, New Delhi, 110062, India
| | - Kudsiya Ashrafi
- Department of Biotechnology, Jamia Hamdard, New Delhi, 110062, India
| | - Malik Z Abdin
- Department of Biotechnology, Jamia Hamdard, New Delhi, 110062, India.
| |
Collapse
|
181
|
Duarte-Delgado D, Dadshani S, Schoof H, Oyiga BC, Schneider M, Mathew B, Léon J, Ballvora A. Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes. BMC PLANT BIOLOGY 2020; 20:428. [PMID: 32938380 PMCID: PMC7493341 DOI: 10.1186/s12870-020-02616-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Accepted: 08/19/2020] [Indexed: 05/17/2023]
Abstract
BACKGROUND Bread wheat is one of the most important crops for the human diet, but the increasing soil salinization is causing yield reductions worldwide. Improving salt stress tolerance in wheat requires the elucidation of the mechanistic basis of plant response to this abiotic stress factor. Although several studies have been performed to analyze wheat adaptation to salt stress, there are still some gaps to fully understand the molecular mechanisms from initial signal perception to the onset of responsive tolerance pathways. The main objective of this study is to exploit the dynamic salt stress transcriptome in underlying QTL regions to uncover candidate genes controlling salt stress tolerance in bread wheat. The massive analysis of 3'-ends sequencing protocol was used to analyze leave samples at osmotic and ionic phases. Afterward, stress-responsive genes overlapping QTL for salt stress-related traits in two mapping populations were identified. RESULTS Among the over-represented salt-responsive gene categories, the early up-regulation of calcium-binding and cell wall synthesis genes found in the tolerant genotype are presumably strategies to cope with the salt-related osmotic stress. On the other hand, the down-regulation of photosynthesis-related and calcium-binding genes, and the increased oxidative stress response in the susceptible genotype are linked with the greater photosynthesis inhibition at the osmotic phase. The specific up-regulation of some ABC transporters and Na+/Ca2+ exchangers in the tolerant genotype at the ionic stage indicates their involvement in mechanisms of sodium exclusion and homeostasis. Moreover, genes related to protein synthesis and breakdown were identified at both stress phases. Based on the linkage disequilibrium blocks, salt-responsive genes within QTL intervals were identified as potential components operating in pathways leading to salt stress tolerance. Furthermore, this study conferred evidence of novel regions with transcription in bread wheat. CONCLUSION The dynamic transcriptome analysis allowed the comparison of osmotic and ionic phases of the salt stress response and gave insights into key molecular mechanisms involved in the salt stress adaptation of contrasting bread wheat genotypes. The leveraging of the highly contiguous chromosome-level reference genome sequence assembly facilitated the QTL dissection by targeting novel candidate genes for salt tolerance.
Collapse
Affiliation(s)
| | - Said Dadshani
- INRES-Plant Breeding, University of Bonn, Bonn, Germany
| | - Heiko Schoof
- INRES-Crop Bioinformatics, University of Bonn, Bonn, Germany
| | | | | | - Boby Mathew
- INRES-Plant Breeding, University of Bonn, Bonn, Germany
| | - Jens Léon
- INRES-Plant Breeding, University of Bonn, Bonn, Germany
| | - Agim Ballvora
- INRES-Plant Breeding, University of Bonn, Bonn, Germany.
| |
Collapse
|
182
|
Meng Y, Yin Q, Yan Z, Wang Y, Niu J, Zhang J, Fan K. Exogenous Silicon Enhanced Salt Resistance by Maintaining K +/Na + Homeostasis and Antioxidant Performance in Alfalfa Leaves. FRONTIERS IN PLANT SCIENCE 2020; 11:1183. [PMID: 32983188 PMCID: PMC7479291 DOI: 10.3389/fpls.2020.01183] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Accepted: 07/21/2020] [Indexed: 05/23/2023]
Abstract
Silicon (Si) has been known to enhance salt resistance in plants. In this experiment, 4-weeks-old alfalfa seedlings were exposed to different NaCl concentrations (0-200 mM) with or without 2 mM Si for two weeks. The results showed that NaCl-stressed alfalfa seedlings showed a decrease in growth performance, such as stem extension rate, predawn leaf water potential (LWP) and the chlorophyll content, potassium (K+) concentration, as well as the ratio of potassium/sodium ion (K+/Na+). In contrast, NaCl-stressed alfalfa seedlings increased leaf Na+ concentration and the malondialdehyde (MDA) level, as well as the activities of superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) in alfalfa leaves. Besides, exogenous Si application enhanced photosynthetic parameters of NaCl-stressed alfalfa seedlings, which was accompanied by the improvement in predawn LWP, level of chlorophyll content, and water use efficiency (WUE). The Si-treated plants enhanced salinity tolerance by limiting Na+ accumulation while maintaining K+ concentration in leaves. It also established K+/Na+ homeostasis by increasing K+/Na+ radio to protect the leaves from Na+ toxicity and thereby maintained higher chlorophyll retention. Simultaneously, Si-treated plants showed higher antioxidant activities and decreased MDA content under NaCl stress. Our study concluded that Si application enhanced salt tolerance of alfalfa through improving the leaves photosynthesis, enhancing antioxidant performance and maintaining K+/Na+ homeostasis in leaves. Our data further indicated exogenous Si application could be effectively manipulated for improving salt resistance of alfalfa grown in saline soil.
Collapse
Affiliation(s)
- Yuanfa Meng
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot, China
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Qiang Yin
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Zhijian Yan
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Yuqing Wang
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Jianming Niu
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Jie Zhang
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot, China
| | - Kai Fan
- Institute of Grassland Research, Chinese Academy of Agricultural Sciences, Hohhot, China
| |
Collapse
|
183
|
Al-Khateeb SA, Al-Khateeb AA, Sattar MN, Mohmand AS. Induced in vitro adaptation for salt tolerance in date palm (Phoenix dactylifera L.) cultivar Khalas. Biol Res 2020; 53:37. [PMID: 32847618 PMCID: PMC7450699 DOI: 10.1186/s40659-020-00305-3] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Accepted: 08/11/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Soil salinity causes huge economic losses to agriculture productivity in arid and semiarid areas worldwide. The affected plants face disturbances in osmotic adjustment, nutrient transport, ionic toxicity and reduced photosynthesis. Conventional breeding approaches produce little success in combating various stresses in plants. However, non-conventional approaches, such as in vitro tissue culturing, produce genetic variability in the development of salt-tolerant plants, particularly in woody trees. RESULTS Embryogenic callus cultures of the date palm cultivar Khalas were subjected to various salt levels ranging from 0 to 300 mM in eight subcultures. The regenerants obtained from the salt-treated cultures were regenerated and evaluated using the same concentration of NaCl with which the calli were treated. All the salt-adapted (SA) regenerants showed improved growth characteristics, physiological performance, ion concentrations and K+/Na+ ratios than the salt non-adapted (SNA) regenerants and the control. Regression between the leaf Na+ concentration and net photosynthesis revealed an inverse nonlinear correlation in the SNA regenerants. Leaf K+ contents and stomatal conductance showed a strong linear relationship in SA regenerants compared with the inverse linear correlation, and a very poor coefficient of determination in SNA regenerants. The genetic fidelity of the selected SA regenerants was also tested using 36 random amplified polymorphic DNA (RAPD) primers, of which 26 produced scorable bands. The primers generated 1-10 bands, with an average of 5.4 bands per RAPD primer; there was no variation between SA regenerants and the negative control. CONCLUSION This is the first report of the variants generated from salt-stressed cultures and their potential adaptation to salinity in date palm cv. Khalas. The massive production of salt stress-adapted date palm plants may be much easier using the salt adaptation approach. Such plants can perform better during exposure to salt stress compared to the non-treated date palm plants.
Collapse
Affiliation(s)
- Suliman A Al-Khateeb
- Department of Environment Natural Resources, College of Agriculture and Food Sciences, King Faisal University, P.O. Box 400, Al-Ahsa, 31982, Kingdom of Saudi Arabia.
| | - Abdullatif A Al-Khateeb
- Department of Agriculture Biotechnology, College of Agriculture and Food Sciences, King Faisal University, P.O. Box 400, Al-Ahsa, 31982, Kingdom of Saudi Arabia
| | - Muhammad N Sattar
- Central Laboratories, King Faisal University, Box 420, Al-Ahsa, 31982, Saudi Arabia
| | - Akbar S Mohmand
- Research, Innovation and Commercialization (ORIC), Bacha Khan University Charsadda, Charsadda, Khyber Pakhtunkhawa, Pakistan
| |
Collapse
|
184
|
Kawakami Y, Imran S, Katsuhara M, Tada Y. Na + Transporter SvHKT1;1 from a Halophytic Turf Grass Is Specifically Upregulated by High Na + Concentration and Regulates Shoot Na + Concentration. Int J Mol Sci 2020; 21:ijms21176100. [PMID: 32847126 PMCID: PMC7503356 DOI: 10.3390/ijms21176100] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Revised: 08/21/2020] [Accepted: 08/21/2020] [Indexed: 12/15/2022] Open
Abstract
We characterized an Na+ transporter SvHKT1;1 from a halophytic turf grass, Sporobolus virginicus. SvHKT1;1 mediated inward and outward Na+ transport in Xenopus laevis oocytes and did not complement K+ transporter-defective mutant yeast. SvHKT1;1 did not complement athkt1;1 mutant Arabidopsis, suggesting its distinguishable function from other typical HKT1 transporters. The transcript was abundant in the shoots compared with the roots in S. virginicus and was upregulated by severe salt stress (500 mM NaCl), but not by lower stress. SvHKT1;1-expressing Arabidopsis lines showed higher shoot Na+ concentrations and lower salt tolerance than wild type (WT) plants under nonstress and salt stress conditions and showed higher Na+ uptake rate in roots at the early stage of salt treatment. These results suggested that constitutive expression of SvHKT1;1 enhanced Na+ uptake in root epidermal cells, followed by increased Na+ transport to shoots, which led to reduced salt tolerance. However, Na+ concentrations in phloem sap of the SvHKT1;1 lines were higher than those in WT plants under salt stress. Based on this result, together with the induction of the SvHKT1;1 transcription under high salinity stress, it was suggested that SvHKT1;1 plays a role in preventing excess shoot Na+ accumulation in S. virginicus.
Collapse
Affiliation(s)
- Yuki Kawakami
- Graduate School of Bionics, Computer and Media Sciences, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan;
| | - Shahin Imran
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan; (S.I.); (M.K.)
| | - Maki Katsuhara
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan; (S.I.); (M.K.)
| | - Yuichi Tada
- School of Biosciences and Biotechnology, Tokyo University of Technology, 1404-1 Katakura, Hachioji, Tokyo 192-0982, Japan
- Correspondence:
| |
Collapse
|
185
|
Li B. Identification of Genes Conferring Plant Salt Tolerance using GWAS: Current Success and Perspectives. PLANT & CELL PHYSIOLOGY 2020; 61:1419-1426. [PMID: 32484868 DOI: 10.1093/pcp/pcaa073] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Accepted: 05/25/2020] [Indexed: 06/11/2023]
Abstract
An understanding of the molecular mechanisms that underlie plant salt tolerance is important for both economic and scientific interests. Genome-wide association study (GWAS) is a promising approach to pinpoint genes that confer plant salt tolerance. With the advancement of supporting technology and methodology, GWAS has enabled the discovery of genes that play central roles in regulating plant salt tolerance in the past decade. Here, I highlight recent successful GWAS work in unveiling the molecular factors underlying plant salt tolerance and discuss the concerns and opportunities in conducting such experiments. It is anticipated that GWAS will be increasingly successful in the identification of key genes that are useful for crop improvement.
Collapse
Affiliation(s)
- Bo Li
- School of Life Sciences, Lanzhou University, Lanzhou 730000, China
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, Lanzhou 730000, China
| |
Collapse
|
186
|
Saade S, Brien C, Pailles Y, Berger B, Shahid M, Russell J, Waugh R, Negrão S, Tester M. Dissecting new genetic components of salinity tolerance in two-row spring barley at the vegetative and reproductive stages. PLoS One 2020; 15:e0236037. [PMID: 32701981 PMCID: PMC7377408 DOI: 10.1371/journal.pone.0236037] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2020] [Accepted: 06/27/2020] [Indexed: 11/18/2022] Open
Abstract
Soil salinity imposes an agricultural and economic burden that may be alleviated by identifying the components of salinity tolerance in barley, a major crop and the most salt tolerant cereal. To improve our understanding of these components, we evaluated a diversity panel of 377 two-row spring barley cultivars during both the vegetative, in a controlled environment, and the reproductive stages, in the field. In the controlled environment, a high-throughput phenotyping platform was used to assess the growth-related traits under both control and saline conditions. In the field, the agronomic traits were measured from plots irrigated with either fresh or saline water. Association mapping for the different components of salinity tolerance enabled us to detect previously known associations, such as HvHKT1;5. Using an "interaction model", which took into account the interaction between treatment (control and salt) and genetic markers, we identified several loci associated with yield components related to salinity tolerance. We also observed that the two developmental stages did not share genetic regions associated with the components of salinity tolerance, suggesting that different mechanisms play distinct roles throughout the barley life cycle. Our association analysis revealed that genetically defined regions containing known flowering genes (Vrn-H3, Vrn-H1, and HvNAM-1) were responsive to salt stress. We identified a salt-responsive locus (7H, 128.35 cM) that was associated with grain number per ear, and suggest a gene encoding a vacuolar H+-translocating pyrophosphatase, HVP1, as a candidate. We also found a new QTL on chromosome 3H (139.22 cM), which was significant for ear number per plant, and a locus on chromosome 2H (141.87 cM), previously identified using a nested association mapping population, which associated with a yield component and interacted with salinity stress. Our study is the first to evaluate a barley diversity panel for salinity stress under both controlled and field conditions, allowing us to identify contributions from new components of salinity tolerance which could be used for marker-assisted selection when breeding for marginal and saline regions.
Collapse
Affiliation(s)
- Stephanie Saade
- Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Chris Brien
- School of Agriculture, Food and Wine, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
- School of Information Technology and Mathematical Sciences, University of South Australia, Adelaide, South Australia, Australia
- The Plant Accelerator, Australian Plant Phenomics Facility, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
| | - Yveline Pailles
- Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| | - Bettina Berger
- School of Agriculture, Food and Wine, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
- The Plant Accelerator, Australian Plant Phenomics Facility, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
| | - Mohammad Shahid
- International Center for Biosaline Agriculture (ICBA), Dubai, United Arab Emirates
| | - Joanne Russell
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland
| | - Robbie Waugh
- School of Agriculture, Food and Wine, Waite Research Precinct, University of Adelaide, Urrbrae, South Australia, Australia
- Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland
- Division of Plant Sciences, School of Life Sciences, University of Dundee at The James Hutton Institute, Invergowrie, Dundee, Scotland
| | - Sónia Negrão
- School of Biology and Environmental Sciences, University College Dublin, Belfield, Dublin, Ireland
| | - Mark Tester
- Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
| |
Collapse
|
187
|
Zhang Y, Gong H, Li D, Zhou R, Zhao F, Zhang X, You J. Integrated small RNA and Degradome sequencing provide insights into salt tolerance in sesame (Sesamum indicum L.). BMC Genomics 2020; 21:494. [PMID: 32682396 PMCID: PMC7368703 DOI: 10.1186/s12864-020-06913-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 07/14/2020] [Indexed: 01/01/2023] Open
Abstract
BACKGROUND MicroRNAs (miRNAs) exhibit important regulatory roles in the response to abiotic stresses by post-transcriptionally regulating the target gene expression in plants. However, their functions in sesame response to salt stress are poorly known. To dissect the complex mechanisms underlying salt stress response in sesame, miRNAs and their targets were identified from two contrasting sesame genotypes by a combined analysis of small RNAs and degradome sequencing. RESULTS A total of 351 previously known and 91 novel miRNAs were identified from 18 sesame libraries. Comparison of miRNA expressions between salt-treated and control groups revealed that 116 miRNAs were involved in salt stress response. Using degradome sequencing, potential target genes for some miRNAs were also identified. The combined analysis of all the differentially expressed miRNAs and their targets identified miRNA-mRNA regulatory networks and 21 miRNA-mRNA interaction pairs that exhibited contrasting expressions in sesame under salt stress. CONCLUSIONS This comprehensive integrated analysis may provide new insights into the genetic regulation mechanism of miRNAs underlying the adaptation of sesame to salt stress.
Collapse
Affiliation(s)
- Yujuan Zhang
- Cotton Research Center, Shandong Academy of Agricultural Sciences, Jinan, 250100, China.
| | - Huihui Gong
- Cotton Research Center, Shandong Academy of Agricultural Sciences, Jinan, 250100, China
| | - Donghua Li
- Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Rong Zhou
- Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Fengtao Zhao
- Cotton Research Center, Shandong Academy of Agricultural Sciences, Jinan, 250100, China
| | - Xiurong Zhang
- Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Jun You
- Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, 430062, China.
| |
Collapse
|
188
|
Genome-Wide Characterization and Expression Analysis of NHX Gene Family under Salinity Stress in Gossypium barbadense and Its Comparison with Gossypium hirsutum. Genes (Basel) 2020; 11:genes11070803. [PMID: 32708576 PMCID: PMC7397021 DOI: 10.3390/genes11070803] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Revised: 07/06/2020] [Accepted: 07/14/2020] [Indexed: 12/13/2022] Open
Abstract
Cotton is an important economic crop affected by different abiotic stresses at different developmental stages. Salinity limits the growth and productivity of crops worldwide. Na+/H+ antiporters play a key role during the plant development and in its tolerance to salt stress. The aim of the present study was a genome-wide characterization and expression pattern analysis under the salinity stress of the sodium-proton antiporter (NHX) of Gossypium barbadense in comparison with Gossypium hirsutum. In G. barbadense, 25 NHX genes were identified on the basis of the Na+_H+ exchanger domain. All except one of the G. barbadense NHX transporters have an Amiloride motif that is a known inhibitor of Na+ ions in plants. A phylogenetic analysis inferred three classes of GbNHX genes-viz., Vac (GbNHX1, 2 and 4), Endo (GbNHX6), and PM (GbNHX7). A high number of the stress-related cis-acting elements observed in promoters show their role in tolerance against abiotic stresses. The Ka/Ks values show that the majority of GbNHX genes are subjected to strong purifying selection under the course of evolution. To study the functional divergence of G. barbadense NHX transporters, the real-time gene expression was analyzed under salt stress in the root, stem, and leaf tissues. In G. barbadense, the expression was higher in the stem, while in G. hirsutum the leaf and root showed a high expression. Moreover, our results revealed that NHX2 homologues in both species have a high expression under salinity stress at higher time intervals, followed by NHX7. The protein-protein prediction study revealed that GbNHX7 is involved in the CBL-CIPK protein interaction pathway. Our study also provided valuable information explaining the molecular mechanism of Na+ transport for the further functional study of Gossypium NHX genes.
Collapse
|
189
|
Ulfat M, Athar HUR, Khan ZD, Kalaji HM. RNAseq Analysis Reveals Altered Expression of Key Ion Transporters Causing Differential Uptake of Selective Ions in Canola ( Brassica napus L.) Grown under NaCl Stress. PLANTS (BASEL, SWITZERLAND) 2020; 9:E891. [PMID: 32674475 PMCID: PMC7412502 DOI: 10.3390/plants9070891] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 07/05/2020] [Accepted: 07/09/2020] [Indexed: 11/20/2022]
Abstract
Salinity is one of the major abiotic stresses prevailing throughout the world that severely limits crop establishment and production. Every crop has an intra-specific genetic variation that enables it to cope with variable environmental conditions. Hence, this genetic variability is a good tool to exploit germplasms in salt-affected areas. Further, the selected cultivars can be effectively used by plant breeders and molecular biologists for the improvement of salinity tolerance. In the present study, it was planned to identify differential expression of genes associated with selective uptake of different ions under salt stress in selected salt-tolerant canola (Brassica napus L.) cultivar. For the purpose, an experiment was carried out to evaluate the growth response of different salt-sensitive and salt-tolerant canola cultivars. Plants were subjected to 200 mM NaCl stress. Canola cultivars-Faisal Canola, DGL, Dunkled, and CON-II-had higher growth than in cvs Cyclone, Ac-EXcel, Legend, and Oscar. Salt-tolerant cultivars were better able to maintain plant water status probably through osmotic adjustment as compared to salt-sensitive cultivars. Although salt stress increased shoot Na+ and shoot Cl- contents in all canola cultivars, salt-tolerant cultivars had a lower accumulation of these toxic nutrients. Similarly, salt stress reduced shoot K+ and Ca2+ contents in all canola cultivars, while salt-tolerant cultivars had a higher accumulation of K+ and Ca2+ in leaves, thereby having greater shoot K+/Na+ and Ca2+/Na+ ratios. Nutrient utilization efficiency decreased significantly in all canola cultivars due to the imposition of salt stress; however, it was greater in salt-tolerant cultivars-Faisal Canola, DGL, and Dunkled. Among four salt-tolerant canola cultivars, cv Dunkled was maximal in physiological attributes, and thus differentially expressed genes (DEGs) were assessed in it by RNA-seq analysis using next-generation sequencing (NGS) techniques. The differentially expressed genes (DEG) in cv Dunkled under salt stress were found to be involved in the regulation of ionic concentration, photosynthesis, antioxidants, and hormonal metabolism. However, the most prominent upregulated DEGs included Na/K transporter, HKT1, potassium transporter, potassium channel, chloride channel, cation exchanger, Ca channel. The RNA-seq data were validated through qRT-PCR. It was thus concluded that genes related to the regulation of ionic concentrate are significantly upregulated and expressed under salt stress, in the cultivar Dunkled.
Collapse
Affiliation(s)
- Mobina Ulfat
- Department of Botany, Government College University, Lahore 54000, Pakistan;
- Department of Botany, Lahore College for Women University, Lahore 54000, Pakistan
| | - Habib-ur-Rehman Athar
- Institute of Pure and Applied Biology, Bhauddin Zakria University, Multan 66000, Pakistan
| | - Zaheerud-din Khan
- Department of Botany, Government College University, Lahore 54000, Pakistan;
| | - Hazem M. Kalaji
- Department of Plant Physiology, Institute of Biology, Warsaw University of Life Sciences SGGW, Nowoursynowska 159, 02-776 Warsaw, Poland;
| |
Collapse
|
190
|
Alnayef M, Solis C, Shabala L, Ogura T, Chen Z, Bose J, Maathuis FJM, Venkataraman G, Tanoi K, Yu M, Zhou M, Horie T, Shabala S. Changes in Expression Level of OsHKT1;5 Alters Activity of Membrane Transporters Involved in K + and Ca 2+ Acquisition and Homeostasis in Salinized Rice Roots. Int J Mol Sci 2020; 21:E4882. [PMID: 32664377 PMCID: PMC7402344 DOI: 10.3390/ijms21144882] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 07/05/2020] [Accepted: 07/06/2020] [Indexed: 01/02/2023] Open
Abstract
In rice, the OsHKT1;5 gene has been reported to be a critical determinant of salt tolerance. This gene is harbored by the SKC1 locus, and its role was attributed to Na+ unloading from the xylem. No direct evidence, however, was provided in previous studies. Also, the reported function of SKC1 on the loading and delivery of K+ to the shoot remains to be explained. In this work, we used an electrophysiological approach to compare the kinetics of Na+ uptake by root xylem parenchyma cells using wild type (WT) and NIL(SKC1) plants. Our data showed that Na+ reabsorption was observed in WT, but not NIL(SKC1) plants, thus questioning the functional role of HKT1;5 as a transporter operating in the direct Na+ removal from the xylem. Instead, changes in the expression level of HKT1;5 altered the activity of membrane transporters involved in K+ and Ca2+ acquisition and homeostasis in the rice epidermis and stele, explaining the observed phenotype. We conclude that the role of HKT1;5 in plant salinity tolerance cannot be attributed to merely reducing Na+ concentration in the xylem sap but triggers a complex feedback regulation of activities of other transporters involved in the maintenance of plant ionic homeostasis and signaling under stress conditions.
Collapse
Affiliation(s)
- Mohammad Alnayef
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
| | - Celymar Solis
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- School of Science and Health, Western Sydney University, Penrith, NSW 2751, Australia;
| | - Lana Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
| | - Takaaki Ogura
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan;
| | - Zhonghua Chen
- School of Science and Health, Western Sydney University, Penrith, NSW 2751, Australia;
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW 2751, Australia
| | - Jayakumar Bose
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- Australian Research Council Centre of Excellence in Plant Energy Biology, School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
| | | | - Gayatri Venkataraman
- Plant Molecular Biology Laboratory, M.S. Swaminathan Research Foundation, Chennai 600113, India;
| | - Keitaro Tanoi
- Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo 113-8657, Japan;
| | - Min Yu
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
| | - Tomoaki Horie
- Division of Applied Biology, Faculty of Textile Science and Technology, Shinshu University, Nagano 386-8567, Japan;
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7005, Australia; (M.A.); (C.S.); (L.S.); (T.O.); (J.B.); (M.Z.)
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China;
| |
Collapse
|
191
|
Henderson AN, Crim PM, Cumming JR, Hawkins JS. Phenotypic and physiological responses to salt exposure in Sorghum reveal diversity among domesticated landraces. AMERICAN JOURNAL OF BOTANY 2020; 107:983-992. [PMID: 32648285 DOI: 10.1002/ajb2.1506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 12/19/2019] [Accepted: 04/07/2020] [Indexed: 06/11/2023]
Abstract
PREMISE Soil salinity negatively impacts plant function, development, and yield. To overcome this impediment to agricultural productivity, variation in morphological and physiological response to salinity among genotypes of important crops should be explored. Sorghum bicolor is a staple crop that has adapted to a variety of environmental conditions and contains a significant amount of standing genetic diversity, making it an exemplary species to study variation in salinity tolerance. METHODS Twenty-one diverse Sorghum accessions were treated with nonsaline water or 75 mM sodium chloride. Salinity tolerance was assessed via changes in biomass between control and salt-treated individuals. Accessions were first rank-ordered for salinity tolerance, and then individuals spanning a wide range of responses were analyzed for foliar proline and ion accumulation. Tolerance rankings were then overlaid on a neighbor-joining tree. RESULTS We found that, while proline is often a good indicator of osmotic adjustment and is historically associated with increased salt tolerance in many species, proline accumulation in sorghum reflects a stress response injury rather than acclimation. When combining ion profiles with stress tolerance indices, the variation observed in tolerance was not a sole result of Na+ accumulation, but rather reflected accession-specific mechanisms. CONCLUSIONS We identified significant variation in salinity tolerance among Sorghum accessions that may be a result of the domestication history of Sorghum. When we compared our results with known phylogenetic relationships within sorghum, the most parsimonious explanation for our findings is that salinity tolerance was acquired early during domestication and subsequently lost in accessions growing in areas varying in soil salinity.
Collapse
Affiliation(s)
- Ashley N Henderson
- Department of Biology, West Virginia University, Morgantown, WV, 265052, USA
| | - Philip M Crim
- Department of Biology, West Virginia University, Morgantown, WV, 265052, USA
- Department of Biology, The College of Saint Rose, Albany, NY, 12203, USA
| | - Jonathan R Cumming
- Department of Biology, West Virginia University, Morgantown, WV, 265052, USA
| | - Jennifer S Hawkins
- Department of Biology, West Virginia University, Morgantown, WV, 265052, USA
| |
Collapse
|
192
|
Salicylic acid regulates photosynthetic electron transfer and stomatal conductance of mung bean (Vigna radiata L.) under salinity stress. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2020. [DOI: 10.1016/j.bcab.2020.101635] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
|
193
|
Giorio P, Cirillo V, Caramante M, Oliva M, Guida G, Venezia A, Grillo S, Maggio A, Albrizio R. Physiological Basis of Salt Stress Tolerance in a Landrace and a Commercial Variety of Sweet Pepper ( Capsicum annuum L.). PLANTS 2020; 9:plants9060795. [PMID: 32630481 PMCID: PMC7356216 DOI: 10.3390/plants9060795] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 06/17/2020] [Accepted: 06/22/2020] [Indexed: 01/09/2023]
Abstract
Salt stress is one of the most impactful abiotic stresses that plants must cope with. Plants’ ability to tolerate salt stress relies on multiple mechanisms, which are associated with biomass and yield reductions. Sweet pepper is a salt-sensitive crop that in Mediterranean regions can be exposed to salt build-up in the root zone due to irrigation. Understanding the physiological mechanisms that plants activate to adapt to soil salinization is essential to develop breeding programs and agricultural practices that counteract this phenomenon and ultimately minimize yield reductions. With this aim, the physiological and productive performances of Quadrato D’Asti, a common commercial sweet pepper cultivar in Italy, and Cazzone Giallo, a landrace of the Campania region (Italy), were compared under different salt stress treatments. Quadrato D’Asti had higher tolerance to salt stress when compared to Cazzone Giallo in terms of yield, which was associated with higher leaf biomass vs. fruit ratio in the former. Ion accumulation and profiling between the two genoptypes revealed that Quadrato D’Asti was more efficient at excluding chloride from green tissues, allowing the maintenance of photosystem functionality under stress. In contrast, Cazzone Giallo seemed to compartmentalize most sodium in the stem. While sodium accumulation in the stems has been shown to protect shoots from sodium toxicity, in pepper and/or in the specific experimental conditions imposed, this strategy was less efficient than chloride exclusion for salt stress tolerance.
Collapse
Affiliation(s)
- Pasquale Giorio
- National Research Council of Italy, Institute for Mediterranean Agricultural and Forestry Systems (CNR-ISAFOM), Ercolano, 80056 Naples, Italy; (P.G.); (M.O.); (G.G.); (R.A.)
| | - Valerio Cirillo
- Department of Agricultural Science, University of Napoli Federico II, Portici, 80055 Naples, Italy;
- Correspondence:
| | - Martina Caramante
- Council for Agricultural Research and Economics, Research Centre for Vegetable and Ornamental Crops (CREA-OF), Pontecagnano, 84098 Salerno, Italy; (M.C.); (A.V.)
| | - Marco Oliva
- National Research Council of Italy, Institute for Mediterranean Agricultural and Forestry Systems (CNR-ISAFOM), Ercolano, 80056 Naples, Italy; (P.G.); (M.O.); (G.G.); (R.A.)
| | - Gianpiero Guida
- National Research Council of Italy, Institute for Mediterranean Agricultural and Forestry Systems (CNR-ISAFOM), Ercolano, 80056 Naples, Italy; (P.G.); (M.O.); (G.G.); (R.A.)
| | - Accursio Venezia
- Council for Agricultural Research and Economics, Research Centre for Vegetable and Ornamental Crops (CREA-OF), Pontecagnano, 84098 Salerno, Italy; (M.C.); (A.V.)
| | - Stefania Grillo
- National Research Council of Italy, Institute of Biosciences and Bioresources (CNR-IBBR), Research Division Portici, 80055 Naples, Italy;
| | - Albino Maggio
- Department of Agricultural Science, University of Napoli Federico II, Portici, 80055 Naples, Italy;
| | - Rossella Albrizio
- National Research Council of Italy, Institute for Mediterranean Agricultural and Forestry Systems (CNR-ISAFOM), Ercolano, 80056 Naples, Italy; (P.G.); (M.O.); (G.G.); (R.A.)
| |
Collapse
|
194
|
Huang L, Wu DZ, Zhang GP. Advances in studies on ion transporters involved in salt tolerance and breeding crop cultivars with high salt tolerance. J Zhejiang Univ Sci B 2020; 21:426-441. [PMID: 32478490 PMCID: PMC7306632 DOI: 10.1631/jzus.b1900510] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Revised: 12/27/2019] [Accepted: 12/27/2019] [Indexed: 11/11/2022]
Abstract
Soil salinity is a global major abiotic stress threatening crop productivity. In salty conditions, plants may suffer from osmotic, ionic, and oxidative stresses, resulting in inhibition of growth and development. To deal with these stresses, plants have developed a series of tolerance mechanisms, including osmotic adjustment through accumulating compatible solutes in the cytoplasm, reactive oxygen species (ROS) scavenging through enhancing the activity of anti-oxidative enzymes, and Na+/K+ homeostasis regulation through controlling Na+ uptake and transportation. In this review, recent advances in studies of the mechanisms of salt tolerance in plants are described in relation to the ionome, transcriptome, proteome, and metabolome, and the main factor accounting for differences in salt tolerance among plant species or genotypes within a species is presented. We also discuss the application and roles of different breeding methodologies in developing salt-tolerant crop cultivars. In particular, we describe the advantages and perspectives of genome or gene editing in improving the salt tolerance of crops.
Collapse
|
195
|
Implications on food production of the changing water cycle in the Vietnamese Mekong Delta. Glob Ecol Conserv 2020. [DOI: 10.1016/j.gecco.2020.e00989] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
|
196
|
do Amaral MN, Arge LWP, Auler PA, Rossatto T, Milech C, Magalhães AMD, Braga EJB. Long-term transcriptional memory in rice plants submitted to salt shock. PLANTA 2020; 251:111. [PMID: 32474838 DOI: 10.1007/s00425-020-03397-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Accepted: 04/29/2020] [Indexed: 06/11/2023]
Abstract
A first salt shock event alters transcriptional and physiological responses to a second event, being possible to identify 26 genes associated with long-term memory. Soil salinity significantly affects rice cultivation, resulting in large losses in growth and productivity. Studies report that a disturbing event can prepare the plant for a subsequent event through memory acquisition, involving physiological and molecular processes. Therefore, genes that provide altered responses in subsequent events define a category known as "memory genes". In this work, the RNA-sequencing (RNA-Seq) technique was used to analyse the transcriptional profile of rice plants subjected to different salt shock events and to characterise genes associated with long-term memory. Plants subjected to recurrent salt shock showed differences in stomatal conductance, chlorophyll index, electrolyte leakage, and the number of differentially expressed genes (DEGs), and they had lower Na+/K+ ratios than plants that experienced only one stress event. Additionally, the mammalian target of rapamycin (mTOR) pathways, and carbohydrate and amino acid-associated pathways were altered under all conditions. Memory genes can be classified according to their responses during the first event (+ or -) and the second shock event (+ or -), being possible to observe a larger number of transcripts for groups [+ /-] and [-/ +], genes characterised as "revised response." This is the first long-term transcriptional memory study in rice plants under salt shock, providing new insights into the process of plant memory acquisition.
Collapse
Affiliation(s)
- Marcelo N do Amaral
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil.
| | - Luis Willian P Arge
- Laboratory of Molecular Genetics and Plant Biotechnology, CCS Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Priscila A Auler
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Tatiana Rossatto
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Cristini Milech
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | | | - Eugenia Jacira B Braga
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| |
Collapse
|
197
|
Houston K, Qiu J, Wege S, Hrmova M, Oakey H, Qu Y, Smith P, Situmorang A, Macaulay M, Flis P, Bayer M, Roy S, Halpin C, Russell J, Schreiber M, Byrt C, Gilliham M, Salt DE, Waugh R. Barley sodium content is regulated by natural variants of the Na + transporter HvHKT1;5. Commun Biol 2020; 3:258. [PMID: 32444849 PMCID: PMC7244711 DOI: 10.1038/s42003-020-0990-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 04/28/2020] [Indexed: 12/04/2022] Open
Abstract
During plant growth, sodium (Na+) in the soil is transported via the xylem from the root to the shoot. While excess Na+ is toxic to most plants, non-toxic concentrations have been shown to improve crop yields under certain conditions, such as when soil K+ is low. We quantified grain Na+ across a barley genome-wide association study panel grown under non-saline conditions and identified variants of a Class 1 HIGH-AFFINITY-POTASSIUM-TRANSPORTER (HvHKT1;5)-encoding gene responsible for Na+ content variation under these conditions. A leucine to proline substitution at position 189 (L189P) in HvHKT1;5 disturbs its characteristic plasma membrane localisation and disrupts Na+ transport. Under low and moderate soil Na+, genotypes containing HvHKT1:5P189 accumulate high concentrations of Na+ but exhibit no evidence of toxicity. As the frequency of HvHKT1:5P189 increases significantly in cultivated European germplasm, we cautiously speculate that this non-functional variant may enhance yield potential in non-saline environments, possibly by offsetting limitations of low available K+.
Collapse
Affiliation(s)
- Kelly Houston
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Jiaen Qiu
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Stefanie Wege
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Maria Hrmova
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Life Science, Huaiyin Normal University, 223300, Huaian, China
| | - Helena Oakey
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Yue Qu
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Pauline Smith
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Apriadi Situmorang
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Malcolm Macaulay
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Paulina Flis
- Future Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, NG7 2RD, UK
| | - Micha Bayer
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Stuart Roy
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- ARC Industrial Transformation Research Hub for Wheat in a Hot Dry Climate, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Claire Halpin
- School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, Scotland, UK
| | - Joanne Russell
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Miriam Schreiber
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Caitlin Byrt
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- Research School of Biology, 46 Sullivans Creek Road, The Australian National University, Canberra, ACT, 2601, Australia
| | - Matt Gilliham
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia.
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia.
| | - David E Salt
- Future Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, NG7 2RD, UK.
| | - Robbie Waugh
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK.
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia.
- School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, Scotland, UK.
| |
Collapse
|
198
|
Zhao C, Zhang H, Song C, Zhu JK, Shabala S. Mechanisms of Plant Responses and Adaptation to Soil Salinity. Innovation (N Y) 2020; 1:100017. [PMID: 34557705 PMCID: PMC8454569 DOI: 10.1016/j.xinn.2020.100017] [Citation(s) in RCA: 268] [Impact Index Per Article: 67.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Soil salinity is a major environmental stress that restricts the growth and yield of crops. Understanding the physiological, metabolic, and biochemical responses of plants to salt stress and mining the salt tolerance-associated genetic resource in nature will be extremely important for us to cultivate salt-tolerant crops. In this review, we provide a comprehensive summary of the mechanisms of salt stress responses in plants, including salt stress-triggered physiological responses, oxidative stress, salt stress sensing and signaling pathways, organellar stress, ion homeostasis, hormonal and gene expression regulation, metabolic changes, as well as salt tolerance mechanisms in halophytes. Important questions regarding salt tolerance that need to be addressed in the future are discussed.
Collapse
Affiliation(s)
- Chunzhao Zhao
- Shanghai Center for Plant Stress Biology and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Heng Zhang
- State Key Laboratory of Plant Molecular Genetics, Shanghai Center for Plant Stress Biology, Center of Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Chunpeng Song
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Jian-Kang Zhu
- Shanghai Center for Plant Stress Biology and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Sergey Shabala
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7001, Australia
| |
Collapse
|
199
|
Zeng X, Zhang P, Wang Y, Qin C, Chen S, He W, Tao L, Tan Y, Gao D, Wang B, Chen Z, Chen W, Jiang YY, Chen YZ. CMAUP: a database of collective molecular activities of useful plants. Nucleic Acids Res 2020; 47:D1118-D1127. [PMID: 30357356 PMCID: PMC6324012 DOI: 10.1093/nar/gky965] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 10/05/2018] [Indexed: 01/03/2023] Open
Abstract
The beneficial effects of functionally useful plants (e.g. medicinal and food plants) arise from the multi-target activities of multiple ingredients of these plants. The knowledge of the collective molecular activities of these plants facilitates mechanistic studies and expanded applications. A number of databases provide information about the effects and targets of various plants and ingredients. More comprehensive information is needed for broader classes of plants and for the landscapes of individual plant’s multiple targets, collective activities and regulated biological pathways, processes and diseases. We therefore developed a new database, Collective Molecular Activities of Useful Plants (CMAUP), to provide the collective landscapes of multiple targets (ChEMBL target classes) and activity levels (in 2D target-ingredient heatmap), and regulated gene ontologies (GO categories), biological pathways (KEGG categories) and diseases (ICD blocks) for 5645 plants (2567 medicinal, 170 food, 1567 edible, 3 agricultural and 119 garden plants) collected from or traditionally used in 153 countries and regions. These landscapes were derived from 47 645 plant ingredients active against 646 targets in 234 KEGG pathways associated with 2473 gene ontologies and 656 diseases. CMAUP (http://bidd2.nus.edu.sg/CMAUP/) is freely accessible and searchable by keywords, plant usage classes, species families, targets, KEGG pathways, gene ontologies, diseases (ICD code) and geographical locations.
Collapse
Affiliation(s)
- Xian Zeng
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China.,Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Peng Zhang
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Yali Wang
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Chu Qin
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Shangying Chen
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Weidong He
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Lin Tao
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore.,Zhejiang Key Laboratory of Gastro-intestinal Pathophysiology, Zhejiang Hospital of Traditional Chinese Medicine, Zhejiang Chinese Medical University, School of Medicine, Hangzhou Normal University, Hangzhou 310006, R. P. China
| | - Ying Tan
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China
| | - Dan Gao
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China
| | - Bohua Wang
- Key Lab of Agricultural Products Processing and Quality Control of Nanchang City, Jiangxi Agricultural University, Nanchang 330045, P. R. China.,College of Life and Environmental Sciences, Collaborative Innovation Center for Efficient and Health Production of Fisheries in Hunan Province, Hunan University of Arts and Science, Changde, Hunan 415000, P. R. China
| | - Zhe Chen
- Zhejiang Key Laboratory of Gastro-intestinal Pathophysiology, Zhejiang Hospital of Traditional Chinese Medicine, Zhejiang Chinese Medical University, School of Medicine, Hangzhou Normal University, Hangzhou 310006, R. P. China
| | - Weiping Chen
- Key Lab of Agricultural Products Processing and Quality Control of Nanchang City, Jiangxi Agricultural University, Nanchang 330045, P. R. China
| | - Yu Yang Jiang
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China
| | - Yu Zong Chen
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| |
Collapse
|
200
|
Elbasan F, Ozfidan-Konakci C, Yildiztugay E, Kucukoduk M. Rare-earth element scandium improves stomatal regulation and enhances salt and drought stress tolerance by up-regulating antioxidant responses of Oryza sativa. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 152:157-169. [PMID: 32417636 DOI: 10.1016/j.plaphy.2020.04.040] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 04/21/2020] [Accepted: 04/28/2020] [Indexed: 06/11/2023]
Abstract
Oryza sativa L. cv. Gönen grown in hydroponic culture was treated with scandium (Sc; 25 and 50 μM) alone or in combination with salt (100 mM NaCl) and/or drought (5% PEG-6000). Stress caused a decrease in growth (RGR), water content (RWC), osmotic potential (ΨΠ), chlorophyll fluorescence (Fv/Fm) and potential photochemical efficiency (Fv/Fo). Sc application prevented the decreases of these parameters. Sc also alleviated the changes on gas exchange parameters (carbon assimilation rate (A), stomatal conductance (gs), intercellular CO2 concentrations (Ci), transpiration rate (E) and stomatal limitation (Ls)). Stress caused no increase in superoxide dismutase (SOD) activity. After induvial applied NaCl or PEG, catalase (CAT) and ascorbate peroxidase (APX) showed an enhancement in activation and tried to scavenge of hydrogen peroxide (H2O2). On the other hand, in plants with the combination form of NaCl and PEG, only CAT activity was induced. Sc applications to NaCl-treated rice led to an increase of SOD, APX, glutathione reductase (GR), monodehydroascorbate reductase (MDHAR) and dehydroascorbate reductase (DHAR) as well as peroxidase (POX). Sc under NaCl could be maintained both ascorbate (AsA) and glutathione (GSH) regeneration. Despite of induction of MDHAR and DHAR under Sc plus PEG, Sc did not maintain AsA redox state because of no induction in APX activity. However, GSH pool could be regenerated by induction in DHAR and GR in this group. Sc application (especially for 25 μM) in rice exposed to NaCl + PEG resulted an enhancement in APX and MDHAR and so Sc could be partially provided AsA regeneration. Since no increases in DHAR and GR were observed, GSH pool was reduced. Due to this activation of antioxidant enzymes, stress-induced H2O2 and TBARS content (lipid peroxidation) significantly decreased in rice with Sc applications. Sc in plants with stress also increased the transcript levels of OsCDPK7 and OsBG1 related to stomatal movement and signaling pathway. Consequently, Sc protected the rice plants by minimizing disturbances caused by NaCl or PEG exposure via the AsA-GSH redox-based systems.
Collapse
Affiliation(s)
- Fevzi Elbasan
- Selcuk University, Faculty of Science, Department of Biotechnology, 42130, Konya, Turkey.
| | - Ceyda Ozfidan-Konakci
- Necmettin Erbakan University, Faculty of Science, Department of Molecular Biology and Genetics, 42090, Konya, Turkey.
| | - Evren Yildiztugay
- Selcuk University, Faculty of Science, Department of Biotechnology, 42130, Konya, Turkey.
| | - Mustafa Kucukoduk
- Selcuk University, Faculty of Science, Department of Biology, 42130, Konya, Turkey.
| |
Collapse
|